AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene065295

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene065295.t1 MTR_1g061640 90.316 506 39 5 1 506 1 496 0.0 778
MS.gene065295.t1 MTR_7g103390 55.102 490 165 10 2 488 1 438 3.21e-154 447
MS.gene065295.t1 MTR_2g098080 37.363 455 209 10 42 490 29 413 1.25e-80 258
MS.gene065295.t1 MTR_1g098920 46.250 240 99 6 37 256 24 253 6.62e-58 199
MS.gene065295.t1 MTR_1g098920 48.193 83 43 0 409 491 365 447 1.58e-18 88.6
MS.gene065295.t1 MTR_6g035315 64.789 142 48 2 116 256 106 246 9.67e-53 187
MS.gene065295.t1 MTR_6g035315 52.000 75 36 0 415 489 368 442 7.44e-18 86.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene065295.t1 AT1G76870 51.053 190 80 5 69 255 28 207 4.91e-57 194
MS.gene065295.t1 AT1G76870 51.053 190 80 5 69 255 28 207 4.91e-57 194
MS.gene065295.t1 AT1G76870 51.053 190 80 5 69 255 28 207 4.91e-57 194
MS.gene065295.t1 AT1G21200 48.837 215 85 6 63 255 31 242 5.79e-57 196
MS.gene065295.t1 AT1G21200 43.590 78 44 0 412 489 362 439 3.36e-15 78.2
MS.gene065295.t1 AT1G21200 48.837 215 85 6 63 255 31 242 5.79e-57 196
MS.gene065295.t1 AT1G21200 43.590 78 44 0 412 489 362 439 3.36e-15 78.2
MS.gene065295.t1 AT3G10040 53.704 108 50 0 399 506 322 429 1.44e-31 126

Find 106 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTCTTCAGCTTGAAAATT+TGG 0.110218 1.2:+46916748 None:intergenic
CTAACTTCATCTTTCATCTT+AGG 0.178877 1.2:+46916376 None:intergenic
CTGTTGTTGATGTTTGTTCT+TGG 0.207834 1.2:+46916804 None:intergenic
TCAAGGGCTATGATGGAAAA+AGG 0.210514 1.2:-46916541 MS.gene065295:CDS
AGTTTAATGATTTGAATAAA+AGG 0.261559 1.2:-46916486 MS.gene065295:CDS
GCTGCTGTTGTTGTTGATTA+GGG 0.289637 1.2:+46916950 None:intergenic
TGCTGCTGTTGTTGTTGATT+AGG 0.292829 1.2:+46916949 None:intergenic
GGATTGAGAATGTTGAAAAT+TGG 0.301263 1.2:-46916109 MS.gene065295:CDS
TTTGTTGCTGTTGTTGTTGT+TGG 0.325512 1.2:+46916986 None:intergenic
TCAAGGTTTGTTGGATTCAA+TGG 0.337077 1.2:-46916407 MS.gene065295:CDS
GGTTGTTCAAAGGGTCAAAT+TGG 0.342793 1.2:-46915998 MS.gene065295:CDS
TTGAAAAGCAAAGGCTGAAA+TGG 0.345433 1.2:-46915730 MS.gene065295:CDS
ATCACTCCTTCTGGTTTGCT+TGG 0.349154 1.2:-46917033 MS.gene065295:CDS
TTCCACTTCCACCCTCTACT+TGG 0.350671 1.2:+46916257 None:intergenic
TTGTTCTTGGATGAAGAAAA+TGG 0.352317 1.2:+46916817 None:intergenic
GAGAATGGTGTAGGGAGTTT+AGG 0.360554 1.2:-46916148 MS.gene065295:CDS
GCTCTGGTGGTGATCCAAAA+AGG 0.376950 1.2:-46916726 MS.gene065295:CDS
CAGTTGGAGGAACAGAAAAT+AGG 0.378255 1.2:-46915776 MS.gene065295:CDS
GTTGTTGTTGTTGGTGTAAA+GGG 0.379881 1.2:+46916995 None:intergenic
GATGAAGATGAATCAGTAGA+AGG 0.394572 1.2:-46916019 MS.gene065295:CDS
AATGGTAAGGCTATTGATAA+TGG 0.397789 1.2:-46916665 MS.gene065295:CDS
TGTGTCAGTGTCATGATGTT+GGG 0.401350 1.2:+46916882 None:intergenic
GTTGTTGCTGATGCTGCTGC+TGG 0.403571 1.2:+46916188 None:intergenic
TAGTGGTTTGTTACAGAAGA+AGG 0.405258 1.2:-46916581 MS.gene065295:CDS
AAGATTAGAAAATGAGAGAA+TGG 0.405714 1.2:-46915645 MS.gene065295:CDS
CTAAGATGAAAGATGAAGTT+AGG 0.406494 1.2:-46916375 MS.gene065295:CDS
TAGCAAGAAAGAGAGGGAAA+TGG 0.407922 1.2:-46915696 MS.gene065295:CDS
ATCTGTTTCAAGGGCTATGA+TGG 0.408066 1.2:-46916548 MS.gene065295:CDS
AAGATGGAGGGAAGAGTCCT+TGG 0.426883 1.2:-46915832 MS.gene065295:CDS
ATCATCATCATCAACACAAT+TGG 0.442088 1.2:-46915891 MS.gene065295:CDS
CACCATGGCAAAGAATGAAA+TGG 0.442437 1.2:-46916696 MS.gene065295:CDS
GAAAGTGGAAATCTGTTTCA+AGG 0.446222 1.2:-46916558 MS.gene065295:CDS
TGTAGAGTTGTTGAGAATCA+AGG 0.448501 1.2:-46916424 MS.gene065295:CDS
TGTTGAGAATCAAGGTTTGT+TGG 0.449421 1.2:-46916416 MS.gene065295:CDS
AAAAGCAATGGATAAGGAAC+AGG 0.459093 1.2:-46915805 MS.gene065295:CDS
TGCTGTTGATGCTGCTGTTG+AGG 0.459719 1.2:+46916214 None:intergenic
GGAAACCCTTGTTTCATTGA+AGG 0.462754 1.2:+46916841 None:intergenic
TTAGGTGGTTCAAGAGGAGA+GGG 0.465572 1.2:-46916130 MS.gene065295:CDS
TCTTGAATGATGGAAGCTAA+TGG 0.466883 1.2:-46917069 None:intergenic
TGTTGTTGTTGTTGGTGTAA+AGG 0.473088 1.2:+46916994 None:intergenic
TGAAAAGCAAAGGCTGAAAT+GGG 0.476806 1.2:-46915729 MS.gene065295:CDS
CACCAAGTAGAGGGTGGAAG+TGG 0.477622 1.2:-46916259 MS.gene065295:CDS
GTCCATTTCATTCTTTGCCA+TGG 0.478175 1.2:+46916694 None:intergenic
TCAGTAGAAGGTTGTTCAAA+GGG 0.488526 1.2:-46916007 MS.gene065295:CDS
CATTCATCAGAGAATGGTGT+AGG 0.490758 1.2:-46916157 MS.gene065295:CDS
AGTGGTGTGTTTCAAGATGG+AGG 0.493576 1.2:-46915845 MS.gene065295:CDS
TTTCAAGCTGAAGAAAGCTC+TGG 0.499001 1.2:-46916742 MS.gene065295:CDS
GAGCTAAACTTGAGAATGAA+AGG 0.504094 1.2:-46915670 MS.gene065295:CDS
CAAGATGAAGAAGAGAATGA+TGG 0.507615 1.2:-46915962 MS.gene065295:CDS
AGAGGATGATGAAGATGAAG+AGG 0.511662 1.2:-46916068 MS.gene065295:CDS
GGGAGTTTAGGTGGTTCAAG+AGG 0.515573 1.2:-46916136 MS.gene065295:CDS
AGTTGTGGTCATGGTGCTGT+TGG 0.518931 1.2:-46916298 MS.gene065295:CDS
TGTGGTCATGGTGCTGTTGG+TGG 0.519093 1.2:-46916295 MS.gene065295:CDS
TATTACATTGGTGATGAAGC+TGG 0.519299 1.2:-46916637 MS.gene065295:CDS
TTTAGGTGGTTCAAGAGGAG+AGG 0.519481 1.2:-46916131 MS.gene065295:CDS
GTGTGTCAGTGTCATGATGT+TGG 0.523565 1.2:+46916881 None:intergenic
TGTTACAGAAGAAGGGAAAG+TGG 0.523730 1.2:-46916573 MS.gene065295:CDS
TCAAGGAAAAGAGCAAGAAA+AGG 0.523804 1.2:-46915932 MS.gene065295:CDS
AGAATGTTGAAAATTGGAAG+TGG 0.527059 1.2:-46916103 MS.gene065295:CDS
GTGAATGATATACTTGGTAA+AGG 0.529083 1.2:-46916454 MS.gene065295:CDS
TGCTGTTGAGGTTGATTCTG+AGG 0.531228 1.2:+46916226 None:intergenic
AATGAAATGGACTGATACAA+TGG 0.534079 1.2:-46916683 MS.gene065295:CDS
CATCATCCTTCAATGAAACA+AGG 0.534666 1.2:-46916847 MS.gene065295:CDS
GGTATAGTAGCAAGAAAGAG+AGG 0.534687 1.2:-46915703 MS.gene065295:CDS
AACTTATCTTCACATTGTTG+AGG 0.538324 1.2:+46916505 None:intergenic
ATAATGGCTGTTTATTACAT+TGG 0.545685 1.2:-46916649 MS.gene065295:CDS
AGATGGAGGGAAGAGTCCTT+GGG 0.547861 1.2:-46915831 MS.gene065295:CDS
AAGGAACAGGATAATGCAGT+TGG 0.551721 1.2:-46915792 MS.gene065295:CDS
CAAATGAACAATGAAATAAG+TGG 0.554110 1.2:-46915863 MS.gene065295:CDS
ATCAGTAGAAGGTTGTTCAA+AGG 0.555939 1.2:-46916008 MS.gene065295:CDS
AAGTGGAGATGTTGAAGAAG+AGG 0.561038 1.2:-46916086 MS.gene065295:CDS
AATGGTGTAGGGAGTTTAGG+TGG 0.562268 1.2:-46916145 MS.gene065295:CDS
AGTGGTTTGTTACAGAAGAA+GGG 0.564371 1.2:-46916580 MS.gene065295:CDS
GAACAGGATAATGCAGTTGG+AGG 0.568779 1.2:-46915789 MS.gene065295:CDS
CATTTCAGCTTGAAAAGCAA+AGG 0.569983 1.2:-46915739 MS.gene065295:CDS
AGATGAAGAGGATGAGTCAG+AGG 0.572374 1.2:-46916056 MS.gene065295:CDS
TATCATAATAGTTGTGGTCA+TGG 0.573317 1.2:-46916307 MS.gene065295:CDS
GTGGTGTGTTTCAAGATGGA+GGG 0.573587 1.2:-46915844 MS.gene065295:CDS
CAAGCTGAAGAAAGCTCTGG+TGG 0.575821 1.2:-46916739 MS.gene065295:CDS
GGGGAGCATAGGAAACAACT+TGG 0.576375 1.2:+46916902 None:intergenic
GGTGATGAAGCTGGTTCTGA+AGG 0.576679 1.2:-46916628 MS.gene065295:CDS
GTCATGATGTTGGGGAGCAT+AGG 0.579377 1.2:+46916891 None:intergenic
TCTAACAAATTTCATCTAGG+TGG 0.592393 1.2:+46915550 None:intergenic
AAGAGAGTGAATGATATACT+TGG 0.593533 1.2:-46916460 MS.gene065295:CDS
AGGAAAAGAGCAAGAAAAGG+AGG 0.594032 1.2:-46915929 MS.gene065295:CDS
AAAGTGGAAATCTGTTTCAA+GGG 0.595878 1.2:-46916557 MS.gene065295:CDS
ATTCATCAGAGAATGGTGTA+GGG 0.597498 1.2:-46916156 MS.gene065295:CDS
CATAGGAAACAACTTGGGAA+TGG 0.599175 1.2:+46916908 None:intergenic
AGAATGATGGAAAATCATCA+AGG 0.600165 1.2:-46915949 MS.gene065295:CDS
AATGGACTGATACAATGGTA+AGG 0.602489 1.2:-46916678 MS.gene065295:CDS
ATCATCCTTCAATGAAACAA+GGG 0.603780 1.2:-46916846 MS.gene065295:CDS
AAGCAAACCAGAAGGAGTGA+TGG 0.609550 1.2:+46917035 None:intergenic
AGCAAAGGCTGAAATGGGCA+AGG 0.613121 1.2:-46915724 MS.gene065295:CDS
GTGTCAGTGTCATGATGTTG+GGG 0.613275 1.2:+46916883 None:intergenic
TGTTGAGGTTGATTCTGAGG+TGG 0.615009 1.2:+46916229 None:intergenic
CAAACCAGAAGGAGTGATGG+TGG 0.617915 1.2:+46917038 None:intergenic
TAATGTTCAACACCAAGTAG+AGG 0.621278 1.2:-46916269 MS.gene065295:CDS
GTATAGTAGCAAGAAAGAGA+GGG 0.621792 1.2:-46915702 MS.gene065295:CDS
AATGTTCAACACCAAGTAGA+GGG 0.626977 1.2:-46916268 MS.gene065295:CDS
ATAAGTGGTGTGTTTCAAGA+TGG 0.626979 1.2:-46915848 MS.gene065295:CDS
TTCTTGGATGAAGAAAATGG+AGG 0.641684 1.2:+46916820 None:intergenic
GTGATGAAGCTGGTTCTGAA+GGG 0.647076 1.2:-46916627 MS.gene065295:CDS
TGTGCTTATCATAATAGTTG+TGG 0.648505 1.2:-46916313 MS.gene065295:CDS
GTTCAACACCAAGTAGAGGG+TGG 0.655493 1.2:-46916265 MS.gene065295:CDS
GGGAGCATAGGAAACAACTT+GGG 0.683513 1.2:+46916903 None:intergenic
ACTACTCCAAGCAAACCAGA+AGG 0.691367 1.2:+46917027 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTTTAATGATTTGAATAAA+AGG - chr1.2:46916142-46916161 MS.gene065295:CDS 15.0%
! AAGATTAGAAAATGAGAGAA+TGG - chr1.2:46916983-46917002 MS.gene065295:CDS 25.0%
! ATAATGGCTGTTTATTACAT+TGG - chr1.2:46915979-46915998 MS.gene065295:CDS 25.0%
! CAAATGAACAATGAAATAAG+TGG - chr1.2:46916765-46916784 MS.gene065295:CDS 25.0%
!! ATTCTAAGCATCTTTTCTTT+AGG - chr1.2:46916286-46916305 MS.gene065295:CDS 25.0%
!! TTCTAAGCATCTTTTCTTTA+GGG - chr1.2:46916287-46916306 MS.gene065295:CDS 25.0%
AAAGTGGAAATCTGTTTCAA+GGG - chr1.2:46916071-46916090 MS.gene065295:CDS 30.0%
AACTTATCTTCACATTGTTG+AGG + chr1.2:46916126-46916145 None:intergenic 30.0%
AAGAGAGTGAATGATATACT+TGG - chr1.2:46916168-46916187 MS.gene065295:CDS 30.0%
AATGGTAAGGCTATTGATAA+TGG - chr1.2:46915963-46915982 MS.gene065295:CDS 30.0%
AGAATGTTGAAAATTGGAAG+TGG - chr1.2:46916525-46916544 MS.gene065295:CDS 30.0%
ATCATCATCATCAACACAAT+TGG - chr1.2:46916737-46916756 MS.gene065295:CDS 30.0%
ATCATCCTTCAATGAAACAA+GGG - chr1.2:46915782-46915801 MS.gene065295:CDS 30.0%
CCAAATAAGAAAAAGTCTAG+TGG - chr1.2:46916030-46916049 MS.gene065295:CDS 30.0%
CTAACTTCATCTTTCATCTT+AGG + chr1.2:46916255-46916274 None:intergenic 30.0%
CTAAGATGAAAGATGAAGTT+AGG - chr1.2:46916253-46916272 MS.gene065295:CDS 30.0%
CTTTCTTCAGCTTGAAAATT+TGG + chr1.2:46915883-46915902 None:intergenic 30.0%
GGATTGAGAATGTTGAAAAT+TGG - chr1.2:46916519-46916538 MS.gene065295:CDS 30.0%
GTGAATGATATACTTGGTAA+AGG - chr1.2:46916174-46916193 MS.gene065295:CDS 30.0%
TATCATAATAGTTGTGGTCA+TGG - chr1.2:46916321-46916340 MS.gene065295:CDS 30.0%
TGTGCTTATCATAATAGTTG+TGG - chr1.2:46916315-46916334 MS.gene065295:CDS 30.0%
TTGTTCTTGGATGAAGAAAA+TGG + chr1.2:46915814-46915833 None:intergenic 30.0%
! AGAATGATGGAAAATCATCA+AGG - chr1.2:46916679-46916698 MS.gene065295:CDS 30.0%
! GGTTTTGCTTATTAGGAAAA+AGG - chr1.2:46917004-46917023 MS.gene065295:CDS 30.0%
! TGTTTTCATTCATCAGAGAA+TGG - chr1.2:46916465-46916484 MS.gene065295:CDS 30.0%
!! AATGAAATGGACTGATACAA+TGG - chr1.2:46915945-46915964 MS.gene065295:CDS 30.0%
!! AGAGAATGGTTTTGCTTATT+AGG - chr1.2:46916997-46917016 MS.gene065295:CDS 30.0%
!! CCACTAGACTTTTTCTTATT+TGG + chr1.2:46916033-46916052 None:intergenic 30.0%
AAAAGCAATGGATAAGGAAC+AGG - chr1.2:46916823-46916842 MS.gene065295:CDS 35.0%
AATGTTCAACACCAAGTAGA+GGG - chr1.2:46916360-46916379 MS.gene065295:CDS 35.0%
ATAAGTGGTGTGTTTCAAGA+TGG - chr1.2:46916780-46916799 MS.gene065295:CDS 35.0%
ATCAGTAGAAGGTTGTTCAA+AGG - chr1.2:46916620-46916639 MS.gene065295:CDS 35.0%
ATTCATCAGAGAATGGTGTA+GGG - chr1.2:46916472-46916491 MS.gene065295:CDS 35.0%
CAAAAAGGAAGATTTCACCA+TGG - chr1.2:46915917-46915936 MS.gene065295:CDS 35.0%
CAAGATGAAGAAGAGAATGA+TGG - chr1.2:46916666-46916685 MS.gene065295:CDS 35.0%
CATCATCCTTCAATGAAACA+AGG - chr1.2:46915781-46915800 MS.gene065295:CDS 35.0%
CATTTCAGCTTGAAAAGCAA+AGG - chr1.2:46916889-46916908 MS.gene065295:CDS 35.0%
CTGTTGTTGATGTTTGTTCT+TGG + chr1.2:46915827-46915846 None:intergenic 35.0%
GAAAGTGGAAATCTGTTTCA+AGG - chr1.2:46916070-46916089 MS.gene065295:CDS 35.0%
GAGCTAAACTTGAGAATGAA+AGG - chr1.2:46916958-46916977 MS.gene065295:CDS 35.0%
GATGAAGATGAATCAGTAGA+AGG - chr1.2:46916609-46916628 MS.gene065295:CDS 35.0%
GTATAGTAGCAAGAAAGAGA+GGG - chr1.2:46916926-46916945 MS.gene065295:CDS 35.0%
TAATGTTCAACACCAAGTAG+AGG - chr1.2:46916359-46916378 MS.gene065295:CDS 35.0%
TCAAGGAAAAGAGCAAGAAA+AGG - chr1.2:46916696-46916715 MS.gene065295:CDS 35.0%
TCAGTAGAAGGTTGTTCAAA+GGG - chr1.2:46916621-46916640 MS.gene065295:CDS 35.0%
TGAAAAGCAAAGGCTGAAAT+GGG - chr1.2:46916899-46916918 MS.gene065295:CDS 35.0%
TGTAGAGTTGTTGAGAATCA+AGG - chr1.2:46916204-46916223 MS.gene065295:CDS 35.0%
TGTTGAGAATCAAGGTTTGT+TGG - chr1.2:46916212-46916231 MS.gene065295:CDS 35.0%
TTCTTGGATGAAGAAAATGG+AGG + chr1.2:46915811-46915830 None:intergenic 35.0%
TTGAAAAGCAAAGGCTGAAA+TGG - chr1.2:46916898-46916917 MS.gene065295:CDS 35.0%
! CATGGTGAAATCTTCCTTTT+TGG + chr1.2:46915919-46915938 None:intergenic 35.0%
! GTTGTTGTTGTTGGTGTAAA+GGG + chr1.2:46915636-46915655 None:intergenic 35.0%
! TGTTGTTGTTGTTGGTGTAA+AGG + chr1.2:46915637-46915656 None:intergenic 35.0%
! TTTGTTGCTGTTGTTGTTGT+TGG + chr1.2:46915645-46915664 None:intergenic 35.0%
!! AATGGACTGATACAATGGTA+AGG - chr1.2:46915950-46915969 MS.gene065295:CDS 35.0%
!! AGTGGTTTGTTACAGAAGAA+GGG - chr1.2:46916048-46916067 MS.gene065295:CDS 35.0%
!! TAGTGGTTTGTTACAGAAGA+AGG - chr1.2:46916047-46916066 MS.gene065295:CDS 35.0%
!! TATTACATTGGTGATGAAGC+TGG - chr1.2:46915991-46916010 MS.gene065295:CDS 35.0%
!! TCAAGGTTTGTTGGATTCAA+TGG - chr1.2:46916221-46916240 MS.gene065295:CDS 35.0%
AAGGAACAGGATAATGCAGT+TGG - chr1.2:46916836-46916855 MS.gene065295:CDS 40.0%
AAGTGGAGATGTTGAAGAAG+AGG - chr1.2:46916542-46916561 MS.gene065295:CDS 40.0%
AGAGGATGATGAAGATGAAG+AGG - chr1.2:46916560-46916579 MS.gene065295:CDS 40.0%
AGGAAAAGAGCAAGAAAAGG+AGG - chr1.2:46916699-46916718 MS.gene065295:CDS 40.0%
ATCTGTTTCAAGGGCTATGA+TGG - chr1.2:46916080-46916099 MS.gene065295:CDS 40.0%
CACCATGGCAAAGAATGAAA+TGG - chr1.2:46915932-46915951 MS.gene065295:CDS 40.0%
CAGTTGGAGGAACAGAAAAT+AGG - chr1.2:46916852-46916871 MS.gene065295:CDS 40.0%
CATAGGAAACAACTTGGGAA+TGG + chr1.2:46915723-46915742 None:intergenic 40.0%
CATTCATCAGAGAATGGTGT+AGG - chr1.2:46916471-46916490 MS.gene065295:CDS 40.0%
GGGAGAAAAAGCAATGGATA+AGG - chr1.2:46916817-46916836 MS.gene065295:CDS 40.0%
GGTATAGTAGCAAGAAAGAG+AGG - chr1.2:46916925-46916944 MS.gene065295:CDS 40.0%
GGTTGTTCAAAGGGTCAAAT+TGG - chr1.2:46916630-46916649 MS.gene065295:CDS 40.0%
GTCCATTTCATTCTTTGCCA+TGG + chr1.2:46915937-46915956 None:intergenic 40.0%
TAGCAAGAAAGAGAGGGAAA+TGG - chr1.2:46916932-46916951 MS.gene065295:CDS 40.0%
TGTGTCAGTGTCATGATGTT+GGG + chr1.2:46915749-46915768 None:intergenic 40.0%
TGTTACAGAAGAAGGGAAAG+TGG - chr1.2:46916055-46916074 MS.gene065295:CDS 40.0%
TTTCAAGCTGAAGAAAGCTC+TGG - chr1.2:46915886-46915905 MS.gene065295:CDS 40.0%
! CAAGGGCTATGATGGAAAAA+GGG - chr1.2:46916088-46916107 MS.gene065295:CDS 40.0%
! GCTGCTGTTGTTGTTGATTA+GGG + chr1.2:46915681-46915700 None:intergenic 40.0%
! GGAAACCCTTGTTTCATTGA+AGG + chr1.2:46915790-46915809 None:intergenic 40.0%
! TCAAGGGCTATGATGGAAAA+AGG - chr1.2:46916087-46916106 MS.gene065295:CDS 40.0%
! TGCTGCTGTTGTTGTTGATT+AGG + chr1.2:46915682-46915701 None:intergenic 40.0%
!!! ATCCATTGCTTTTTCTCCCA+AGG + chr1.2:46916816-46916835 None:intergenic 40.0%
AAGCAAACCAGAAGGAGTGA+TGG + chr1.2:46915596-46915615 None:intergenic 45.0%
AATGGTGTAGGGAGTTTAGG+TGG - chr1.2:46916483-46916502 MS.gene065295:CDS 45.0%
ACTACTCCAAGCAAACCAGA+AGG + chr1.2:46915604-46915623 None:intergenic 45.0%
AGATGAAGAGGATGAGTCAG+AGG - chr1.2:46916572-46916591 MS.gene065295:CDS 45.0%
AGTGGTGTGTTTCAAGATGG+AGG - chr1.2:46916783-46916802 MS.gene065295:CDS 45.0%
GAACAGGATAATGCAGTTGG+AGG - chr1.2:46916839-46916858 MS.gene065295:CDS 45.0%
GAGAATGGTGTAGGGAGTTT+AGG - chr1.2:46916480-46916499 MS.gene065295:CDS 45.0%
GTCCTTGGGAGAAAAAGCAA+TGG - chr1.2:46916811-46916830 MS.gene065295:CDS 45.0%
GTGGTGTGTTTCAAGATGGA+GGG - chr1.2:46916784-46916803 MS.gene065295:CDS 45.0%
GTGTCAGTGTCATGATGTTG+GGG + chr1.2:46915748-46915767 None:intergenic 45.0%
GTGTGTCAGTGTCATGATGT+TGG + chr1.2:46915750-46915769 None:intergenic 45.0%
TTAGGTGGTTCAAGAGGAGA+GGG - chr1.2:46916498-46916517 MS.gene065295:CDS 45.0%
TTTAGGTGGTTCAAGAGGAG+AGG - chr1.2:46916497-46916516 MS.gene065295:CDS 45.0%
! GGGAGCATAGGAAACAACTT+GGG + chr1.2:46915728-46915747 None:intergenic 45.0%
! TGCTGTTGAGGTTGATTCTG+AGG + chr1.2:46916405-46916424 None:intergenic 45.0%
! TGTTGAGGTTGATTCTGAGG+TGG + chr1.2:46916402-46916421 None:intergenic 45.0%
! TTTTCCACCATCACTCCTTC+TGG - chr1.2:46915586-46915605 MS.gene065295:CDS 45.0%
!! ATCACTCCTTCTGGTTTGCT+TGG - chr1.2:46915595-46915614 MS.gene065295:CDS 45.0%
!! GTGATGAAGCTGGTTCTGAA+GGG - chr1.2:46916001-46916020 MS.gene065295:CDS 45.0%
AAGATGGAGGGAAGAGTCCT+TGG - chr1.2:46916796-46916815 MS.gene065295:CDS 50.0%
AGATGGAGGGAAGAGTCCTT+GGG - chr1.2:46916797-46916816 MS.gene065295:CDS 50.0%
AGCAAAGGCTGAAATGGGCA+AGG - chr1.2:46916904-46916923 MS.gene065295:CDS 50.0%
CAAACCAGAAGGAGTGATGG+TGG + chr1.2:46915593-46915612 None:intergenic 50.0%
GGGAGTTTAGGTGGTTCAAG+AGG - chr1.2:46916492-46916511 MS.gene065295:CDS 50.0%
GTTCAACACCAAGTAGAGGG+TGG - chr1.2:46916363-46916382 MS.gene065295:CDS 50.0%
TGCTGTTGATGCTGCTGTTG+AGG + chr1.2:46916417-46916436 None:intergenic 50.0%
TTCCACTTCCACCCTCTACT+TGG + chr1.2:46916374-46916393 None:intergenic 50.0%
! CAAGCTGAAGAAAGCTCTGG+TGG - chr1.2:46915889-46915908 MS.gene065295:CDS 50.0%
! GCTCTGGTGGTGATCCAAAA+AGG - chr1.2:46915902-46915921 MS.gene065295:CDS 50.0%
! GGGGAGCATAGGAAACAACT+TGG + chr1.2:46915729-46915748 None:intergenic 50.0%
! GTCATGATGTTGGGGAGCAT+AGG + chr1.2:46915740-46915759 None:intergenic 50.0%
!! AGTTGTGGTCATGGTGCTGT+TGG - chr1.2:46916330-46916349 MS.gene065295:CDS 50.0%
!! GGTGATGAAGCTGGTTCTGA+AGG - chr1.2:46916000-46916019 MS.gene065295:CDS 50.0%
CACCAAGTAGAGGGTGGAAG+TGG - chr1.2:46916369-46916388 MS.gene065295:CDS 55.0%
GTTGTTGCTGATGCTGCTGC+TGG + chr1.2:46916443-46916462 None:intergenic 55.0%
!! TGTGGTCATGGTGCTGTTGG+TGG - chr1.2:46916333-46916352 MS.gene065295:CDS 55.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 46915565 46917085 46915565 ID=MS.gene065295
chr1.2 mRNA 46915565 46917085 46915565 ID=MS.gene065295.t1;Parent=MS.gene065295
chr1.2 exon 46915565 46917085 46915565 ID=MS.gene065295.t1.exon1;Parent=MS.gene065295.t1
chr1.2 CDS 46915565 46917085 46915565 ID=cds.MS.gene065295.t1;Parent=MS.gene065295.t1
Gene Sequence

>MS.gene065295

ATGATGGAAGCTAATGGCATGTTTTCCACCATCACTCCTTCTGGTTTGCTTGGAGTAGTTGATAATATCCCTTTACACCAACAACAACAACAGCAACAAAAACAACAGAATCTCCCTAATCAACAACAACAGCAGCAAAATTCTCATCATTTGCACCATTCCCAAGTTGTTTCCTATGCTCCCCAACATCATGACACTGACACACATCAACAACAACATCATCCTTCAATGAAACAAGGGTTTCCTCCATTTTCTTCATCCAAGAACAAACATCAACAACAGCAACAAAGTTCTCAGATGAGTGATGAAGATGAACCAAATTTTCAAGCTGAAGAAAGCTCTGGTGGTGATCCAAAAAGGAAGATTTCACCATGGCAAAGAATGAAATGGACTGATACAATGGTAAGGCTATTGATAATGGCTGTTTATTACATTGGTGATGAAGCTGGTTCTGAAGGGACTGATCCAAATAAGAAAAAGTCTAGTGGTTTGTTACAGAAGAAGGGAAAGTGGAAATCTGTTTCAAGGGCTATGATGGAAAAAGGGTTTTATGTGTCACCTCAACAATGTGAAGATAAGTTTAATGATTTGAATAAAAGGTATAAGAGAGTGAATGATATACTTGGTAAAGGAACAGCTTGTAGAGTTGTTGAGAATCAAGGTTTGTTGGATTCAATGGATTTGTCACCTAAGATGAAAGATGAAGTTAGGAAATTGCTTAATTCTAAGCATCTTTTCTTTAGGGAAATGTGTGCTTATCATAATAGTTGTGGTCATGGTGCTGTTGGTGGTTCTAATGTTCAACACCAAGTAGAGGGTGGAAGTGGAACAACACCACCTCAGAATCAACCTCAACAGCAGCATCAACAGCAGCACCAGCAGCAGCATCAGCAACAACATTGTTTTCATTCATCAGAGAATGGTGTAGGGAGTTTAGGTGGTTCAAGAGGAGAGGGATTGAGAATGTTGAAAATTGGAAGTGGAGATGTTGAAGAAGAGGATGATGAAGATGAAGAGGATGAGTCAGAGGACTTTTCTGATGAAGATGAAGATGAATCAGTAGAAGGTTGTTCAAAGGGTCAAATTGGTCATATAAATGATCAAGATGAAGAAGAGAATGATGGAAAATCATCAAGGAAAAGAGCAAGAAAAGGAGGATTTTCATTTTCAAGATCATCATCATCAACACAATTGGTGAATCAAATGAACAATGAAATAAGTGGTGTGTTTCAAGATGGAGGGAAGAGTCCTTGGGAGAAAAAGCAATGGATAAGGAACAGGATAATGCAGTTGGAGGAACAGAAAATAGGATATGAATCACAAGCATTTCAGCTTGAAAAGCAAAGGCTGAAATGGGCAAGGTATAGTAGCAAGAAAGAGAGGGAAATGGAAAGAGCTAAACTTGAGAATGAAAGGAGAAGATTAGAAAATGAGAGAATGGTTTTGCTTATTAGGAAAAAGGAGATTGAGTTGATGCATATTCAACAACAGCAGCAGCAGCAGCAACACTCTTCCACCTAG
Protein sequence

>MS.gene065295.t1

MMEANGMFSTITPSGLLGVVDNIPLHQQQQQQQKQQNLPNQQQQQQNSHHLHHSQVVSYAPQHHDTDTHQQQHHPSMKQGFPPFSSSKNKHQQQQQSSQMSDEDEPNFQAEESSGGDPKRKISPWQRMKWTDTMVRLLIMAVYYIGDEAGSEGTDPNKKKSSGLLQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTACRVVENQGLLDSMDLSPKMKDEVRKLLNSKHLFFREMCAYHNSCGHGAVGGSNVQHQVEGGSGTTPPQNQPQQQHQQQHQQQHQQQHCFHSSENGVGSLGGSRGEGLRMLKIGSGDVEEEDDEDEEDESEDFSDEDEDESVEGCSKGQIGHINDQDEEENDGKSSRKRARKGGFSFSRSSSSTQLVNQMNNEISGVFQDGGKSPWEKKQWIRNRIMQLEEQKIGYESQAFQLEKQRLKWARYSSKKEREMERAKLENERRRLENERMVLLIRKKEIELMHIQQQQQQQQHSST