AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene065293

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene065293.t1 MTR_1g061600 98.960 481 1 1 1 477 1 481 0.0 992
MS.gene065293.t1 MTR_8g093330 45.570 237 116 4 248 477 56 286 4.41e-64 210
MS.gene065293.t1 MTR_2g016140 35.644 101 59 3 129 224 23 122 1.47e-15 77.8
MS.gene065293.t1 MTR_2g016140 35.644 101 59 3 129 224 23 122 1.52e-15 78.2
MS.gene065293.t1 MTR_4g079960 36.275 102 58 3 129 224 31 131 1.83e-15 77.4
MS.gene065293.t1 MTR_1g037650 41.346 104 51 4 117 217 27 123 2.39e-15 74.7
MS.gene065293.t1 MTR_6g486270 37.255 102 61 2 127 226 128 228 2.55e-15 77.8
MS.gene065293.t1 MTR_4g079960 36.275 102 58 3 129 224 31 131 3.04e-15 77.0
MS.gene065293.t1 MTR_4g079960 36.275 102 58 3 129 224 31 131 3.53e-15 76.6
MS.gene065293.t1 MTR_3g014280 41.346 104 51 4 117 217 27 123 2.34e-14 74.3
MS.gene065293.t1 MTR_5g017500 34.000 100 60 2 129 222 22 121 2.00e-13 70.1
MS.gene065293.t1 MTR_4g117990 38.000 100 58 2 129 224 44 143 5.42e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene065293.t1 AT3G10030 55.364 522 176 7 1 477 1 510 0.0 545
MS.gene065293.t1 AT3G10030 55.278 521 176 7 1 476 1 509 0.0 543
MS.gene065293.t1 AT3G18680 51.965 229 105 2 251 477 78 303 3.61e-77 245
MS.gene065293.t1 AT3G18680 51.515 231 107 2 251 479 78 305 6.53e-76 243
MS.gene065293.t1 AT3G54390 36.441 118 65 3 123 238 32 141 2.88e-17 82.8
MS.gene065293.t1 AT3G54390 36.441 118 65 3 123 238 48 157 2.88e-17 82.8
MS.gene065293.t1 AT3G58630 30.872 149 78 3 129 252 26 174 2.70e-16 80.1
MS.gene065293.t1 AT3G58630 30.872 149 78 3 129 252 26 174 2.73e-16 80.1
MS.gene065293.t1 AT3G14180 37.607 117 66 4 108 220 63 176 5.53e-16 80.5
MS.gene065293.t1 AT3G24490 31.667 120 73 3 101 217 64 177 1.23e-12 69.3
MS.gene065293.t1 AT2G44730 38.043 92 53 2 129 216 64 155 2.06e-12 68.9

Find 133 sgRNAs with CRISPR-Local

Find 324 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGGAAGAGTTGTTATATT+TGG 0.225653 1.2:-46886925 MS.gene065293:CDS
TTGACAATGCTTTGGACTTC+AGG 0.272821 1.2:+46888983 None:intergenic
ATTAGTGGATCGGCACTTAC+TGG 0.274531 1.2:-46888931 MS.gene065293:CDS
CGACATATCCGCTGCTCTTC+GGG 0.296484 1.2:-46886863 MS.gene065293:CDS
ATATTTGGTGGCATTGGTTT+TGG 0.302206 1.2:-46886910 MS.gene065293:CDS
CTTTCGAGCACATATCCTTC+AGG 0.327576 1.2:-46886626 MS.gene065293:CDS
GAACAACTCTCCGCCATCTA+AGG 0.331588 1.2:+46888959 None:intergenic
GGTGGTGAGGTGCGAAGGTT+TGG 0.337687 1.2:+46890924 None:intergenic
CCGACATATCCGCTGCTCTT+CGG 0.347664 1.2:-46886864 MS.gene065293:CDS
TGCGAGGAAAATGCCATTCC+TGG 0.369901 1.2:-46886552 MS.gene065293:intron
TATTGTTGGGAATTCGCTTC+CGG 0.371702 1.2:-46890348 MS.gene065293:CDS
CGAAGGTTTGGTGGAGGTGG+TGG 0.380551 1.2:+46890936 None:intergenic
TCAATCAACTTTAGAGAAGA+TGG 0.381962 1.2:-46887034 MS.gene065293:CDS
AACCTTAGGGTCAATATTGC+AGG 0.385341 1.2:+46888900 None:intergenic
GTCTAGAGGTGTCACCTCTA+TGG 0.386263 1.2:-46886595 MS.gene065293:CDS
TCTAAGGTTTGACAATGCTT+TGG 0.391295 1.2:+46888975 None:intergenic
TTTCTGCTAGTCATTGGCCT+TGG 0.394011 1.2:-46890388 MS.gene065293:CDS
CTTAGATTGCCTAGGTGAAA+TGG 0.396098 1.2:+46890286 None:intergenic
CCACCGTTACCGCTTGAAAC+TGG 0.397009 1.2:+46890677 None:intergenic
GCGAGTGGTGGTTGTGGTGG+TGG 0.403050 1.2:+46890906 None:intergenic
GTTGCATTTCTGCTAGTCAT+TGG 0.405063 1.2:-46890394 MS.gene065293:CDS
AGGTTTGGTGGAGGTGGTGG+TGG 0.408889 1.2:+46890939 None:intergenic
GTTTACTTGACCTCCACTGC+TGG 0.412531 1.2:+46889008 None:intergenic
AAGCATTGTCAAACCTTAGA+TGG 0.420124 1.2:-46888972 MS.gene065293:CDS
CTTCAGGTAGCAATTGTTGT+TGG 0.428109 1.2:-46888593 MS.gene065293:intron
AAGCAGATGGAACATATTGT+TGG 0.431908 1.2:-46890362 MS.gene065293:CDS
GGTGAGGTGCGAAGGTTTGG+TGG 0.432109 1.2:+46890927 None:intergenic
GTGCGAAGGTTTGGTGGAGG+TGG 0.433564 1.2:+46890933 None:intergenic
GTTGCAATAGCTTCCCGTCT+TGG 0.434010 1.2:-46888708 MS.gene065293:CDS
GGAATCTAAGAGGAAGAGAT+TGG 0.434366 1.2:-46890541 MS.gene065293:CDS
GGAAGAGTTGTTATATTTGG+TGG 0.436188 1.2:-46886922 MS.gene065293:CDS
CGTTTGCTGAACCGTACAAT+AGG 0.437374 1.2:-46886972 MS.gene065293:CDS
TGCGATGCAACGACGTCGTA+TGG 0.438138 1.2:-46890722 MS.gene065293:CDS
GTTGTTATATTTGGTGGCAT+TGG 0.439242 1.2:-46886916 MS.gene065293:CDS
CTCAAAGGTACCAACGTAGA+TGG 0.443114 1.2:-46886684 MS.gene065293:CDS
AGCAGATGGAACATATTGTT+GGG 0.444247 1.2:-46890361 MS.gene065293:CDS
GACGGAGGTGGTGATGTGTT+TGG 0.447470 1.2:+46890853 None:intergenic
CGCTGCTCTTCGGGCTTCAG+AGG 0.450953 1.2:-46886854 MS.gene065293:CDS
CTGCTCTGCAGTTAATGCTC+AGG 0.451851 1.2:-46886712 MS.gene065293:intron
AGGTTGATAATTTGAAGAAA+AGG 0.452877 1.2:-46890448 MS.gene065293:CDS
GATGTACTGCATACCAAGTT+GGG 0.454334 1.2:-46888517 MS.gene065293:intron
ATAGAAAAGATCGAGAAGAA+TGG 0.456281 1.2:-46890628 MS.gene065293:CDS
TCTATACTCTGCTCCTACTC+CGG 0.456827 1.2:+46890646 None:intergenic
GTCGTCGTCGGCGACGGCGG+CGG 0.456922 1.2:+46890829 None:intergenic
TTTATCATCATCAGCAAACT+TGG 0.459547 1.2:+46890325 None:intergenic
CATCTACGTTGGTACCTTTG+AGG 0.460201 1.2:+46886685 None:intergenic
GAGAGGCATAGAATGAATAA+TGG 0.466819 1.2:-46890416 MS.gene065293:CDS
GTGGTGGTGGTGAGGTGCGA+AGG 0.467732 1.2:+46890919 None:intergenic
TCCTTTCTCAAGATGCCTGA+TGG 0.470108 1.2:+46886942 None:intergenic
GTCGGCGACGGCGGCGGAGA+CGG 0.470366 1.2:+46890835 None:intergenic
ACAATAGGCAACGGGCCATC+AGG 0.470864 1.2:-46886957 MS.gene065293:CDS
GGTGGTGCGAGTGGTGGTTG+TGG 0.476725 1.2:+46890900 None:intergenic
TTGGCCTTGGTTTAAGCAGA+TGG 0.477301 1.2:-46890375 MS.gene065293:CDS
GTCTCCGTCGTCGTCGGCGA+CGG 0.482206 1.2:+46890823 None:intergenic
GTGATTAACCTTACCCAACT+TGG 0.488217 1.2:+46888504 None:intergenic
CAGGTAGCAATTGTTGTTGG+AGG 0.488440 1.2:-46888590 MS.gene065293:CDS
GAATCTAAGAGGAAGAGATT+GGG 0.489819 1.2:-46890540 MS.gene065293:CDS
ATTTCTTCTGTGGAGATGCA+TGG 0.497325 1.2:-46888562 MS.gene065293:CDS
GGTGCGAGTGGTGGTTGTGG+TGG 0.497490 1.2:+46890903 None:intergenic
TTGGGAAGAAGTAGCTTCAA+TGG 0.503405 1.2:-46890522 MS.gene065293:CDS
TTTCGAGCACATATCCTTCA+GGG 0.508101 1.2:-46886625 MS.gene065293:CDS
GACGGCGGCGGAGACGGAGG+TGG 0.510775 1.2:+46890841 None:intergenic
TAAAGTTGATTGAAGCAGTA+AGG 0.510796 1.2:+46887044 None:intergenic
TCTTAAATTTGTCAGCATGA+TGG 0.513943 1.2:-46887082 MS.gene065293:intron
ATAGTATTGCTTACCAGGAA+TGG 0.515872 1.2:+46886539 None:intergenic
GATGCATGGGTAACTGCAAC+TGG 0.517940 1.2:-46888548 MS.gene065293:CDS
GCCATCAGGCATCTTGAGAA+AGG 0.521422 1.2:-46886943 MS.gene065293:CDS
CTGTACCTCCACACCAAGAC+GGG 0.522588 1.2:+46888695 None:intergenic
ATGGCCCGTTGCCTATTGTA+CGG 0.527865 1.2:+46886961 None:intergenic
AGCTTCCCGTCTTGGTGTGG+AGG 0.534343 1.2:-46888700 MS.gene065293:intron
TCCGTCGTCGTCGGCGACGG+CGG 0.535708 1.2:+46890826 None:intergenic
AGATGTACTGCATACCAAGT+TGG 0.537226 1.2:-46888518 MS.gene065293:CDS
TGCCTAGGTGAAATGGAAGC+AGG 0.537551 1.2:+46890293 None:intergenic
TCATCATCAGCAAACTTGGC+CGG 0.538573 1.2:+46890329 None:intergenic
TACCTGCAATATTGACCCTA+AGG 0.540236 1.2:-46888902 MS.gene065293:intron
TTTCTTCTGTGGAGATGCAT+GGG 0.540958 1.2:-46888561 MS.gene065293:CDS
GGAGGTCGTAATTTCTTCTG+TGG 0.542254 1.2:-46888572 MS.gene065293:CDS
CTACCAGCGTCATCGTCGAA+TGG 0.542605 1.2:+46890779 None:intergenic
CAATCAACTTTAGAGAAGAT+GGG 0.544338 1.2:-46887033 MS.gene065293:CDS
AGGGTCAATATTGCAGGTAT+CGG 0.548147 1.2:+46888906 None:intergenic
AGGTGGTGATGTGTTTGGAT+TGG 0.554894 1.2:+46890858 None:intergenic
TTTCACCTAGGCAATCTAAG+AGG 0.557596 1.2:-46890283 MS.gene065293:intron
GTTTCAAGCGGTAACGGTGG+AGG 0.559105 1.2:-46890674 MS.gene065293:CDS
CTGAATCGAGGGAATCTAAG+AGG 0.560567 1.2:-46890551 MS.gene065293:CDS
TGAACCGTACAATAGGCAAC+GGG 0.562366 1.2:-46886965 MS.gene065293:CDS
GGCGACGGCGGCGGAGACGG+AGG 0.562987 1.2:+46890838 None:intergenic
AAACCAGTTTCAAGCGGTAA+CGG 0.565973 1.2:-46890680 MS.gene065293:CDS
AGAAAAGGTATAAGCTAGAG+AGG 0.566023 1.2:-46890433 MS.gene065293:CDS
AATGCTCAGGCTGTCCTCAA+AGG 0.568956 1.2:-46886699 MS.gene065293:CDS
GCTGCTCTTCGGGCTTCAGA+GGG 0.571588 1.2:-46886853 MS.gene065293:intron
CGTATGGATTCAACAACAAA+CGG 0.572327 1.2:-46890706 MS.gene065293:CDS
ACAAACTTCAGTTTCAATGC+AGG 0.580585 1.2:-46886995 MS.gene065293:CDS
GGTGGAGGAAGCGCCGGAGT+AGG 0.580586 1.2:-46890659 MS.gene065293:CDS
GGTGTCGTCTCCGTCGTCGT+CGG 0.581790 1.2:+46890817 None:intergenic
TGGTGGTTGTGGTGGTGGTG+AGG 0.582436 1.2:+46890911 None:intergenic
AGAAGTGGTGGTGCGAGTGG+TGG 0.582491 1.2:+46890894 None:intergenic
AACTTCATTTGAAACTAACA+TGG 0.588078 1.2:+46888728 None:intergenic
TTAAACCTCTTAGATTGCCT+AGG 0.591137 1.2:+46890278 None:intergenic
GCCGCCGTCGCCGACGACGA+CGG 0.592641 1.2:-46890827 MS.gene065293:CDS
GTGGCTACGTCCAGCAGTGG+AGG 0.596879 1.2:-46889018 MS.gene065293:CDS
TGGAGAAGTGGTGGTGCGAG+TGG 0.602455 1.2:+46890891 None:intergenic
CTCTGAAGCCCGAAGAGCAG+CGG 0.603437 1.2:+46886855 None:intergenic
AATCCATTCGACGATGACGC+TGG 0.603457 1.2:-46890782 MS.gene065293:CDS
GGTAACGGTGGAGGAAGCGC+CGG 0.603519 1.2:-46890665 MS.gene065293:CDS
CCGAAGAGCAGCGGATATGT+CGG 0.604433 1.2:+46886864 None:intergenic
GAGGTGCGAAGGTTTGGTGG+AGG 0.605729 1.2:+46890930 None:intergenic
TTCAGGGAGCTAGTGTCTAG+AGG 0.610453 1.2:-46886609 MS.gene065293:CDS
CAGGGCTGACATATCCATAG+AGG 0.610631 1.2:+46886581 None:intergenic
CTGAACCGTACAATAGGCAA+CGG 0.610750 1.2:-46886966 MS.gene065293:CDS
AATAGCTTCCCGTCTTGGTG+TGG 0.611957 1.2:-46888703 MS.gene065293:CDS
TGTTCCATCTGCTTAAACCA+AGG 0.614998 1.2:+46890371 None:intergenic
GGAGACGACACCGATGACTA+CGG 0.620045 1.2:-46890806 MS.gene065293:CDS
GGAGTGGCTACGTCCAGCAG+TGG 0.623352 1.2:-46889021 MS.gene065293:CDS
GAATGGATTACCGTAGTCAT+CGG 0.625254 1.2:+46890796 None:intergenic
AATTTACTCAGCTGAATCGA+GGG 0.625957 1.2:-46890562 MS.gene065293:CDS
AAATTTACTCAGCTGAATCG+AGG 0.626415 1.2:-46890563 MS.gene065293:CDS
GATATGTCGGTTGAGAAAAG+TGG 0.626563 1.2:+46886877 None:intergenic
GGACTGAAGCTGTGGAGAAG+TGG 0.627526 1.2:+46890879 None:intergenic
GTCATATACACCATCTACGT+TGG 0.629232 1.2:+46886674 None:intergenic
TCTAGACACTAGCTCCCTGA+AGG 0.629448 1.2:+46886611 None:intergenic
CTGAAGCTGTGGAGAAGTGG+TGG 0.635236 1.2:+46890882 None:intergenic
ACTGTACCTCCACACCAAGA+CGG 0.637094 1.2:+46888694 None:intergenic
TTTGGATTGGACTGAAGCTG+TGG 0.637149 1.2:+46890871 None:intergenic
TGAGAATCAATCGAAGAGTG+TGG 0.640729 1.2:-46890486 MS.gene065293:CDS
CCAGTTTCAAGCGGTAACGG+TGG 0.641657 1.2:-46890677 MS.gene065293:CDS
GGTGGTGGTTGTTATCGTCG+TGG 0.653354 1.2:+46890954 None:intergenic
TTCCTGCTTCCATTTCACCT+AGG 0.659097 1.2:-46890295 MS.gene065293:CDS
TAGCTTCAATGGTGAGTGAG+CGG 0.663163 1.2:-46890511 MS.gene065293:CDS
CGGTCAAAACCAGTTTCAAG+CGG 0.669447 1.2:-46890686 MS.gene065293:CDS
CATTGTCAAACCTTAGATGG+CGG 0.680970 1.2:-46888969 MS.gene065293:CDS
TGTGGAACAGTGTAAGAACA+AGG 0.689866 1.2:-46890468 MS.gene065293:CDS
GGTGGTTGTTATCGTCGTGG+AGG 0.717958 1.2:+46890957 None:intergenic
GTCAGCCCTGACATTCTGCG+AGG 0.718203 1.2:-46886568 MS.gene065293:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTAGAAAATTATATAGAA+AGG + chr1.2:46890603-46890622 None:intergenic 10.0%
!! AAATGCTATTAAAATTAAGT+AGG - chr1.2:46890198-46890217 MS.gene065293:intron 15.0%
!! AAATGCTATTAAAATTAAGT+AGG + chr1.2:46890217-46890198 None:intergenic 15.0%
!! AATGCTATTAAAATTAAGTA+GGG - chr1.2:46890199-46890218 MS.gene065293:intron 15.0%
!! AATGCTATTAAAATTAAGTA+GGG + chr1.2:46890218-46890199 None:intergenic 15.0%
!! AGATAAAAAGTAATAAAATC+TGG + chr1.2:46889978-46889997 None:intergenic 15.0%
!! TAAAGATTAAAATGATCTTA+TGG + chr1.2:46889697-46889716 None:intergenic 15.0%
!! TTCAAAAATTTAAGAGTTTA+AGG - chr1.2:46890109-46890128 MS.gene065293:intron 15.0%
!! TTCAATGTATATTCTATTTA+TGG - chr1.2:46888944-46888963 MS.gene065293:CDS 15.0%
!!! AAACATAAAATTTTCAGATT+CGG + chr1.2:46887315-46887334 None:intergenic 15.0%
!!! CGTATTTAGTTTATTAATTA+TGG - chr1.2:46887528-46887547 MS.gene065293:intron 15.0%
!!! CTCATTTTAAAAAAGAAAAT+TGG - chr1.2:46889239-46889258 MS.gene065293:intron 15.0%
!!! TAAGATCATTTTAATCTTTA+TGG - chr1.2:46889697-46889716 MS.gene065293:intron 15.0%
!! AAACAAATTTGAATTGAGTA+GGG + chr1.2:46889848-46889867 None:intergenic 20.0%
!! AATAAATTTAAGCAAGCAAA+TGG + chr1.2:46888662-46888681 None:intergenic 20.0%
!! AATATTACAAGAATAAGAAC+AGG + chr1.2:46888340-46888359 None:intergenic 20.0%
!! ATATTACAAGAATAAGAACA+GGG + chr1.2:46888339-46888358 None:intergenic 20.0%
!! ATGCGATATTAGTAAAAATA+CGG + chr1.2:46888016-46888035 None:intergenic 20.0%
!! CTTTATGGTTAATATATCTT+GGG - chr1.2:46889712-46889731 MS.gene065293:intron 20.0%
!! GTATTAAACAATATCTAAAG+CGG + chr1.2:46890943-46890962 None:intergenic 20.0%
!! TAAACAAATTTGAATTGAGT+AGG + chr1.2:46889849-46889868 None:intergenic 20.0%
!! TCTTTATGGTTAATATATCT+TGG - chr1.2:46889711-46889730 MS.gene065293:intron 20.0%
!! TTGATTTAGTTAAATGCTTA+TGG - chr1.2:46887180-46887199 MS.gene065293:intron 20.0%
!! TTTGATGTGCTAAAAAATAA+GGG - chr1.2:46887408-46887427 MS.gene065293:intron 20.0%
!!! AAATCACTTTAGAAGATATA+TGG + chr1.2:46890274-46890293 None:intergenic 20.0%
!!! AATCACTTTAGAAGATATAT+GGG + chr1.2:46890273-46890292 None:intergenic 20.0%
!!! AATTGGAAATTTGAACTTTT+AGG - chr1.2:46889256-46889275 MS.gene065293:intron 20.0%
!!! AATTTTGCGATAATTTTTTG+CGG + chr1.2:46889943-46889962 None:intergenic 20.0%
!!! ACTTTATTTTGAACTTGATT+TGG - chr1.2:46887821-46887840 MS.gene065293:intron 20.0%
!!! TAATTTGTGAACTTGAAATA+TGG + chr1.2:46888187-46888206 None:intergenic 20.0%
!!! TATATTATTTCTTTTCCAAC+TGG - chr1.2:46889343-46889362 MS.gene065293:intron 20.0%
!!! TTACGACAATGATTTATTTT+TGG - chr1.2:46889497-46889516 MS.gene065293:intron 20.0%
!!! TTCATGTATTTTCTTTTTGA+TGG + chr1.2:46888991-46889010 None:intergenic 20.0%
!!! TTTGCTGTTTTTGTTTTAAT+TGG - chr1.2:46887352-46887371 MS.gene065293:intron 20.0%
! AAAGGAAGAGTTGTTATATT+TGG - chr1.2:46890494-46890513 MS.gene065293:CDS 25.0%
! AGTGCAGAAAAACAAAATTA+GGG + chr1.2:46889815-46889834 None:intergenic 25.0%
! ATAATTGTATGTTGAGTGTT+TGG - chr1.2:46887781-46887800 MS.gene065293:intron 25.0%
! ATCTAATTGAATAACGAACA+AGG + chr1.2:46887633-46887652 None:intergenic 25.0%
! ATGAATATCCTGATTACAAA+TGG - chr1.2:46889032-46889051 MS.gene065293:intron 25.0%
! ATTTGTAATCAGGATATTCA+TGG + chr1.2:46889033-46889052 None:intergenic 25.0%
! CAAAATCAACTTTGTATAAC+AGG - chr1.2:46887980-46887999 MS.gene065293:intron 25.0%
! CAAGCATCAAAAATTCATTT+AGG + chr1.2:46889573-46889592 None:intergenic 25.0%
! CACTCCATATCTAAAAATAA+AGG + chr1.2:46888384-46888403 None:intergenic 25.0%
! CATATCTAAAAATAAAGGAG+GGG + chr1.2:46888379-46888398 None:intergenic 25.0%
! CCATATCTAAAAATAAAGGA+GGG + chr1.2:46888380-46888399 None:intergenic 25.0%
! CTTGAAGATATCATGAAATA+TGG + chr1.2:46888163-46888182 None:intergenic 25.0%
! GAATGACATTCAAACTATAA+TGG + chr1.2:46888301-46888320 None:intergenic 25.0%
! GTCTGGTTATATTATATATG+TGG - chr1.2:46888576-46888595 MS.gene065293:CDS 25.0%
! GTTTGATGTGCTAAAAAATA+AGG - chr1.2:46887407-46887426 MS.gene065293:intron 25.0%
! TAATTGTATGTTGAGTGTTT+GGG - chr1.2:46887782-46887801 MS.gene065293:intron 25.0%
! TCCATATCTAAAAATAAAGG+AGG + chr1.2:46888381-46888400 None:intergenic 25.0%
! TTAGTTAAATGCTTATGGAT+TGG - chr1.2:46887185-46887204 MS.gene065293:intron 25.0%
! TTTGATATGTTAGCAAGTTT+GGG - chr1.2:46887754-46887773 MS.gene065293:intron 25.0%
!! AACTTCATTTGAAACTAACA+TGG + chr1.2:46888694-46888713 None:intergenic 25.0%
!! CTGCAACTATATTTCATTTT+AGG + chr1.2:46888557-46888576 None:intergenic 25.0%
!! CTTTTTACTTGACATGTTTA+AGG - chr1.2:46887689-46887708 MS.gene065293:intron 25.0%
!! TTCAAGTTCACAAATTACAT+GGG - chr1.2:46888190-46888209 MS.gene065293:intron 25.0%
!! TTCGATACGTTTAGATTTTA+GGG - chr1.2:46887251-46887270 MS.gene065293:intron 25.0%
!! TTTTGATATGTTAGCAAGTT+TGG - chr1.2:46887753-46887772 MS.gene065293:intron 25.0%
!!! AATCAATCTTTGTTTTAGCA+GGG - chr1.2:46890138-46890157 MS.gene065293:intron 25.0%
!!! AGAGTTGTTCTAAAAATTAG+TGG - chr1.2:46888473-46888492 MS.gene065293:intron 25.0%
!!! AGGTTGATAATTTGAAGAAA+AGG - chr1.2:46886971-46886990 MS.gene065293:CDS 25.0%
!!! CTTTATTTTTAGATATGGAG+TGG - chr1.2:46888382-46888401 MS.gene065293:intron 25.0%
!!! GAAATTTGAACTTTTAGGTA+GGG - chr1.2:46889261-46889280 MS.gene065293:intron 25.0%
!!! TAATCAATCTTTGTTTTAGC+AGG - chr1.2:46890137-46890156 MS.gene065293:intron 25.0%
!!! TACAATGTCGCTATTTTATA+GGG + chr1.2:46889755-46889774 None:intergenic 25.0%
!!! TGTTCTAAAAATTAGTGGAT+CGG - chr1.2:46888478-46888497 MS.gene065293:intron 25.0%
!!! TTACAATGTCGCTATTTTAT+AGG + chr1.2:46889756-46889775 None:intergenic 25.0%
!!! TTTCAAGTTCACAAATTACA+TGG - chr1.2:46888189-46888208 MS.gene065293:intron 25.0%
AAACTAAATACGTAAGTCCT+GGG + chr1.2:46887520-46887539 None:intergenic 30.0%
AACTACTTAGCATTGCAAAT+TGG + chr1.2:46888233-46888252 None:intergenic 30.0%
AATGAAATATAGTTGCAGTC+TGG - chr1.2:46888559-46888578 MS.gene065293:CDS 30.0%
ACTTCTACTTAAACAAAGCT+TGG - chr1.2:46887954-46887973 MS.gene065293:intron 30.0%
ATAGAAAAGATCGAGAAGAA+TGG - chr1.2:46886791-46886810 MS.gene065293:intron 30.0%
CAAATTGGAATTAAGAGCTT+AGG + chr1.2:46888218-46888237 None:intergenic 30.0%
CAAGATTAGAACACTATGAA+AGG + chr1.2:46890075-46890094 None:intergenic 30.0%
CAGTGCAGAAAAACAAAATT+AGG + chr1.2:46889816-46889835 None:intergenic 30.0%
GCTTGCTTAAATTTATTGTC+AGG - chr1.2:46888665-46888684 MS.gene065293:intron 30.0%
TAAACTAAATACGTAAGTCC+TGG + chr1.2:46887521-46887540 None:intergenic 30.0%
TCTTAAATTTGTCAGCATGA+TGG - chr1.2:46890337-46890356 MS.gene065293:CDS 30.0%
TGCTTAAATTTATTGTCAGG+TGG - chr1.2:46888668-46888687 MS.gene065293:intron 30.0%
TTCAATATGCTGCAAAACAA+AGG + chr1.2:46889430-46889449 None:intergenic 30.0%
TTCTTTCTTTGTGATACTTC+AGG - chr1.2:46888810-46888829 MS.gene065293:intron 30.0%
TTGATTGTGTTGTCATTGTT+TGG - chr1.2:46888274-46888293 MS.gene065293:intron 30.0%
TTTACTTGACATGTTTAAGG+TGG - chr1.2:46887692-46887711 MS.gene065293:intron 30.0%
TTTATCATCATCAGCAAACT+TGG + chr1.2:46887097-46887116 None:intergenic 30.0%
! ATATGAGATCAGTGTTTTCA+TGG - chr1.2:46889634-46889653 MS.gene065293:intron 30.0%
! CAATCAACTTTAGAGAAGAT+GGG - chr1.2:46890386-46890405 MS.gene065293:CDS 30.0%
! CACTAGGATTTGAAACTATA+TGG - chr1.2:46888087-46888106 MS.gene065293:intron 30.0%
! CTTCGATACGTTTAGATTTT+AGG - chr1.2:46887250-46887269 MS.gene065293:intron 30.0%
! TAAAGTTGATTGAAGCAGTA+AGG + chr1.2:46890378-46890397 None:intergenic 30.0%
! TCAATCAACTTTAGAGAAGA+TGG - chr1.2:46890385-46890404 MS.gene065293:CDS 30.0%
! TTTTGATGCTTGCACTTTAT+TGG - chr1.2:46889581-46889600 MS.gene065293:intron 30.0%
!! CAATGCTAAGTAGTTTTACT+TGG - chr1.2:46888238-46888257 MS.gene065293:intron 30.0%
!! GGAAATTTGAACTTTTAGGT+AGG - chr1.2:46889260-46889279 MS.gene065293:intron 30.0%
!! TACAAGGTCGCTATTTTATA+GGG - chr1.2:46890230-46890249 MS.gene065293:intron 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG - chr1.2:46890229-46890248 MS.gene065293:intron 30.0%
!!! AGATTTTAGGGTAGGATTTT+TGG - chr1.2:46887263-46887282 MS.gene065293:intron 30.0%
!!! ATACGTTTAGATTTTAGGGT+AGG - chr1.2:46887255-46887274 MS.gene065293:intron 30.0%
!!! CCCTCCTTTATTTTTAGATA+TGG - chr1.2:46888377-46888396 MS.gene065293:intron 30.0%
AAATGAACACACGACAAACA+CGG + chr1.2:46887454-46887473 None:intergenic 35.0%
AAATTTACTCAGCTGAATCG+AGG - chr1.2:46886856-46886875 MS.gene065293:CDS 35.0%
AAGCAGATGGAACATATTGT+TGG - chr1.2:46887057-46887076 MS.gene065293:CDS 35.0%
AAGCTTCAGCTAAACTGAAT+AGG + chr1.2:46888788-46888807 None:intergenic 35.0%
AAGTAGGGACTAAACTTACA+AGG - chr1.2:46890214-46890233 MS.gene065293:intron 35.0%
AATATTGACCCTAAGGTTTG+TGG - chr1.2:46888524-46888543 MS.gene065293:CDS 35.0%
AATTTACTCAGCTGAATCGA+GGG - chr1.2:46886857-46886876 MS.gene065293:CDS 35.0%
AGCAGATGGAACATATTGTT+GGG - chr1.2:46887058-46887077 MS.gene065293:CDS 35.0%
ATAGTATTGCTTACCAGGAA+TGG + chr1.2:46890883-46890902 None:intergenic 35.0%
ATATTGACCCTAAGGTTTGT+GGG - chr1.2:46888525-46888544 MS.gene065293:CDS 35.0%
ATGCAATAGTATTGCTTACC+AGG + chr1.2:46890888-46890907 None:intergenic 35.0%
CATCTTCATGTATTGCACAT+GGG - chr1.2:46889609-46889628 MS.gene065293:intron 35.0%
CATGTGCAATACATGAAGAT+GGG + chr1.2:46889610-46889629 None:intergenic 35.0%
CGTATGGATTCAACAACAAA+CGG - chr1.2:46886713-46886732 MS.gene065293:intron 35.0%
CTTGCCAAAAATATCCATGT+GGG + chr1.2:46890668-46890687 None:intergenic 35.0%
GAAGTGAGTGATTGATGTTT+GGG - chr1.2:46887858-46887877 MS.gene065293:intron 35.0%
GAATCTAAGAGGAAGAGATT+GGG - chr1.2:46886879-46886898 MS.gene065293:CDS 35.0%
GATTACAAATGGATGATCCA+AGG - chr1.2:46889043-46889062 MS.gene065293:intron 35.0%
GCTGACAAATTTAAGAACTC+AGG + chr1.2:46890333-46890352 None:intergenic 35.0%
GGAAAGAGTAATAGATGATG+CGG + chr1.2:46890635-46890654 None:intergenic 35.0%
GGAAGAGTTGTTATATTTGG+TGG - chr1.2:46890497-46890516 MS.gene065293:CDS 35.0%
GTAAGCAATACTATTGCATC+TGG - chr1.2:46890889-46890908 MS.gene065293:CDS 35.0%
GTGTGTATATTTCTTCTCTG+TGG + chr1.2:46887589-46887608 None:intergenic 35.0%
TAAAACTGAACACACACACT+AGG - chr1.2:46888071-46888090 MS.gene065293:intron 35.0%
TCTAAAAATAAAGGAGGGGA+AGG + chr1.2:46888375-46888394 None:intergenic 35.0%
TGAAGTGAGTGATTGATGTT+TGG - chr1.2:46887857-46887876 MS.gene065293:intron 35.0%
TGGATCATCCATTTGTAATC+AGG + chr1.2:46889043-46889062 None:intergenic 35.0%
TGTAGAATCTTAGCATTGCA+TGG - chr1.2:46887722-46887741 MS.gene065293:intron 35.0%
TGTGCTAAAAAATAAGGGAC+CGG - chr1.2:46887413-46887432 MS.gene065293:intron 35.0%
TGTTTAAGTAGAAGTGAGAG+TGG + chr1.2:46887949-46887968 None:intergenic 35.0%
TTAAACCTCTTAGATTGCCT+AGG + chr1.2:46887144-46887163 None:intergenic 35.0%
! AAGCATTGTCAAACCTTAGA+TGG - chr1.2:46888447-46888466 MS.gene065293:intron 35.0%
! AGAAAAGGTATAAGCTAGAG+AGG - chr1.2:46886986-46887005 MS.gene065293:CDS 35.0%
! AGTGTGTGTGTTCAGTTTTA+CGG + chr1.2:46888071-46888090 None:intergenic 35.0%
! AGTTCTCATGATTTTCCTCT+AGG - chr1.2:46888745-46888764 MS.gene065293:intron 35.0%
! GAGAGGCATAGAATGAATAA+TGG - chr1.2:46887003-46887022 MS.gene065293:CDS 35.0%
! GTTCTCATGATTTTCCTCTA+GGG - chr1.2:46888746-46888765 MS.gene065293:intron 35.0%
! GTTGTTATATTTGGTGGCAT+TGG - chr1.2:46890503-46890522 MS.gene065293:CDS 35.0%
! GTTTACTTTGAAAGCAAGCT+TGG - chr1.2:46887884-46887903 MS.gene065293:intron 35.0%
! TAGCACTTCTATGTTTTCCT+TGG + chr1.2:46889063-46889082 None:intergenic 35.0%
! TCAACCCACATGGATATTTT+TGG - chr1.2:46890661-46890680 MS.gene065293:CDS 35.0%
! TCTAAGGTTTGACAATGCTT+TGG + chr1.2:46888447-46888466 None:intergenic 35.0%
!! AACTTTGACTTGTATGGGAT+TGG - chr1.2:46889151-46889170 MS.gene065293:intron 35.0%
!! AGCAAGCTTGGTGTAAAATT+TGG - chr1.2:46887896-46887915 MS.gene065293:intron 35.0%
!! ATAGAAGTGCTAGTTGAAGT+TGG - chr1.2:46889071-46889090 MS.gene065293:intron 35.0%
!! ATTGCATCTGGTCTTTTCAT+GGG - chr1.2:46890901-46890920 MS.gene065293:CDS 35.0%
!! GAGTGAACTTTGACTTGTAT+GGG - chr1.2:46889146-46889165 MS.gene065293:intron 35.0%
!! GCTAAGTAGTTTTACTTGGA+TGG - chr1.2:46888242-46888261 MS.gene065293:intron 35.0%
!! TAGAAGTGCTAGTTGAAGTT+GGG - chr1.2:46889072-46889091 MS.gene065293:intron 35.0%
!! TATTGCATCTGGTCTTTTCA+TGG - chr1.2:46890900-46890919 MS.gene065293:CDS 35.0%
!!! ATATTTGGTGGCATTGGTTT+TGG - chr1.2:46890509-46890528 MS.gene065293:CDS 35.0%
AAACCAGTTTCAAGCGGTAA+CGG - chr1.2:46886739-46886758 MS.gene065293:intron 40.0%
AACCTTAGGGTCAATATTGC+AGG + chr1.2:46888522-46888541 None:intergenic 40.0%
AAGAGTAATAGATGATGCGG+AGG + chr1.2:46890632-46890651 None:intergenic 40.0%
AGAGTAATAGATGATGCGGA+GGG + chr1.2:46890631-46890650 None:intergenic 40.0%
AGATGTACTGCATACCAAGT+TGG - chr1.2:46888901-46888920 MS.gene065293:intron 40.0%
AGCAAAATACAAGACCCTAG+AGG + chr1.2:46888763-46888782 None:intergenic 40.0%
AGGGTCAATATTGCAGGTAT+CGG + chr1.2:46888516-46888535 None:intergenic 40.0%
ATCTTAGCATTGCATGGCAT+AGG - chr1.2:46887728-46887747 MS.gene065293:intron 40.0%
ATTTCTTCTGTGGAGATGCA+TGG - chr1.2:46888857-46888876 MS.gene065293:intron 40.0%
CATTGTCAAACCTTAGATGG+CGG - chr1.2:46888450-46888469 MS.gene065293:intron 40.0%
CCATCTTCATGTATTGCACA+TGG - chr1.2:46889608-46889627 MS.gene065293:intron 40.0%
CCATGTGCAATACATGAAGA+TGG + chr1.2:46889611-46889630 None:intergenic 40.0%
CTTAGATTGCCTAGGTGAAA+TGG + chr1.2:46887136-46887155 None:intergenic 40.0%
CTTCAGGTAGCAATTGTTGT+TGG - chr1.2:46888826-46888845 MS.gene065293:intron 40.0%
GATGTACTGCATACCAAGTT+GGG - chr1.2:46888902-46888921 MS.gene065293:intron 40.0%
GCTTGCCAAAAATATCCATG+TGG + chr1.2:46890669-46890688 None:intergenic 40.0%
GGAATCTAAGAGGAAGAGAT+TGG - chr1.2:46886878-46886897 MS.gene065293:CDS 40.0%
GTACATTCCCACAAACCTTA+GGG + chr1.2:46888535-46888554 None:intergenic 40.0%
GTCATATACACCATCTACGT+TGG + chr1.2:46890748-46890767 None:intergenic 40.0%
GTGATTAACCTTACCCAACT+TGG + chr1.2:46888918-46888937 None:intergenic 40.0%
GTTGCATTTCTGCTAGTCAT+TGG - chr1.2:46887025-46887044 MS.gene065293:CDS 40.0%
TACCTGCAATATTGACCCTA+AGG - chr1.2:46888517-46888536 MS.gene065293:intron 40.0%
TATTGTTGGGAATTCGCTTC+CGG - chr1.2:46887071-46887090 MS.gene065293:intron 40.0%
TGAGAATCAATCGAAGAGTG+TGG - chr1.2:46886933-46886952 MS.gene065293:CDS 40.0%
TGTGGAACAGTGTAAGAACA+AGG - chr1.2:46886951-46886970 MS.gene065293:CDS 40.0%
TGTTCCATCTGCTTAAACCA+AGG + chr1.2:46887051-46887070 None:intergenic 40.0%
TTGGGAAGAAGTAGCTTCAA+TGG - chr1.2:46886897-46886916 MS.gene065293:CDS 40.0%
TTTAGGTAGGGCTGTAAATG+TGG - chr1.2:46889273-46889292 MS.gene065293:intron 40.0%
TTTCACCTAGGCAATCTAAG+AGG - chr1.2:46887136-46887155 MS.gene065293:intron 40.0%
TTTCGAGCACATATCCTTCA+GGG - chr1.2:46890794-46890813 MS.gene065293:CDS 40.0%
TTTCTTCTGTGGAGATGCAT+GGG - chr1.2:46888858-46888877 MS.gene065293:intron 40.0%
! ATTTTCCTCGCAGAATGTCA+GGG + chr1.2:46890859-46890878 None:intergenic 40.0%
! GATATGTCGGTTGAGAAAAG+TGG + chr1.2:46890545-46890564 None:intergenic 40.0%
! TTGACAATGCTTTGGACTTC+AGG + chr1.2:46888439-46888458 None:intergenic 40.0%
!! ATAGCGACTATCGATTCAGA+TGG - chr1.2:46888039-46888058 MS.gene065293:intron 40.0%
!! GAATGGATTACCGTAGTCAT+CGG + chr1.2:46886626-46886645 None:intergenic 40.0%
!! GGAGTGAACTTTGACTTGTA+TGG - chr1.2:46889145-46889164 MS.gene065293:intron 40.0%
!! GTAGTTTTACTTGGATGGAG+TGG - chr1.2:46888247-46888266 MS.gene065293:intron 40.0%
!! TTGCATCTGGTCTTTTCATG+GGG - chr1.2:46890902-46890921 MS.gene065293:CDS 40.0%
AACTGGATGTGCTTTGCTGA+TGG - chr1.2:46889360-46889379 MS.gene065293:intron 45.0%
ACAGTGCCAATTTAACCTCC+TGG + chr1.2:46889315-46889334 None:intergenic 45.0%
ATCAGCAAAGCACATCCAGT+TGG + chr1.2:46889361-46889380 None:intergenic 45.0%
ATTCTCCATGTTCCTTGCAG+TGG - chr1.2:46890981-46891000 MS.gene065293:CDS 45.0%
CAATCCCGGAAAAGGAGTAA+GGG + chr1.2:46887495-46887514 None:intergenic 45.0%
CATCTACGTTGGTACCTTTG+AGG + chr1.2:46890737-46890756 None:intergenic 45.0%
CGGTCAAAACCAGTTTCAAG+CGG - chr1.2:46886733-46886752 MS.gene065293:intron 45.0%
CTGAACCGTACAATAGGCAA+CGG - chr1.2:46890453-46890472 MS.gene065293:CDS 45.0%
CTGAATCGAGGGAATCTAAG+AGG - chr1.2:46886868-46886887 MS.gene065293:CDS 45.0%
CTTTCGAGCACATATCCTTC+AGG - chr1.2:46890793-46890812 MS.gene065293:CDS 45.0%
GAAATCCACTGCAAGGAACA+TGG + chr1.2:46890989-46891008 None:intergenic 45.0%
GAACCACCAGGAGGTTAAAT+TGG - chr1.2:46889306-46889325 MS.gene065293:intron 45.0%
GCTAGTTGAAGTTGGGATGT+GGG - chr1.2:46889079-46889098 MS.gene065293:intron 45.0%
GGAGGCAGTTGCTATCTAAT+TGG + chr1.2:46889182-46889201 None:intergenic 45.0%
GGAGGTCGTAATTTCTTCTG+TGG - chr1.2:46888847-46888866 MS.gene065293:intron 45.0%
GGTACATTCCCACAAACCTT+AGG + chr1.2:46888536-46888555 None:intergenic 45.0%
TAGCTTCAATGGTGAGTGAG+CGG - chr1.2:46886908-46886927 MS.gene065293:CDS 45.0%
TCAATCCCGGAAAAGGAGTA+AGG + chr1.2:46887496-46887515 None:intergenic 45.0%
TCATCATCAGCAAACTTGGC+CGG + chr1.2:46887093-46887112 None:intergenic 45.0%
TCCTTTCTCAAGATGCCTGA+TGG + chr1.2:46890480-46890499 None:intergenic 45.0%
TCTATACTCTGCTCCTACTC+CGG + chr1.2:46886776-46886795 None:intergenic 45.0%
TGAACCGTACAATAGGCAAC+GGG - chr1.2:46890454-46890473 MS.gene065293:CDS 45.0%
TGCTAGTTGAAGTTGGGATG+TGG - chr1.2:46889078-46889097 MS.gene065293:intron 45.0%
TGGATCATTGGAGTGCAAAG+AGG - chr1.2:46889204-46889223 MS.gene065293:intron 45.0%
TTCCTGCTTCCATTTCACCT+AGG - chr1.2:46887124-46887143 MS.gene065293:intron 45.0%
TTTGCACTCCAATGATCCAG+AGG + chr1.2:46889203-46889222 None:intergenic 45.0%
! AAGGTCAGAAGTGCAACTCT+AGG + chr1.2:46889411-46889430 None:intergenic 45.0%
! ACTGCATACCAAGTTGGGTA+AGG - chr1.2:46888907-46888926 MS.gene065293:CDS 45.0%
! AGGTGGTGATGTGTTTGGAT+TGG + chr1.2:46886564-46886583 None:intergenic 45.0%
! ATGCTCCCTTACTCCTTTTC+CGG - chr1.2:46887487-46887506 MS.gene065293:intron 45.0%
! ATTAGTGGATCGGCACTTAC+TGG - chr1.2:46888488-46888507 MS.gene065293:intron 45.0%
! CAGGTAGCAATTGTTGTTGG+AGG - chr1.2:46888829-46888848 MS.gene065293:intron 45.0%
! CATTTTCCTCGCAGAATGTC+AGG + chr1.2:46890860-46890879 None:intergenic 45.0%
! CGTTTGCTGAACCGTACAAT+AGG - chr1.2:46890447-46890466 MS.gene065293:CDS 45.0%
! GTGTGTGTTCAGTTTTACGG+AGG + chr1.2:46888068-46888087 None:intergenic 45.0%
! TCAGAAGTGCAACTCTAGGA+AGG + chr1.2:46889407-46889426 None:intergenic 45.0%
! TTTCTGCTAGTCATTGGCCT+TGG - chr1.2:46887031-46887050 MS.gene065293:CDS 45.0%
! TTTGGATTGGACTGAAGCTG+TGG + chr1.2:46886551-46886570 None:intergenic 45.0%
!! AAAGAGAGCATCTTGGTGAC+AGG - chr1.2:46889102-46889121 MS.gene065293:intron 45.0%
!! ATGTGGGAAAGAGAGCATCT+TGG - chr1.2:46889095-46889114 MS.gene065293:intron 45.0%
!! CTCAAAGGTACCAACGTAGA+TGG - chr1.2:46890735-46890754 MS.gene065293:CDS 45.0%
!! TGCATCTGGTCTTTTCATGG+GGG - chr1.2:46890903-46890922 MS.gene065293:CDS 45.0%
!! TTGGCCTTGGTTTAAGCAGA+TGG - chr1.2:46887044-46887063 MS.gene065293:CDS 45.0%
!!! TCTTTTCATGGGGGTGTTTC+AGG - chr1.2:46890912-46890931 MS.gene065293:CDS 45.0%
!!! ATAAGTAATTTTTTTTTATA+GGG - chr1.2:46890170-46890189 MS.gene065293:intron 5.0%
!!! TATAAGTAATTTTTTTTTAT+AGG - chr1.2:46890169-46890188 MS.gene065293:intron 5.0%
AACTGCCTCCTCTGGATCAT+TGG - chr1.2:46889192-46889211 MS.gene065293:intron 50.0%
AATAGCTTCCCGTCTTGGTG+TGG - chr1.2:46888716-46888735 MS.gene065293:CDS 50.0%
AATCCATTCGACGATGACGC+TGG - chr1.2:46886637-46886656 MS.gene065293:CDS 50.0%
AATGCTCAGGCTGTCCTCAA+AGG - chr1.2:46890720-46890739 MS.gene065293:CDS 50.0%
ACGGAACATCTGACGTTGTC+CGG + chr1.2:46887435-46887454 None:intergenic 50.0%
ACTGTACCTCCACACCAAGA+CGG + chr1.2:46888728-46888747 None:intergenic 50.0%
AGGGCTGTAAATGTGGAGTG+AGG - chr1.2:46889280-46889299 MS.gene065293:intron 50.0%
ATGGCCCGTTGCCTATTGTA+CGG + chr1.2:46890461-46890480 None:intergenic 50.0%
CAGGGCTGACATATCCATAG+AGG + chr1.2:46890841-46890860 None:intergenic 50.0%
CTGCTCTGCAGTTAATGCTC+AGG - chr1.2:46890707-46890726 MS.gene065293:CDS 50.0%
GAACAACTCTCCGCCATCTA+AGG + chr1.2:46888463-46888482 None:intergenic 50.0%
GATGCATGGGTAACTGCAAC+TGG - chr1.2:46888871-46888890 MS.gene065293:intron 50.0%
GCCATCAGGCATCTTGAGAA+AGG - chr1.2:46890476-46890495 MS.gene065293:CDS 50.0%
GTAAGTCCTGGGTTCAATCC+CGG + chr1.2:46887509-46887528 None:intergenic 50.0%
GTGCCAATTTAACCTCCTGG+TGG + chr1.2:46889312-46889331 None:intergenic 50.0%
GTTGCAATAGCTTCCCGTCT+TGG - chr1.2:46888711-46888730 MS.gene065293:CDS 50.0%
GTTTACTTGACCTCCACTGC+TGG + chr1.2:46888414-46888433 None:intergenic 50.0%
TAGATAGCAACTGCCTCCTC+TGG - chr1.2:46889184-46889203 MS.gene065293:intron 50.0%
TCTAGACACTAGCTCCCTGA+AGG + chr1.2:46890811-46890830 None:intergenic 50.0%
TGCCTAGGTGAAATGGAAGC+AGG + chr1.2:46887129-46887148 None:intergenic 50.0%
TGCGAGGAAAATGCCATTCC+TGG - chr1.2:46890867-46890886 MS.gene065293:CDS 50.0%
TTCAGGGAGCTAGTGTCTAG+AGG - chr1.2:46890810-46890829 MS.gene065293:CDS 50.0%
! TGCTCCCTTACTCCTTTTCC+GGG - chr1.2:46887488-46887507 MS.gene065293:intron 50.0%
!! ATCCATGTGGGTTGATGCGA+GGG + chr1.2:46890656-46890675 None:intergenic 50.0%
!! GTCTAGAGGTGTCACCTCTA+TGG - chr1.2:46890824-46890843 MS.gene065293:CDS 50.0%
!! TATCCATGTGGGTTGATGCG+AGG + chr1.2:46890657-46890676 None:intergenic 50.0%
ACAATAGGCAACGGGCCATC+AGG - chr1.2:46890462-46890481 MS.gene065293:CDS 55.0%
CAAAGTTCACTCCCCTGCTG+TGG + chr1.2:46889138-46889157 None:intergenic 55.0%
CCACCGTTACCGCTTGAAAC+TGG + chr1.2:46886745-46886764 None:intergenic 55.0%
CCGAAGAGCAGCGGATATGT+CGG + chr1.2:46890558-46890577 None:intergenic 55.0%
CCGACATATCCGCTGCTCTT+CGG - chr1.2:46890555-46890574 MS.gene065293:CDS 55.0%
CCTGGGTTCAATCCCGGAAA+AGG + chr1.2:46887503-46887522 None:intergenic 55.0%
CGACATATCCGCTGCTCTTC+GGG - chr1.2:46890556-46890575 MS.gene065293:CDS 55.0%
CTACCAGCGTCATCGTCGAA+TGG + chr1.2:46886643-46886662 None:intergenic 55.0%
CTGAAGCTGTGGAGAAGTGG+TGG + chr1.2:46886540-46886559 None:intergenic 55.0%
CTGTACCTCCACACCAAGAC+GGG + chr1.2:46888727-46888746 None:intergenic 55.0%
GCACTCCAATGATCCAGAGG+AGG + chr1.2:46889200-46889219 None:intergenic 55.0%
GGACTGAAGCTGTGGAGAAG+TGG + chr1.2:46886543-46886562 None:intergenic 55.0%
GGAGACGACACCGATGACTA+CGG - chr1.2:46886613-46886632 MS.gene065293:CDS 55.0%
GGTGGTTGTTATCGTCGTGG+AGG + chr1.2:46886465-46886484 None:intergenic 55.0%
GTTGAGTGTTTGGGCGAGAG+TGG - chr1.2:46887791-46887810 MS.gene065293:intron 55.0%
TGCGATGCAACGACGTCGTA+TGG - chr1.2:46886697-46886716 MS.gene065293:CDS 55.0%
TTCCCTCGCATCAACCCACA+TGG - chr1.2:46890651-46890670 MS.gene065293:CDS 55.0%
! AGCATCTTGGTGACAGGCCA+GGG - chr1.2:46889108-46889127 MS.gene065293:intron 55.0%
! CCAGTTTCAAGCGGTAACGG+TGG - chr1.2:46886742-46886761 MS.gene065293:intron 55.0%
! CCTTTTCCGGGATTGAACCC+AGG - chr1.2:46887500-46887519 MS.gene065293:intron 55.0%
! GACGGAGGTGGTGATGTGTT+TGG + chr1.2:46886569-46886588 None:intergenic 55.0%
! GGTGGTGGTTGTTATCGTCG+TGG + chr1.2:46886468-46886487 None:intergenic 55.0%
! GTTTCAAGCGGTAACGGTGG+AGG - chr1.2:46886745-46886764 MS.gene065293:intron 55.0%
!!! GGTGGCATTGGTTTTGGTGC+TGG - chr1.2:46890515-46890534 MS.gene065293:CDS 55.0%
GCTGCTCTTCGGGCTTCAGA+GGG - chr1.2:46890566-46890585 MS.gene065293:CDS 60.0%
GGAGTGAGGTCAGAACCACC+AGG - chr1.2:46889294-46889313 MS.gene065293:intron 60.0%
GGTGAGGTGCGAAGGTTTGG+TGG + chr1.2:46886495-46886514 None:intergenic 60.0%
GGTGGTGAGGTGCGAAGGTT+TGG + chr1.2:46886498-46886517 None:intergenic 60.0%
GTCAGCCCTGACATTCTGCG+AGG - chr1.2:46890851-46890870 MS.gene065293:CDS 60.0%
GTGAGGTCAGAACCACCAGG+AGG - chr1.2:46889297-46889316 MS.gene065293:intron 60.0%
! AGAAGTGGTGGTGCGAGTGG+TGG + chr1.2:46886528-46886547 None:intergenic 60.0%
! AGCTTCCCGTCTTGGTGTGG+AGG - chr1.2:46888719-46888738 MS.gene065293:CDS 60.0%
! GAGCATCTTGGTGACAGGCC+AGG - chr1.2:46889107-46889126 MS.gene065293:intron 60.0%
! TCTTGGTGACAGGCCAGGGA+AGG - chr1.2:46889112-46889131 MS.gene065293:intron 60.0%
! TGGAGAAGTGGTGGTGCGAG+TGG + chr1.2:46886531-46886550 None:intergenic 60.0%
!! AGGTTTGGTGGAGGTGGTGG+TGG + chr1.2:46886483-46886502 None:intergenic 60.0%
!! CGAAGGTTTGGTGGAGGTGG+TGG + chr1.2:46886486-46886505 None:intergenic 60.0%
!! CTCTGAAGCCCGAAGAGCAG+CGG + chr1.2:46890567-46890586 None:intergenic 60.0%
!! GAGGTGCGAAGGTTTGGTGG+AGG + chr1.2:46886492-46886511 None:intergenic 60.0%
!! GTGCGAAGGTTTGGTGGAGG+TGG + chr1.2:46886489-46886508 None:intergenic 60.0%
!! TGGTGGTTGTGGTGGTGGTG+AGG + chr1.2:46886511-46886530 None:intergenic 60.0%
CGCTGCTCTTCGGGCTTCAG+AGG - chr1.2:46890565-46890584 MS.gene065293:CDS 65.0%
GCGAGTGGTGGTTGTGGTGG+TGG + chr1.2:46886516-46886535 None:intergenic 65.0%
GGAGTGGCTACGTCCAGCAG+TGG - chr1.2:46888398-46888417 MS.gene065293:intron 65.0%
GGTGCGAGTGGTGGTTGTGG+TGG + chr1.2:46886519-46886538 None:intergenic 65.0%
GGTGGTGCGAGTGGTGGTTG+TGG + chr1.2:46886522-46886541 None:intergenic 65.0%
GTGGCTACGTCCAGCAGTGG+AGG - chr1.2:46888401-46888420 MS.gene065293:intron 65.0%
! GGTAACGGTGGAGGAAGCGC+CGG - chr1.2:46886754-46886773 MS.gene065293:intron 65.0%
! GGTGTCGTCTCCGTCGTCGT+CGG + chr1.2:46886605-46886624 None:intergenic 65.0%
!! GTGGTGGTGGTGAGGTGCGA+AGG + chr1.2:46886503-46886522 None:intergenic 65.0%
AGGCCAGGGAAGGCCACAGC+AGG - chr1.2:46889122-46889141 MS.gene065293:intron 70.0%
GCCAGGGAAGGCCACAGCAG+GGG - chr1.2:46889124-46889143 MS.gene065293:intron 70.0%
GGCCAGGGAAGGCCACAGCA+GGG - chr1.2:46889123-46889142 MS.gene065293:intron 70.0%
GTCTCCGTCGTCGTCGGCGA+CGG + chr1.2:46886599-46886618 None:intergenic 70.0%
TCCCCTGCTGTGGCCTTCCC+TGG + chr1.2:46889128-46889147 None:intergenic 70.0%
!! GGTGGAGGAAGCGCCGGAGT+AGG - chr1.2:46886760-46886779 MS.gene065293:intron 70.0%
TCCGTCGTCGTCGGCGACGG+CGG + chr1.2:46886596-46886615 None:intergenic 75.0%
! GACGGCGGCGGAGACGGAGG+TGG + chr1.2:46886581-46886600 None:intergenic 80.0%
! GCCGCCGTCGCCGACGACGA+CGG - chr1.2:46886592-46886611 MS.gene065293:CDS 80.0%
! GTCGGCGACGGCGGCGGAGA+CGG + chr1.2:46886587-46886606 None:intergenic 80.0%
! GTCGTCGTCGGCGACGGCGG+CGG + chr1.2:46886593-46886612 None:intergenic 80.0%
! GGCGACGGCGGCGGAGACGG+AGG + chr1.2:46886584-46886603 None:intergenic 85.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 46886427 46891014 46886427 ID=MS.gene065293
chr1.2 mRNA 46886427 46891014 46886427 ID=MS.gene065293.t1;Parent=MS.gene065293
chr1.2 exon 46890284 46891014 46890284 ID=MS.gene065293.t1.exon1;Parent=MS.gene065293.t1
chr1.2 CDS 46890284 46891014 46890284 ID=cds.MS.gene065293.t1;Parent=MS.gene065293.t1
chr1.2 exon 46888903 46889047 46888903 ID=MS.gene065293.t1.exon2;Parent=MS.gene065293.t1
chr1.2 CDS 46888903 46889047 46888903 ID=cds.MS.gene065293.t1;Parent=MS.gene065293.t1
chr1.2 exon 46888701 46888754 46888701 ID=MS.gene065293.t1.exon3;Parent=MS.gene065293.t1
chr1.2 CDS 46888701 46888754 46888701 ID=cds.MS.gene065293.t1;Parent=MS.gene065293.t1
chr1.2 exon 46888518 46888609 46888518 ID=MS.gene065293.t1.exon4;Parent=MS.gene065293.t1
chr1.2 CDS 46888518 46888609 46888518 ID=cds.MS.gene065293.t1;Parent=MS.gene065293.t1
chr1.2 exon 46886854 46887089 46886854 ID=MS.gene065293.t1.exon5;Parent=MS.gene065293.t1
chr1.2 CDS 46886854 46887089 46886854 ID=cds.MS.gene065293.t1;Parent=MS.gene065293.t1
chr1.2 exon 46886553 46886723 46886553 ID=MS.gene065293.t1.exon6;Parent=MS.gene065293.t1
chr1.2 CDS 46886553 46886723 46886553 ID=cds.MS.gene065293.t1;Parent=MS.gene065293.t1
chr1.2 exon 46886427 46886440 46886427 ID=MS.gene065293.t1.exon7;Parent=MS.gene065293.t1
chr1.2 CDS 46886427 46886440 46886427 ID=cds.MS.gene065293.t1;Parent=MS.gene065293.t1
Gene Sequence

>MS.gene065293

ATGGCTTCTTGCGACGACGACGACGATTTCTCTCTCCTCCACGACGATAACAACCACCACCACCTCCACCAAACCTTCGCACCTCACCACCACCACAACCACCACTCGCACCACCACTTCTCCACAGCTTCAGTCCAATCCAAACACATCACCACCTCCGTCTCCGCCGCCGTCGCCGACGACGACGGAGACGACACCGATGACTACGGTAATCCATTCGACGATGACGCTGGTAGCGAGAAACGTAAAGATCGAGATCGTGATGAGATCTGCGATGCAACGACGTCGTATGGATTCAACAACAAACGGTCAAAACCAGTTTCAAGCGGTAACGGTGGAGGAAGCGCCGGAGTAGGAGCAGAGTATAGAAAAGATCGAGAAGAATGGAGTGATACAGCGATAGTGTGTTTACTCGAAGCTTATACAGAGAAATTTACTCAGCTGAATCGAGGGAATCTAAGAGGAAGAGATTGGGAAGAAGTAGCTTCAATGGTGAGTGAGCGGTGTGAGAATCAATCGAAGAGTGTGGAACAGTGTAAGAACAAGGTTGATAATTTGAAGAAAAGGTATAAGCTAGAGAGGCATAGAATGAATAATGGTTGCATTTCTGCTAGTCATTGGCCTTGGTTTAAGCAGATGGAACATATTGTTGGGAATTCGCTTCCGGCCAAGTTTGCTGATGATGATAAAGCTATTGTTCCTGCTTCCATTTCACCTAGGCAATCTAAGAGGTTTAATCTGTTTCATAAATGCTTGATTTAGTTAAATGCTTATGGATTGGTATAGTATTAATGTGAAAATTCAAAACTTTATGACATTACTTCTTCGATACGTTTAGATTTTAGGGTAGGATTTTTGGAATAAATAGTCGATCTTTGAGTTTGACCGAATCTGAAAATTTTATGTTTTGTTTAGATGTGTTGCATTTGCTGTTTTTGTTTTAATTGGCAAATCTTAGTAGTCAGATTAAATATTTTCGTGTTTGATGTGCTAAAAAATAAGGGACCGGACAACGTCAGATGTTCCGTGTTTGTCGTGTGTTCATTTGTTCAGTACTTAAATGCTCCCTTACTCCTTTTCCGGGATTGAACCCAGGACTTACGTATTTAGTTTATTAATTATGGTGTTTTCAAATCTTGTGTTTGACTGTGCTCTATAACCACAGAGAAGAAATATACACACATTTTGTTTTTCATTTGAGTACCTTGTTCGTTATTCAATTAGATGCTTACAACTTGAATAAAGAAAACTTTGTAAAATTACTTTTTACTTGACATGTTTAAGGTGGTATATTTTGTAGAATCTTAGCATTGCATGGCATAGGTTTTTTGATATGTTAGCAAGTTTGGGCAGTATAATTGTATGTTGAGTGTTTGGGCGAGAGTGGTTGATAAACTTTATTTTGAACTTGATTTGGTTAAAATTCAGTTTGAAGTGAGTGATTGATGTTTGGGTTTGTTTACTTTGAAAGCAAGCTTGGTGTAAAATTTGGTGTAAATTTTTCAATTGAATGCAAAAACCACTCTCACTTCTACTTAAACAAAGCTTGGATGCAAAATCAACTTTGTATAACAGGAACTGCACATCCGTATTTTTACTAATATCGCATTTTATAGCGACTATCGATTCAGATGGTTTCCTCCGTAAAACTGAACACACACACTAGGATTTGAAACTATATGGAAGTTTTCTTCAATTGTATTGTTGCAATCTATATCATGATATCTTCAAGACCATATTTCATGATATCTTCAAGACCATATTTCAAGTTCACAAATTACATGGGAACCTAAGCTCTTAATTCCAATTTGCAATGCTAAGTAGTTTTACTTGGATGGAGTGGCATATTGATTGTGTTGTCATTGTTTGGACCATTATAGTTTGAATGTCATTCATCATGCAGTGTTTTCCCTGTTCTTATTCTTGTAATATTGTGAATATTGAGCCTTCCCCTCCTTTATTTTTAGATATGGAGTGGCTACGTCCAGCAGTGGAGGTCAAGTAAACAGCCTGAAGTCCAAAGCATTGTCAAACCTTAGATGGCGGAGAGTTGTTCTAAAAATTAGTGGATCGGCACTTACTGGATCCGATACCTGCAATATTGACCCTAAGGTTTGTGGGAATGTACCTAAAATGAAATATAGTTGCAGTCTGGTTATATTATATATGTGGAAAGTTGACTCATGATCATAGTCTATAGTAAGAAGTCTAATTGTTATGACAAAGCTTACTCCATTTGCTTGCTTAAATTTATTGTCAGGTGGCCATGTTAGTTTCAAATGAAGTTGCAATAGCTTCCCGTCTTGGTGTGGAGGTACAGTTCTCATGATTTTCCTCTAGGGTCTTGTATTTTGCTATCCTATTCAGTTTAGCTGAAGCTTGCTTCTTTCTTTGTGATACTTCAGGTAGCAATTGTTGTTGGAGGTCGTAATTTCTTCTGTGGAGATGCATGGGTAACTGCAACTGGTTTAGAAAGATGTACTGCATACCAAGTTGGGTAAGGTTAATCACTAAAAGTTCAATGTATATTCTATTTATGGTCTTGCAATTTTACTAGAAATCCATCAAAAAGAAAATACATGAAAAAAAATAGATTTAGATAACCATGAATATCCTGATTACAAATGGATGATCCAAGGAAAACATAGAAGTGCTAGTTGAAGTTGGGATGTGGGAAAGAGAGCATCTTGGTGACAGGCCAGGGAAGGCCACAGCAGGGGAGTGAACTTTGACTTGTATGGGATTGGTAGTGCCAATTAGATAGCAACTGCCTCCTCTGGATCATTGGAGTGCAAAGAGGACTAAGACTCATCTCATTTTAAAAAAGAAAATTGGAAATTTGAACTTTTAGGTAGGGCTGTAAATGTGGAGTGAGGTCAGAACCACCAGGAGGTTAAATTGGCACTGTGCTTTGTCTATATTATTTCTTTTCCAACTGGATGTGCTTTGCTGATGGTTTGCATAAGCTTCATCACATCCTTCCTAGAGTTGCACTTCTGACCTTTGTTTTGCAGCATATTGAAATTTGTGCAGTTTTGATTTTATGATGAATAAGTTTATATTGAAATACTTACGACAATGATTTATTTTTGGACAGTTTTACTTGTCAACTTTTGTTATATTTTTTACGTTTTCATCAAAAGCCTAAATGAATTTTTGATGCTTGCACTTTATTGGCATCCCATCTTCATGTATTGCACATGGGTAATATGAGATCAGTGTTTTCATGGCTTCTAGTTCATTAGATTAGATGTTGCACTTATGCTGCCATAAGATCATTTTAATCTTTATGGTTAATATATCTTGGGTTAATTATGTTTCTAGTCCCTATAAAATAGCGACATTGTAAGTTTAGTCCCTACTTAATTTTAATAGCATTTTTAGTCCCTAATTTTGTTTTTCTGCACTGAGTATTAGTCCCTACTCAATTCAAATTTGTTTAATTTATGCTTAAACTCTAAAATTTTTGAACAATTTTTTGCAGACATGTTTAGAACATTACTAAAAGTTCGTCCGCAAAAAATTATCGCAAAATTTGATTTCTACATCCAGATTTTATTACTTTTTATCTTTAACTTTTGTCGTTTTAAAAAATTCATATTTAATTCATTTCATGTCAGAAAATTCTAAATTTTAGTAAACGAACCTTTCATAGTGTTCTAATCTTGTCTCAAAAAAATCGTTCAAAAATTTAAGAGTTTAAGGATAATTAATCAATCTTTGTTTTAGCAGGGACTAAAATTATAAGTAATTTTTTTTTATAGGGACTAAAAATGCTATTAAAATTAAGTAGGGACTAAACTTACAAGGTCGCTATTTTATAGGGACTAGAAACATAATTAACCCATATATCTTCTAAAGTGATTTGTTTTTTTCTTTCTTTCTACATTTTAAAAATATTGACCTGAGTTCTTAAATTTGTCAGCATGATGGCAACTGTGATGAACTCCTTACTGCTTCAATCAACTTTAGAGAAGATGGGTGTTCAGACTCGTGTACAAACTTCAGTTTCAATGCAGGCGTTTGCTGAACCGTACAATAGGCAACGGGCCATCAGGCATCTTGAGAAAGGAAGAGTTGTTATATTTGGTGGCATTGGTTTTGGTGCTGGTAATCCACTTTTCTCAACCGACATATCCGCTGCTCTTCGGGCTTCAGAGGGTATGCTTCTGTCCTTTCTATATAATTTTCTAATACTCTTCCCTCCGCATCATCTATTACTCTTTCCCTCGCATCAACCCACATGGATATTTTTGGCAAGCATAATTAGCGCATGTTATCTGCTCTGCAGTTAATGCTCAGGCTGTCCTCAAAGGTACCAACGTAGATGGTGTATATGACTGCAACTCACGAGACAACAATTTCACTTTCGAGCACATATCCTTCAGGGAGCTAGTGTCTAGAGGTGTCACCTCTATGGATATGTCAGCCCTGACATTCTGCGAGGAAAATGCCATTCCTGGTAAGCAATACTATTGCATCTGGTCTTTTCATGGGGGTGTTTCAGGTTGTGCCGCTTTAGATATTGTTTAATACACAATACAATGCATTGTCATTCTCCATGTTCCTTGCAGTGGATTTCAAATAA
Protein sequence

>MS.gene065293.t1

MASCDDDDDFSLLHDDNNHHHLHQTFAPHHHHNHHSHHHFSTASVQSKHITTSVSAAVADDDGDDTDDYGNPFDDDAGSEKRKDRDRDEICDATTSYGFNNKRSKPVSSGNGGGSAGVGAEYRKDREEWSDTAIVCLLEAYTEKFTQLNRGNLRGRDWEEVASMVSERCENQSKSVEQCKNKVDNLKKRYKLERHRMNNGCISASHWPWFKQMEHIVGNSLPAKFADDDKAIVPASISPRQSKRYGVATSSSGGQVNSLKSKALSNLRWRRVVLKISGSALTGSDTCNIDPKVAMLVSNEVAIASRLGVEVAIVVGGRNFFCGDAWVTATGLERCTAYQVGMMATVMNSLLLQSTLEKMGVQTRVQTSVSMQAFAEPYNRQRAIRHLEKGRVVIFGGIGFGAGNPLFSTDISAALRASEVNAQAVLKGTNVDGVYDCNSRDNNFTFEHISFRELVSRGVTSMDMSALTFCEENAIPVDFK