Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06536.t1 | KEH35534.1 | 72.8 | 313 | 49 | 2 | 1 | 277 | 1 | 313 | 6.90E-118 | 434.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06536.t1 | Q9FJK3 | 27.7 | 173 | 123 | 2 | 6 | 177 | 3 | 174 | 3.2e-15 | 84.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06536.t1 | A0A072V0I7 | 72.8 | 313 | 49 | 2 | 1 | 277 | 1 | 313 | 5.0e-118 | 434.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene06536.t1 | TF | MADS-M-type |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06536.t1 | MTR_3g093900 | 76.241 | 564 | 83 | 4 | 1 | 513 | 1 | 564 | 0.0 | 827 |
| MS.gene06536.t1 | MTR_7g106510 | 45.027 | 553 | 208 | 14 | 1 | 513 | 1 | 497 | 3.59e-112 | 342 |
| MS.gene06536.t1 | MTR_4g019670 | 44.624 | 558 | 219 | 14 | 1 | 513 | 1 | 513 | 6.04e-112 | 342 |
| MS.gene06536.t1 | MTR_8g467500 | 43.000 | 300 | 138 | 4 | 13 | 304 | 13 | 287 | 1.61e-55 | 188 |
| MS.gene06536.t1 | MTR_5g075380 | 32.258 | 155 | 105 | 0 | 7 | 161 | 4 | 158 | 6.80e-23 | 95.5 |
| MS.gene06536.t1 | MTR_8g036130 | 34.810 | 158 | 98 | 3 | 4 | 157 | 1 | 157 | 4.53e-21 | 92.8 |
| MS.gene06536.t1 | MTR_4g032620 | 32.450 | 151 | 101 | 1 | 6 | 155 | 3 | 153 | 7.95e-21 | 91.7 |
| MS.gene06536.t1 | MTR_2g016210 | 33.121 | 157 | 100 | 2 | 7 | 160 | 4 | 158 | 1.59e-20 | 91.3 |
| MS.gene06536.t1 | MTR_4g031910 | 32.692 | 156 | 104 | 1 | 6 | 160 | 3 | 158 | 2.89e-19 | 87.4 |
| MS.gene06536.t1 | MTR_3g466980 | 28.289 | 152 | 109 | 0 | 6 | 157 | 3 | 154 | 1.99e-18 | 84.7 |
| MS.gene06536.t1 | MTR_3g065100 | 28.846 | 156 | 111 | 0 | 6 | 161 | 3 | 158 | 1.67e-17 | 82.4 |
| MS.gene06536.t1 | MTR_3g466890 | 32.414 | 145 | 98 | 0 | 6 | 150 | 2 | 146 | 2.08e-17 | 80.1 |
| MS.gene06536.t1 | MTR_2g035610 | 33.333 | 120 | 80 | 0 | 6 | 125 | 3 | 122 | 2.31e-17 | 78.6 |
| MS.gene06536.t1 | MTR_3g466830 | 28.662 | 157 | 112 | 0 | 6 | 162 | 2 | 158 | 8.06e-17 | 78.2 |
| MS.gene06536.t1 | MTR_4g032290 | 31.967 | 122 | 82 | 1 | 37 | 157 | 34 | 155 | 4.89e-16 | 77.8 |
| MS.gene06536.t1 | MTR_4g032260 | 36.458 | 96 | 61 | 0 | 37 | 132 | 34 | 129 | 1.21e-14 | 72.0 |
| MS.gene06536.t1 | MTR_1g090697 | 29.677 | 155 | 108 | 1 | 6 | 160 | 3 | 156 | 1.83e-14 | 71.2 |
| MS.gene06536.t1 | MTR_1g090783 | 26.897 | 145 | 105 | 1 | 6 | 150 | 2 | 145 | 2.39e-14 | 71.2 |
| MS.gene06536.t1 | MTR_1g090710 | 28.289 | 152 | 98 | 2 | 6 | 157 | 3 | 143 | 1.57e-13 | 68.9 |
| MS.gene06536.t1 | MTR_3g466900 | 29.365 | 126 | 89 | 0 | 35 | 160 | 2 | 127 | 3.55e-13 | 67.0 |
| MS.gene06536.t1 | MTR_3g031100 | 24.837 | 153 | 114 | 1 | 6 | 157 | 3 | 155 | 5.02e-13 | 69.3 |
| MS.gene06536.t1 | MTR_4g028800 | 40.000 | 70 | 40 | 1 | 7 | 76 | 4 | 71 | 6.30e-13 | 64.3 |
| MS.gene06536.t1 | MTR_4g063790 | 31.313 | 99 | 68 | 0 | 8 | 106 | 5 | 103 | 2.62e-12 | 65.5 |
| MS.gene06536.t1 | MTR_3g466930 | 31.034 | 116 | 80 | 0 | 35 | 150 | 2 | 117 | 1.72e-11 | 62.0 |
| MS.gene06536.t1 | MTR_5g047580 | 29.703 | 101 | 70 | 1 | 6 | 106 | 3 | 102 | 2.11e-11 | 62.8 |
| MS.gene06536.t1 | MTR_7g055800 | 31.731 | 104 | 53 | 3 | 18 | 118 | 2 | 90 | 3.68e-11 | 60.1 |
| MS.gene06536.t1 | MTR_3g031240 | 22.876 | 153 | 117 | 1 | 6 | 157 | 3 | 155 | 5.00e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06536.t1 | AT5G27960 | 33.094 | 139 | 85 | 1 | 7 | 137 | 2 | 140 | 2.74e-19 | 89.4 |
| MS.gene06536.t1 | AT5G26650 | 31.655 | 139 | 87 | 1 | 7 | 137 | 2 | 140 | 5.09e-19 | 89.4 |
| MS.gene06536.t1 | AT1G65300 | 31.613 | 155 | 97 | 2 | 6 | 152 | 2 | 155 | 1.66e-18 | 86.3 |
| MS.gene06536.t1 | AT2G40210 | 29.825 | 171 | 117 | 2 | 4 | 174 | 1 | 168 | 9.58e-18 | 85.5 |
| MS.gene06536.t1 | AT5G48670 | 29.677 | 155 | 107 | 2 | 6 | 159 | 3 | 156 | 9.42e-15 | 75.9 |
| MS.gene06536.t1 | AT3G05860 | 27.703 | 148 | 105 | 2 | 4 | 150 | 1 | 147 | 1.52e-14 | 73.9 |
| MS.gene06536.t1 | AT3G05860 | 27.703 | 148 | 105 | 2 | 4 | 150 | 1 | 147 | 1.99e-14 | 73.9 |
| MS.gene06536.t1 | AT2G15660 | 30.657 | 137 | 86 | 3 | 41 | 174 | 31 | 161 | 2.09e-14 | 73.6 |
| MS.gene06536.t1 | AT3G05860 | 34.444 | 90 | 59 | 0 | 6 | 95 | 3 | 92 | 4.63e-14 | 71.6 |
| MS.gene06536.t1 | AT1G31630 | 33.333 | 111 | 73 | 1 | 6 | 116 | 2 | 111 | 1.19e-13 | 72.8 |
| MS.gene06536.t1 | AT2G28700 | 33.594 | 128 | 71 | 3 | 4 | 124 | 1 | 121 | 3.02e-13 | 71.2 |
| MS.gene06536.t1 | AT1G65330 | 27.097 | 155 | 104 | 2 | 8 | 154 | 4 | 157 | 6.19e-13 | 69.7 |
| MS.gene06536.t1 | AT1G22590 | 25.316 | 158 | 109 | 3 | 6 | 160 | 3 | 154 | 3.71e-12 | 65.1 |
| MS.gene06536.t1 | AT5G06500 | 26.667 | 150 | 109 | 1 | 6 | 155 | 3 | 151 | 2.52e-11 | 64.3 |
| MS.gene06536.t1 | AT5G27810 | 29.670 | 91 | 64 | 0 | 34 | 124 | 3 | 93 | 3.39e-11 | 60.8 |
Find 92 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGACAATATGGTAGATTT+TGG | 0.154646 | 3.2:+78749152 | MS.gene06536:CDS |
| ATGCCTCCTCAAGGCGATTT+TGG | 0.215144 | 3.2:+78749546 | MS.gene06536:CDS |
| TTCGTTATATTTGTTGATCT+TGG | 0.266394 | 3.2:-78748922 | None:intergenic |
| TGACCTATTGTTTCGACATT+AGG | 0.272251 | 3.2:-78749864 | None:intergenic |
| GAAAGGATTGTTCACTAAAA+TGG | 0.281180 | 3.2:+78748692 | MS.gene06536:CDS |
| CTGACTTATGTGGAGGAAAA+AGG | 0.299572 | 3.2:+78748876 | MS.gene06536:CDS |
| AATGGAAGCAACTTCAATTA+AGG | 0.312514 | 3.2:+78750215 | MS.gene06536:CDS |
| AAACACAAATATGGTAGATT+TGG | 0.314468 | 3.2:+78749178 | MS.gene06536:CDS |
| GTTATTCCCTAGAGGAAATT+CGG | 0.319248 | 3.2:+78749449 | MS.gene06536:CDS |
| ATTCCTAATGTCGAAACAAT+AGG | 0.349451 | 3.2:+78749861 | MS.gene06536:CDS |
| TGCTTTAGACAATGACAATA+TGG | 0.384922 | 3.2:+78749142 | MS.gene06536:CDS |
| TTCGTAGCCAAAACAACATT+GGG | 0.385715 | 3.2:+78750135 | MS.gene06536:CDS |
| TTATTCCCTAGAGGAAATTC+GGG | 0.398930 | 3.2:+78749450 | MS.gene06536:CDS |
| TAACAACACAGATAGCAAAA+TGG | 0.410915 | 3.2:+78749908 | MS.gene06536:CDS |
| ACAATAGGTCAAGTAAGCTT+TGG | 0.426113 | 3.2:+78749876 | MS.gene06536:CDS |
| CAACGCATCAACATCACTAC+TGG | 0.426637 | 3.2:-78749724 | None:intergenic |
| GGAGGTCAATGCAACTTTGA+AGG | 0.427024 | 3.2:+78749765 | MS.gene06536:CDS |
| TTGATGCTTTGCTTCCTCAA+TGG | 0.441644 | 3.2:+78749964 | MS.gene06536:CDS |
| TTCGTTTAAAATTTGATGCA+TGG | 0.443888 | 3.2:-78748964 | None:intergenic |
| ACTCATTTGATCAGCTTGCT+TGG | 0.447445 | 3.2:-78749201 | None:intergenic |
| GACATCGGCAGTGGCAGAGA+GGG | 0.454249 | 3.2:-78749116 | None:intergenic |
| CTTCCTCAATGGAATTTCAC+AGG | 0.455585 | 3.2:+78749975 | MS.gene06536:CDS |
| CTCCATGTTGCTACCTAGAT+AGG | 0.463692 | 3.2:-78749484 | None:intergenic |
| CCTAGTGGTGGTGGCGGTGT+TGG | 0.464100 | 3.2:+78749236 | MS.gene06536:CDS |
| ATAGGTCAAGTAAGCTTTGG+AGG | 0.477721 | 3.2:+78749879 | MS.gene06536:CDS |
| TTTCATCAAGGCAATGTTGA+AGG | 0.479948 | 3.2:+78750071 | MS.gene06536:CDS |
| TTTCTTGATTGTACTGACTC+TGG | 0.484517 | 3.2:-78748840 | None:intergenic |
| ACAGGTTCTGATAACAATGT+AGG | 0.484981 | 3.2:+78749993 | MS.gene06536:CDS |
| TAAAAGTCATGGTTGAGATC+AGG | 0.485469 | 3.2:+78748601 | None:intergenic |
| GTTGATTTGTTATTTCATCA+AGG | 0.487404 | 3.2:+78750059 | MS.gene06536:CDS |
| TTTCCTCCACATAAGTCAGT+TGG | 0.504777 | 3.2:-78748872 | None:intergenic |
| ATAGAGATGGTGATAATATG+AGG | 0.515278 | 3.2:+78750111 | MS.gene06536:CDS |
| AACATGTCAACACCGCCACT+TGG | 0.520464 | 3.2:-78749837 | None:intergenic |
| TGGCGGTGTTGGTGCTATGT+TGG | 0.535172 | 3.2:+78749247 | MS.gene06536:CDS |
| CATCGGCAGTGGCAGAGAGG+GGG | 0.541750 | 3.2:-78749114 | None:intergenic |
| TCATGGTTGAGATCAGGAAA+AGG | 0.542864 | 3.2:+78748607 | None:intergenic |
| GTAGCGAATCTTTCTTTGAG+TGG | 0.550195 | 3.2:-78748658 | None:intergenic |
| CGCTACGTGAACAGAGTGAA+AGG | 0.557937 | 3.2:+78748675 | MS.gene06536:CDS |
| ATTGTTCACTAAAATGGAGC+AGG | 0.561588 | 3.2:+78748698 | MS.gene06536:CDS |
| AATCTTGATGAATATGGCAT+GGG | 0.562864 | 3.2:+78750161 | MS.gene06536:CDS |
| ATCGGCAGTGGCAGAGAGGG+GGG | 0.565993 | 3.2:-78749113 | None:intergenic |
| ATTCGTAGCCAAAACAACAT+TGG | 0.568395 | 3.2:+78750134 | MS.gene06536:CDS |
| ACATCGGCAGTGGCAGAGAG+GGG | 0.572548 | 3.2:-78749115 | None:intergenic |
| AAATCTTGATGAATATGGCA+TGG | 0.578232 | 3.2:+78750160 | MS.gene06536:CDS |
| ATTGTCAACAGAGTTTGCAT+TGG | 0.580353 | 3.2:-78750189 | None:intergenic |
| AACTCTGTTGACAATAACAA+TGG | 0.580414 | 3.2:+78750197 | MS.gene06536:CDS |
| CCAACACCGCCACCACCACT+AGG | 0.584109 | 3.2:-78749236 | None:intergenic |
| TCACCTCATGCAAATCATAG+TGG | 0.589731 | 3.2:+78749936 | MS.gene06536:CDS |
| AAAGCACATGACATCGGCAG+TGG | 0.598200 | 3.2:-78749125 | None:intergenic |
| GACGGACCAACTGACTTATG+TGG | 0.599548 | 3.2:+78748866 | MS.gene06536:CDS |
| AAAATATTGGAAGCAACATG+TGG | 0.603782 | 3.2:+78749682 | MS.gene06536:CDS |
| GTAGATAACATGCCTCCTCA+AGG | 0.611282 | 3.2:+78749537 | MS.gene06536:CDS |
| AGTACAATCAAGAAATATGA+CGG | 0.615154 | 3.2:+78748848 | MS.gene06536:CDS |
| CAAGCTGATCAAATGAGTGA+TGG | 0.615984 | 3.2:+78749206 | MS.gene06536:CDS |
| ACATTACATATCGCAACATG+TGG | 0.617634 | 3.2:+78749796 | MS.gene06536:CDS |
| CACATGCTTCAATACCACAC+AGG | 0.617665 | 3.2:-78748728 | None:intergenic |
| GACATGGAGGTATCACTGCA+TGG | 0.617708 | 3.2:+78750020 | MS.gene06536:CDS |
| ATACCGCCGCATGTAAGTCA+TGG | 0.618320 | 3.2:+78749507 | MS.gene06536:CDS |
| TCATGAGATGGCCACACTGA+GGG | 0.621251 | 3.2:-78748780 | None:intergenic |
| TAACAATGTAGGCAACGACA+TGG | 0.622250 | 3.2:+78750004 | MS.gene06536:CDS |
| TTTAATCCTAGTGGTGGTGG+CGG | 0.627901 | 3.2:+78749230 | MS.gene06536:CDS |
| CCTCCAAAATCGCCTTGAGG+AGG | 0.629694 | 3.2:-78749549 | None:intergenic |
| GATGATATGTTATTCCCTAG+AGG | 0.633514 | 3.2:+78749441 | MS.gene06536:CDS |
| CCTCATGCAAATCATAGTGG+TGG | 0.635594 | 3.2:+78749939 | MS.gene06536:CDS |
| GAACCTGTGAAATTCCATTG+AGG | 0.637565 | 3.2:-78749978 | None:intergenic |
| TGACATCGGCAGTGGCAGAG+AGG | 0.641912 | 3.2:-78749117 | None:intergenic |
| TATATTTGTTGATCTTGGCG+AGG | 0.643058 | 3.2:-78748917 | None:intergenic |
| ACTGAGGGTCTTGAACCACC+TGG | 0.643320 | 3.2:-78748765 | None:intergenic |
| AACGCATCAACATCACTACT+GGG | 0.649454 | 3.2:-78749723 | None:intergenic |
| ACATGCTTCAATACCACACA+GGG | 0.652435 | 3.2:-78748727 | None:intergenic |
| AGTGTGGCCATCTCATGATG+TGG | 0.654651 | 3.2:+78748785 | MS.gene06536:CDS |
| TTGTCTAAAGCACATGACAT+CGG | 0.658558 | 3.2:-78749131 | None:intergenic |
| TTCCCTAGAGGAAATTCGGG+GGG | 0.658559 | 3.2:+78749453 | MS.gene06536:CDS |
| CGTAGCCAAAACAACATTGG+GGG | 0.666330 | 3.2:+78750137 | MS.gene06536:CDS |
| ATCTTGATGAATATGGCATG+GGG | 0.670439 | 3.2:+78750162 | MS.gene06536:CDS |
| AAACCTCCAAAATCGCCTTG+AGG | 0.673422 | 3.2:-78749552 | None:intergenic |
| TGACCTCTAAAACTAAACTG+AGG | 0.679604 | 3.2:-78749636 | None:intergenic |
| TCGTAGCCAAAACAACATTG+GGG | 0.682214 | 3.2:+78750136 | MS.gene06536:CDS |
| TCACATGAAAATCCAAGTGG+CGG | 0.689481 | 3.2:+78749825 | MS.gene06536:CDS |
| GGACCAACTGACTTATGTGG+AGG | 0.690646 | 3.2:+78748869 | MS.gene06536:CDS |
| CCACCACTATGATTTGCATG+AGG | 0.697525 | 3.2:-78749939 | None:intergenic |
| TACCTATCTAGGTAGCAACA+TGG | 0.698196 | 3.2:+78749482 | MS.gene06536:CDS |
| ATCATGAGATGGCCACACTG+AGG | 0.712363 | 3.2:-78748781 | None:intergenic |
| ACATCGCCATGACTTACATG+CGG | 0.715191 | 3.2:-78749513 | None:intergenic |
| TCGCCATGACTTACATGCGG+CGG | 0.715340 | 3.2:-78749510 | None:intergenic |
| TATTCCCTAGAGGAAATTCG+GGG | 0.717198 | 3.2:+78749451 | MS.gene06536:CDS |
| ATTCCCTAGAGGAAATTCGG+GGG | 0.724819 | 3.2:+78749452 | MS.gene06536:CDS |
| GTGGTTCAAGACCCTCAGTG+TGG | 0.726788 | 3.2:+78748769 | MS.gene06536:CDS |
| ACATCAGATAAATATCTCAG+TGG | 0.729572 | 3.2:+78749411 | MS.gene06536:CDS |
| CCATCACATGAAAATCCAAG+TGG | 0.734016 | 3.2:+78749822 | MS.gene06536:CDS |
| CAATGTAGGCAACGACATGG+AGG | 0.748862 | 3.2:+78750007 | MS.gene06536:CDS |
| GAGCAGGTGAAAACCCTGTG+TGG | 0.782460 | 3.2:+78748714 | MS.gene06536:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTTGTATTAGTTTTT+TGG | - | chr3.2:78748811-78748830 | None:intergenic | 10.0% |
| !!! | GAAAGTTTTGATAAAAATAT+TGG | + | chr3.2:78749669-78749688 | MS.gene06536:CDS | 15.0% |
| !!! | TTGATTTTTACACAAAATTC+TGG | + | chr3.2:78749744-78749763 | MS.gene06536:CDS | 20.0% |
| ! | AAACACAAATATGGTAGATT+TGG | + | chr3.2:78749178-78749197 | MS.gene06536:CDS | 25.0% |
| ! | AGTACAATCAAGAAATATGA+CGG | + | chr3.2:78748848-78748867 | MS.gene06536:CDS | 25.0% |
| ! | AGTATGAAAAACAACTTGAT+TGG | + | chr3.2:78749014-78749033 | MS.gene06536:CDS | 25.0% |
| ! | GATAACAAAAATCATAGAGA+TGG | + | chr3.2:78750098-78750117 | MS.gene06536:CDS | 25.0% |
| !! | AACAATATTTTACAGCAACA+TGG | + | chr3.2:78749299-78749318 | MS.gene06536:intron | 25.0% |
| !! | AATGACAATATGGTAGATTT+TGG | + | chr3.2:78749152-78749171 | MS.gene06536:CDS | 25.0% |
| !! | ATGACAATATGGTAGATTTT+GGG | + | chr3.2:78749153-78749172 | MS.gene06536:CDS | 25.0% |
| !! | ATGCATCAAATTTTAAACGA+AGG | + | chr3.2:78748966-78748985 | MS.gene06536:CDS | 25.0% |
| !! | ATTTTTACACAAAATTCTGG+AGG | + | chr3.2:78749747-78749766 | MS.gene06536:CDS | 25.0% |
| !! | GTTAATCAAGAGAATTTTGA+AGG | + | chr3.2:78749269-78749288 | MS.gene06536:CDS | 25.0% |
| !! | TTCGTTATATTTGTTGATCT+TGG | - | chr3.2:78748925-78748944 | None:intergenic | 25.0% |
| !! | TTCGTTTAAAATTTGATGCA+TGG | - | chr3.2:78748967-78748986 | None:intergenic | 25.0% |
| !!! | GTTGATTTGTTATTTCATCA+AGG | + | chr3.2:78750059-78750078 | MS.gene06536:CDS | 25.0% |
| !!! | TTTTGGGATAAACACAAATA+TGG | + | chr3.2:78749169-78749188 | MS.gene06536:CDS | 25.0% |
| AAAATATTGGAAGCAACATG+TGG | + | chr3.2:78749682-78749701 | MS.gene06536:CDS | 30.0% | |
| AAATCTTGATGAATATGGCA+TGG | + | chr3.2:78750160-78750179 | MS.gene06536:CDS | 30.0% | |
| AACTCTGTTGACAATAACAA+TGG | + | chr3.2:78750197-78750216 | MS.gene06536:CDS | 30.0% | |
| AATCTTGATGAATATGGCAT+GGG | + | chr3.2:78750161-78750180 | MS.gene06536:CDS | 30.0% | |
| ACATCAGATAAATATCTCAG+TGG | + | chr3.2:78749411-78749430 | MS.gene06536:CDS | 30.0% | |
| ATAGAGATGGTGATAATATG+AGG | + | chr3.2:78750111-78750130 | MS.gene06536:CDS | 30.0% | |
| ATTCCTAATGTCGAAACAAT+AGG | + | chr3.2:78749861-78749880 | MS.gene06536:CDS | 30.0% | |
| GAAAGGATTGTTCACTAAAA+TGG | + | chr3.2:78748692-78748711 | MS.gene06536:CDS | 30.0% | |
| TAACAACACAGATAGCAAAA+TGG | + | chr3.2:78749908-78749927 | MS.gene06536:CDS | 30.0% | |
| ! | CACTGCCTTTTCAAAATAAT+CGG | - | chr3.2:78749078-78749097 | None:intergenic | 30.0% |
| ! | TGCTTTAGACAATGACAATA+TGG | + | chr3.2:78749142-78749161 | MS.gene06536:CDS | 30.0% |
| ! | TTGCTACTAGAATTTTCATG+TGG | - | chr3.2:78749600-78749619 | None:intergenic | 30.0% |
| !!! | GAGAACCGATTATTTTGAAA+AGG | + | chr3.2:78749070-78749089 | MS.gene06536:CDS | 30.0% |
| !!! | TTTCCTCAGTTTAGTTTTAG+AGG | + | chr3.2:78749633-78749652 | MS.gene06536:CDS | 30.0% |
| ACAATAGGTCAAGTAAGCTT+TGG | + | chr3.2:78749876-78749895 | MS.gene06536:CDS | 35.0% | |
| ACATTACATATCGCAACATG+TGG | + | chr3.2:78749796-78749815 | MS.gene06536:CDS | 35.0% | |
| ATCTTGATGAATATGGCATG+GGG | + | chr3.2:78750162-78750181 | MS.gene06536:CDS | 35.0% | |
| ATTCGTAGCCAAAACAACAT+TGG | + | chr3.2:78750134-78750153 | MS.gene06536:CDS | 35.0% | |
| ATTGTCAACAGAGTTTGCAT+TGG | - | chr3.2:78750192-78750211 | None:intergenic | 35.0% | |
| ATTGTTCACTAAAATGGAGC+AGG | + | chr3.2:78748698-78748717 | MS.gene06536:CDS | 35.0% | |
| GATGATATGTTATTCCCTAG+AGG | + | chr3.2:78749441-78749460 | MS.gene06536:CDS | 35.0% | |
| GTTATTCCCTAGAGGAAATT+CGG | + | chr3.2:78749449-78749468 | MS.gene06536:CDS | 35.0% | |
| TGACCTATTGTTTCGACATT+AGG | - | chr3.2:78749867-78749886 | None:intergenic | 35.0% | |
| TTATTCCCTAGAGGAAATTC+GGG | + | chr3.2:78749450-78749469 | MS.gene06536:CDS | 35.0% | |
| TTCGTAGCCAAAACAACATT+GGG | + | chr3.2:78750135-78750154 | MS.gene06536:CDS | 35.0% | |
| TTTCATCAAGGCAATGTTGA+AGG | + | chr3.2:78750071-78750090 | MS.gene06536:CDS | 35.0% | |
| ! | ACAGGTTCTGATAACAATGT+AGG | + | chr3.2:78749993-78750012 | MS.gene06536:CDS | 35.0% |
| ! | AGTGGCATTTTCAATCAACT+TGG | - | chr3.2:78748643-78748662 | None:intergenic | 35.0% |
| ! | CTACTAGAATTTTCATGTGG+TGG | - | chr3.2:78749597-78749616 | None:intergenic | 35.0% |
| ! | GAGGTTTTTATCATCACATG+TGG | + | chr3.2:78749568-78749587 | MS.gene06536:CDS | 35.0% |
| ! | TATATTTGTTGATCTTGGCG+AGG | - | chr3.2:78748920-78748939 | None:intergenic | 35.0% |
| ! | TTGTCTAAAGCACATGACAT+CGG | - | chr3.2:78749134-78749153 | None:intergenic | 35.0% |
| !! | GGAAGATTTTGATAGTAGCA+TGG | + | chr3.2:78749383-78749402 | MS.gene06536:CDS | 35.0% |
| !! | TGACCTCTAAAACTAAACTG+AGG | - | chr3.2:78749639-78749658 | None:intergenic | 35.0% |
| !! | TTTCTTGATTGTACTGACTC+TGG | - | chr3.2:78748843-78748862 | None:intergenic | 35.0% |
| !!! | AGTGATGGTTTTAATCCTAG+TGG | + | chr3.2:78749221-78749240 | MS.gene06536:CDS | 35.0% |
| !!! | GAAGCATGTGCAGTTTTATT+TGG | + | chr3.2:78748741-78748760 | MS.gene06536:CDS | 35.0% |
| AACGCATCAACATCACTACT+GGG | - | chr3.2:78749726-78749745 | None:intergenic | 40.0% | |
| ACATGCTTCAATACCACACA+GGG | - | chr3.2:78748730-78748749 | None:intergenic | 40.0% | |
| CAAGCTGATCAAATGAGTGA+TGG | + | chr3.2:78749206-78749225 | MS.gene06536:CDS | 40.0% | |
| CCATCACATGAAAATCCAAG+TGG | + | chr3.2:78749822-78749841 | MS.gene06536:CDS | 40.0% | |
| CTGACTTATGTGGAGGAAAA+AGG | + | chr3.2:78748876-78748895 | MS.gene06536:CDS | 40.0% | |
| CTTCCTCAATGGAATTTCAC+AGG | + | chr3.2:78749975-78749994 | MS.gene06536:CDS | 40.0% | |
| GAACCTGTGAAATTCCATTG+AGG | - | chr3.2:78749981-78750000 | None:intergenic | 40.0% | |
| GGGGGAAATCTTGATGAATA+TGG | + | chr3.2:78750155-78750174 | MS.gene06536:CDS | 40.0% | |
| GTAGCGAATCTTTCTTTGAG+TGG | - | chr3.2:78748661-78748680 | None:intergenic | 40.0% | |
| TAACAATGTAGGCAACGACA+TGG | + | chr3.2:78750004-78750023 | MS.gene06536:CDS | 40.0% | |
| TACCTATCTAGGTAGCAACA+TGG | + | chr3.2:78749482-78749501 | MS.gene06536:CDS | 40.0% | |
| TATTCCCTAGAGGAAATTCG+GGG | + | chr3.2:78749451-78749470 | MS.gene06536:CDS | 40.0% | |
| TCACATGAAAATCCAAGTGG+CGG | + | chr3.2:78749825-78749844 | MS.gene06536:CDS | 40.0% | |
| TCACCTCATGCAAATCATAG+TGG | + | chr3.2:78749936-78749955 | MS.gene06536:CDS | 40.0% | |
| TCGTAGCCAAAACAACATTG+GGG | + | chr3.2:78750136-78750155 | MS.gene06536:CDS | 40.0% | |
| TTGATGCTTTGCTTCCTCAA+TGG | + | chr3.2:78749964-78749983 | MS.gene06536:CDS | 40.0% | |
| TTTCCTCCACATAAGTCAGT+TGG | - | chr3.2:78748875-78748894 | None:intergenic | 40.0% | |
| ! | ACTCATTTGATCAGCTTGCT+TGG | - | chr3.2:78749204-78749223 | None:intergenic | 40.0% |
| ! | ATACCGCCACACACATATTT+TGG | + | chr3.2:78749324-78749343 | MS.gene06536:intron | 40.0% |
| ! | ATAGGTCAAGTAAGCTTTGG+AGG | + | chr3.2:78749879-78749898 | MS.gene06536:CDS | 40.0% |
| ! | CCACTTGGATTTTCATGTGA+TGG | - | chr3.2:78749825-78749844 | None:intergenic | 40.0% |
| ! | CTACTGGGATTTTCATGTGA+TGG | - | chr3.2:78749711-78749730 | None:intergenic | 40.0% |
| ! | GGCATTTTCTCAAGGCAATA+TGG | + | chr3.2:78749362-78749381 | MS.gene06536:intron | 40.0% |
| ! | GTTGATGTGGCATTTTCTCA+AGG | + | chr3.2:78749354-78749373 | MS.gene06536:intron | 40.0% |
| !! | GATTTCCCCCAATGTTGTTT+TGG | - | chr3.2:78750145-78750164 | None:intergenic | 40.0% |
| !! | TTTTTGGCCACATCATGAGA+TGG | - | chr3.2:78748795-78748814 | None:intergenic | 40.0% |
| !!! | GATGGTTTTAATCCTAGTGG+TGG | + | chr3.2:78749224-78749243 | MS.gene06536:CDS | 40.0% |
| !!! | TGTGCAGTTTTATTTGGTCC+AGG | + | chr3.2:78748747-78748766 | MS.gene06536:CDS | 40.0% |
| AAACCTCCAAAATCGCCTTG+AGG | - | chr3.2:78749555-78749574 | None:intergenic | 45.0% | |
| ACATCGCCATGACTTACATG+CGG | - | chr3.2:78749516-78749535 | None:intergenic | 45.0% | |
| AGAGAGGGGGGTTTATTAAG+AGG | - | chr3.2:78749104-78749123 | None:intergenic | 45.0% | |
| ATTCCCTAGAGGAAATTCGG+GGG | + | chr3.2:78749452-78749471 | MS.gene06536:CDS | 45.0% | |
| CAACGCATCAACATCACTAC+TGG | - | chr3.2:78749727-78749746 | None:intergenic | 45.0% | |
| CACATGCTTCAATACCACAC+AGG | - | chr3.2:78748731-78748750 | None:intergenic | 45.0% | |
| CCACCAAAATATGTGTGTGG+CGG | - | chr3.2:78749330-78749349 | None:intergenic | 45.0% | |
| CCACCACCAAAATATGTGTG+TGG | - | chr3.2:78749333-78749352 | None:intergenic | 45.0% | |
| CCTCATGCAAATCATAGTGG+TGG | + | chr3.2:78749939-78749958 | MS.gene06536:CDS | 45.0% | |
| CGTAGCCAAAACAACATTGG+GGG | + | chr3.2:78750137-78750156 | MS.gene06536:CDS | 45.0% | |
| CTCCATGTTGCTACCTAGAT+AGG | - | chr3.2:78749487-78749506 | None:intergenic | 45.0% | |
| GGAGGTCAATGCAACTTTGA+AGG | + | chr3.2:78749765-78749784 | MS.gene06536:CDS | 45.0% | |
| GTAGATAACATGCCTCCTCA+AGG | + | chr3.2:78749537-78749556 | MS.gene06536:CDS | 45.0% | |
| ! | CCACCACTATGATTTGCATG+AGG | - | chr3.2:78749942-78749961 | None:intergenic | 45.0% |
| ! | GGGGGTTCTAATACCTATCT+AGG | + | chr3.2:78749471-78749490 | MS.gene06536:CDS | 45.0% |
| !! | GGTTTTAATCCTAGTGGTGG+TGG | + | chr3.2:78749227-78749246 | MS.gene06536:CDS | 45.0% |
| !! | TTTAATCCTAGTGGTGGTGG+CGG | + | chr3.2:78749230-78749249 | MS.gene06536:CDS | 45.0% |
| !!! | CCACACACATATTTTGGTGG+TGG | + | chr3.2:78749330-78749349 | MS.gene06536:intron | 45.0% |
| !!! | GCAGTTTTATTTGGTCCAGG+TGG | + | chr3.2:78748750-78748769 | MS.gene06536:CDS | 45.0% |
| !!! | TTTTGGTGGTGGTGTTGATG+TGG | + | chr3.2:78749341-78749360 | MS.gene06536:intron | 45.0% |
| AAAGCACATGACATCGGCAG+TGG | - | chr3.2:78749128-78749147 | None:intergenic | 50.0% | |
| AACATGTCAACACCGCCACT+TGG | - | chr3.2:78749840-78749859 | None:intergenic | 50.0% | |
| AACCCCCCGAATTTCCTCTA+GGG | - | chr3.2:78749458-78749477 | None:intergenic | 50.0% | |
| AGTGTGGCCATCTCATGATG+TGG | + | chr3.2:78748785-78748804 | MS.gene06536:CDS | 50.0% | |
| ATACCGCCGCATGTAAGTCA+TGG | + | chr3.2:78749507-78749526 | MS.gene06536:CDS | 50.0% | |
| ATCATGAGATGGCCACACTG+AGG | - | chr3.2:78748784-78748803 | None:intergenic | 50.0% | |
| CAATGTAGGCAACGACATGG+AGG | + | chr3.2:78750007-78750026 | MS.gene06536:CDS | 50.0% | |
| CGCTACGTGAACAGAGTGAA+AGG | + | chr3.2:78748675-78748694 | MS.gene06536:CDS | 50.0% | |
| TCATGAGATGGCCACACTGA+GGG | - | chr3.2:78748783-78748802 | None:intergenic | 50.0% | |
| TTCCCTAGAGGAAATTCGGG+GGG | + | chr3.2:78749453-78749472 | MS.gene06536:CDS | 50.0% | |
| ! | ATGCCTCCTCAAGGCGATTT+TGG | + | chr3.2:78749546-78749565 | MS.gene06536:CDS | 50.0% |
| ! | GACGGACCAACTGACTTATG+TGG | + | chr3.2:78748866-78748885 | MS.gene06536:CDS | 50.0% |
| ! | GGACCAACTGACTTATGTGG+AGG | + | chr3.2:78748869-78748888 | MS.gene06536:CDS | 50.0% |
| !! | CCGCCACACACATATTTTGG+TGG | + | chr3.2:78749327-78749346 | MS.gene06536:intron | 50.0% |
| !! | GACATGGAGGTATCACTGCA+TGG | + | chr3.2:78750020-78750039 | MS.gene06536:CDS | 50.0% |
| ACTGAGGGTCTTGAACCACC+TGG | - | chr3.2:78748768-78748787 | None:intergenic | 55.0% | |
| CCTCCAAAATCGCCTTGAGG+AGG | - | chr3.2:78749552-78749571 | None:intergenic | 55.0% | |
| GAACCCCCCGAATTTCCTCT+AGG | - | chr3.2:78749459-78749478 | None:intergenic | 55.0% | |
| GAGCAGGTGAAAACCCTGTG+TGG | + | chr3.2:78748714-78748733 | MS.gene06536:CDS | 55.0% | |
| GTGGTTCAAGACCCTCAGTG+TGG | + | chr3.2:78748769-78748788 | MS.gene06536:CDS | 55.0% | |
| TCGCCATGACTTACATGCGG+CGG | - | chr3.2:78749513-78749532 | None:intergenic | 55.0% | |
| ! | CCTCCTCAAGGCGATTTTGG+AGG | + | chr3.2:78749549-78749568 | MS.gene06536:CDS | 55.0% |
| !! | TGGCGGTGTTGGTGCTATGT+TGG | + | chr3.2:78749247-78749266 | MS.gene06536:CDS | 55.0% |
| ACATCGGCAGTGGCAGAGAG+GGG | - | chr3.2:78749118-78749137 | None:intergenic | 60.0% | |
| GACATCGGCAGTGGCAGAGA+GGG | - | chr3.2:78749119-78749138 | None:intergenic | 60.0% | |
| TGACATCGGCAGTGGCAGAG+AGG | - | chr3.2:78749120-78749139 | None:intergenic | 60.0% | |
| ATCGGCAGTGGCAGAGAGGG+GGG | - | chr3.2:78749116-78749135 | None:intergenic | 65.0% | |
| CATCGGCAGTGGCAGAGAGG+GGG | - | chr3.2:78749117-78749136 | None:intergenic | 65.0% | |
| CCAACACCGCCACCACCACT+AGG | - | chr3.2:78749239-78749258 | None:intergenic | 65.0% | |
| !! | CCTAGTGGTGGTGGCGGTGT+TGG | + | chr3.2:78749236-78749255 | MS.gene06536:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 78748609 | 78750235 | 78748609 | ID=MS.gene06536 |
| chr3.2 | mRNA | 78748609 | 78750235 | 78748609 | ID=MS.gene06536.t1;Parent=MS.gene06536 |
| chr3.2 | exon | 78748609 | 78749290 | 78748609 | ID=MS.gene06536.t1.exon1;Parent=MS.gene06536.t1 |
| chr3.2 | CDS | 78748609 | 78749290 | 78748609 | ID=cds.MS.gene06536.t1;Parent=MS.gene06536.t1 |
| chr3.2 | exon | 78749376 | 78750235 | 78749376 | ID=MS.gene06536.t1.exon2;Parent=MS.gene06536.t1 |
| chr3.2 | CDS | 78749376 | 78750235 | 78749376 | ID=cds.MS.gene06536.t1;Parent=MS.gene06536.t1 |
| Gene Sequence |
| Protein sequence |
