AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene065104

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene065104.t1 MTR_1g111310 88.372 387 32 2 49 427 327 708 0.0 672
MS.gene065104.t1 MTR_1g111310 85.841 339 35 3 82 420 1 326 0.0 544
MS.gene065104.t1 MTR_5g054900 54.430 474 154 14 1 426 1 460 1.76e-157 452
MS.gene065104.t1 MTR_5g054900 57.110 429 138 12 35 426 15 434 3.76e-155 446
MS.gene065104.t1 MTR_5g054900 70.667 300 79 3 131 426 59 353 3.68e-151 432
MS.gene065104.t1 MTR_5g054900 69.667 300 78 4 131 426 59 349 2.55e-146 420
MS.gene065104.t1 MTR_7g089800 51.049 429 180 6 23 426 29 452 7.43e-143 415
MS.gene065104.t1 MTR_7g089800 51.415 424 176 6 28 426 5 423 1.08e-142 414
MS.gene065104.t1 MTR_8g040120 60.857 350 116 7 81 426 134 466 1.59e-141 412
MS.gene065104.t1 MTR_3g044820 87.437 199 19 2 105 297 10 208 1.42e-124 360
MS.gene065104.t1 MTR_7g092750 48.916 323 152 3 117 426 40 362 2.01e-110 329
MS.gene065104.t1 MTR_7g092750 48.916 323 152 3 117 426 141 463 1.97e-109 330
MS.gene065104.t1 MTR_3g087940 52.980 302 129 3 134 426 64 361 1.15e-107 322
MS.gene065104.t1 MTR_2g086420 52.265 287 126 2 140 426 193 468 1.38e-105 322
MS.gene065104.t1 MTR_2g086420 52.265 287 126 2 140 426 194 469 1.59e-105 322
MS.gene065104.t1 MTR_4g053250 51.316 304 128 4 129 426 172 461 6.11e-102 312
MS.gene065104.t1 MTR_1g111320 88.957 163 13 1 49 211 60 217 8.15e-98 292
MS.gene065104.t1 MTR_0126s0080 56.967 244 101 3 140 379 216 459 1.15e-94 293
MS.gene065104.t1 MTR_7g092750 44.272 323 141 4 117 426 141 437 2.92e-91 283
MS.gene065104.t1 MTR_8g091650 46.479 284 147 3 143 426 5 283 6.34e-85 261
MS.gene065104.t1 MTR_8g091650 46.341 287 149 3 140 426 75 356 9.08e-85 263
MS.gene065104.t1 MTR_8g091650 46.341 287 149 3 140 426 111 392 3.90e-84 263
MS.gene065104.t1 MTR_5g060950 47.872 282 141 3 140 420 67 343 7.14e-83 258
MS.gene065104.t1 MTR_3g073560 45.215 303 156 4 125 424 50 345 1.70e-82 265
MS.gene065104.t1 MTR_1g090370 32.161 199 107 6 216 408 41 217 7.67e-20 88.2
MS.gene065104.t1 MTR_2g076140 25.571 219 126 4 217 415 8 209 1.23e-13 70.5
MS.gene065104.t1 MTR_8g094690 24.082 245 154 5 201 413 3 247 4.79e-13 69.3
MS.gene065104.t1 MTR_7g068860 23.853 218 159 4 206 416 2 219 4.44e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene065104.t1 AT1G68640 53.474 475 144 9 3 426 4 452 1.78e-148 429
MS.gene065104.t1 AT5G06950 61.392 316 111 6 116 426 21 330 2.96e-131 381
MS.gene065104.t1 AT5G06950 61.392 316 111 6 116 426 21 330 2.96e-131 381
MS.gene065104.t1 AT5G06950 61.392 316 111 6 116 426 21 330 2.96e-131 381
MS.gene065104.t1 AT5G06950 61.392 316 111 6 116 426 21 330 2.96e-131 381
MS.gene065104.t1 AT5G06950 61.392 316 111 6 116 426 21 330 2.96e-131 381
MS.gene065104.t1 AT3G12250 57.184 348 128 7 82 426 1 330 4.47e-130 378
MS.gene065104.t1 AT3G12250 57.184 348 128 7 82 426 1 330 4.47e-130 378
MS.gene065104.t1 AT3G12250 57.184 348 128 7 82 426 1 330 4.47e-130 378
MS.gene065104.t1 AT3G12250 57.184 348 128 7 82 426 1 330 4.47e-130 378
MS.gene065104.t1 AT3G12250 62.759 290 100 3 140 426 19 303 2.68e-128 373
MS.gene065104.t1 AT3G12250 62.759 290 100 3 140 426 40 324 8.73e-128 372
MS.gene065104.t1 AT3G12250 54.545 363 139 6 82 426 1 355 2.18e-127 372
MS.gene065104.t1 AT5G06960 61.379 290 104 3 140 426 46 330 2.57e-121 356
MS.gene065104.t1 AT5G06960 61.379 290 104 3 140 426 46 330 2.57e-121 356
MS.gene065104.t1 AT5G06960 61.379 290 104 3 140 426 26 310 3.14e-121 355
MS.gene065104.t1 AT1G08320 54.967 302 125 3 125 426 39 329 4.79e-115 341
MS.gene065104.t1 AT1G08320 54.967 302 125 3 125 426 39 329 4.79e-115 341
MS.gene065104.t1 AT1G08320 54.636 302 126 3 125 426 163 453 8.88e-114 342
MS.gene065104.t1 AT1G08320 54.636 302 126 3 125 426 163 453 8.88e-114 342
MS.gene065104.t1 AT1G08320 54.636 302 126 3 125 426 163 453 8.88e-114 342
MS.gene065104.t1 AT5G10030 54.093 281 125 2 140 420 80 356 2.79e-103 311
MS.gene065104.t1 AT5G10030 54.093 281 125 2 140 420 80 356 2.79e-103 311
MS.gene065104.t1 AT5G10030 54.093 281 125 2 140 420 80 356 2.79e-103 311
MS.gene065104.t1 AT5G10030 54.093 281 125 2 140 420 80 356 2.79e-103 311
MS.gene065104.t1 AT5G10030 54.093 281 125 2 140 420 80 356 2.79e-103 311
MS.gene065104.t1 AT5G06839 49.835 303 141 3 135 426 113 415 1.67e-102 311
MS.gene065104.t1 AT5G06839 40.723 415 219 6 31 426 52 458 2.07e-102 312
MS.gene065104.t1 AT5G06839 50.000 304 140 4 135 426 113 416 2.99e-101 308
MS.gene065104.t1 AT1G22070 51.903 289 135 3 140 427 98 383 6.43e-99 301
MS.gene065104.t1 AT1G77920 50.871 287 128 2 140 426 93 366 6.35e-98 298
MS.gene065104.t1 AT5G65210 51.736 288 133 3 140 426 14 296 3.73e-97 293
MS.gene065104.t1 AT5G65210 51.736 288 133 3 140 426 84 366 1.23e-96 294
MS.gene065104.t1 AT5G65210 51.736 288 133 3 140 426 84 366 1.23e-96 294
MS.gene065104.t1 AT5G65210 51.736 288 133 3 140 426 84 366 1.23e-96 294
MS.gene065104.t1 AT5G65210 51.736 288 133 3 140 426 84 366 1.23e-96 294
MS.gene065104.t1 AT5G65210 51.736 288 133 3 140 426 84 366 1.23e-96 294
MS.gene065104.t1 AT5G65210 51.736 288 133 3 140 426 84 366 1.23e-96 294
MS.gene065104.t1 AT3G14880 22.870 223 134 4 207 404 4 213 2.05e-11 64.3

Find 87 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGTATTTCACATACTTTC+TGG 0.139651 1.2:-82434909 MS.gene065104:CDS
TTCGAGCTCTTAATTCATTA+TGG 0.242198 1.2:-82434064 MS.gene065104:CDS
TTAATTCCTTAGTATTCTTT+AGG 0.253564 1.2:+82434032 None:intergenic
GTTGTTGGAAACAGTAATTC+AGG 0.308162 1.2:-82435271 MS.gene065104:intron
ATGTATTTCACATACTTTCT+GGG 0.338361 1.2:-82434908 MS.gene065104:CDS
AGGTGTGGTAGCATTTGATA+TGG 0.349093 1.2:-82435090 MS.gene065104:CDS
CCCATTCTTCCTTCTTGCTT+AGG 0.356050 1.2:-82437128 MS.gene065104:intron
AAACCACCTTGAGCCGTTAT+CGG 0.365933 1.2:-82434502 MS.gene065104:CDS
ATCAGCTATAAATTCTCAAA+TGG 0.381451 1.2:-82435018 MS.gene065104:CDS
TCATATTCAGGCTATGTGTT+TGG 0.384585 1.2:-82436745 MS.gene065104:intron
ATTGGTTCAGCTTCTTCTTC+AGG 0.387251 1.2:-82436558 MS.gene065104:CDS
TGGCCATTGCAAGAGCCATT+TGG 0.388199 1.2:+82434328 None:intergenic
CTTAGTCTTACATTGATCCT+TGG 0.402912 1.2:+82436306 None:intergenic
TCCTCCACATCCACTGGATC+TGG 0.426350 1.2:-82434372 MS.gene065104:CDS
TTCACATACTTTCTGGGCTG+TGG 0.436250 1.2:-82434902 MS.gene065104:CDS
CAAGGATCAATGTAAGACTA+AGG 0.442256 1.2:-82436305 MS.gene065104:CDS
AGTGTTTATCAGCCGTGTCT+TGG 0.442318 1.2:-82436369 MS.gene065104:CDS
AGTCTCTAGTGTTGCAAGCT+TGG 0.444936 1.2:+82434308 None:intergenic
ATCTGTTGCTACCGGAGTTA+CGG 0.448238 1.2:-82435311 MS.gene065104:CDS
ACTAGAGACTTTCATTCATC+AGG 0.451246 1.2:-82434295 MS.gene065104:intron
GATCATGGTCATTCAGTTGT+TGG 0.458173 1.2:-82435286 MS.gene065104:CDS
ACCTAAGCAAGAAGGAAGAA+TGG 0.460425 1.2:+82437127 None:intergenic
GTTGCAAGTAACTTGCAGTA+TGG 0.469501 1.2:-82436697 MS.gene065104:CDS
ACAGGCATATGTGCAACAAT+TGG 0.470054 1.2:-82435503 MS.gene065104:intron
TTCAGCTTCTTCTTCAGGCA+TGG 0.471184 1.2:-82436553 MS.gene065104:CDS
CCTAAGCAAGAAGGAAGAAT+GGG 0.471498 1.2:+82437128 None:intergenic
GAAAAGTAGGTTAAGGAAGA+AGG 0.471895 1.2:-82436111 MS.gene065104:intron
TGATATGGACTATGCCCGTT+GGG 0.479920 1.2:-82435075 MS.gene065104:CDS
GCTTCAACAAGTACGTCAAC+AGG 0.483846 1.2:-82435443 MS.gene065104:intron
TCAGCTATAAATTCTCAAAT+GGG 0.485434 1.2:-82435017 MS.gene065104:CDS
GAACTGCATCTTCTTGTTGA+AGG 0.485780 1.2:-82434987 MS.gene065104:CDS
CCGTTCTTCCGAACTGCTCA+AGG 0.493021 1.2:-82434838 MS.gene065104:intron
TGGAAATGTTGCTGAGTACA+TGG 0.493141 1.2:-82434352 MS.gene065104:CDS
CAAAATCACCTTGAGCAGTT+CGG 0.495280 1.2:+82434830 None:intergenic
TTGATGATCATCGACCCAAC+GGG 0.497188 1.2:+82435061 None:intergenic
ATCAACTGCTGATCCGATAA+CGG 0.503931 1.2:+82434489 None:intergenic
AATTGGAGAACAGTCGACTT+AGG 0.507628 1.2:-82435486 MS.gene065104:CDS
TTGATATGGACTATGCCCGT+TGG 0.508771 1.2:-82435076 MS.gene065104:CDS
TTTCTTAGGCTGATCTCTTG+AGG 0.513370 1.2:-82434175 MS.gene065104:intron
CCGCAAGGAAAAGTAGGTTA+AGG 0.519267 1.2:-82436118 MS.gene065104:CDS
AAGGAAGAATGGGAAGAGAA+TGG 0.520953 1.2:+82437138 None:intergenic
TTATCGGATCAGCAGTTGAT+GGG 0.521698 1.2:-82434486 MS.gene065104:CDS
GCGAGGCCGCAAGGAAAAGT+AGG 0.523131 1.2:-82436124 MS.gene065104:CDS
ATTTCCAGATCCAGTGGATG+TGG 0.524593 1.2:+82434368 None:intergenic
ACACTTTCCTCCACATCCAC+TGG 0.524662 1.2:-82434378 MS.gene065104:CDS
ACCGGAGTTACGGCAGATCA+TGG 0.531869 1.2:-82435301 MS.gene065104:CDS
CACATGAAACATCTTTCTGC+AGG 0.533251 1.2:+82434873 None:intergenic
TGCTGAGTACATGGGCCAAA+TGG 0.539603 1.2:-82434343 MS.gene065104:CDS
TAGGGTGCATCTGTTGCTAC+CGG 0.541526 1.2:-82435319 MS.gene065104:CDS
GTTATCGGATCAGCAGTTGA+TGG 0.541892 1.2:-82434487 MS.gene065104:CDS
ACCATGATCTGCCGTAACTC+CGG 0.547327 1.2:+82435300 None:intergenic
TCTTGTAGTTGTTGAATCCA+AGG 0.547828 1.2:-82436323 MS.gene065104:CDS
ACATGTCCTAAAGAATACTA+AGG 0.550185 1.2:-82434038 None:intergenic
GGGCCAAATGGCTCTTGCAA+TGG 0.552891 1.2:-82434331 MS.gene065104:CDS
CCTTGAGCAGTTCGGAAGAA+CGG 0.553316 1.2:+82434838 None:intergenic
TGCAGAATCGCGAGGCCGCA+AGG 0.558062 1.2:-82436133 MS.gene065104:CDS
CAAGGAGAGCACGAGCAGCT+TGG 0.571780 1.2:+82434111 None:intergenic
GCTGAGGATGCTTTATCTCA+AGG 0.575247 1.2:-82434432 MS.gene065104:CDS
TCAGCCGTGTCTTGGTGCAA+TGG 0.579021 1.2:-82436361 MS.gene065104:CDS
AAGGATCAATGTAAGACTAA+GGG 0.583850 1.2:-82436304 MS.gene065104:CDS
AGCACGAGCAGCTTGGTGCA+CGG 0.592019 1.2:+82434118 None:intergenic
GTTGAAGAGCATAGGTGCAA+AGG 0.596176 1.2:-82434934 MS.gene065104:CDS
CAGCATGGTGATGTTGAGGA+TGG 0.598809 1.2:+82436946 None:intergenic
GCTGATCCGATAACGGCTCA+AGG 0.599388 1.2:+82434496 None:intergenic
GGATGCTTTATCTCAAGGAA+TGG 0.606203 1.2:-82434427 MS.gene065104:CDS
TTGTGTATTGTATAGAACAT+TGG 0.607394 1.2:-82436576 MS.gene065104:intron
GGGTCAATCTGAAAAGTACA+AGG 0.608781 1.2:-82436284 MS.gene065104:intron
AACACCATTGCACCAAGACA+CGG 0.609448 1.2:+82436357 None:intergenic
AGCAACATTTCCAGATCCAG+TGG 0.612783 1.2:+82434362 None:intergenic
GTGTCTTGGTGCAATGGTGT+TGG 0.614428 1.2:-82436355 MS.gene065104:CDS
TGTAACTTACCTAAGCAAGA+AGG 0.614985 1.2:+82437119 None:intergenic
TCCAGATCCAGTGGATGTGG+AGG 0.615846 1.2:+82434371 None:intergenic
GAAAGATGTTTCATGTGGCT+CGG 0.616317 1.2:-82434867 MS.gene065104:CDS
GCATTCTTCTCAGCAAGCTG+AGG 0.619429 1.2:-82434448 MS.gene065104:CDS
GTTGATGATCATCGACCCAA+CGG 0.624491 1.2:+82435060 None:intergenic
TCAACAGCATGGTGATGTTG+AGG 0.635192 1.2:+82436942 None:intergenic
TTATACAAGTTGAAGAGCAT+AGG 0.641756 1.2:-82434942 MS.gene065104:CDS
AAATGAAATCATTTATGACA+AGG 0.642100 1.2:+82434093 None:intergenic
AGATGTTTCATGTGGCTCGG+TGG 0.642187 1.2:-82434864 MS.gene065104:CDS
TATCGGATCAGCAGTTGATG+GGG 0.649177 1.2:-82434485 MS.gene065104:CDS
TCGGCTGATGCAGAATCGCG+AGG 0.649355 1.2:-82436141 MS.gene065104:CDS
GTGCAATGGTGTTGGAAACG+AGG 0.657772 1.2:-82436347 MS.gene065104:CDS
CTGCAGAAAGATGTTTCATG+TGG 0.677608 1.2:-82434872 MS.gene065104:CDS
TTGAGCTTAAATCAACAGCA+TGG 0.678647 1.2:+82436931 None:intergenic
AGAATGGGAAGAGAATGGTG+AGG 0.686067 1.2:+82437143 None:intergenic
GGAAATGTTGCTGAGTACAT+GGG 0.694330 1.2:-82434351 MS.gene065104:CDS
GATCCGATAACGGCTCAAGG+TGG 0.733902 1.2:+82434499 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACATAATTTAAAATTGAAT+TGG + chr1.2:82434996-82435015 None:intergenic 10.0%
!!! CTAATTTATATTATATGTTT+TGG - chr1.2:82435679-82435698 MS.gene065104:intron 10.0%
!! ATTAACTTAACACTAAAATT+TGG - chr1.2:82436418-82436437 MS.gene065104:intron 15.0%
!! TATATATTTAATCTGTTGAA+GGG - chr1.2:82435478-82435497 MS.gene065104:CDS 15.0%
!! TATGAAAGTTTATTATAAAG+TGG - chr1.2:82436537-82436556 MS.gene065104:CDS 15.0%
!!! AATTATTTTTGTTACAAATG+CGG + chr1.2:82435637-82435656 None:intergenic 15.0%
!!! ATTTTAGTGTTAAGTTAATA+TGG + chr1.2:82436417-82436436 None:intergenic 15.0%
!!! CTTTTTTTTTAATCATATTC+AGG - chr1.2:82434454-82434473 MS.gene065104:CDS 15.0%
!!! GTAAAATAGAAATTGTATTT+TGG - chr1.2:82436508-82436527 MS.gene065104:CDS 15.0%
!!! TTCTAATTATTATTTTTCCA+TGG - chr1.2:82435853-82435872 MS.gene065104:intron 15.0%
!! AAATGAAATCATTTATGACA+AGG + chr1.2:82437121-82437140 None:intergenic 20.0%
!! GATTAAATATATACTAGAAC+AGG + chr1.2:82435471-82435490 None:intergenic 20.0%
!! GTATATATTTAATCTGTTGA+AGG - chr1.2:82435477-82435496 MS.gene065104:CDS 20.0%
!! TTATTACACTCAATTAATTG+TGG + chr1.2:82436991-82437010 None:intergenic 20.0%
!!! GATAATCTATTTTGACTTTT+AGG - chr1.2:82435393-82435412 MS.gene065104:intron 20.0%
!!! GTTTCTTATTTAAGTTTGTA+AGG + chr1.2:82435273-82435292 None:intergenic 20.0%
!!! TACTGATAAAACATTTTCAT+TGG - chr1.2:82435586-82435605 MS.gene065104:intron 20.0%
!!! TAGTTAGTTTGTTAGTATAT+AGG + chr1.2:82436573-82436592 None:intergenic 20.0%
! AAAAACATCAAAGCAGAAAT+TGG + chr1.2:82435181-82435200 None:intergenic 25.0%
! AAGAAAAAACAAATGCAAAG+AGG + chr1.2:82436669-82436688 None:intergenic 25.0%
! AATGAGAATATTGACAAAGA+AGG + chr1.2:82434431-82434450 None:intergenic 25.0%
! AGTAAACACATCTTATCAAA+TGG + chr1.2:82435814-82435833 None:intergenic 25.0%
! ATCAGCTATAAATTCTCAAA+TGG - chr1.2:82436193-82436212 MS.gene065104:intron 25.0%
! ATGGAAATCTTCTAAATTGT+TGG + chr1.2:82435795-82435814 None:intergenic 25.0%
! ATGTATTTCACATACTTTCT+GGG - chr1.2:82436303-82436322 MS.gene065104:CDS 25.0%
! CTGATAAACACTGAAAAATA+AGG + chr1.2:82434834-82434853 None:intergenic 25.0%
! TATATTTGATGTATGAAGAG+TGG - chr1.2:82434802-82434821 MS.gene065104:intron 25.0%
! TCAGCTATAAATTCTCAAAT+GGG - chr1.2:82436194-82436213 MS.gene065104:intron 25.0%
! TTAACCCAAAAAAAAGAACA+TGG + chr1.2:82435240-82435259 None:intergenic 25.0%
! TTATCAGTATTTGTGAGTTA+CGG + chr1.2:82435575-82435594 None:intergenic 25.0%
! TTGTGTATTGTATAGAACAT+TGG - chr1.2:82434635-82434654 MS.gene065104:intron 25.0%
!!! ATGAAGTATTTTAAACCTTC+AGG - chr1.2:82436101-82436120 MS.gene065104:intron 25.0%
!!! TATATGTTTTGGTTTTGAAC+AGG - chr1.2:82435690-82435709 MS.gene065104:intron 25.0%
!!! TTGTGAACATTGTTTTTCTT+AGG - chr1.2:82437022-82437041 MS.gene065104:intron 25.0%
AAAGATGGTTGAAATGTACT+TGG + chr1.2:82434748-82434767 None:intergenic 30.0%
AAGGATCAATGTAAGACTAA+GGG - chr1.2:82434907-82434926 MS.gene065104:CDS 30.0%
ACACAACATTGAATCAGATA+AGG + chr1.2:82434621-82434640 None:intergenic 30.0%
AGTGTGAAAAGATCAAAAGA+TGG + chr1.2:82434763-82434782 None:intergenic 30.0%
GATGTATTTCACATACTTTC+TGG - chr1.2:82436302-82436321 MS.gene065104:CDS 30.0%
GCACAAAATCACATTAAAAG+TGG + chr1.2:82434970-82434989 None:intergenic 30.0%
TGATTAAGCTCTCTATTAAG+AGG + chr1.2:82435210-82435229 None:intergenic 30.0%
TGCTGATACATTTATCTATG+TGG - chr1.2:82435026-82435045 MS.gene065104:CDS 30.0%
TTACTACTGCTGCTAAAAAA+TGG + chr1.2:82434166-82434185 None:intergenic 30.0%
TTCGAGCTCTTAATTCATTA+TGG - chr1.2:82437147-82437166 MS.gene065104:CDS 30.0%
TTCGTACTATATAGCATTAC+TGG - chr1.2:82435655-82435674 MS.gene065104:intron 30.0%
! TTATACAAGTTGAAGAGCAT+AGG - chr1.2:82436269-82436288 MS.gene065104:intron 30.0%
! TTTTAGCAGCAGTAGTAAAA+TGG - chr1.2:82434168-82434187 MS.gene065104:CDS 30.0%
!! ACAGTTCTAAATCAAAGTCA+AGG - chr1.2:82436465-82436484 MS.gene065104:intron 30.0%
!! CAGTTCTAAATCAAAGTCAA+GGG - chr1.2:82436466-82436485 MS.gene065104:intron 30.0%
!!! AGCTCCATGTTCTTTTTTTT+GGG - chr1.2:82435233-82435252 MS.gene065104:intron 30.0%
!!! AGTTTCTCTGTTTTGAAACA+GGG - chr1.2:82434205-82434224 MS.gene065104:intron 30.0%
!!! TCTATTTTGACTTTTAGGCT+TGG - chr1.2:82435398-82435417 MS.gene065104:intron 30.0%
ACAAATGCAAAGAGGAATGA+AGG + chr1.2:82436661-82436680 None:intergenic 35.0%
ACTAGAGACTTTCATTCATC+AGG - chr1.2:82436916-82436935 MS.gene065104:intron 35.0%
AGAGGGAAAAAAACAATCCA+TGG + chr1.2:82435873-82435892 None:intergenic 35.0%
CAAAAAAAAGAACATGGAGC+TGG + chr1.2:82435234-82435253 None:intergenic 35.0%
CAAGGATCAATGTAAGACTA+AGG - chr1.2:82434906-82434925 MS.gene065104:CDS 35.0%
GAAAAGTAGGTTAAGGAAGA+AGG - chr1.2:82435100-82435119 MS.gene065104:intron 35.0%
GAACATGCAAAGATTGATGT+AGG - chr1.2:82435340-82435359 MS.gene065104:intron 35.0%
GAAGAGCTATTATGTTGCAT+TGG - chr1.2:82435420-82435439 MS.gene065104:intron 35.0%
GTTAGTTACTTAGTTGCTAG+AGG + chr1.2:82436596-82436615 None:intergenic 35.0%
GTTGTTGGAAACAGTAATTC+AGG - chr1.2:82435940-82435959 MS.gene065104:intron 35.0%
TAAGCTCTCTATTAAGAGGT+AGG + chr1.2:82435206-82435225 None:intergenic 35.0%
TATGAAGGAAATGAAGCTCA+AGG + chr1.2:82435979-82435998 None:intergenic 35.0%
TCATATTCAGGCTATGTGTT+TGG - chr1.2:82434466-82434485 MS.gene065104:CDS 35.0%
TCTTGTAGTTGTTGAATCCA+AGG - chr1.2:82434888-82434907 MS.gene065104:CDS 35.0%
TGCTGCTAAAAAATGGAAGA+GGG + chr1.2:82434159-82434178 None:intergenic 35.0%
TGTAACTTACCTAAGCAAGA+AGG + chr1.2:82434095-82434114 None:intergenic 35.0%
TTGAGCTTAAATCAACAGCA+TGG + chr1.2:82434283-82434302 None:intergenic 35.0%
!! CTTAGTCTTACATTGATCCT+TGG + chr1.2:82434908-82434927 None:intergenic 35.0%
!! GTATTTTAAACCTTCAGGTG+TGG - chr1.2:82436106-82436125 MS.gene065104:intron 35.0%
!!! CAGCTCCATGTTCTTTTTTT+TGG - chr1.2:82435232-82435251 MS.gene065104:intron 35.0%
!!! GAGTTTCTCTGTTTTGAAAC+AGG - chr1.2:82434204-82434223 MS.gene065104:intron 35.0%
!!! GCATTTTTTAGACTCTTCGT+CGG - chr1.2:82435051-82435070 MS.gene065104:CDS 35.0%
!!! GGATTGTTTTTTTCCCTCTA+GGG - chr1.2:82435874-82435893 MS.gene065104:intron 35.0%
!!! GTTTCTCTGTTTTGAAACAG+GGG - chr1.2:82434206-82434225 MS.gene065104:intron 35.0%
!!! TGGATTGTTTTTTTCCCTCT+AGG - chr1.2:82435873-82435892 MS.gene065104:intron 35.0%
AAGGAAGAATGGGAAGAGAA+TGG + chr1.2:82434076-82434095 None:intergenic 40.0%
ACAGGCATATGTGCAACAAT+TGG - chr1.2:82435708-82435727 MS.gene065104:intron 40.0%
ACCTAAGCAAGAAGGAAGAA+TGG + chr1.2:82434087-82434106 None:intergenic 40.0%
AGGTGTGGTAGCATTTGATA+TGG - chr1.2:82436121-82436140 MS.gene065104:CDS 40.0%
ATCAACTGCTGATCCGATAA+CGG + chr1.2:82436725-82436744 None:intergenic 40.0%
CAAAATCACCTTGAGCAGTT+CGG + chr1.2:82436384-82436403 None:intergenic 40.0%
CACATGAAACATCTTTCTGC+AGG + chr1.2:82436341-82436360 None:intergenic 40.0%
CCTAAGCAAGAAGGAAGAAT+GGG + chr1.2:82434086-82434105 None:intergenic 40.0%
CCTTCATAGTGGTAGAAACA+TGG - chr1.2:82435991-82436010 MS.gene065104:intron 40.0%
CTGAAAAATTGAGACGCGTA+GGG - chr1.2:82435296-82435315 MS.gene065104:CDS 40.0%
CTGCAGAAAGATGTTTCATG+TGG - chr1.2:82436339-82436358 MS.gene065104:CDS 40.0%
CTGCTAAAAAATGGAAGAGG+GGG + chr1.2:82434157-82434176 None:intergenic 40.0%
CTGCTGCTAAAAAATGGAAG+AGG + chr1.2:82434160-82434179 None:intergenic 40.0%
GAAAGATGTTTCATGTGGCT+CGG - chr1.2:82436344-82436363 MS.gene065104:CDS 40.0%
GAACTGCATCTTCTTGTTGA+AGG - chr1.2:82436224-82436243 MS.gene065104:intron 40.0%
GAGCTTCATTTCCTTCATAG+TGG - chr1.2:82435980-82435999 MS.gene065104:intron 40.0%
GATCATGGTCATTCAGTTGT+TGG - chr1.2:82435925-82435944 MS.gene065104:intron 40.0%
GCTGCTAAAAAATGGAAGAG+GGG + chr1.2:82434158-82434177 None:intergenic 40.0%
GGAAATGTTGCTGAGTACAT+GGG - chr1.2:82436860-82436879 MS.gene065104:intron 40.0%
GGATGCTTTATCTCAAGGAA+TGG - chr1.2:82436784-82436803 MS.gene065104:intron 40.0%
TCTGAAAAATTGAGACGCGT+AGG - chr1.2:82435295-82435314 MS.gene065104:CDS 40.0%
TGCTAAAAAATGGAAGAGGG+GGG + chr1.2:82434156-82434175 None:intergenic 40.0%
TGGAAATGTTGCTGAGTACA+TGG - chr1.2:82436859-82436878 MS.gene065104:intron 40.0%
TTATCGGATCAGCAGTTGAT+GGG - chr1.2:82436725-82436744 MS.gene065104:CDS 40.0%
TTTCTTAGGCTGATCTCTTG+AGG - chr1.2:82437036-82437055 MS.gene065104:intron 40.0%
! AATTGGAGAACAGTCGACTT+AGG - chr1.2:82435725-82435744 MS.gene065104:intron 40.0%
! ATTGGTTCAGCTTCTTCTTC+AGG - chr1.2:82434653-82434672 MS.gene065104:intron 40.0%
! CCATGTTTCTACCACTATGA+AGG + chr1.2:82435994-82436013 None:intergenic 40.0%
! GGGTCAATCTGAAAAGTACA+AGG - chr1.2:82434927-82434946 MS.gene065104:CDS 40.0%
! GTTGCAAGTAACTTGCAGTA+TGG - chr1.2:82434514-82434533 MS.gene065104:intron 40.0%
!! ACGCGTCTCAATTTTTCAGA+AGG + chr1.2:82435295-82435314 None:intergenic 40.0%
!! CCTTAACCTACTTTTCCTTG+CGG + chr1.2:82435096-82435115 None:intergenic 40.0%
AAACCACCTTGAGCCGTTAT+CGG - chr1.2:82436709-82436728 MS.gene065104:CDS 45.0%
AACACCATTGCACCAAGACA+CGG + chr1.2:82434857-82434876 None:intergenic 45.0%
AGAATGGGAAGAGAATGGTG+AGG + chr1.2:82434071-82434090 None:intergenic 45.0%
AGCAACATTTCCAGATCCAG+TGG + chr1.2:82436852-82436871 None:intergenic 45.0%
AGTCTCTAGTGTTGCAAGCT+TGG + chr1.2:82436906-82436925 None:intergenic 45.0%
AGTGTTTATCAGCCGTGTCT+TGG - chr1.2:82434842-82434861 MS.gene065104:CDS 45.0%
ATCTGTTGCTACCGGAGTTA+CGG - chr1.2:82435900-82435919 MS.gene065104:intron 45.0%
ATTTCCAGATCCAGTGGATG+TGG + chr1.2:82436846-82436865 None:intergenic 45.0%
CCCATTCTTCCTTCTTGCTT+AGG - chr1.2:82434083-82434102 MS.gene065104:CDS 45.0%
CCGCAAGGAAAAGTAGGTTA+AGG - chr1.2:82435093-82435112 MS.gene065104:intron 45.0%
GCTGAGGATGCTTTATCTCA+AGG - chr1.2:82436779-82436798 MS.gene065104:intron 45.0%
GCTTCAACAAGTACGTCAAC+AGG - chr1.2:82435768-82435787 MS.gene065104:intron 45.0%
GTTATCGGATCAGCAGTTGA+TGG - chr1.2:82436724-82436743 MS.gene065104:CDS 45.0%
TCAAATGCTACCACACCTGA+AGG + chr1.2:82436119-82436138 None:intergenic 45.0%
TCATTGGCGCTTTCTCTAGA+AGG - chr1.2:82435602-82435621 MS.gene065104:intron 45.0%
TGAGGATGGAAAAAACGCGT+TGG + chr1.2:82434254-82434273 None:intergenic 45.0%
TTCACATACTTTCTGGGCTG+TGG - chr1.2:82436309-82436328 MS.gene065104:CDS 45.0%
TTCAGCTTCTTCTTCAGGCA+TGG - chr1.2:82434658-82434677 MS.gene065104:intron 45.0%
! CGAACTGCTCAAGGTGATTT+TGG - chr1.2:82436382-82436401 MS.gene065104:intron 45.0%
! GTTGAAGAGCATAGGTGCAA+AGG - chr1.2:82436277-82436296 MS.gene065104:intron 45.0%
! TATCGGATCAGCAGTTGATG+GGG - chr1.2:82436726-82436745 MS.gene065104:CDS 45.0%
! TCAACAGCATGGTGATGTTG+AGG + chr1.2:82434272-82434291 None:intergenic 45.0%
! TGATATGGACTATGCCCGTT+GGG - chr1.2:82436136-82436155 MS.gene065104:CDS 45.0%
! TTGATATGGACTATGCCCGT+TGG - chr1.2:82436135-82436154 MS.gene065104:CDS 45.0%
! TTGATGATCATCGACCCAAC+GGG + chr1.2:82436153-82436172 None:intergenic 45.0%
!! GTTGATGATCATCGACCCAA+CGG + chr1.2:82436154-82436173 None:intergenic 45.0%
ACACTTTCCTCCACATCCAC+TGG - chr1.2:82436833-82436852 MS.gene065104:intron 50.0%
ACCATGATCTGCCGTAACTC+CGG + chr1.2:82435914-82435933 None:intergenic 50.0%
AGCAACAGATGCACCCTAGA+GGG + chr1.2:82435890-82435909 None:intergenic 50.0%
ATTGAGACGCGTAGGGTAAG+AGG - chr1.2:82435303-82435322 MS.gene065104:CDS 50.0%
CCTTGAGCAGTTCGGAAGAA+CGG + chr1.2:82436376-82436395 None:intergenic 50.0%
GCATTCTTCTCAGCAAGCTG+AGG - chr1.2:82436763-82436782 MS.gene065104:intron 50.0%
TAGCAACAGATGCACCCTAG+AGG + chr1.2:82435891-82435910 None:intergenic 50.0%
TAGGGTGCATCTGTTGCTAC+CGG - chr1.2:82435892-82435911 MS.gene065104:intron 50.0%
TGCTGAGTACATGGGCCAAA+TGG - chr1.2:82436868-82436887 MS.gene065104:intron 50.0%
TGGCCATTGCAAGAGCCATT+TGG + chr1.2:82436886-82436905 None:intergenic 50.0%
TTGAGACGCGTAGGGTAAGA+GGG - chr1.2:82435304-82435323 MS.gene065104:CDS 50.0%
! AGATGTTTCATGTGGCTCGG+TGG - chr1.2:82436347-82436366 MS.gene065104:CDS 50.0%
! CAGCATGGTGATGTTGAGGA+TGG + chr1.2:82434268-82434287 None:intergenic 50.0%
! GTGCAATGGTGTTGGAAACG+AGG - chr1.2:82434864-82434883 MS.gene065104:CDS 50.0%
! GTGTCTTGGTGCAATGGTGT+TGG - chr1.2:82434856-82434875 MS.gene065104:CDS 50.0%
ACCGGAGTTACGGCAGATCA+TGG - chr1.2:82435910-82435929 MS.gene065104:intron 55.0%
CCGTTCTTCCGAACTGCTCA+AGG - chr1.2:82436373-82436392 MS.gene065104:intron 55.0%
GGGCCAAATGGCTCTTGCAA+TGG - chr1.2:82436880-82436899 MS.gene065104:intron 55.0%
TCCAGATCCAGTGGATGTGG+AGG + chr1.2:82436843-82436862 None:intergenic 55.0%
TCCTCCACATCCACTGGATC+TGG - chr1.2:82436839-82436858 MS.gene065104:intron 55.0%
! GATCCGATAACGGCTCAAGG+TGG + chr1.2:82436715-82436734 None:intergenic 55.0%
! GCTGATCCGATAACGGCTCA+AGG + chr1.2:82436718-82436737 None:intergenic 55.0%
! TCAGCCGTGTCTTGGTGCAA+TGG - chr1.2:82434850-82434869 MS.gene065104:CDS 55.0%
GCGAGGCCGCAAGGAAAAGT+AGG - chr1.2:82435087-82435106 MS.gene065104:CDS 60.0%
TCGGCTGATGCAGAATCGCG+AGG - chr1.2:82435070-82435089 MS.gene065104:CDS 60.0%
! CAAGGAGAGCACGAGCAGCT+TGG + chr1.2:82437103-82437122 None:intergenic 60.0%
!! AGCACGAGCAGCTTGGTGCA+CGG + chr1.2:82437096-82437115 None:intergenic 60.0%
TGCAGAATCGCGAGGCCGCA+AGG - chr1.2:82435078-82435097 MS.gene065104:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 82434040 82437193 82434040 ID=MS.gene065104
chr1.2 mRNA 82434040 82437193 82434040 ID=MS.gene065104.t1;Parent=MS.gene065104
chr1.2 exon 82437129 82437193 82437129 ID=MS.gene065104.t1.exon1;Parent=MS.gene065104.t1
chr1.2 CDS 82437129 82437193 82437129 ID=cds.MS.gene065104.t1;Parent=MS.gene065104.t1
chr1.2 exon 82436931 82437007 82436931 ID=MS.gene065104.t1.exon2;Parent=MS.gene065104.t1
chr1.2 CDS 82436931 82437007 82436931 ID=cds.MS.gene065104.t1;Parent=MS.gene065104.t1
chr1.2 exon 82436684 82436757 82436684 ID=MS.gene065104.t1.exon3;Parent=MS.gene065104.t1
chr1.2 CDS 82436684 82436757 82436684 ID=cds.MS.gene065104.t1;Parent=MS.gene065104.t1
chr1.2 exon 82436485 82436583 82436485 ID=MS.gene065104.t1.exon4;Parent=MS.gene065104.t1
chr1.2 CDS 82436485 82436583 82436485 ID=cds.MS.gene065104.t1;Parent=MS.gene065104.t1
chr1.2 exon 82436285 82436389 82436285 ID=MS.gene065104.t1.exon5;Parent=MS.gene065104.t1
chr1.2 CDS 82436285 82436389 82436285 ID=cds.MS.gene065104.t1;Parent=MS.gene065104.t1
chr1.2 exon 82436112 82436171 82436112 ID=MS.gene065104.t1.exon6;Parent=MS.gene065104.t1
chr1.2 CDS 82436112 82436171 82436112 ID=cds.MS.gene065104.t1;Parent=MS.gene065104.t1
chr1.2 exon 82435444 82435521 82435444 ID=MS.gene065104.t1.exon7;Parent=MS.gene065104.t1
chr1.2 CDS 82435444 82435521 82435444 ID=cds.MS.gene065104.t1;Parent=MS.gene065104.t1
chr1.2 exon 82435272 82435338 82435272 ID=MS.gene065104.t1.exon8;Parent=MS.gene065104.t1
chr1.2 CDS 82435272 82435338 82435272 ID=cds.MS.gene065104.t1;Parent=MS.gene065104.t1
chr1.2 exon 82434839 82435110 82434839 ID=MS.gene065104.t1.exon9;Parent=MS.gene065104.t1
chr1.2 CDS 82434839 82435110 82434839 ID=cds.MS.gene065104.t1;Parent=MS.gene065104.t1
chr1.2 exon 82434296 82434532 82434296 ID=MS.gene065104.t1.exon10;Parent=MS.gene065104.t1
chr1.2 CDS 82434296 82434532 82434296 ID=cds.MS.gene065104.t1;Parent=MS.gene065104.t1
chr1.2 exon 82434040 82434189 82434040 ID=MS.gene065104.t1.exon11;Parent=MS.gene065104.t1
chr1.2 CDS 82434040 82434189 82434040 ID=cds.MS.gene065104.t1;Parent=MS.gene065104.t1
Gene Sequence

>MS.gene065104

ATGCAAAACTTCAACACAACTGAATCAACCTCACCATTCTCTTCCCATTCTTCCTTCTTGCTTAGGTAAGTTACATTACACAATGCTCAAAATCAAAGTTGTTTCACTATTTACCCCCCTCTTCCATTTTTTAGCAGCAGTAGTAAAATGGTTAATGTAAAACAGAGTTTCTCTGTTTTGAAACAGGGGAGATGATGAACTCAACATAAATCCAACGCGTTTTTTCCATCCTCAACATCACCATGCTGTTGATTTAAGCTCAAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAACAGTTCCTTCTTTGTCAATATTCTCATTTCACTTTTTTTTTAATCATATTCAGGCTATGTGTTTGGTGCAAAGTCTAACAATGTCACTGTTGTTGCAAGTAACTTGCAGTATGGAACATTCAATACTGTAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAGTTTTGTGTAAAACTAACAGCCTTATCTGATTCAATGTTGTGTATTGTATAGAACATTGGTTCAGCTTCTTCTTCAGGCATGGCAGATAACAGTCAAAAGACAGAAGATACTTCAACAGAAGATTTTGACACTGATGATAAAAACAACCAAGTACATTTCAACCATCTTTTGATCTTTTCACACTCTTTCAATATCTATGTGTATATATTTGATGTATGAAGAGTGGTAATGTCCTTATTTTTCAGTGTTTATCAGCCGTGTCTTGGTGCAATGGTGTTGGAAACGAGGCTCTTGTAGTTGTTGAATCCAAGGATCAATGTAAGACTAAGGGTCAATCTGAAAAGTACAAGGTTGTTGATTTTTTTCTACCACTTTTAATGTGATTTTGTGCTATCCAATTCAATTTTAAATTATGTTACATTTCTGCTGCTGATACATTTATCTATGTGGTTGCATTTTTTAGACTCTTCGTCGGCTGATGCAGAATCGCGAGGCCGCAAGGAAAAGTAGGTTAAGGAAGAAGGTAATTGCTTTGATCTTAACTTATGATGTGTCTTGTTCGTATGTGTTATATTTAAACCAATTTCTGCTTTGATGTTTTTAGCCTACCTCTTAATAGAGAGCTTAATCATCCAGCTCCATGTTCTTTTTTTTGGGTTAACTTAATAAGTCCTTACAAACTTAAATAAGAAACCTTCTGAAAAATTGAGACGCGTAGGGTAAGAGGGTTTTATAACTAATGAACATGCAAAGATTGATGTAGGATTCTTATAATACTTTCTTTTTTCATAAATGATAATCTATTTTGACTTTTAGGCTTGGAAGAGCTATTATGTTGCATTGGATTTGACTACAAGTTATGTTTTCTTCCTGTTCTAGTATATATTTAATCTGTTGAAGGGACGCATAATGTTGATGTTATAGATGAATACATAACTCAATTTCTGAACTGTTTTATCTTTTATGCACGACGCCGTAACTCACAAATACTGATAAAACATTTTCATTGGCGCTTTCTCTAGAAGGAAGACATGTCCGCATTTGTAACAAAAATAATTCGTACTATATAGCATTACTGGACTAATTTATATTATATGTTTTGGTTTTGAACAGGCATATGTGCAACAATTGGAGAACAGTCGACTTAGGCTTGCTCAAATAGAACAAGAGCTTCAACAAGTACGTCAACAGGTCCAACAATTTAGAAGATTTCCATTTGATAAGATGTGTTTACTCAATTTAATTTTGTTGTCATTCTAATTATTATTTTTCCATGGATTGTTTTTTTCCCTCTAGGGTGCATCTGTTGCTACCGGAGTTACGGCAGATCATGGTCATTCAGTTGTTGGAAACAGTAATTCAGGTGAAGTAAAGAAACCTTGAGCTTCATTTCCTTCATAGTGGTAGAAACATGGTGTTTGTGTCTAATATATATTTTCAAATAGAAATTATATCACTTAGATATTTTAACTGCATTTCTTTAGAATGTGAGTATGTGACTGATGAAGTATTTTAAACCTTCAGGTGTGGTAGCATTTGATATGGACTATGCCCGTTGGGTCGATGATCATCAACGATTAATCAATGACATAAGATCAGCTATAAATTCTCAAATGGGCGATAATGAACTGCATCTTCTTGTTGAAGGTGTCATGTCACATTATGATGAATTATACAAGTTGAAGAGCATAGGTGCAAAGGCTGATGTATTTCACATACTTTCTGGGCTGTGGAAGACACCTGCAGAAAGATGTTTCATGTGGCTCGGTGGATTCCGTTCTTCCGAACTGCTCAAGGTGATTTTGGTTTAATTTACCATATTAACTTAACACTAAAATTTGGTGCTCTTGTATAGAAAACATTATTACAGTTCTAAATCAAAGTCAAGGGTAAGAAAAAAGTGTCGAAAGTAAAATAGAAATTGTATTTTGGAACGAATATGAAAGTTTATTATAAAGTGGTTATATCAAGCCTATATACTAACAAACTAACTACCTCTAGCAACTAAGTAACTAACTAACTTAAATGTACTAGTAACTATTTACACTTTATAACTCTTCCTTCATTCCTCTTTGCATTTGTTTTTTCTTATTGAGATTCAGATCGTTAGAAACCACCTTGAGCCGTTATCGGATCAGCAGTTGATGGGGATCTACAATCTGCAGCATTCTTCTCAGCAAGCTGAGGATGCTTTATCTCAAGGAATGGAAGCATTGCAACAATCTCTTTCAGAGACACTTTCCTCCACATCCACTGGATCTGGAAATGTTGCTGAGTACATGGGCCAAATGGCTCTTGCAATGGCCAAGCTTGCAACACTAGAGACTTTCATTCATCAGGTAATTAAATTTAAGACAATTTGATCTTGATCACTCAACATTATCTTATTCCACAATTAATTGAGTGTAATAACATTGTAAATCTTGTGAACATTGTTTTTCTTAGGCTGATCTCTTGAGGCAACAAACACTGCAACAGTTGCGTCGAATTTTGACCGTGCACCAAGCTGCTCGTGCTCTCCTTGTCATAAATGATTTCATTTCGCGAATTCGAGCTCTTAATTCATTATGGTTAACATGTCCTAAAGAATACTAA
Protein sequence

>MS.gene065104.t1

MQNFNTTESTSPFSSHSSFLLRGDDELNINPTRFFHPQHHHAVDLSSSYVFGAKSNNVTVVASNLQYGTFNTNIGSASSSGMADNSQKTEDTSTEDFDTDDKNNQCLSAVSWCNGVGNEALVVVESKDQCKTKGQSEKYKTLRRLMQNREAARKSRLRKKAYVQQLENSRLRLAQIEQELQQVRQQGASVATGVTADHGHSVVGNSNSGVVAFDMDYARWVDDHQRLINDIRSAINSQMGDNELHLLVEGVMSHYDELYKLKSIGAKADVFHILSGLWKTPAERCFMWLGGFRSSELLKIVRNHLEPLSDQQLMGIYNLQHSSQQAEDALSQGMEALQQSLSETLSSTSTGSGNVAEYMGQMALAMAKLATLETFIHQADLLRQQTLQQLRRILTVHQAARALLVINDFISRIRALNSLWLTCPKEY