Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064949.t1 | XP_013467138.1 | 89.2 | 342 | 18 | 2 | 1 | 341 | 1 | 324 | 7.30E-140 | 506.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064949.t1 | Q9M8K2 | 28.7 | 334 | 206 | 5 | 6 | 339 | 23 | 324 | 5.6e-08 | 60.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064949.t1 | A0A072VGJ6 | 89.2 | 342 | 18 | 2 | 1 | 341 | 1 | 324 | 5.2e-140 | 506.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene064949.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064949.t1 | MTR_1g046200 | 80.702 | 342 | 47 | 2 | 1 | 341 | 1 | 324 | 0.0 | 515 |
| MS.gene064949.t1 | MTR_1g046320 | 65.192 | 339 | 108 | 2 | 2 | 340 | 5 | 333 | 1.29e-149 | 424 |
| MS.gene064949.t1 | MTR_1g046340 | 61.919 | 344 | 114 | 5 | 2 | 341 | 5 | 335 | 2.35e-135 | 388 |
| MS.gene064949.t1 | MTR_3g088515 | 52.479 | 242 | 98 | 4 | 2 | 236 | 16 | 247 | 3.25e-62 | 199 |
| MS.gene064949.t1 | MTR_1g021330 | 32.039 | 103 | 66 | 2 | 9 | 109 | 26 | 126 | 8.77e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064949.t1 | AT3G06160 | 23.054 | 334 | 225 | 5 | 6 | 339 | 23 | 324 | 2.57e-21 | 93.6 |
| MS.gene064949.t1 | AT3G06160 | 23.054 | 334 | 225 | 5 | 6 | 339 | 8 | 309 | 3.45e-21 | 92.8 |
| MS.gene064949.t1 | AT3G06160 | 23.054 | 334 | 225 | 5 | 6 | 339 | 8 | 309 | 3.45e-21 | 92.8 |
| MS.gene064949.t1 | AT3G06160 | 23.054 | 334 | 225 | 5 | 6 | 339 | 8 | 309 | 3.45e-21 | 92.8 |
| MS.gene064949.t1 | AT3G06160 | 23.054 | 334 | 225 | 5 | 6 | 339 | 67 | 368 | 3.89e-21 | 93.6 |
| MS.gene064949.t1 | AT5G57720 | 22.063 | 349 | 199 | 14 | 5 | 339 | 10 | 299 | 2.06e-14 | 73.2 |
| MS.gene064949.t1 | AT3G18960 | 37.624 | 101 | 59 | 3 | 8 | 107 | 30 | 127 | 5.88e-12 | 64.7 |
| MS.gene064949.t1 | AT3G18960 | 37.624 | 101 | 59 | 3 | 8 | 107 | 30 | 127 | 6.00e-12 | 64.3 |
| MS.gene064949.t1 | AT3G53310 | 23.837 | 344 | 187 | 10 | 5 | 340 | 8 | 284 | 1.13e-11 | 65.1 |
| MS.gene064949.t1 | AT1G49475 | 31.159 | 138 | 88 | 4 | 8 | 141 | 34 | 168 | 2.15e-11 | 62.8 |
| MS.gene064949.t1 | AT4G01580 | 36.364 | 99 | 59 | 3 | 8 | 105 | 30 | 125 | 2.32e-11 | 62.8 |
| MS.gene064949.t1 | AT3G18960 | 38.372 | 86 | 50 | 2 | 22 | 107 | 8 | 90 | 9.11e-11 | 60.5 |
Find 56 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAATGAAGTGTGGATTTC+CGG | 0.187944 | 1.4:+30679852 | None:intergenic |
| AAATCCTTGGTAACATTCTT+TGG | 0.207127 | 1.4:+30679515 | None:intergenic |
| TGTTAAGGGTGCACATTGTT+AGG | 0.310846 | 1.4:-30679114 | MS.gene064949:CDS |
| TGCTGATGATGATGATATTA+TGG | 0.320629 | 1.4:-30680173 | MS.gene064949:CDS |
| CTTACCAGCTTTGCACTTGC+AGG | 0.327904 | 1.4:+30680051 | None:intergenic |
| AAGAATTGTACCAATTCATT+AGG | 0.342988 | 1.4:+30679811 | None:intergenic |
| TAGAGACGAAAATTCTTTAG+AGG | 0.344242 | 1.4:-30680404 | MS.gene064949:CDS |
| CGAGAATGAAAGAATGTATA+AGG | 0.350460 | 1.4:-30680107 | MS.gene064949:CDS |
| ATCAAGTTCACAAAAGCATT+AGG | 0.355825 | 1.4:+30680547 | None:intergenic |
| TGAACTTGATGCGTTCAAAA+AGG | 0.358189 | 1.4:-30680534 | MS.gene064949:CDS |
| CTCTTCCTCTACGATCTCTT+AGG | 0.380260 | 1.4:+30680491 | None:intergenic |
| CGTGGAGGAAAATAACATTA+TGG | 0.382235 | 1.4:-30680287 | MS.gene064949:CDS |
| TTGTACCAATTCATTAGGTC+TGG | 0.410085 | 1.4:+30679816 | None:intergenic |
| GCAATGAAGTGTGGATTTCC+GGG | 0.417877 | 1.4:+30679853 | None:intergenic |
| ATATTGAAAATAACATATTC+AGG | 0.423216 | 1.4:-30680357 | MS.gene064949:CDS |
| ATATGTGTTCTGCTTATTTG+TGG | 0.425629 | 1.4:+30679280 | None:intergenic |
| TCAAGTTCACAAAAGCATTA+GGG | 0.428525 | 1.4:+30680548 | None:intergenic |
| TCATTCCAGACCTAATGAAT+TGG | 0.430343 | 1.4:-30679821 | MS.gene064949:intron |
| CCTTGCAGTGGCAACATTCA+AGG | 0.435374 | 1.4:+30679465 | None:intergenic |
| CATCTCTCCACGTACGTACT+TGG | 0.449196 | 1.4:+30679245 | None:intergenic |
| CATGTCAAAGCTCGTCGTAT+TGG | 0.455772 | 1.4:-30680463 | MS.gene064949:CDS |
| ATCATCAATGTGTGAAAAGA+AGG | 0.465520 | 1.4:-30680317 | MS.gene064949:CDS |
| GATGGTCGAGTACGTGTGCT+AGG | 0.481978 | 1.4:-30679226 | MS.gene064949:CDS |
| TTGTGGCAAGATGTGATGAT+AGG | 0.486090 | 1.4:+30679297 | None:intergenic |
| GAGATCGTAGAGGAAGAGAT+TGG | 0.486399 | 1.4:-30680486 | MS.gene064949:CDS |
| GTCGAGTACGTGTGCTAGGG+TGG | 0.503803 | 1.4:-30679222 | MS.gene064949:CDS |
| AGAACCTGCAAGTGCAAAGC+TGG | 0.504053 | 1.4:-30680055 | MS.gene064949:intron |
| CATTATGGAGGATGAGGAAG+AGG | 0.504320 | 1.4:-30680272 | MS.gene064949:CDS |
| AAATAACATTATGGAGGATG+AGG | 0.510675 | 1.4:-30680278 | MS.gene064949:CDS |
| GATGAGGAAGAGGACGATGA+TGG | 0.534431 | 1.4:-30680262 | MS.gene064949:CDS |
| AGAGAAGCACACTGAAAGAA+TGG | 0.539987 | 1.4:-30680736 | MS.gene064949:intron |
| TCTTTCAGTGTGCTTCTCTG+TGG | 0.540953 | 1.4:+30680740 | None:intergenic |
| AAGGGTGCACATTGTTAGGA+AGG | 0.552584 | 1.4:-30679110 | MS.gene064949:CDS |
| GAAGCAGAGGCAGAAATCCT+TGG | 0.555687 | 1.4:+30679502 | None:intergenic |
| AGACGAAAATTCTTTAGAGG+AGG | 0.570120 | 1.4:-30680401 | MS.gene064949:CDS |
| GAGATTGTGCTGCGTGAAGA+TGG | 0.578226 | 1.4:-30679148 | MS.gene064949:CDS |
| CTTGCAGTGGCAACATTCAA+GGG | 0.578433 | 1.4:+30679466 | None:intergenic |
| CAAGTACGTACGTGGAGAGA+TGG | 0.582116 | 1.4:-30679244 | MS.gene064949:CDS |
| AATTGTAACTAAGATGGCTA+AGG | 0.582612 | 1.4:-30680790 | None:intergenic |
| CCTTGAATGTTGCCACTGCA+AGG | 0.583961 | 1.4:-30679465 | MS.gene064949:intron |
| CATCATGATACCGATGATGA+TGG | 0.600687 | 1.4:-30680139 | MS.gene064949:CDS |
| GTCGTCATCACCATCATCAT+CGG | 0.606956 | 1.4:+30680129 | None:intergenic |
| GATGATGATGATGACGATGA+TGG | 0.609949 | 1.4:-30680238 | MS.gene064949:CDS |
| ATGGTCGAGTACGTGTGCTA+GGG | 0.616130 | 1.4:-30679225 | MS.gene064949:CDS |
| TATTCCAAAGAATGTTACCA+AGG | 0.618799 | 1.4:-30679519 | MS.gene064949:CDS |
| TCGAGTACGTGTGCTAGGGT+GGG | 0.622095 | 1.4:-30679221 | MS.gene064949:CDS |
| TGATGATGATATTATGGCAG+AGG | 0.629976 | 1.4:-30680167 | MS.gene064949:CDS |
| AGAGAGGCCAAGTACGTACG+TGG | 0.642453 | 1.4:-30679252 | MS.gene064949:CDS |
| GGAGGAAAATAACATTATGG+AGG | 0.646777 | 1.4:-30680284 | MS.gene064949:CDS |
| GCTGAAATGTATATTCAACC+CGG | 0.655563 | 1.4:-30679871 | MS.gene064949:CDS |
| AATTATACCATACCTTGCAG+TGG | 0.659231 | 1.4:+30679453 | None:intergenic |
| AAAGAAGGTAAGTGACGTGG+AGG | 0.663441 | 1.4:-30680302 | MS.gene064949:CDS |
| AGAACACATATCGAAAAGAG+AGG | 0.666945 | 1.4:-30679268 | MS.gene064949:CDS |
| TGAAAAGAAGGTAAGTGACG+TGG | 0.709154 | 1.4:-30680305 | MS.gene064949:CDS |
| TTTATCCTAAGAGATCGTAG+AGG | 0.735718 | 1.4:-30680496 | MS.gene064949:CDS |
| GATGATGGTGATGATGATGA+CGG | 0.739073 | 1.4:-30680223 | MS.gene064949:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTGAAAATAACATATTC+AGG | - | chr1.4:30679525-30679544 | MS.gene064949:intron | 15.0% |
| !!! | TTTTTCAAAAAGGAATAAAA+AGG | + | chr1.4:30679201-30679220 | None:intergenic | 15.0% |
| !! | CATGTCAAAAAAAAAAGTAA+TGG | + | chr1.4:30680102-30680121 | None:intergenic | 20.0% |
| !! | TCATAATAGTGAAAAATGAA+AGG | + | chr1.4:30680465-30680484 | None:intergenic | 20.0% |
| !! | TTTCAATATGTGTAAAAACA+AGG | + | chr1.4:30679514-30679533 | None:intergenic | 20.0% |
| !!! | ATTTACCTGATGATTTATTT+TGG | - | chr1.4:30679930-30679949 | MS.gene064949:intron | 20.0% |
| !!! | CAAATTGGTTTTTTTCAAAA+AGG | + | chr1.4:30679211-30679230 | None:intergenic | 20.0% |
| !!! | CATTACTTTTTTTTTTGACA+TGG | - | chr1.4:30680100-30680119 | MS.gene064949:CDS | 20.0% |
| !!! | CTTTTTGAAAAAAACCAATT+TGG | - | chr1.4:30679209-30679228 | MS.gene064949:CDS | 20.0% |
| ! | AAACTAAAATTGCAACAACT+TGG | + | chr1.4:30680271-30680290 | None:intergenic | 25.0% |
| ! | AAGAATTGTACCAATTCATT+AGG | + | chr1.4:30680074-30680093 | None:intergenic | 25.0% |
| ! | AATTAAGAGAATAACTAGAC+AGG | + | chr1.4:30680238-30680257 | None:intergenic | 25.0% |
| ! | ATCAACACATTAAACAAAAG+TGG | + | chr1.4:30680496-30680515 | None:intergenic | 25.0% |
| ! | ATGGAAAAATCGAAATGTTA+AGG | - | chr1.4:30680753-30680772 | MS.gene064949:CDS | 25.0% |
| ! | CTAAACCAAAATAAATCATC+AGG | + | chr1.4:30679938-30679957 | None:intergenic | 25.0% |
| ! | GAAAAATGAAAGGTAAAGAT+TGG | + | chr1.4:30680455-30680474 | None:intergenic | 25.0% |
| ! | TATTTCTTTGCATACCAAAT+TGG | + | chr1.4:30679226-30679245 | None:intergenic | 25.0% |
| ! | TGGAAAAATCGAAATGTTAA+GGG | - | chr1.4:30680754-30680773 | MS.gene064949:CDS | 25.0% |
| !! | AAAAAACTTTGAAGAAGTCT+GGG | + | chr1.4:30679122-30679141 | None:intergenic | 25.0% |
| !! | ATATATTTTGCAATGAAGTG+TGG | + | chr1.4:30680041-30680060 | None:intergenic | 25.0% |
| !! | CATTTTTCACTATTATGAAG+TGG | - | chr1.4:30680467-30680486 | MS.gene064949:CDS | 25.0% |
| !!! | GATGATTTATTTTGGTTTAG+CGG | - | chr1.4:30679938-30679957 | MS.gene064949:intron | 25.0% |
| AAAGGAATAAAAAGGAAGCA+TGG | + | chr1.4:30679193-30679212 | None:intergenic | 30.0% | |
| AAATAACATTATGGAGGATG+AGG | - | chr1.4:30679604-30679623 | MS.gene064949:intron | 30.0% | |
| ATATGTGTTCTGCTTATTTG+TGG | + | chr1.4:30680605-30680624 | None:intergenic | 30.0% | |
| ATCATCAATGTGTGAAAAGA+AGG | - | chr1.4:30679565-30679584 | MS.gene064949:intron | 30.0% | |
| CGAGAATGAAAGAATGTATA+AGG | - | chr1.4:30679775-30679794 | MS.gene064949:intron | 30.0% | |
| TAGAGACGAAAATTCTTTAG+AGG | - | chr1.4:30679478-30679497 | MS.gene064949:CDS | 30.0% | |
| TATTCCAAAGAATGTTACCA+AGG | - | chr1.4:30680363-30680382 | MS.gene064949:CDS | 30.0% | |
| TTCAAAAAGGAAGGTCATAA+AGG | - | chr1.4:30679361-30679380 | MS.gene064949:intron | 30.0% | |
| ! | AAATCCTTGGTAACATTCTT+TGG | + | chr1.4:30680370-30680389 | None:intergenic | 30.0% |
| ! | GAAAAAACTTTGAAGAAGTC+TGG | + | chr1.4:30679123-30679142 | None:intergenic | 30.0% |
| ! | TGCTGATGATGATGATATTA+TGG | - | chr1.4:30679709-30679728 | MS.gene064949:intron | 30.0% |
| !! | ATCAAGTTCACAAAAGCATT+AGG | + | chr1.4:30679338-30679357 | None:intergenic | 30.0% |
| !! | TCAAGTTCACAAAAGCATTA+GGG | + | chr1.4:30679337-30679356 | None:intergenic | 30.0% |
| !!! | AAGTTGCATTCATCCTTTTT+TGG | - | chr1.4:30680528-30680547 | MS.gene064949:CDS | 30.0% |
| AATTATACCATACCTTGCAG+TGG | + | chr1.4:30680432-30680451 | None:intergenic | 35.0% | |
| ACTTCAAATGTGAAGAGTGA+TGG | + | chr1.4:30680342-30680361 | None:intergenic | 35.0% | |
| AGAACACATATCGAAAAGAG+AGG | - | chr1.4:30680614-30680633 | MS.gene064949:intron | 35.0% | |
| CGTGGAGGAAAATAACATTA+TGG | - | chr1.4:30679595-30679614 | MS.gene064949:intron | 35.0% | |
| GATAAGAAATGACAAGTCGA+AGG | + | chr1.4:30680194-30680213 | None:intergenic | 35.0% | |
| GCTGAAATGTATATTCAACC+CGG | - | chr1.4:30680011-30680030 | MS.gene064949:intron | 35.0% | |
| GGAGGAAAATAACATTATGG+AGG | - | chr1.4:30679598-30679617 | MS.gene064949:intron | 35.0% | |
| TCATTCCAGACCTAATGAAT+TGG | - | chr1.4:30680061-30680080 | MS.gene064949:CDS | 35.0% | |
| TGAACTTGATGCGTTCAAAA+AGG | - | chr1.4:30679348-30679367 | MS.gene064949:intron | 35.0% | |
| TGTCCTGTCATAACCAAAAA+AGG | + | chr1.4:30680544-30680563 | None:intergenic | 35.0% | |
| TTGTACCAATTCATTAGGTC+TGG | + | chr1.4:30680069-30680088 | None:intergenic | 35.0% | |
| TTTATCCTAAGAGATCGTAG+AGG | - | chr1.4:30679386-30679405 | MS.gene064949:intron | 35.0% | |
| ! | AGACGAAAATTCTTTAGAGG+AGG | - | chr1.4:30679481-30679500 | MS.gene064949:CDS | 35.0% |
| ! | TGATGATGATATTATGGCAG+AGG | - | chr1.4:30679715-30679734 | MS.gene064949:intron | 35.0% |
| !!! | AGCTTTATTTTGACGATGGT+TGG | - | chr1.4:30679447-30679466 | MS.gene064949:intron | 35.0% |
| !!! | ATTTTGGTTTAGCGGACATT+GGG | - | chr1.4:30679946-30679965 | MS.gene064949:intron | 35.0% |
| !!! | CATCCTTTTTTGGTTATGAC+AGG | - | chr1.4:30680538-30680557 | MS.gene064949:CDS | 35.0% |
| !!! | GATGAGCTTTATTTTGACGA+TGG | - | chr1.4:30679443-30679462 | MS.gene064949:intron | 35.0% |
| !!! | TATTTTGGTTTAGCGGACAT+TGG | - | chr1.4:30679945-30679964 | MS.gene064949:intron | 35.0% |
| ATTTGCTTAACCCTAGGTAG+AGG | - | chr1.4:30680150-30680169 | MS.gene064949:CDS | 40.0% | |
| CATCATGATACCGATGATGA+TGG | - | chr1.4:30679743-30679762 | MS.gene064949:intron | 40.0% | |
| CTTGATGCGTTCAAAAAGGA+AGG | - | chr1.4:30679352-30679371 | MS.gene064949:intron | 40.0% | |
| TAGACAGGCATAGAGTACAA+AGG | + | chr1.4:30680223-30680242 | None:intergenic | 40.0% | |
| TAGTCCATTTGCTTAACCCT+AGG | - | chr1.4:30680144-30680163 | MS.gene064949:CDS | 40.0% | |
| TCTACCTAGGGTTAAGCAAA+TGG | + | chr1.4:30680151-30680170 | None:intergenic | 40.0% | |
| TGAAAAGAAGGTAAGTGACG+TGG | - | chr1.4:30679577-30679596 | MS.gene064949:intron | 40.0% | |
| TGCAATGAAGTGTGGATTTC+CGG | + | chr1.4:30680033-30680052 | None:intergenic | 40.0% | |
| TTGTGGCAAGATGTGATGAT+AGG | + | chr1.4:30680588-30680607 | None:intergenic | 40.0% | |
| ! | AGAGAAGCACACTGAAAGAA+TGG | - | chr1.4:30679146-30679165 | MS.gene064949:CDS | 40.0% |
| ! | GATGATGATGATGACGATGA+TGG | - | chr1.4:30679644-30679663 | MS.gene064949:intron | 40.0% |
| ! | GATGATGGTGATGATGATGA+CGG | - | chr1.4:30679635-30679654 | MS.gene064949:intron | 40.0% |
| ! | TGACATGTTTTGTGAAGCAG+AGG | + | chr1.4:30680396-30680415 | None:intergenic | 40.0% |
| ! | TGTTAAGGGTGCACATTGTT+AGG | - | chr1.4:30680768-30680787 | MS.gene064949:CDS | 40.0% |
| AAAGAAGGTAAGTGACGTGG+AGG | - | chr1.4:30679580-30679599 | MS.gene064949:intron | 45.0% | |
| AATGTTGCCACTGCAAGGTA+TGG | - | chr1.4:30680422-30680441 | MS.gene064949:CDS | 45.0% | |
| CATGTCAAAGCTCGTCGTAT+TGG | - | chr1.4:30679419-30679438 | MS.gene064949:intron | 45.0% | |
| CATTATGGAGGATGAGGAAG+AGG | - | chr1.4:30679610-30679629 | MS.gene064949:intron | 45.0% | |
| CTCTTCCTCTACGATCTCTT+AGG | + | chr1.4:30679394-30679413 | None:intergenic | 45.0% | |
| CTTGCAGTGGCAACATTCAA+GGG | + | chr1.4:30680419-30680438 | None:intergenic | 45.0% | |
| GAGATCGTAGAGGAAGAGAT+TGG | - | chr1.4:30679396-30679415 | MS.gene064949:intron | 45.0% | |
| GCAATGAAGTGTGGATTTCC+GGG | + | chr1.4:30680032-30680051 | None:intergenic | 45.0% | |
| GTCGTCATCACCATCATCAT+CGG | + | chr1.4:30679756-30679775 | None:intergenic | 45.0% | |
| TCGACTAACTCCTCTACCTA+GGG | + | chr1.4:30680163-30680182 | None:intergenic | 45.0% | |
| TCTTTCAGTGTGCTTCTCTG+TGG | + | chr1.4:30679145-30679164 | None:intergenic | 45.0% | |
| TTCGACTAACTCCTCTACCT+AGG | + | chr1.4:30680164-30680183 | None:intergenic | 45.0% | |
| ! | AAGGGTGCACATTGTTAGGA+AGG | - | chr1.4:30680772-30680791 | MS.gene064949:CDS | 45.0% |
| AGAACCTGCAAGTGCAAAGC+TGG | - | chr1.4:30679827-30679846 | MS.gene064949:CDS | 50.0% | |
| ATGGTCGAGTACGTGTGCTA+GGG | - | chr1.4:30680657-30680676 | MS.gene064949:intron | 50.0% | |
| CAAGTACGTACGTGGAGAGA+TGG | - | chr1.4:30680638-30680657 | MS.gene064949:intron | 50.0% | |
| CATCTCTCCACGTACGTACT+TGG | + | chr1.4:30680640-30680659 | None:intergenic | 50.0% | |
| CCTTGAATGTTGCCACTGCA+AGG | - | chr1.4:30680417-30680436 | MS.gene064949:CDS | 50.0% | |
| CCTTGCAGTGGCAACATTCA+AGG | + | chr1.4:30680420-30680439 | None:intergenic | 50.0% | |
| CTTACCAGCTTTGCACTTGC+AGG | + | chr1.4:30679834-30679853 | None:intergenic | 50.0% | |
| GAAGCAGAGGCAGAAATCCT+TGG | + | chr1.4:30680383-30680402 | None:intergenic | 50.0% | |
| GAGATTGTGCTGCGTGAAGA+TGG | - | chr1.4:30680734-30680753 | MS.gene064949:intron | 50.0% | |
| GATGAGGAAGAGGACGATGA+TGG | - | chr1.4:30679620-30679639 | MS.gene064949:intron | 50.0% | |
| AGAGAGGCCAAGTACGTACG+TGG | - | chr1.4:30680630-30680649 | MS.gene064949:intron | 55.0% | |
| GATGGTCGAGTACGTGTGCT+AGG | - | chr1.4:30680656-30680675 | MS.gene064949:intron | 55.0% | |
| TCGAGTACGTGTGCTAGGGT+GGG | - | chr1.4:30680661-30680680 | MS.gene064949:intron | 55.0% | |
| GTCGAGTACGTGTGCTAGGG+TGG | - | chr1.4:30680660-30680679 | MS.gene064949:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 30679105 | 30680799 | 30679105 | ID=MS.gene064949 |
| chr1.4 | mRNA | 30679105 | 30680799 | 30679105 | ID=MS.gene064949.t1;Parent=MS.gene064949 |
| chr1.4 | exon | 30680737 | 30680799 | 30680737 | ID=MS.gene064949.t1.exon1;Parent=MS.gene064949.t1 |
| chr1.4 | CDS | 30680737 | 30680799 | 30680737 | ID=cds.MS.gene064949.t1;Parent=MS.gene064949.t1 |
| chr1.4 | exon | 30680056 | 30680575 | 30680056 | ID=MS.gene064949.t1.exon2;Parent=MS.gene064949.t1 |
| chr1.4 | CDS | 30680056 | 30680575 | 30680056 | ID=cds.MS.gene064949.t1;Parent=MS.gene064949.t1 |
| chr1.4 | exon | 30679822 | 30679946 | 30679822 | ID=MS.gene064949.t1.exon3;Parent=MS.gene064949.t1 |
| chr1.4 | CDS | 30679822 | 30679946 | 30679822 | ID=cds.MS.gene064949.t1;Parent=MS.gene064949.t1 |
| chr1.4 | exon | 30679466 | 30679543 | 30679466 | ID=MS.gene064949.t1.exon4;Parent=MS.gene064949.t1 |
| chr1.4 | CDS | 30679466 | 30679543 | 30679466 | ID=cds.MS.gene064949.t1;Parent=MS.gene064949.t1 |
| chr1.4 | exon | 30679105 | 30679344 | 30679105 | ID=MS.gene064949.t1.exon5;Parent=MS.gene064949.t1 |
| chr1.4 | CDS | 30679105 | 30679344 | 30679105 | ID=cds.MS.gene064949.t1;Parent=MS.gene064949.t1 |
| Gene Sequence |
| Protein sequence |
