Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064948.t1 | XP_013467138.1 | 83.9 | 355 | 25 | 2 | 1 | 354 | 1 | 324 | 2.60E-132 | 481.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064948.t1 | Q9ZSH7 | 37.4 | 99 | 58 | 3 | 8 | 105 | 30 | 125 | 1.7e-07 | 58.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064948.t1 | A0A072VGJ6 | 83.9 | 355 | 25 | 2 | 1 | 354 | 1 | 324 | 1.9e-132 | 481.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene064948.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064948.t1 | MTR_1g046340 | 61.299 | 354 | 113 | 4 | 2 | 354 | 5 | 335 | 1.96e-135 | 389 |
| MS.gene064948.t1 | MTR_1g046200 | 92.308 | 169 | 12 | 1 | 187 | 354 | 156 | 324 | 7.67e-112 | 328 |
| MS.gene064948.t1 | MTR_1g046320 | 72.941 | 170 | 44 | 1 | 184 | 353 | 166 | 333 | 1.00e-85 | 263 |
| MS.gene064948.t1 | MTR_3g088515 | 48.413 | 252 | 106 | 5 | 2 | 249 | 16 | 247 | 1.33e-54 | 179 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064948.t1 | AT3G06160 | 24.791 | 359 | 201 | 11 | 6 | 352 | 23 | 324 | 4.71e-18 | 84.3 |
| MS.gene064948.t1 | AT3G06160 | 24.791 | 359 | 201 | 11 | 6 | 352 | 8 | 309 | 4.78e-18 | 84.0 |
| MS.gene064948.t1 | AT3G06160 | 24.791 | 359 | 201 | 11 | 6 | 352 | 8 | 309 | 4.78e-18 | 84.0 |
| MS.gene064948.t1 | AT3G06160 | 24.791 | 359 | 201 | 11 | 6 | 352 | 8 | 309 | 4.78e-18 | 84.0 |
| MS.gene064948.t1 | AT3G06160 | 24.791 | 359 | 201 | 11 | 6 | 352 | 67 | 368 | 7.80e-18 | 84.3 |
| MS.gene064948.t1 | AT5G57720 | 22.626 | 358 | 199 | 12 | 5 | 352 | 10 | 299 | 2.13e-13 | 70.5 |
| MS.gene064948.t1 | AT4G01580 | 31.056 | 161 | 95 | 5 | 8 | 167 | 30 | 175 | 2.52e-12 | 65.5 |
| MS.gene064948.t1 | AT3G18960 | 37.624 | 101 | 59 | 3 | 8 | 107 | 30 | 127 | 1.44e-11 | 63.5 |
| MS.gene064948.t1 | AT3G18960 | 37.624 | 101 | 59 | 3 | 8 | 107 | 30 | 127 | 1.46e-11 | 63.2 |
Find 61 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATCCTTGATAACATTATT+TGG | 0.147862 | 1.4:+30644111 | None:intergenic |
| TAGAGATGAAAATTCTTTAG+AGG | 0.303868 | 1.4:-30645088 | MS.gene064948:CDS |
| TGTTAAGGGTGCACATTGTT+AGG | 0.310846 | 1.4:-30643716 | MS.gene064948:CDS |
| CTTACCAGCTTTGCACTTGC+AGG | 0.327904 | 1.4:+30644696 | None:intergenic |
| AAAGAATTGTACCAATTCAT+TGG | 0.333303 | 1.4:+30644455 | None:intergenic |
| TGAACTTGATGCGTTCAAAA+AGG | 0.339507 | 1.4:-30645218 | MS.gene064948:CDS |
| AGAGAGGCCAAGTACGTATA+TGG | 0.345367 | 1.4:-30643854 | MS.gene064948:CDS |
| TGCTGCTGTTGATGATATTA+TGG | 0.347297 | 1.4:-30644854 | MS.gene064948:CDS |
| AGATCATGATGATGATATTA+TGG | 0.349539 | 1.4:-30644821 | MS.gene064948:CDS |
| CGAGAATGAAAGAATGTATA+AGG | 0.350460 | 1.4:-30644752 | MS.gene064948:CDS |
| GCAATAAAGTGTGGATTTCC+CGG | 0.353942 | 1.4:+30644498 | None:intergenic |
| ATCAAGTTCACAAAAGCATT+AGG | 0.355825 | 1.4:+30645231 | None:intergenic |
| TGCTGAAATGTATATTCAAC+CGG | 0.363963 | 1.4:-30644517 | MS.gene064948:CDS |
| ATGGAACAATCGAAATGTTA+AGG | 0.368271 | 1.4:-30643731 | MS.gene064948:CDS |
| CTCTTCGTCTACGATATCTT+AGG | 0.380674 | 1.4:+30645175 | None:intergenic |
| TTGTACCAATTCATTGGGTC+TGG | 0.396197 | 1.4:+30644461 | None:intergenic |
| ATATTGAAAACAACGTATTC+AGG | 0.401283 | 1.4:-30645041 | MS.gene064948:CDS |
| TCAAGTTCACAAAAGCATTA+GGG | 0.428525 | 1.4:+30645232 | None:intergenic |
| TCATTCCAGACCCAATGAAT+TGG | 0.429879 | 1.4:-30644466 | MS.gene064948:intron |
| AAGAATTGTACCAATTCATT+GGG | 0.441169 | 1.4:+30644456 | None:intergenic |
| ATATGTGTTGTACTTATTTG+TGG | 0.442759 | 1.4:+30643882 | None:intergenic |
| TATTCCAAATAATGTTATCA+AGG | 0.444844 | 1.4:-30644115 | MS.gene064948:CDS |
| CATCTCTCCATATACGTACT+TGG | 0.448522 | 1.4:+30643847 | None:intergenic |
| CATGTCAAAGCTCGTCGTAT+TGG | 0.455772 | 1.4:-30645147 | MS.gene064948:CDS |
| TATGATGGAGGATGAGGAAG+AGG | 0.471010 | 1.4:-30644950 | MS.gene064948:CDS |
| TGGAACAATCGAAATGTTAA+GGG | 0.479872 | 1.4:-30643730 | MS.gene064948:CDS |
| GATGGTCGAGTACGTGTGCT+AGG | 0.481978 | 1.4:-30643828 | MS.gene064948:CDS |
| CCTTGTGTGTTGCCACTGTA+AGG | 0.488769 | 1.4:-30644061 | MS.gene064948:intron |
| GAAGAAGTCTGGGTAATCCT+TGG | 0.492866 | 1.4:+30645504 | None:intergenic |
| TTGTGGCAAGATGTGATGAT+AGG | 0.494426 | 1.4:+30643899 | None:intergenic |
| TAATAATATGATGGAGGATG+AGG | 0.497070 | 1.4:-30644956 | MS.gene064948:CDS |
| GTCGAGTACGTGTGCTAGGG+TGG | 0.503803 | 1.4:-30643824 | MS.gene064948:CDS |
| AGAACCTGCAAGTGCAAAGC+TGG | 0.504053 | 1.4:-30644700 | MS.gene064948:intron |
| GATATCGTAGACGAAGAGAT+TGG | 0.504827 | 1.4:-30645170 | MS.gene064948:CDS |
| GGAGGAAAATAATAATATGA+TGG | 0.511899 | 1.4:-30644965 | MS.gene064948:CDS |
| ATCAATGTGTGAAAAGAAGA+AGG | 0.520397 | 1.4:-30644998 | MS.gene064948:CDS |
| AGAGAAGCACGCTGAAAGAA+TGG | 0.532134 | 1.4:-30645467 | MS.gene064948:intron |
| AAGGGTGCACATTGTTAGGA+AGG | 0.552584 | 1.4:-30643712 | MS.gene064948:CDS |
| CCTTACAGTGGCAACACACA+AGG | 0.552665 | 1.4:+30644061 | None:intergenic |
| GGAAAATAATAATATGATGG+AGG | 0.559551 | 1.4:-30644962 | MS.gene064948:CDS |
| TGATGATGATATTATGGCAG+AGG | 0.566025 | 1.4:-30644815 | MS.gene064948:CDS |
| AGATGAAAATTCTTTAGAGG+AGG | 0.577073 | 1.4:-30645085 | MS.gene064948:CDS |
| GAGATTGTGCTGCGTGAAGA+TGG | 0.578226 | 1.4:-30643750 | MS.gene064948:CDS |
| GATGAGGAAGAGGACAATGA+TGG | 0.588535 | 1.4:-30644940 | MS.gene064948:CDS |
| GATGATGATTATGATTATGA+TGG | 0.594417 | 1.4:-30644892 | MS.gene064948:CDS |
| CAAGTACGTATATGGAGAGA+TGG | 0.596390 | 1.4:-30643846 | MS.gene064948:CDS |
| CATCATGATACCGATGATGA+TGG | 0.600687 | 1.4:-30644787 | MS.gene064948:CDS |
| AATTGTAACTAAGATGGCCA+AGG | 0.605912 | 1.4:-30645521 | None:intergenic |
| GAAGAAGGTAAATGACGAGG+AGG | 0.609557 | 1.4:-30644983 | MS.gene064948:CDS |
| ATGGTCGAGTACGTGTGCTA+GGG | 0.616130 | 1.4:-30643827 | MS.gene064948:CDS |
| CATTCAGAGTAATGACTTAG+CGG | 0.619259 | 1.4:-30643922 | MS.gene064948:CDS |
| TCGAGTACGTGTGCTAGGGT+GGG | 0.622095 | 1.4:-30643823 | MS.gene064948:CDS |
| GTTGTCATCACCATCATCAT+CGG | 0.625480 | 1.4:+30644777 | None:intergenic |
| TGTTGATGATATTATGGCAG+AGG | 0.631230 | 1.4:-30644848 | MS.gene064948:CDS |
| TCTTTCAGCGTGCTTCTCTG+AGG | 0.632246 | 1.4:+30645471 | None:intergenic |
| GCTGAAATGTATATTCAACC+GGG | 0.649231 | 1.4:-30644516 | MS.gene064948:CDS |
| ATTAGAATTATACCTTACAG+TGG | 0.654416 | 1.4:+30644049 | None:intergenic |
| ACAACACATATCGAAAAGAG+AGG | 0.662380 | 1.4:-30643870 | MS.gene064948:CDS |
| TGATGATGACGACGATGATG+AGG | 0.667494 | 1.4:-30644914 | MS.gene064948:CDS |
| AAAGAAGAAGGTAAATGACG+AGG | 0.671120 | 1.4:-30644986 | MS.gene064948:CDS |
| CTTACAGTGGCAACACACAA+GGG | 0.686432 | 1.4:+30644062 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAGAAAAAAAAACAAT+TGG | + | chr1.4:30643806-30643825 | None:intergenic | 10.0% |
| !! | ATAGAAAAAAAAACAATTGG+AGG | + | chr1.4:30643803-30643822 | None:intergenic | 20.0% |
| !! | GTTAAGAAATGAAAAGTAAA+AGG | + | chr1.4:30644879-30644898 | None:intergenic | 20.0% |
| !! | TATTCCAAATAATGTTATCA+AGG | - | chr1.4:30645100-30645119 | MS.gene064948:CDS | 20.0% |
| !! | TCATAATTGTGAAAAATGAA+AGG | + | chr1.4:30645197-30645216 | None:intergenic | 20.0% |
| !! | TTTCAATATGTGTAAAAACA+AGG | + | chr1.4:30644163-30644182 | None:intergenic | 20.0% |
| !!! | AAATCCTTGATAACATTATT+TGG | + | chr1.4:30645107-30645126 | None:intergenic | 20.0% |
| !!! | ATATATTTTGCAATAAAGTG+TGG | + | chr1.4:30644729-30644748 | None:intergenic | 20.0% |
| !!! | ATTTACCTGATGATTTATTT+TGG | - | chr1.4:30644618-30644637 | MS.gene064948:intron | 20.0% |
| !!! | TTTTGATAAAAAAACCAGTT+TGG | - | chr1.4:30643825-30643844 | MS.gene064948:CDS | 20.0% |
| ! | AAAGAATTGTACCAATTCAT+TGG | + | chr1.4:30644763-30644782 | None:intergenic | 25.0% |
| ! | AAGAATTGTACCAATTCATT+GGG | + | chr1.4:30644762-30644781 | None:intergenic | 25.0% |
| ! | ATATGTGTTGTACTTATTTG+TGG | + | chr1.4:30645336-30645355 | None:intergenic | 25.0% |
| ! | ATATTGAAAACAACGTATTC+AGG | - | chr1.4:30644174-30644193 | MS.gene064948:intron | 25.0% |
| ! | ATTAGAATTATACCTTACAG+TGG | + | chr1.4:30645169-30645188 | None:intergenic | 25.0% |
| ! | CTAAACCAAAATAAATCATC+AGG | + | chr1.4:30644626-30644645 | None:intergenic | 25.0% |
| ! | GATGATGATTATGATTATGA+TGG | - | chr1.4:30644323-30644342 | MS.gene064948:intron | 25.0% |
| ! | GGAAAATAATAATATGATGG+AGG | - | chr1.4:30644253-30644272 | MS.gene064948:intron | 25.0% |
| ! | GGAGGAAAATAATAATATGA+TGG | - | chr1.4:30644250-30644269 | MS.gene064948:intron | 25.0% |
| ! | TAGAGATGAAAATTCTTTAG+AGG | - | chr1.4:30644127-30644146 | MS.gene064948:intron | 25.0% |
| ! | TTCCATGTCAAAAAAAGTAA+TGG | + | chr1.4:30644790-30644809 | None:intergenic | 25.0% |
| !! | AAAAAACTTTGAAGAAGTCT+GGG | + | chr1.4:30643724-30643743 | None:intergenic | 25.0% |
| !! | AGATCATGATGATGATATTA+TGG | - | chr1.4:30644394-30644413 | MS.gene064948:intron | 25.0% |
| !! | CTCAATCAACATTTTCAATA+TGG | + | chr1.4:30644956-30644975 | None:intergenic | 25.0% |
| !!! | AAGTTGAATTCATCCTTTTT+TGG | - | chr1.4:30645259-30645278 | MS.gene064948:intron | 25.0% |
| !!! | GATGATTTATTTTGGTTTAG+CGG | - | chr1.4:30644626-30644645 | MS.gene064948:intron | 25.0% |
| AAAAACAATTGGAGGAAGAA+TGG | + | chr1.4:30643795-30643814 | None:intergenic | 30.0% | |
| AAACTGAAATTGCAACAACT+TGG | + | chr1.4:30645008-30645027 | None:intergenic | 30.0% | |
| AATAAAGAGAATAACCAGAC+AGG | + | chr1.4:30644923-30644942 | None:intergenic | 30.0% | |
| AATACACTTATTAGACTCTG+AGG | + | chr1.4:30643888-30643907 | None:intergenic | 30.0% | |
| ATCAATGTGTGAAAAGAAGA+AGG | - | chr1.4:30644217-30644236 | MS.gene064948:intron | 30.0% | |
| ATGGAACAATCGAAATGTTA+AGG | - | chr1.4:30645484-30645503 | MS.gene064948:CDS | 30.0% | |
| CGAGAATGAAAGAATGTATA+AGG | - | chr1.4:30644463-30644482 | MS.gene064948:intron | 30.0% | |
| TATATCTTTGCATACCAAAC+TGG | + | chr1.4:30643842-30643861 | None:intergenic | 30.0% | |
| TGCTGAAATGTATATTCAAC+CGG | - | chr1.4:30644698-30644717 | MS.gene064948:intron | 30.0% | |
| TGGAACAATCGAAATGTTAA+GGG | - | chr1.4:30645485-30645504 | MS.gene064948:CDS | 30.0% | |
| ! | AGATGAAAATTCTTTAGAGG+AGG | - | chr1.4:30644130-30644149 | MS.gene064948:intron | 30.0% |
| ! | GAAAAAACTTTGAAGAAGTC+TGG | + | chr1.4:30643725-30643744 | None:intergenic | 30.0% |
| ! | TAATAATATGATGGAGGATG+AGG | - | chr1.4:30644259-30644278 | MS.gene064948:intron | 30.0% |
| !! | ATCAAGTTCACAAAAGCATT+AGG | + | chr1.4:30643987-30644006 | None:intergenic | 30.0% |
| !! | TCAAGTTCACAAAAGCATTA+GGG | + | chr1.4:30643986-30644005 | None:intergenic | 30.0% |
| !!! | GTCCATTACTTTTTTTGACA+TGG | - | chr1.4:30644785-30644804 | MS.gene064948:CDS | 30.0% |
| AAAGAAGAAGGTAAATGACG+AGG | - | chr1.4:30644229-30644248 | MS.gene064948:intron | 35.0% | |
| ACAACACATATCGAAAAGAG+AGG | - | chr1.4:30645345-30645364 | MS.gene064948:intron | 35.0% | |
| ACTTCAAATGTGAAGAGTGA+TGG | + | chr1.4:30645079-30645098 | None:intergenic | 35.0% | |
| CATTCAGAGTAATGACTTAG+CGG | - | chr1.4:30645293-30645312 | MS.gene064948:intron | 35.0% | |
| CTGAGGAGATAACATTACTT+GGG | + | chr1.4:30643871-30643890 | None:intergenic | 35.0% | |
| GCTGAAATGTATATTCAACC+GGG | - | chr1.4:30644699-30644718 | MS.gene064948:intron | 35.0% | |
| TCTGAGGAGATAACATTACT+TGG | + | chr1.4:30643872-30643891 | None:intergenic | 35.0% | |
| TGAACTTGATGCGTTCAAAA+AGG | - | chr1.4:30643997-30644016 | MS.gene064948:intron | 35.0% | |
| TGTCCTGTCATAACCAAAAA+AGG | + | chr1.4:30645275-30645294 | None:intergenic | 35.0% | |
| ! | TGACATGTTTTGTGAAGTAG+AGG | + | chr1.4:30645133-30645152 | None:intergenic | 35.0% |
| ! | TGATGATGATATTATGGCAG+AGG | - | chr1.4:30644400-30644419 | MS.gene064948:intron | 35.0% |
| !! | TGCTGCTGTTGATGATATTA+TGG | - | chr1.4:30644361-30644380 | MS.gene064948:intron | 35.0% |
| !! | TGTTGATGATATTATGGCAG+AGG | - | chr1.4:30644367-30644386 | MS.gene064948:intron | 35.0% |
| !!! | ATTTTGGTTTAGCGGACATT+GGG | - | chr1.4:30644634-30644653 | MS.gene064948:intron | 35.0% |
| !!! | CATCCTTTTTTGGTTATGAC+AGG | - | chr1.4:30645269-30645288 | MS.gene064948:intron | 35.0% |
| !!! | GATGAGCTTTATTTTGACGA+TGG | - | chr1.4:30644092-30644111 | MS.gene064948:CDS | 35.0% |
| !!! | TATTTTGGTTTAGCGGACAT+TGG | - | chr1.4:30644633-30644652 | MS.gene064948:intron | 35.0% |
| AAGACTAACTCCTCTACCTA+GGG | + | chr1.4:30644848-30644867 | None:intergenic | 40.0% | |
| ACTTGATGCGTTCAAAAAGG+AGG | - | chr1.4:30644000-30644019 | MS.gene064948:intron | 40.0% | |
| CAAGTACGTATATGGAGAGA+TGG | - | chr1.4:30645369-30645388 | MS.gene064948:intron | 40.0% | |
| CAGACAGGCATAAAGTACAA+AGG | + | chr1.4:30644908-30644927 | None:intergenic | 40.0% | |
| CATCATGATACCGATGATGA+TGG | - | chr1.4:30644428-30644447 | MS.gene064948:intron | 40.0% | |
| CATCTCTCCATATACGTACT+TGG | + | chr1.4:30645371-30645390 | None:intergenic | 40.0% | |
| CTCTTCGTCTACGATATCTT+AGG | + | chr1.4:30644043-30644062 | None:intergenic | 40.0% | |
| CTTGATGCGTTCAAAAAGGA+GGG | - | chr1.4:30644001-30644020 | MS.gene064948:intron | 40.0% | |
| CTTTGTACTTTATGCCTGTC+TGG | - | chr1.4:30644906-30644925 | MS.gene064948:CDS | 40.0% | |
| GATATCGTAGACGAAGAGAT+TGG | - | chr1.4:30644045-30644064 | MS.gene064948:intron | 40.0% | |
| GCAATAAAGTGTGGATTTCC+CGG | + | chr1.4:30644720-30644739 | None:intergenic | 40.0% | |
| GTTGTCATCACCATCATCAT+CGG | + | chr1.4:30644441-30644460 | None:intergenic | 40.0% | |
| TAAGACTAACTCCTCTACCT+AGG | + | chr1.4:30644849-30644868 | None:intergenic | 40.0% | |
| TCATTCCAGACCCAATGAAT+TGG | - | chr1.4:30644749-30644768 | MS.gene064948:CDS | 40.0% | |
| TTGTACCAATTCATTGGGTC+TGG | + | chr1.4:30644757-30644776 | None:intergenic | 40.0% | |
| TTGTGGCAAGATGTGATGAT+AGG | + | chr1.4:30645319-30645338 | None:intergenic | 40.0% | |
| ! | TGTTAAGGGTGCACATTGTT+AGG | - | chr1.4:30645499-30645518 | MS.gene064948:CDS | 40.0% |
| !! | TTGCAACAACTTGGCTTGTT+TGG | + | chr1.4:30644999-30645018 | None:intergenic | 40.0% |
| !!! | AGCTTTATTTTGACGATGGC+TGG | - | chr1.4:30644096-30644115 | MS.gene064948:CDS | 40.0% |
| AGAGAGGCCAAGTACGTATA+TGG | - | chr1.4:30645361-30645380 | MS.gene064948:intron | 45.0% | |
| ATTTGCTCAACCCTAGGTAG+AGG | - | chr1.4:30644835-30644854 | MS.gene064948:CDS | 45.0% | |
| CATGTCAAAGCTCGTCGTAT+TGG | - | chr1.4:30644068-30644087 | MS.gene064948:CDS | 45.0% | |
| CTTACAGTGGCAACACACAA+GGG | + | chr1.4:30645156-30645175 | None:intergenic | 45.0% | |
| GAAGAAGGTAAATGACGAGG+AGG | - | chr1.4:30644232-30644251 | MS.gene064948:intron | 45.0% | |
| GAAGAAGTCTGGGTAATCCT+TGG | + | chr1.4:30643714-30643733 | None:intergenic | 45.0% | |
| GATGAGGAAGAGGACAATGA+TGG | - | chr1.4:30644275-30644294 | MS.gene064948:intron | 45.0% | |
| TAGTCCATTTGCTCAACCCT+AGG | - | chr1.4:30644829-30644848 | MS.gene064948:CDS | 45.0% | |
| TCTACCTAGGGTTGAGCAAA+TGG | + | chr1.4:30644836-30644855 | None:intergenic | 45.0% | |
| ! | AAGGGTGCACATTGTTAGGA+AGG | - | chr1.4:30645503-30645522 | MS.gene064948:CDS | 45.0% |
| ! | AGAGAAGCACGCTGAAAGAA+TGG | - | chr1.4:30643748-30643767 | MS.gene064948:CDS | 45.0% |
| ! | CTAGGGTGGGAAGATTTTTG+TGG | - | chr1.4:30645405-30645424 | MS.gene064948:intron | 45.0% |
| ! | TATGATGGAGGATGAGGAAG+AGG | - | chr1.4:30644265-30644284 | MS.gene064948:intron | 45.0% |
| ! | TGATGATGACGACGATGATG+AGG | - | chr1.4:30644301-30644320 | MS.gene064948:intron | 45.0% |
| AGAACCTGCAAGTGCAAAGC+TGG | - | chr1.4:30644515-30644534 | MS.gene064948:CDS | 50.0% | |
| ATGGTCGAGTACGTGTGCTA+GGG | - | chr1.4:30645388-30645407 | MS.gene064948:intron | 50.0% | |
| CCTTACAGTGGCAACACACA+AGG | + | chr1.4:30645157-30645176 | None:intergenic | 50.0% | |
| CCTTGTGTGTTGCCACTGTA+AGG | - | chr1.4:30645154-30645173 | MS.gene064948:CDS | 50.0% | |
| CTTACCAGCTTTGCACTTGC+AGG | + | chr1.4:30644522-30644541 | None:intergenic | 50.0% | |
| GAGATTGTGCTGCGTGAAGA+TGG | - | chr1.4:30645465-30645484 | MS.gene064948:intron | 50.0% | |
| TCTTTCAGCGTGCTTCTCTG+AGG | + | chr1.4:30643747-30643766 | None:intergenic | 50.0% | |
| GATGGTCGAGTACGTGTGCT+AGG | - | chr1.4:30645387-30645406 | MS.gene064948:intron | 55.0% | |
| TCGAGTACGTGTGCTAGGGT+GGG | - | chr1.4:30645392-30645411 | MS.gene064948:intron | 55.0% | |
| GTCGAGTACGTGTGCTAGGG+TGG | - | chr1.4:30645391-30645410 | MS.gene064948:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 30643707 | 30645530 | 30643707 | ID=MS.gene064948 |
| chr1.4 | mRNA | 30643707 | 30645530 | 30643707 | ID=MS.gene064948.t1;Parent=MS.gene064948 |
| chr1.4 | exon | 30645468 | 30645530 | 30645468 | ID=MS.gene064948.t1.exon1;Parent=MS.gene064948.t1 |
| chr1.4 | CDS | 30645468 | 30645530 | 30645468 | ID=cds.MS.gene064948.t1;Parent=MS.gene064948.t1 |
| chr1.4 | exon | 30644701 | 30645259 | 30644701 | ID=MS.gene064948.t1.exon2;Parent=MS.gene064948.t1 |
| chr1.4 | CDS | 30644701 | 30645259 | 30644701 | ID=cds.MS.gene064948.t1;Parent=MS.gene064948.t1 |
| chr1.4 | exon | 30644467 | 30644591 | 30644467 | ID=MS.gene064948.t1.exon3;Parent=MS.gene064948.t1 |
| chr1.4 | CDS | 30644467 | 30644591 | 30644467 | ID=cds.MS.gene064948.t1;Parent=MS.gene064948.t1 |
| chr1.4 | exon | 30644062 | 30644139 | 30644062 | ID=MS.gene064948.t1.exon4;Parent=MS.gene064948.t1 |
| chr1.4 | CDS | 30644062 | 30644139 | 30644062 | ID=cds.MS.gene064948.t1;Parent=MS.gene064948.t1 |
| chr1.4 | exon | 30643707 | 30643946 | 30643707 | ID=MS.gene064948.t1.exon5;Parent=MS.gene064948.t1 |
| chr1.4 | CDS | 30643707 | 30643946 | 30643707 | ID=cds.MS.gene064948.t1;Parent=MS.gene064948.t1 |
| Gene Sequence |
| Protein sequence |
