Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064725.t1 | XP_003603724.1 | 88.2 | 237 | 14 | 4 | 1 | 236 | 1 | 224 | 7.80E-117 | 429.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064725.t1 | Q9LQZ7 | 37.4 | 326 | 107 | 11 | 1 | 235 | 1 | 320 | 1.1e-45 | 184.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064725.t1 | G7J4N4 | 88.2 | 237 | 14 | 4 | 1 | 236 | 1 | 224 | 5.6e-117 | 429.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene064725.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064725.t1 | MTR_3g113070 | 88.186 | 237 | 14 | 4 | 1 | 236 | 1 | 224 | 4.43e-151 | 419 |
| MS.gene064725.t1 | MTR_1g023260 | 46.595 | 279 | 84 | 10 | 1 | 232 | 1 | 261 | 1.84e-66 | 207 |
| MS.gene064725.t1 | MTR_1g023260 | 55.801 | 181 | 45 | 4 | 1 | 149 | 1 | 178 | 7.61e-62 | 192 |
| MS.gene064725.t1 | MTR_3g117320 | 48.529 | 204 | 55 | 5 | 1 | 158 | 1 | 200 | 9.48e-57 | 180 |
| MS.gene064725.t1 | MTR_4g071200 | 42.647 | 204 | 79 | 5 | 1 | 169 | 1 | 201 | 1.46e-49 | 162 |
| MS.gene064725.t1 | MTR_2g099010 | 34.884 | 215 | 114 | 4 | 1 | 203 | 1 | 201 | 2.34e-36 | 129 |
| MS.gene064725.t1 | MTR_2g073370 | 54.206 | 107 | 46 | 1 | 1 | 107 | 1 | 104 | 3.71e-36 | 129 |
| MS.gene064725.t1 | MTR_2g099010 | 35.814 | 215 | 111 | 4 | 1 | 203 | 1 | 200 | 8.22e-36 | 127 |
| MS.gene064725.t1 | MTR_4g067320 | 52.336 | 107 | 48 | 1 | 1 | 107 | 1 | 104 | 1.11e-32 | 119 |
| MS.gene064725.t1 | MTR_4g067320 | 52.336 | 107 | 48 | 1 | 1 | 107 | 1 | 104 | 1.20e-32 | 119 |
| MS.gene064725.t1 | MTR_1g023260 | 36.620 | 213 | 72 | 7 | 67 | 232 | 57 | 253 | 1.27e-27 | 106 |
| MS.gene064725.t1 | MTR_5g021580 | 33.511 | 188 | 104 | 6 | 1 | 186 | 1 | 169 | 6.79e-24 | 94.7 |
| MS.gene064725.t1 | MTR_5g021580 | 33.511 | 188 | 104 | 6 | 1 | 186 | 1 | 169 | 9.45e-24 | 94.4 |
| MS.gene064725.t1 | MTR_1g013450 | 33.113 | 151 | 83 | 2 | 5 | 149 | 6 | 144 | 1.08e-17 | 80.9 |
| MS.gene064725.t1 | MTR_7g018170 | 34.821 | 112 | 61 | 1 | 5 | 116 | 26 | 125 | 3.91e-16 | 77.0 |
| MS.gene064725.t1 | MTR_3g105710 | 38.947 | 95 | 46 | 1 | 5 | 99 | 6 | 88 | 1.24e-14 | 72.0 |
| MS.gene064725.t1 | MTR_4g128930 | 36.842 | 95 | 48 | 1 | 5 | 99 | 22 | 104 | 5.37e-14 | 70.9 |
| MS.gene064725.t1 | MTR_5g069480 | 31.313 | 99 | 56 | 1 | 1 | 99 | 1 | 87 | 1.79e-12 | 65.9 |
| MS.gene064725.t1 | MTR_5g069480 | 31.313 | 99 | 56 | 1 | 1 | 99 | 1 | 87 | 3.26e-12 | 65.5 |
| MS.gene064725.t1 | MTR_2g099010 | 25.767 | 163 | 95 | 4 | 56 | 203 | 24 | 175 | 2.07e-11 | 62.0 |
| MS.gene064725.t1 | MTR_3g082630 | 33.036 | 112 | 59 | 3 | 1 | 112 | 1 | 96 | 2.52e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064725.t1 | AT1G75540 | 38.272 | 324 | 107 | 10 | 1 | 235 | 1 | 320 | 6.47e-59 | 189 |
| MS.gene064725.t1 | AT4G39070 | 60.163 | 123 | 46 | 2 | 1 | 122 | 1 | 121 | 3.17e-45 | 151 |
| MS.gene064725.t1 | AT1G78600 | 53.271 | 107 | 47 | 1 | 1 | 107 | 1 | 104 | 4.39e-36 | 129 |
| MS.gene064725.t1 | AT1G78600 | 53.271 | 107 | 47 | 1 | 1 | 107 | 1 | 104 | 7.27e-36 | 129 |
| MS.gene064725.t1 | AT1G06040 | 54.206 | 107 | 46 | 1 | 1 | 107 | 1 | 104 | 8.70e-36 | 125 |
| MS.gene064725.t1 | AT2G31380 | 54.206 | 107 | 46 | 1 | 1 | 107 | 1 | 104 | 3.09e-35 | 125 |
| MS.gene064725.t1 | AT1G06040 | 54.206 | 107 | 46 | 1 | 1 | 107 | 1 | 104 | 5.82e-35 | 125 |
| MS.gene064725.t1 | AT4G10240 | 48.182 | 110 | 50 | 2 | 1 | 107 | 1 | 106 | 1.64e-30 | 111 |
| MS.gene064725.t1 | AT2G21320 | 41.322 | 121 | 65 | 2 | 1 | 121 | 1 | 115 | 5.63e-24 | 94.7 |
| MS.gene064725.t1 | AT4G38960 | 42.982 | 114 | 59 | 2 | 1 | 114 | 1 | 108 | 6.50e-24 | 94.7 |
| MS.gene064725.t1 | AT4G38960 | 42.982 | 114 | 59 | 2 | 1 | 114 | 1 | 108 | 6.50e-24 | 94.7 |
| MS.gene064725.t1 | AT2G24790 | 33.835 | 133 | 66 | 3 | 5 | 129 | 8 | 126 | 9.87e-17 | 76.6 |
| MS.gene064725.t1 | AT2G24790 | 40.000 | 95 | 45 | 1 | 5 | 99 | 8 | 90 | 2.93e-16 | 76.6 |
| MS.gene064725.t1 | AT4G38960 | 31.210 | 157 | 59 | 3 | 1 | 114 | 1 | 151 | 4.79e-16 | 74.7 |
| MS.gene064725.t1 | AT5G15850 | 35.398 | 113 | 61 | 1 | 5 | 117 | 12 | 112 | 7.10e-16 | 75.9 |
| MS.gene064725.t1 | AT5G24930 | 37.895 | 95 | 47 | 1 | 5 | 99 | 6 | 88 | 5.72e-15 | 73.6 |
| MS.gene064725.t1 | AT3G02380 | 35.088 | 114 | 59 | 2 | 5 | 115 | 16 | 117 | 1.58e-14 | 72.0 |
| MS.gene064725.t1 | AT2G33500 | 35.922 | 103 | 54 | 1 | 3 | 105 | 10 | 100 | 2.11e-13 | 69.3 |
| MS.gene064725.t1 | AT2G33500 | 35.922 | 103 | 54 | 1 | 3 | 105 | 10 | 100 | 2.25e-13 | 68.9 |
| MS.gene064725.t1 | AT1G28050 | 37.500 | 104 | 53 | 1 | 2 | 105 | 6 | 97 | 2.35e-13 | 68.9 |
| MS.gene064725.t1 | AT5G15840 | 30.435 | 115 | 68 | 1 | 5 | 119 | 20 | 122 | 4.98e-13 | 67.4 |
| MS.gene064725.t1 | AT5G15840 | 32.632 | 95 | 52 | 1 | 5 | 99 | 20 | 102 | 7.63e-13 | 67.4 |
| MS.gene064725.t1 | AT2G47890 | 40.476 | 84 | 38 | 2 | 5 | 88 | 13 | 84 | 2.61e-11 | 62.0 |
| MS.gene064725.t1 | AT2G47890 | 40.476 | 84 | 38 | 2 | 5 | 88 | 13 | 84 | 2.68e-11 | 62.4 |
| MS.gene064725.t1 | AT2G47890 | 40.476 | 84 | 38 | 2 | 5 | 88 | 13 | 84 | 4.04e-11 | 62.4 |
Find 60 sgRNAs with CRISPR-Local
Find 64 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGGTTGGGAGAATTATT+AGG | 0.172908 | 3.4:-97561307 | None:intergenic |
| TAAGATGTGACAATGTTAAT+TGG | 0.192450 | 3.4:-97562027 | None:intergenic |
| AAGAAACCTATTATGCTTCT+TGG | 0.240931 | 3.4:-97561604 | None:intergenic |
| ACCAATTTCAGCAGCAGTTT+GGG | 0.246710 | 3.4:+97561972 | MS.gene064725:CDS |
| CCCCAAACTGCTGCTGAAAT+TGG | 0.248979 | 3.4:-97561973 | None:intergenic |
| TATTCATGAGGAAAATATTC+TGG | 0.282344 | 3.4:+97561848 | MS.gene064725:CDS |
| CCAACTCTTCATGAAGAAAA+TGG | 0.301498 | 3.4:+97561663 | MS.gene064725:CDS |
| CACCAATTTCAGCAGCAGTT+TGG | 0.303898 | 3.4:+97561971 | MS.gene064725:CDS |
| GAGAGAGAAGCGACGGTGTT+TGG | 0.360255 | 3.4:-97561278 | None:intergenic |
| AACACACCAAGAAGCATAAT+AGG | 0.390006 | 3.4:+97561598 | MS.gene064725:CDS |
| AAGATGTGACAATGTTAATT+GGG | 0.396257 | 3.4:-97562026 | None:intergenic |
| CATAATAGGTTTCTTCTAAG+TGG | 0.399657 | 3.4:+97561612 | MS.gene064725:CDS |
| GAGTGTGATTTGAAGATTCA+TGG | 0.427331 | 3.4:+97561567 | MS.gene064725:CDS |
| TGAAGAGTTGGAGGAGGAGC+AGG | 0.431012 | 3.4:-97561651 | None:intergenic |
| CTACAACAGCAGAATCATAT+TGG | 0.434122 | 3.4:+97561780 | MS.gene064725:CDS |
| AATGGTTGGGAGAATTATTA+GGG | 0.446787 | 3.4:-97561306 | None:intergenic |
| TCATGAGAGGGAACAGAAGA+AGG | 0.454520 | 3.4:-97561756 | None:intergenic |
| GTGGTCGCAGGTGGAGCATA+AGG | 0.456556 | 3.4:-97561227 | None:intergenic |
| GAACAGAAGAAGGGGATTCA+AGG | 0.477624 | 3.4:-97561746 | None:intergenic |
| ATAATAGGTTTCTTCTAAGT+GGG | 0.482873 | 3.4:+97561613 | MS.gene064725:CDS |
| TTCTCTAGCGAGAGCATGTG+TGG | 0.496184 | 3.4:+97561876 | MS.gene064725:CDS |
| TCACAGAGAGGGAAATGGTT+GGG | 0.504950 | 3.4:-97561319 | None:intergenic |
| AAATATCACAGAGAGGGAAA+TGG | 0.517933 | 3.4:-97561324 | None:intergenic |
| AGAGAAGCGACGGTGTTTGG+AGG | 0.521730 | 3.4:-97561275 | None:intergenic |
| ATGGTGGACACGGTGGTCGC+AGG | 0.523492 | 3.4:-97561239 | None:intergenic |
| CAAACTGCTGCTGAAATTGG+TGG | 0.525028 | 3.4:-97561970 | None:intergenic |
| GTGGACACGGTGGTCGCAGG+TGG | 0.531543 | 3.4:-97561236 | None:intergenic |
| AAATCTTCAAACTTCCAACC+TGG | 0.533797 | 3.4:-97561723 | None:intergenic |
| GGTTGGGAGAATTATTAGGG+TGG | 0.538692 | 3.4:-97561303 | None:intergenic |
| TGGAGGCGAGTTTGTTAGCA+TGG | 0.539793 | 3.4:-97561258 | None:intergenic |
| TGTGACAATGTTAATTGGGA+GGG | 0.542911 | 3.4:-97562022 | None:intergenic |
| CATGAGAGGGAACAGAAGAA+GGG | 0.544618 | 3.4:-97561755 | None:intergenic |
| TGCTGTTGTAGTTCATGAGA+GGG | 0.552947 | 3.4:-97561768 | None:intergenic |
| GTTTGTTAGCATGGTGGACA+CGG | 0.562165 | 3.4:-97561249 | None:intergenic |
| TCTTCATGAAGAGTTGGAGG+AGG | 0.568381 | 3.4:-97561657 | None:intergenic |
| CTTTGTTTGTAGGAAAGAAG+AGG | 0.568458 | 3.4:+97561504 | MS.gene064725:intron |
| CTGCTGTTGTAGTTCATGAG+AGG | 0.569968 | 3.4:-97561769 | None:intergenic |
| GCATAAGGCGGCTTCATCCG+CGG | 0.570214 | 3.4:-97561212 | None:intergenic |
| AGTGCGACATCTGTAACAAA+CGG | 0.576581 | 3.4:+97561170 | MS.gene064725:CDS |
| TACTTGATAAACACTATCCC+AGG | 0.579028 | 3.4:+97561705 | MS.gene064725:CDS |
| CCAATTTCAGCAGCAGTTTG+GGG | 0.580053 | 3.4:+97561973 | MS.gene064725:CDS |
| AATCTTCAAACTTCCAACCT+GGG | 0.582408 | 3.4:-97561722 | None:intergenic |
| GAATAATACAGTGGTGCTTG+AGG | 0.582637 | 3.4:-97561909 | None:intergenic |
| TTGGGAGGGATTGTTATCTG+TGG | 0.583370 | 3.4:-97562008 | None:intergenic |
| CGACATCTGTAACAAACGGC+AGG | 0.587499 | 3.4:+97561174 | MS.gene064725:CDS |
| ATCACAGAGAGGGAAATGGT+TGG | 0.589033 | 3.4:-97561320 | None:intergenic |
| GTTTGTTACAGATGTCGCAC+TGG | 0.600679 | 3.4:-97561168 | None:intergenic |
| TCTCTAGCGAGAGCATGTGT+GGG | 0.602430 | 3.4:+97561877 | MS.gene064725:CDS |
| ATGTGACAATGTTAATTGGG+AGG | 0.602797 | 3.4:-97562023 | None:intergenic |
| GTCGCAGGTGGAGCATAAGG+CGG | 0.608572 | 3.4:-97561224 | None:intergenic |
| CGAGGCAAATATCACAGAGA+GGG | 0.613147 | 3.4:-97561330 | None:intergenic |
| ATGAGAGGGAACAGAAGAAG+GGG | 0.616850 | 3.4:-97561754 | None:intergenic |
| CAATTTCAGCAGCAGTTTGG+GGG | 0.628510 | 3.4:+97561974 | MS.gene064725:CDS |
| TGATAAACACTATCCCAGGT+TGG | 0.630031 | 3.4:+97561709 | MS.gene064725:CDS |
| GGTGGTTGAGAGAGAAGCGA+CGG | 0.648653 | 3.4:-97561285 | None:intergenic |
| TGTTAATTATCATATTCATG+AGG | 0.653612 | 3.4:+97561836 | MS.gene064725:CDS |
| AGGCGAGTTTGTTAGCATGG+TGG | 0.655308 | 3.4:-97561255 | None:intergenic |
| TGTTAGCATGGTGGACACGG+TGG | 0.691209 | 3.4:-97561246 | None:intergenic |
| ACGAGGCAAATATCACAGAG+AGG | 0.701262 | 3.4:-97561331 | None:intergenic |
| GGCTTCTTTATTCTGCACCG+CGG | 0.708284 | 3.4:+97561195 | MS.gene064725:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACATAAAAGAATGAATAT+TGG | - | chr3.4:97561365-97561384 | None:intergenic | 15.0% |
| !! | TGTTAATTATCATATTCATG+AGG | + | chr3.4:97561836-97561855 | MS.gene064725:CDS | 20.0% |
| !!! | ACTGTATTATTCTGAAAAAA+TGG | + | chr3.4:97561920-97561939 | MS.gene064725:CDS | 20.0% |
| !!! | ATTTTTTCAGAATAATACAG+TGG | - | chr3.4:97561921-97561940 | None:intergenic | 20.0% |
| ! | ATAATAGGTTTCTTCTAAGT+GGG | + | chr3.4:97561613-97561632 | MS.gene064725:CDS | 25.0% |
| ! | TATTCATGAGGAAAATATTC+TGG | + | chr3.4:97561848-97561867 | MS.gene064725:CDS | 25.0% |
| AAATGGTTGGGAGAATTATT+AGG | - | chr3.4:97561310-97561329 | None:intergenic | 30.0% | |
| AAGAAACCTATTATGCTTCT+TGG | - | chr3.4:97561607-97561626 | None:intergenic | 30.0% | |
| AATGGTTGGGAGAATTATTA+GGG | - | chr3.4:97561309-97561328 | None:intergenic | 30.0% | |
| CATAATAGGTTTCTTCTAAG+TGG | + | chr3.4:97561612-97561631 | MS.gene064725:CDS | 30.0% | |
| ! | GAGTTTGTTTCTTTGTTTGT+AGG | + | chr3.4:97561494-97561513 | MS.gene064725:intron | 30.0% |
| !!! | AAGAGGTTTTGTTTTTTGTC+AGG | + | chr3.4:97561521-97561540 | MS.gene064725:CDS | 30.0% |
| AAATATCACAGAGAGGGAAA+TGG | - | chr3.4:97561327-97561346 | None:intergenic | 35.0% | |
| AAATCTTCAAACTTCCAACC+TGG | - | chr3.4:97561726-97561745 | None:intergenic | 35.0% | |
| AATCTTCAAACTTCCAACCT+GGG | - | chr3.4:97561725-97561744 | None:intergenic | 35.0% | |
| CCAACTCTTCATGAAGAAAA+TGG | + | chr3.4:97561663-97561682 | MS.gene064725:CDS | 35.0% | |
| CTACAACAGCAGAATCATAT+TGG | + | chr3.4:97561780-97561799 | MS.gene064725:CDS | 35.0% | |
| GAATATTGGAGAGAATTACG+AGG | - | chr3.4:97561351-97561370 | None:intergenic | 35.0% | |
| GAGTGTGATTTGAAGATTCA+TGG | + | chr3.4:97561567-97561586 | MS.gene064725:CDS | 35.0% | |
| TACTTGATAAACACTATCCC+AGG | + | chr3.4:97561705-97561724 | MS.gene064725:CDS | 35.0% | |
| ! | AACACACCAAGAAGCATAAT+AGG | + | chr3.4:97561598-97561617 | MS.gene064725:CDS | 35.0% |
| ! | CCATTTTCTTCATGAAGAGT+TGG | - | chr3.4:97561666-97561685 | None:intergenic | 35.0% |
| ! | CTTTGTTTGTAGGAAAGAAG+AGG | + | chr3.4:97561504-97561523 | MS.gene064725:intron | 35.0% |
| ! | TTTTCTTCATGAAGAGTTGG+AGG | - | chr3.4:97561663-97561682 | None:intergenic | 35.0% |
| ACCAATTTCAGCAGCAGTTT+GGG | + | chr3.4:97561972-97561991 | MS.gene064725:CDS | 40.0% | |
| AGTGCGACATCTGTAACAAA+CGG | + | chr3.4:97561170-97561189 | MS.gene064725:CDS | 40.0% | |
| GAATAATACAGTGGTGCTTG+AGG | - | chr3.4:97561912-97561931 | None:intergenic | 40.0% | |
| TGATAAACACTATCCCAGGT+TGG | + | chr3.4:97561709-97561728 | MS.gene064725:CDS | 40.0% | |
| TGCTGTTGTAGTTCATGAGA+GGG | - | chr3.4:97561771-97561790 | None:intergenic | 40.0% | |
| ACGAGGCAAATATCACAGAG+AGG | - | chr3.4:97561334-97561353 | None:intergenic | 45.0% | |
| ATCACAGAGAGGGAAATGGT+TGG | - | chr3.4:97561323-97561342 | None:intergenic | 45.0% | |
| ATGAGAGGGAACAGAAGAAG+GGG | - | chr3.4:97561757-97561776 | None:intergenic | 45.0% | |
| CAAACTGCTGCTGAAATTGG+TGG | - | chr3.4:97561973-97561992 | None:intergenic | 45.0% | |
| CAATTTCAGCAGCAGTTTGG+GGG | + | chr3.4:97561974-97561993 | MS.gene064725:CDS | 45.0% | |
| CACCAATTTCAGCAGCAGTT+TGG | + | chr3.4:97561971-97561990 | MS.gene064725:CDS | 45.0% | |
| CATGAGAGGGAACAGAAGAA+GGG | - | chr3.4:97561758-97561777 | None:intergenic | 45.0% | |
| CCAATTTCAGCAGCAGTTTG+GGG | + | chr3.4:97561973-97561992 | MS.gene064725:CDS | 45.0% | |
| CGAGGCAAATATCACAGAGA+GGG | - | chr3.4:97561333-97561352 | None:intergenic | 45.0% | |
| CTGCTGTTGTAGTTCATGAG+AGG | - | chr3.4:97561772-97561791 | None:intergenic | 45.0% | |
| GAACAGAAGAAGGGGATTCA+AGG | - | chr3.4:97561749-97561768 | None:intergenic | 45.0% | |
| GGTTGGGAGAATTATTAGGG+TGG | - | chr3.4:97561306-97561325 | None:intergenic | 45.0% | |
| TCACAGAGAGGGAAATGGTT+GGG | - | chr3.4:97561322-97561341 | None:intergenic | 45.0% | |
| TCATGAGAGGGAACAGAAGA+AGG | - | chr3.4:97561759-97561778 | None:intergenic | 45.0% | |
| TCTTCATGAAGAGTTGGAGG+AGG | - | chr3.4:97561660-97561679 | None:intergenic | 45.0% | |
| TTGGGAGGGATTGTTATCTG+TGG | - | chr3.4:97562011-97562030 | None:intergenic | 45.0% | |
| ! | GTTTGTTACAGATGTCGCAC+TGG | - | chr3.4:97561171-97561190 | None:intergenic | 45.0% |
| !! | GTTTGTTAGCATGGTGGACA+CGG | - | chr3.4:97561252-97561271 | None:intergenic | 45.0% |
| CCCCAAACTGCTGCTGAAAT+TGG | - | chr3.4:97561976-97561995 | None:intergenic | 50.0% | |
| CGACATCTGTAACAAACGGC+AGG | + | chr3.4:97561174-97561193 | MS.gene064725:CDS | 50.0% | |
| GGCTTCTTTATTCTGCACCG+CGG | + | chr3.4:97561195-97561214 | MS.gene064725:CDS | 50.0% | |
| ! | TCTCTAGCGAGAGCATGTGT+GGG | + | chr3.4:97561877-97561896 | MS.gene064725:CDS | 50.0% |
| ! | TTCTCTAGCGAGAGCATGTG+TGG | + | chr3.4:97561876-97561895 | MS.gene064725:CDS | 50.0% |
| !! | AGGCGAGTTTGTTAGCATGG+TGG | - | chr3.4:97561258-97561277 | None:intergenic | 50.0% |
| !! | TGGAGGCGAGTTTGTTAGCA+TGG | - | chr3.4:97561261-97561280 | None:intergenic | 50.0% |
| AGAGAAGCGACGGTGTTTGG+AGG | - | chr3.4:97561278-97561297 | None:intergenic | 55.0% | |
| GAGAGAGAAGCGACGGTGTT+TGG | - | chr3.4:97561281-97561300 | None:intergenic | 55.0% | |
| GGTGGTTGAGAGAGAAGCGA+CGG | - | chr3.4:97561288-97561307 | None:intergenic | 55.0% | |
| TGAAGAGTTGGAGGAGGAGC+AGG | - | chr3.4:97561654-97561673 | None:intergenic | 55.0% | |
| !! | TGTTAGCATGGTGGACACGG+TGG | - | chr3.4:97561249-97561268 | None:intergenic | 55.0% |
| GCATAAGGCGGCTTCATCCG+CGG | - | chr3.4:97561215-97561234 | None:intergenic | 60.0% | |
| GTCGCAGGTGGAGCATAAGG+CGG | - | chr3.4:97561227-97561246 | None:intergenic | 60.0% | |
| GTGGTCGCAGGTGGAGCATA+AGG | - | chr3.4:97561230-97561249 | None:intergenic | 60.0% | |
| !! | ATGGTGGACACGGTGGTCGC+AGG | - | chr3.4:97561242-97561261 | None:intergenic | 65.0% |
| GTGGACACGGTGGTCGCAGG+TGG | - | chr3.4:97561239-97561258 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 97561160 | 97562034 | 97561160 | ID=MS.gene064725 |
| chr3.4 | mRNA | 97561160 | 97562034 | 97561160 | ID=MS.gene064725.t1;Parent=MS.gene064725 |
| chr3.4 | exon | 97561160 | 97561351 | 97561160 | ID=MS.gene064725.t1.exon1;Parent=MS.gene064725.t1 |
| chr3.4 | CDS | 97561160 | 97561351 | 97561160 | ID=cds.MS.gene064725.t1;Parent=MS.gene064725.t1 |
| chr3.4 | exon | 97561516 | 97562034 | 97561516 | ID=MS.gene064725.t1.exon2;Parent=MS.gene064725.t1 |
| chr3.4 | CDS | 97561516 | 97562034 | 97561516 | ID=cds.MS.gene064725.t1;Parent=MS.gene064725.t1 |
| Gene Sequence |
| Protein sequence |
