AlfalfaGEDB | MS.gene065296

M. sativa cultivar XinJiangDaYe / MS.gene065296

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00046.32 PF02183.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065296.t1	XP_003590399.1	96.6	233	7	1	1	233	1	232	2.50E-123	451.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065296.t1	Q9LZR0	49.2	195	81	5	1	178	1	194	7.0e-34	145.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065296.t1	G7I9C4	96.6	233	7	1	1	233	1	232	1.8e-123	451.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene065296.t1	TF	HB-HD-ZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065296.t1	MTR_1g061660	96.567	233	7	1	1	233	1	232	3.38e-170	468
MS.gene065296.t1	MTR_7g103340	56.735	245	81	10	1	233	1	232	5.30e-79	237
MS.gene065296.t1	MTR_6g007647	55.882	102	38	1	59	153	32	133	7.60e-30	112
MS.gene065296.t1	MTR_6g007647	55.882	102	38	1	59	153	66	167	1.10e-29	112
MS.gene065296.t1	MTR_4g107650	46.575	146	63	4	49	180	84	228	1.84e-29	112
MS.gene065296.t1	MTR_8g468210	55.670	97	36	1	57	146	74	170	7.15e-28	107
MS.gene065296.t1	MTR_6g011610	54.639	97	44	0	54	150	71	167	1.16e-27	106
MS.gene065296.t1	MTR_6g011610	54.639	97	44	0	54	150	90	186	1.19e-27	106
MS.gene065296.t1	MTR_3g086790	38.202	178	88	5	55	221	55	221	7.01e-27	105
MS.gene065296.t1	MTR_5g038280	54.128	109	39	2	58	155	85	193	2.05e-26	104

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065296.t1	AT5G03790	50.256	195	79	6	1	178	1	194	1.57e-48	159
MS.gene065296.t1	AT5G03790	53.704	162	58	5	1	145	1	162	1.98e-42	142
MS.gene065296.t1	AT2G36610	48.603	179	66	7	7	162	5	180	1.20e-40	138
MS.gene065296.t1	AT4G40060	42.405	158	80	3	29	177	30	185	1.27e-31	117
MS.gene065296.t1	AT1G69780	44.000	150	57	3	57	199	82	211	1.25e-29	112
MS.gene065296.t1	AT5G15150	61.290	93	36	0	57	149	112	204	3.17e-29	111
MS.gene065296.t1	AT2G22430	54.455	101	39	1	56	149	58	158	8.70e-29	110
MS.gene065296.t1	AT3G01220	54.128	109	43	1	57	158	84	192	3.47e-28	108
MS.gene065296.t1	AT3G01470	37.647	170	96	3	57	219	65	231	7.99e-28	107
MS.gene065296.t1	AT5G65310	39.869	153	73	5	12	153	28	172	2.64e-27	106

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Find 48 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGAAGCTTCAGGATG+AGG	0.513448	1.2:+46935800	MS.gene065296:CDS
AAACTGTTGTTTCAATTTAG+AGG	0.288321	1.2:+46937153	MS.gene065296:CDS
AAAGAACAAGGTAACTCTTG+TGG	0.599344	1.2:+46936995	MS.gene065296:CDS
AAAGCTTCATCTTCCTTTGA+GGG	0.383872	1.2:-46935647	None:intergenic
AACAGTAGAAAGCACATCAG+AGG	0.578567	1.2:+46937063	MS.gene065296:CDS
AACCAAATAGCAATTTGACG+AGG	0.698239	1.2:-46935690	None:intergenic
AACTCTTGTGGTAGAATGCA+AGG	0.527714	1.2:+46937007	MS.gene065296:CDS
AAGGAAGATGAAGCTTTCCA+AGG	0.615641	1.2:+46935653	MS.gene065296:CDS
AAGGCTATGTTGAAAGAACA+AGG	0.632753	1.2:+46936983	MS.gene065296:CDS
AATTAAGGGTGATAGTTATA+AGG	0.365223	1.2:-46937229	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTATTTGTGTGTGTCTAAA+TGG	+	chr1.2:46936060-46936079	MS.gene065296:intron	30.0%
ATAATCCTCTCAACAAAAAG+AGG	+	chr1.2:46936426-46936445	MS.gene065296:intron	30.0%
ATACGAATAAGTGTATACGT+AGG	+	chr1.2:46936246-46936265	MS.gene065296:intron	30.0%
ATGTCGGACGTATAAATATA+TGG	+	chr1.2:46936338-46936357	MS.gene065296:intron	30.0%
CCCATACACAAATGAAAAAA+AGG	+	chr1.2:46935987-46936006	MS.gene065296:intron	30.0%
CGTATACACTTATTCGTATA+TGG	-	chr1.2:46936245-46936264	None:intergenic	30.0%
GAACAATACCTAAATGGTTA+CGG	+	chr1.2:46935917-46935936	MS.gene065296:intron	30.0%
GACAATGCATAATATATGCA+TGG	+	chr1.2:46936123-46936142	MS.gene065296:intron	30.0%
GTCAATGAACAATACCTAAA+TGG	+	chr1.2:46935911-46935930	MS.gene065296:intron	30.0%
TAGACACAGTTTACCAATAT+GGG	+	chr1.2:46936727-46936746	MS.gene065296:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	46935040	46937249	46935040	ID=MS.gene065296
chr1.2	mRNA	46935040	46937249	46935040	ID=MS.gene065296.t1;Parent=MS.gene065296
chr1.2	exon	46935040	46935130	46935040	ID=MS.gene065296.t1.exon1;Parent=MS.gene065296.t1
chr1.2	CDS	46935040	46935130	46935040	ID=cds.MS.gene065296.t1;Parent=MS.gene065296.t1
chr1.2	exon	46935490	46935821	46935490	ID=MS.gene065296.t1.exon2;Parent=MS.gene065296.t1
chr1.2	CDS	46935490	46935821	46935490	ID=cds.MS.gene065296.t1;Parent=MS.gene065296.t1
chr1.2	exon	46936971	46937249	46936971	ID=MS.gene065296.t1.exon3;Parent=MS.gene065296.t1
chr1.2	CDS	46936971	46937249	46936971	ID=cds.MS.gene065296.t1;Parent=MS.gene065296.t1

Gene Sequence

>MS.gene065296

ATGGAATGGAATGGAAACACAAGAAGCTTTGTTCCTCAACCAGAGTCTTCCTTAAGCTTCCTCTACAACTACAACCAATGCTCATATCAAGGTAAAAATTATCATCACAACACTAGCTACTCTATTGCATTCATCTTTTTATCATCATAACATTGCACCTAATAACTTCTAGAATGTAATTTAGTAACCCTATATTTAAACTTATGATTAAATTTAATATATTTTCTGTCCAACCATGCATATATATAGTTTTTTTCTTCTTCTATATATGGCATATATATAGCTTGGTCAACATTCATTCAAAATTTACGTATGTTTGGCGCGTGCCAGTGTCCAACATGATATCGACACGCGTAACTACATACAATGGCTTTCATTCTCATATATTATTACTGGTGTCTACATATCAGTGTCCTAAACTTCTAAACAATATTGTGTGTGTTTGTTAAGGAATGATGGAAGTGAAACAGCAAGACTGGACAGATACAATGTTCCCAGAAATGGAAAAAATGATGAAGTATGGGAACTTGCAAGAAAAGAAAAAGCGATTAACGAGTCAACAGATGGAATCACTGGAGAGTAGTTTTCAAGAGGAGATCAAACTAGACCCTCAAAGGAAGATGAAGCTTTCCAAGGAGTTAGGGCTACAGCCTCGTCAAATTGCTATTTGGTTCCAAAACAGACGTGCTAGGTGGAAGACCAAGCAACTTGAACACTTGTATGATTCACTTAGACACCAATTTGAGGTTGTGTCTAAGGAAAAACAGAAGCTTCAGGATGAGGTACGTTAACATATGTAAATATGTATACTATATACTATGCATGTATAGTGAATGTTTTATATACTGAAAACAGAAAACATGATAAATATGTCAATGAACAATACCTAAATGGTTACGGCTGTGTTATTTAGATGAGGGACACAAGCGCAAATAATTTTATTTTAGCCCATACACAAATGAAAAAAAGGTAAAACAAAAAACACTTAAATAATATGTTATTTTAAATAATCAAATGGTAAGTATTTGTGTGTGTCTAAATGGATTTTATTTGTGTCCTCGTGAGCTTAGCTCAGTTGGTATGGACAATGCATAATATATGCATGGTACGAGGTTCGAACCCCGACCACCAAAAAAAAATGGATTTCATTTGTGGTTGTATCCATATAAGTATTTCTCTAGTTAAACACACTTTAAACAATACCATATACGAATAAGTGTATACGTAGGATCCAAGAAGAGAAAAATAAATTATCTAAGGTGAGAAAAAAATCAAAAACGTATAAATATATGGTTTTGATGTCGGACGTATAAATATATGGTTTTGATGTCGGGTTTTTATGTAGAAAAAAAATTCTCAAATGGTCAATTTTATTTTTTTTTTGTCATAATCCTCTCAACAAAAAGAGGTTATGGTAGTCCAAATTTCAATGAGAAGATAAGTAAAGTTTGACTAATTTTAACAATGAAGTGTATGTTTTGATTTACGGTGAACTTAATGATATCACGGTTACATTGTAATTTTGTTGAAATTAAAAAATGTAACTAAAATCATGGTTGCACACTGTGAATTGTGATTCTGCAAACTCACCTATACTCGTAAAATTGACTAGTTTTCTCTTATTTATATTATTGGTGTTAAGTAAACTTTCAAAGTGATTGTATGCCTCTCTCCCCTGTCTCTTTTGTAGACACAGTTTACCAATATGGGTGTGTTTATTTTAAAAATCCATAACACTGCAACTTTGTTTCATGATTTTACAAGTAAATCGAAGATACTTTGCTACTTCGATATTTAATACTCCTATTGTCTAAATTAAAATACTGTTTAATTGTTTTTGCTGCTAAAGTTTGAAATAGACACGTGAGTATGTGACATATCCTACAGGTTAAACCATATGCATATTATATATAAAAATTTGTTGTGGCCAGGTTATGAAGTTGAAGGCTATGTTGAAAGAACAAGGTAACTCTTGTGGTAGAATGCAAGGTTACTATACAGAAATGTCAGTGAATGAAACAGAAACAGTAGAAAGCACATCAGAGGCAGCTCTACGTTGCTCCAACAGGGAGGTGAAGGGAAAGATTCATCAACAGTTGAACATTGATGAAGGAAACTGTTGTTTCAATTTAGAGGACTATAACATTAATAACAGTGTTCCACTATTGCCCTACTGGCCTGCTTCTGTACCTTATAACTATCACCCTTAA

Protein sequence

>MS.gene065296.t1

MEWNGNTRSFVPQPESSLSFLYNYNQCSYQGMMEVKQQDWTDTMFPEMEKMMKYGNLQEKKKRLTSQQMESLESSFQEEIKLDPQRKMKLSKELGLQPRQIAIWFQNRRARWKTKQLEHLYDSLRHQFEVVSKEKQKLQDEVMKLKAMLKEQGNSCGRMQGYYTEMSVNETETVESTSEAALRCSNREVKGKIHQQLNIDEGNCCFNLEDYNINNSVPLLPYWPASVPYNYHP