Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065396.t1 | RHN72439.1 | 67.6 | 873 | 88 | 3 | 1 | 678 | 1 | 873 | 6.20E-300 | 1039.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065396.t1 | Q9SZL8 | 22.9 | 512 | 252 | 6 | 79 | 450 | 77 | 585 | 1.8e-29 | 132.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065396.t1 | A0A396J342 | 67.6 | 873 | 88 | 3 | 1 | 678 | 1 | 873 | 4.5e-300 | 1039.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene065396.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065396.t1 | MTR_1g050570 | 87.791 | 172 | 18 | 1 | 487 | 655 | 1 | 172 | 1.68e-88 | 274 |
| MS.gene065396.t1 | MTR_7g446520 | 57.895 | 228 | 74 | 2 | 58 | 281 | 71 | 280 | 1.24e-84 | 270 |
| MS.gene065396.t1 | MTR_7g028855 | 52.995 | 217 | 87 | 3 | 4 | 218 | 60 | 263 | 2.60e-68 | 231 |
| MS.gene065396.t1 | MTR_7g446480 | 75.410 | 122 | 30 | 0 | 152 | 273 | 140 | 261 | 3.58e-58 | 199 |
| MS.gene065396.t1 | MTR_7g446510 | 74.590 | 122 | 31 | 0 | 152 | 273 | 155 | 276 | 4.00e-56 | 194 |
| MS.gene065396.t1 | MTR_7g446510 | 69.231 | 52 | 16 | 0 | 280 | 331 | 1 | 52 | 5.47e-17 | 83.2 |
| MS.gene065396.t1 | MTR_8g467420 | 77.165 | 127 | 29 | 0 | 2 | 128 | 5 | 131 | 8.12e-48 | 166 |
| MS.gene065396.t1 | MTR_1g070355 | 32.683 | 205 | 136 | 1 | 66 | 270 | 65 | 267 | 2.76e-33 | 135 |
| MS.gene065396.t1 | MTR_5g076070 | 30.392 | 204 | 140 | 1 | 67 | 270 | 45 | 246 | 9.87e-30 | 119 |
| MS.gene065396.t1 | MTR_0645s0010 | 41.129 | 124 | 70 | 1 | 317 | 440 | 1 | 121 | 4.98e-27 | 106 |
| MS.gene065396.t1 | MTR_6g022080 | 29.070 | 172 | 122 | 0 | 66 | 237 | 76 | 247 | 1.88e-22 | 97.4 |
| MS.gene065396.t1 | MTR_0402s0040 | 32.243 | 214 | 120 | 7 | 43 | 251 | 7 | 200 | 1.46e-21 | 99.0 |
| MS.gene065396.t1 | MTR_6g051425 | 28.571 | 189 | 131 | 3 | 85 | 270 | 27 | 214 | 1.19e-20 | 94.4 |
| MS.gene065396.t1 | MTR_4g035820 | 28.425 | 292 | 188 | 9 | 81 | 357 | 81 | 366 | 1.25e-20 | 97.1 |
| MS.gene065396.t1 | MTR_8g468460 | 41.489 | 94 | 54 | 1 | 361 | 454 | 9 | 101 | 3.24e-15 | 72.4 |
| MS.gene065396.t1 | MTR_1g008290 | 30.894 | 123 | 80 | 2 | 135 | 257 | 10 | 127 | 1.32e-14 | 72.0 |
| MS.gene065396.t1 | MTR_6g022070 | 30.657 | 137 | 95 | 0 | 276 | 412 | 38 | 174 | 1.61e-14 | 75.9 |
| MS.gene065396.t1 | MTR_6g053140 | 28.409 | 176 | 111 | 4 | 15 | 186 | 40 | 204 | 2.06e-13 | 70.5 |
| MS.gene065396.t1 | MTR_0060s0090 | 32.812 | 128 | 77 | 2 | 30 | 157 | 20 | 138 | 1.12e-12 | 66.6 |
| MS.gene065396.t1 | MTR_3g080590 | 49.123 | 57 | 29 | 0 | 68 | 124 | 98 | 154 | 2.76e-11 | 62.8 |
| MS.gene065396.t1 | MTR_5g015480 | 33.588 | 131 | 80 | 3 | 69 | 196 | 50 | 176 | 3.03e-11 | 64.7 |
| MS.gene065396.t1 | MTR_2g101460 | 31.200 | 125 | 86 | 0 | 66 | 190 | 46 | 170 | 3.31e-11 | 63.9 |
| MS.gene065396.t1 | MTR_2g101460 | 31.200 | 125 | 86 | 0 | 66 | 190 | 36 | 160 | 5.50e-11 | 62.8 |
| MS.gene065396.t1 | MTR_7g074790 | 30.120 | 166 | 95 | 3 | 77 | 242 | 12 | 156 | 6.58e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065396.t1 | AT4G38180 | 32.841 | 271 | 162 | 8 | 12 | 275 | 16 | 273 | 3.69e-23 | 105 |
| MS.gene065396.t1 | AT4G38180 | 27.879 | 165 | 118 | 1 | 276 | 440 | 412 | 575 | 2.10e-15 | 80.5 |
| MS.gene065396.t1 | AT1G10240 | 30.918 | 207 | 125 | 7 | 47 | 239 | 14 | 216 | 2.66e-15 | 80.1 |
| MS.gene065396.t1 | AT1G10240 | 30.918 | 207 | 125 | 7 | 47 | 239 | 14 | 216 | 2.66e-15 | 80.1 |
| MS.gene065396.t1 | AT5G28530 | 25.847 | 236 | 157 | 6 | 81 | 313 | 61 | 281 | 9.27e-14 | 75.1 |
| MS.gene065396.t1 | AT5G28530 | 25.847 | 236 | 157 | 6 | 81 | 313 | 61 | 281 | 1.02e-13 | 75.1 |
| MS.gene065396.t1 | AT5G28530 | 29.193 | 161 | 110 | 3 | 81 | 238 | 61 | 220 | 1.27e-13 | 74.7 |
| MS.gene065396.t1 | AT5G28530 | 29.193 | 161 | 110 | 3 | 81 | 238 | 61 | 220 | 1.27e-13 | 74.7 |
| MS.gene065396.t1 | AT5G28530 | 29.193 | 161 | 110 | 3 | 81 | 238 | 61 | 220 | 1.37e-13 | 74.7 |
| MS.gene065396.t1 | AT4G15090 | 24.206 | 252 | 177 | 7 | 32 | 274 | 2 | 248 | 8.55e-12 | 68.9 |
| MS.gene065396.t1 | AT4G15090 | 22.680 | 194 | 140 | 4 | 276 | 465 | 388 | 575 | 1.36e-11 | 68.6 |
| MS.gene065396.t1 | AT4G15090 | 24.206 | 252 | 177 | 7 | 32 | 274 | 2 | 248 | 8.55e-12 | 68.9 |
| MS.gene065396.t1 | AT4G15090 | 22.680 | 194 | 140 | 4 | 276 | 465 | 388 | 575 | 1.36e-11 | 68.6 |
| MS.gene065396.t1 | AT4G15090 | 24.206 | 252 | 177 | 7 | 32 | 274 | 2 | 248 | 8.55e-12 | 68.9 |
| MS.gene065396.t1 | AT4G15090 | 22.680 | 194 | 140 | 4 | 276 | 465 | 388 | 575 | 1.36e-11 | 68.6 |
| MS.gene065396.t1 | AT4G15090 | 24.206 | 252 | 177 | 7 | 32 | 274 | 2 | 248 | 8.55e-12 | 68.9 |
| MS.gene065396.t1 | AT4G15090 | 22.680 | 194 | 140 | 4 | 276 | 465 | 388 | 575 | 1.36e-11 | 68.6 |
| MS.gene065396.t1 | AT4G15090 | 24.206 | 252 | 177 | 7 | 32 | 274 | 2 | 248 | 8.55e-12 | 68.9 |
| MS.gene065396.t1 | AT4G15090 | 22.680 | 194 | 140 | 4 | 276 | 465 | 388 | 575 | 1.36e-11 | 68.6 |
| MS.gene065396.t1 | AT4G38170 | 24.359 | 156 | 117 | 1 | 285 | 440 | 186 | 340 | 1.12e-11 | 68.2 |
| MS.gene065396.t1 | AT1G76320 | 25.490 | 153 | 113 | 1 | 278 | 430 | 327 | 478 | 2.91e-11 | 67.4 |
| MS.gene065396.t1 | AT1G76320 | 25.490 | 153 | 113 | 1 | 278 | 430 | 327 | 478 | 2.99e-11 | 67.4 |
| MS.gene065396.t1 | AT1G76320 | 25.490 | 153 | 113 | 1 | 278 | 430 | 327 | 478 | 2.99e-11 | 67.4 |
| MS.gene065396.t1 | AT1G76320 | 25.490 | 153 | 113 | 1 | 278 | 430 | 327 | 478 | 3.22e-11 | 67.0 |
| MS.gene065396.t1 | AT3G22170 | 24.742 | 194 | 136 | 4 | 276 | 465 | 397 | 584 | 5.46e-11 | 66.6 |
| MS.gene065396.t1 | AT3G22170 | 24.742 | 194 | 136 | 4 | 276 | 465 | 397 | 584 | 5.46e-11 | 66.6 |
Find 0 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTTTTTTTTTTTTGC+AGG | + | 54951:3914-3933 | MS.gene065396:intron | 10.0% |
| !! | ACATTATAATTCTTAATTCA+TGG | - | 54951:3874-3893 | MS.gene065396:intergenic | 15.0% |
| !!! | TATGAATTTTATTATCGTTA+TGG | + | 54951:1870-1889 | MS.gene065396:CDS | 15.0% |
| !! | AAAAAGAAAAGAAAACCTAA+TGG | + | 54951:4096-4115 | MS.gene065396:CDS | 20.0% |
| !! | ACTTCAATATAATGAAGAAT+TGG | + | 54951:3953-3972 | MS.gene065396:CDS | 20.0% |
| !! | AGAAGTTAAAGATGAAATTA+TGG | + | 54951:3228-3247 | MS.gene065396:CDS | 20.0% |
| !! | ATCTAATATTGTTGCATAAA+AGG | - | 54951:4038-4057 | MS.gene065396:intergenic | 20.0% |
| !! | GAAATTCTTAAACTTGAATT+TGG | + | 54951:1831-1850 | MS.gene065396:CDS | 20.0% |
| !! | TGACTTTAAATCAAAATTCA+CGG | + | 54951:3132-3151 | MS.gene065396:CDS | 20.0% |
| !!! | AAAAAAGAATGGTGTTTTTA+GGG | + | 54951:3615-3634 | MS.gene065396:CDS | 20.0% |
| !!! | AAATTCAAAAATTTTGCCTT+TGG | - | 54951:3059-3078 | MS.gene065396:intergenic | 20.0% |
| !!! | ACAAATATACTTTCTCTTTT+TGG | - | 54951:4007-4026 | MS.gene065396:intergenic | 20.0% |
| !!! | ATTTATGCATAATTTTGAAC+AGG | + | 54951:3075-3094 | MS.gene065396:CDS | 20.0% |
| !!! | TTTCCATACATTCTAAAAAA+CGG | - | 54951:2661-2680 | MS.gene065396:intergenic | 20.0% |
| ! | AAGTTTAAGAATTTCATCAG+AGG | - | 54951:1826-1845 | MS.gene065396:intergenic | 25.0% |
| ! | AATCAAAACCTGTCATATAA+TGG | + | 54951:2232-2251 | MS.gene065396:CDS | 25.0% |
| ! | ATCAAAACCTGTCATATAAT+GGG | + | 54951:2233-2252 | MS.gene065396:CDS | 25.0% |
| ! | TATAAAGAAAACACCATTTC+TGG | + | 54951:2805-2824 | MS.gene065396:intron | 25.0% |
| ! | TATTTACGTGATAAGTTCTT+TGG | + | 54951:2971-2990 | MS.gene065396:CDS | 25.0% |
| !! | AAGAATGAAAAGACTGTTTT+GGG | + | 54951:2445-2464 | MS.gene065396:intron | 25.0% |
| !! | AATGTACTCAAATTTTACAC+CGG | + | 54951:2844-2863 | MS.gene065396:CDS | 25.0% |
| !! | CAAAAAAGAATGGTGTTTTT+AGG | + | 54951:3614-3633 | MS.gene065396:CDS | 25.0% |
| !! | CATAATTTTGAACAGGTTTT+GGG | + | 54951:3082-3101 | MS.gene065396:CDS | 25.0% |
| !!! | AAAAACACCATTCTTTTTTG+AGG | - | 54951:3614-3633 | MS.gene065396:intergenic | 25.0% |
| !!! | AGGTCTGATTATTTTTGTTT+TGG | + | 54951:2482-2501 | MS.gene065396:intron | 25.0% |
| !!! | TAAAATTTCTGAAGCAGATA+GGG | + | 54951:2181-2200 | MS.gene065396:CDS | 25.0% |
| AAACAATCGAGTCATATAAG+TGG | + | 54951:2627-2646 | MS.gene065396:intron | 30.0% | |
| AAAGAAGCCTCAAAAAAGAA+TGG | + | 54951:3604-3623 | MS.gene065396:CDS | 30.0% | |
| AAAGATGAAATTATGGATGC+TGG | + | 54951:3235-3254 | MS.gene065396:CDS | 30.0% | |
| AACAAAAATTCCAGAGATTC+CGG | + | 54951:4158-4177 | MS.gene065396:CDS | 30.0% | |
| AACAATCGAGTCATATAAGT+GGG | + | 54951:2628-2647 | MS.gene065396:intron | 30.0% | |
| ACAAAAAAGACATGACAACA+TGG | - | 54951:3415-3434 | MS.gene065396:intergenic | 30.0% | |
| ATTCAGAAGAATGAACTTGA+AGG | + | 54951:2896-2915 | MS.gene065396:CDS | 30.0% | |
| ATTTCCATTGGAAATTTACC+AGG | - | 54951:4240-4259 | MS.gene065396:intergenic | 30.0% | |
| CAAATATAATGGTCTGTGAA+TGG | - | 54951:2586-2605 | MS.gene065396:intergenic | 30.0% | |
| CAAGCAAAAGAAATGTAAAG+AGG | + | 54951:4134-4153 | MS.gene065396:CDS | 30.0% | |
| CATATATCCCATTATATGAC+AGG | - | 54951:2243-2262 | MS.gene065396:intergenic | 30.0% | |
| CATTCACAGACCATTATATT+TGG | + | 54951:2584-2603 | MS.gene065396:intron | 30.0% | |
| GAACTTATCACGTAAATATG+CGG | - | 54951:2969-2988 | MS.gene065396:intergenic | 30.0% | |
| GATACCATGGTTTATACATT+GGG | + | 54951:3292-3311 | MS.gene065396:CDS | 30.0% | |
| TAAATTGCTTGCATTTCCAT+TGG | - | 54951:4252-4271 | MS.gene065396:intergenic | 30.0% | |
| TACTCAGTCTAAAAGTTATC+AGG | + | 54951:3693-3712 | MS.gene065396:CDS | 30.0% | |
| TATCGTTATGGAAAATGCAA+AGG | + | 54951:1882-1901 | MS.gene065396:CDS | 30.0% | |
| TCGTATTCAGCATATAACAT+TGG | - | 54951:2410-2429 | MS.gene065396:intergenic | 30.0% | |
| TGCATTACAAAGCTAAACAA+GGG | + | 54951:2075-2094 | MS.gene065396:CDS | 30.0% | |
| TTCAGCATATAACATTGGAT+CGG | - | 54951:2405-2424 | MS.gene065396:intergenic | 30.0% | |
| ! | AAAGGTTTTTCCATTAGGAA+AGG | + | 54951:1900-1919 | MS.gene065396:CDS | 30.0% |
| ! | AATGCAAAGGTTTTTCCATT+AGG | + | 54951:1895-1914 | MS.gene065396:CDS | 30.0% |
| ! | ATCCGTTGTGTATATTTTCT+GGG | + | 54951:2552-2571 | MS.gene065396:intron | 30.0% |
| ! | CAGAAATTTTACGATACAGT+GGG | - | 54951:2172-2191 | MS.gene065396:intergenic | 30.0% |
| ! | CTGTCATATAATGGGATATA+TGG | + | 54951:2241-2260 | MS.gene065396:CDS | 30.0% |
| ! | GAAGAATGAAAAGACTGTTT+TGG | + | 54951:2444-2463 | MS.gene065396:intron | 30.0% |
| ! | GCATAATTTTGAACAGGTTT+TGG | + | 54951:3081-3100 | MS.gene065396:CDS | 30.0% |
| ! | GTAGTGGAATAATTACAATG+AGG | + | 54951:1940-1959 | MS.gene065396:CDS | 30.0% |
| ! | TATCCGTTGTGTATATTTTC+TGG | + | 54951:2551-2570 | MS.gene065396:intron | 30.0% |
| ! | TCAGAAATTTTACGATACAG+TGG | - | 54951:2173-2192 | MS.gene065396:intergenic | 30.0% |
| ! | TTTTCCCAATGTATAAACCA+TGG | - | 54951:3299-3318 | MS.gene065396:intergenic | 30.0% |
| !! | GTAAAATTTCTGAAGCAGAT+AGG | + | 54951:2180-2199 | MS.gene065396:CDS | 30.0% |
| !!! | GAACCGTTTTTTAGAATGTA+TGG | + | 54951:2655-2674 | MS.gene065396:intron | 30.0% |
| !!! | TCATGTCTTTTTTGTGATGA+AGG | + | 54951:3420-3439 | MS.gene065396:intron | 30.0% |
| AAGAATTTCATCAGAGGCAA+TGG | - | 54951:1820-1839 | MS.gene065396:intergenic | 35.0% | |
| AATCATCAACTTCCTGTGTT+GGG | + | 54951:4298-4317 | MS.gene065396:CDS | 35.0% | |
| AATGAGGGAAGCTATTAAAC+AGG | + | 54951:2721-2740 | MS.gene065396:intron | 35.0% | |
| AATGTTTGGTTATGACACGT+TGG | + | 54951:3467-3486 | MS.gene065396:intron | 35.0% | |
| AATTACCAAACAATGCCTTG+CGG | - | 54951:3821-3840 | MS.gene065396:intergenic | 35.0% | |
| AGCACTTATCTAGGAATGAT+AGG | + | 54951:2000-2019 | MS.gene065396:CDS | 35.0% | |
| AGTTTGTGTGCAACAAGAAT+GGG | + | 54951:1964-1983 | MS.gene065396:CDS | 35.0% | |
| ATATAATGGTCTGTGAATGG+TGG | - | 54951:2583-2602 | MS.gene065396:intergenic | 35.0% | |
| ATCTGTGTATTCTTCTTCAC+TGG | - | 54951:1646-1665 | MS.gene065396:intergenic | 35.0% | |
| ATGAACTTGAAGGAAATGCT+TGG | + | 54951:2906-2925 | MS.gene065396:CDS | 35.0% | |
| ATTAGCATCTATTTCCCCAT+TGG | - | 54951:3530-3549 | MS.gene065396:intergenic | 35.0% | |
| CAACGCAACACCAAATATAA+TGG | - | 54951:2597-2616 | MS.gene065396:intergenic | 35.0% | |
| CAAGCAATTTACCCCAATTA+TGG | + | 54951:4261-4280 | MS.gene065396:CDS | 35.0% | |
| CAAGTGTGTAAATTTACGTG+GGG | - | 54951:2147-2166 | MS.gene065396:intergenic | 35.0% | |
| CACCCAGAAAATATACACAA+CGG | - | 54951:2557-2576 | MS.gene065396:intergenic | 35.0% | |
| CAGTCTAAAAGTTATCAGGT+AGG | + | 54951:3697-3716 | MS.gene065396:CDS | 35.0% | |
| GAATACGATGTCAACAATGA+TGG | + | 54951:2422-2441 | MS.gene065396:intron | 35.0% | |
| GATGAATCAGTTCAACAAGA+GGG | + | 54951:1747-1766 | MS.gene065396:CDS | 35.0% | |
| GCAAGTGTGTAAATTTACGT+GGG | - | 54951:2148-2167 | MS.gene065396:intergenic | 35.0% | |
| GGATACCATGGTTTATACAT+TGG | + | 54951:3291-3310 | MS.gene065396:CDS | 35.0% | |
| GGTTGAACTACATTTGTAAC+TGG | - | 54951:4198-4217 | MS.gene065396:intergenic | 35.0% | |
| GTATTCTTCTTCACTGGAAT+CGG | - | 54951:1640-1659 | MS.gene065396:intergenic | 35.0% | |
| GTGCATTACAAAGCTAAACA+AGG | + | 54951:2074-2093 | MS.gene065396:CDS | 35.0% | |
| TGAACTTGAAGGAAATGCTT+GGG | + | 54951:2907-2926 | MS.gene065396:CDS | 35.0% | |
| TGATCACATACCAGAATGTT+TGG | + | 54951:3453-3472 | MS.gene065396:intron | 35.0% | |
| TGATGAATCAGTTCAACAAG+AGG | + | 54951:1746-1765 | MS.gene065396:CDS | 35.0% | |
| TGCAAGTGTGTAAATTTACG+TGG | - | 54951:2149-2168 | MS.gene065396:intergenic | 35.0% | |
| TTGGGAAAATATCGTGAGAA+AGG | + | 54951:3310-3329 | MS.gene065396:CDS | 35.0% | |
| ! | AAAGAAAACACCATTTCTGG+AGG | + | 54951:2808-2827 | MS.gene065396:intron | 35.0% |
| ! | AAGAAAACACCATTTCTGGA+GGG | + | 54951:2809-2828 | MS.gene065396:intron | 35.0% |
| ! | ATGATTGAACTTGCTCGATT+TGG | + | 54951:3550-3569 | MS.gene065396:CDS | 35.0% |
| !! | AAGACATATTCTAGAGCCAA+AGG | + | 54951:3040-3059 | MS.gene065396:CDS | 35.0% |
| !! | TATATTTGGTGTTGCGTTGT+TGG | + | 54951:2598-2617 | MS.gene065396:intron | 35.0% |
| !! | TGATTGAAGAGCATCAAGTT+GGG | - | 54951:2207-2226 | MS.gene065396:intergenic | 35.0% |
| !!! | AATTTTGAACAGGTTTTGGG+AGG | + | 54951:3085-3104 | MS.gene065396:CDS | 35.0% |
| !!! | CTTTTTTGTGATGAAGGAAG+AGG | + | 54951:3426-3445 | MS.gene065396:intron | 35.0% |
| !!! | GTAGTGTCTAGTTTTGTAGA+GGG | + | 54951:2104-2123 | MS.gene065396:CDS | 35.0% |
| !!! | TAGTGTCTAGTTTTGTAGAG+GGG | + | 54951:2105-2124 | MS.gene065396:CDS | 35.0% |
| !!! | TGGTGTTTTTAGGGACATAA+TGG | + | 54951:3624-3643 | MS.gene065396:CDS | 35.0% |
| !!! | TGTAGTGTCTAGTTTTGTAG+AGG | + | 54951:2103-2122 | MS.gene065396:CDS | 35.0% |
| !!! | TTTTTGTTTTGGCGACGTTT+TGG | + | 54951:2493-2512 | MS.gene065396:intron | 35.0% |
| AAAGTACAAGTCATACCGCA+AGG | + | 54951:3803-3822 | MS.gene065396:CDS | 40.0% | |
| AAGGGTGGATATACTGATGT+AGG | + | 54951:2272-2291 | MS.gene065396:CDS | 40.0% | |
| AAGTAAGTTCCCAAAAGCAG+TGG | + | 54951:2679-2698 | MS.gene065396:intron | 40.0% | |
| AAGTTATCAGGTAGGTGATC+CGG | + | 54951:3705-3724 | MS.gene065396:CDS | 40.0% | |
| ACCACCATGAAGTCCATAAT+TGG | - | 54951:4277-4296 | MS.gene065396:intergenic | 40.0% | |
| AGATGGAGATGGATCAATGA+GGG | + | 54951:2706-2725 | MS.gene065396:intron | 40.0% | |
| AGCATATAACATTGGATCGG+TGG | - | 54951:2402-2421 | MS.gene065396:intergenic | 40.0% | |
| ATAAGCGATGAGATGCATCA+GGG | - | 54951:2751-2770 | MS.gene065396:intergenic | 40.0% | |
| ATATGCGAACAAGTCACTGT+GGG | + | 54951:2940-2959 | MS.gene065396:CDS | 40.0% | |
| ATGCGCGATGTCATTAAAGA+CGG | + | 54951:2335-2354 | MS.gene065396:CDS | 40.0% | |
| ATTTACGTGGGGTTACTTCA+TGG | - | 54951:2136-2155 | MS.gene065396:intergenic | 40.0% | |
| CAAAACTCCTCAAATTGCTC+CGG | - | 54951:2866-2885 | MS.gene065396:intergenic | 40.0% | |
| CACCATGAAGTCCATAATTG+GGG | - | 54951:4275-4294 | MS.gene065396:intergenic | 40.0% | |
| CAGTTTGTGTGCAACAAGAA+TGG | + | 54951:1963-1982 | MS.gene065396:CDS | 40.0% | |
| CCACCATGAAGTCCATAATT+GGG | - | 54951:4276-4295 | MS.gene065396:intergenic | 40.0% | |
| CCATTAGGAAAGGTGATGTT+AGG | + | 54951:1910-1929 | MS.gene065396:CDS | 40.0% | |
| CCTAACATCACCTTTCCTAA+TGG | - | 54951:1913-1932 | MS.gene065396:intergenic | 40.0% | |
| CGTGTCATAACCAAACATTC+TGG | - | 54951:3466-3485 | MS.gene065396:intergenic | 40.0% | |
| CTCGAGGACAAAAAATGTGT+GGG | + | 54951:3268-3287 | MS.gene065396:CDS | 40.0% | |
| CTTGATGCTCTTCAATCACA+TGG | + | 54951:2209-2228 | MS.gene065396:CDS | 40.0% | |
| GAATCATCAACTTCCTGTGT+TGG | + | 54951:4297-4316 | MS.gene065396:CDS | 40.0% | |
| GATAGCTTCACATTGAGATG+TGG | - | 54951:3008-3027 | MS.gene065396:intergenic | 40.0% | |
| GATCTCTGCTGTGTAAATTC+TGG | - | 54951:3203-3222 | MS.gene065396:intergenic | 40.0% | |
| GATGCTGAAGATGATGTTGA+TGG | + | 54951:1702-1721 | MS.gene065396:CDS | 40.0% | |
| GCAACCTGGTAAATTTCCAA+TGG | + | 54951:4233-4252 | MS.gene065396:CDS | 40.0% | |
| GGATATATGGTTGCTCAGAA+GGG | + | 54951:2254-2273 | MS.gene065396:CDS | 40.0% | |
| GTTGCGTTCTTCTTCTTCTT+TGG | - | 54951:3754-3773 | MS.gene065396:intergenic | 40.0% | |
| TACCCCAATTATGGACTTCA+TGG | + | 54951:4270-4289 | MS.gene065396:CDS | 40.0% | |
| TCGAGGACAAAAAATGTGTG+GGG | + | 54951:3269-3288 | MS.gene065396:CDS | 40.0% | |
| TCTCGAGGACAAAAAATGTG+TGG | + | 54951:3267-3286 | MS.gene065396:CDS | 40.0% | |
| TTCTGAACAGCGATTCCAAT+GGG | + | 54951:3512-3531 | MS.gene065396:intron | 40.0% | |
| TTTCTAAACCCCTCCAGAAA+TGG | - | 54951:2821-2840 | MS.gene065396:intergenic | 40.0% | |
| TTTCTGAACAGCGATTCCAA+TGG | + | 54951:3511-3530 | MS.gene065396:intron | 40.0% | |
| ! | AGAAAACACCATTTCTGGAG+GGG | + | 54951:2810-2829 | MS.gene065396:intron | 40.0% |
| ! | TTTTACACCGGAGCAATTTG+AGG | + | 54951:2856-2875 | MS.gene065396:CDS | 40.0% |
| !! | AAAAGACTGTTTTGGGCTGA+TGG | + | 54951:2452-2471 | MS.gene065396:intron | 40.0% |
| !! | AAAGACTGTTTTGGGCTGAT+GGG | + | 54951:2453-2472 | MS.gene065396:intron | 40.0% |
| !! | CATCTGTTACCACTGCTTTT+GGG | - | 54951:2691-2710 | MS.gene065396:intergenic | 40.0% |
| !! | GAGACAAGAAGCACTTATCT+AGG | + | 54951:1991-2010 | MS.gene065396:CDS | 40.0% |
| !! | GTGATTGAAGAGCATCAAGT+TGG | - | 54951:2208-2227 | MS.gene065396:intergenic | 40.0% |
| !!! | GTCATGAATGTTGCTGGTTT+TGG | + | 54951:4333-4352 | MS.gene065396:CDS | 40.0% |
| AAAATGTGTGGGGGATACCA+TGG | + | 54951:3279-3298 | MS.gene065396:CDS | 45.0% | |
| CAGATGGAGATGGATCAATG+AGG | + | 54951:2705-2724 | MS.gene065396:intron | 45.0% | |
| CATAAGCGATGAGATGCATC+AGG | - | 54951:2752-2771 | MS.gene065396:intergenic | 45.0% | |
| CATATGCGAACAAGTCACTG+TGG | + | 54951:2939-2958 | MS.gene065396:CDS | 45.0% | |
| CATCACTCTCAATCAAACGC+AGG | - | 54951:3177-3196 | MS.gene065396:intergenic | 45.0% | |
| CCAAAAGCAGTGGTAACAGA+TGG | + | 54951:2689-2708 | MS.gene065396:intron | 45.0% | |
| CCCAATTATGGACTTCATGG+TGG | + | 54951:4273-4292 | MS.gene065396:CDS | 45.0% | |
| CGAGGACAAAAAATGTGTGG+GGG | + | 54951:3270-3289 | MS.gene065396:CDS | 45.0% | |
| CGCATTCTTGTGTAAATGCC+AGG | - | 54951:2777-2796 | MS.gene065396:intergenic | 45.0% | |
| CGTTGGACAAAGAACGCAAA+AGG | + | 54951:3484-3503 | MS.gene065396:intron | 45.0% | |
| CTTGTGCTAGCATTGCCATT+AGG | - | 54951:4114-4133 | MS.gene065396:intergenic | 45.0% | |
| GATGTTAGGCGCAATAGTAG+TGG | + | 54951:1924-1943 | MS.gene065396:CDS | 45.0% | |
| GCACAAGTCATGAATGTTGC+TGG | + | 54951:4327-4346 | MS.gene065396:CDS | 45.0% | |
| GGAACACCACAAAGACTGTT+TGG | + | 54951:1611-1630 | MS.gene065396:CDS | 45.0% | |
| GGGATATATGGTTGCTCAGA+AGG | + | 54951:2253-2272 | MS.gene065396:CDS | 45.0% | |
| GTAGACTATTCGAGTCACGT+GGG | + | 54951:3386-3405 | MS.gene065396:intron | 45.0% | |
| TATATGGTTGCTCAGAAGGG+TGG | + | 54951:2257-2276 | MS.gene065396:CDS | 45.0% | |
| TCTGAACAGCGATTCCAATG+GGG | + | 54951:3513-3532 | MS.gene065396:intron | 45.0% | |
| TGTAGACTATTCGAGTCACG+TGG | + | 54951:3385-3404 | MS.gene065396:intron | 45.0% | |
| ! | CCATCTGTTACCACTGCTTT+TGG | - | 54951:2692-2711 | MS.gene065396:intergenic | 45.0% |
| ! | CCTTGCTTCGCAATTTGTTC+GGG | - | 54951:2048-2067 | MS.gene065396:intergenic | 45.0% |
| ! | CGGAGCAATTTGAGGAGTTT+TGG | + | 54951:2864-2883 | MS.gene065396:CDS | 45.0% |
| ! | GCCTTGCTTCGCAATTTGTT+CGG | - | 54951:2049-2068 | MS.gene065396:intergenic | 45.0% |
| !! | ATTTGGTGTTGCGTTGTTGG+AGG | + | 54951:2601-2620 | MS.gene065396:intron | 45.0% |
| !! | TCATACCGCAAGGCATTGTT+TGG | + | 54951:3813-3832 | MS.gene065396:CDS | 45.0% |
| AACTTCCTGTGTTGGGCTCT+TGG | + | 54951:4305-4324 | MS.gene065396:CDS | 50.0% | |
| ACTGGCAAATCAGCTGTCTC+CGG | - | 54951:4180-4199 | MS.gene065396:intergenic | 50.0% | |
| CATCTCATCGCTTATGTGCC+TGG | + | 54951:2756-2775 | MS.gene065396:intron | 50.0% | |
| CCAGGTTGCAACACATTCAC+AGG | - | 54951:4222-4241 | MS.gene065396:intergenic | 50.0% | |
| CCCGAACAAATTGCGAAGCA+AGG | + | 54951:2045-2064 | MS.gene065396:CDS | 50.0% | |
| CCTGTGAATGTGTTGCAACC+TGG | + | 54951:4219-4238 | MS.gene065396:CDS | 50.0% | |
| CCTTTGCTCTTCACAGTGAC+CGG | - | 54951:3727-3746 | MS.gene065396:intergenic | 50.0% | |
| CGGAGTCCAAACAGTCTTTG+TGG | - | 54951:1620-1639 | MS.gene065396:intergenic | 50.0% | |
| GCAGTGGTAACAGATGGAGA+TGG | + | 54951:2695-2714 | MS.gene065396:intron | 50.0% | |
| GCGATGCATTAGCAAGTGAC+AGG | + | 54951:1778-1797 | MS.gene065396:CDS | 50.0% | |
| GGTTGCAACACATTCACAGG+AGG | - | 54951:4219-4238 | MS.gene065396:intergenic | 50.0% | |
| TTTGGGCTGATGGGAGTAGT+AGG | + | 54951:2462-2481 | MS.gene065396:intron | 50.0% | |
| CCGGTCACTGTGAAGAGCAA+AGG | + | 54951:3724-3743 | MS.gene065396:CDS | 55.0% | |
| TCAGCTGTCTCCGGAATCTC+TGG | - | 54951:4171-4190 | MS.gene065396:intergenic | 55.0% | |
| TGCTGGTGCAATACGTCTCG+AGG | + | 54951:3252-3271 | MS.gene065396:CDS | 55.0% | |
| TTGTGCCAAGAGCCCAACAC+AGG | - | 54951:4313-4332 | MS.gene065396:intergenic | 55.0% | |
| ! | CGCAGGTGAGTTGACAACAC+AGG | - | 54951:3160-3179 | MS.gene065396:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 54951 | gene | 1609 | 4404 | 1609 | ID=MS.gene065396 |
| 54951 | mRNA | 1609 | 4404 | 1609 | ID=MS.gene065396.t1;Parent=MS.gene065396 |
| 54951 | exon | 1609 | 2430 | 1609 | ID=MS.gene065396.t1.exon1;Parent=MS.gene065396.t1 |
| 54951 | CDS | 1609 | 2430 | 1609 | ID=cds.MS.gene065396.t1;Parent=MS.gene065396.t1 |
| 54951 | exon | 2830 | 3364 | 2830 | ID=MS.gene065396.t1.exon2;Parent=MS.gene065396.t1 |
| 54951 | CDS | 2830 | 3364 | 2830 | ID=cds.MS.gene065396.t1;Parent=MS.gene065396.t1 |
| 54951 | exon | 3542 | 3834 | 3542 | ID=MS.gene065396.t1.exon3;Parent=MS.gene065396.t1 |
| 54951 | CDS | 3542 | 3834 | 3542 | ID=cds.MS.gene065396.t1;Parent=MS.gene065396.t1 |
| 54951 | exon | 3936 | 4016 | 3936 | ID=MS.gene065396.t1.exon4;Parent=MS.gene065396.t1 |
| 54951 | CDS | 3936 | 4016 | 3936 | ID=cds.MS.gene065396.t1;Parent=MS.gene065396.t1 |
| 54951 | exon | 4096 | 4404 | 4096 | ID=MS.gene065396.t1.exon5;Parent=MS.gene065396.t1 |
| 54951 | CDS | 4096 | 4404 | 4096 | ID=cds.MS.gene065396.t1;Parent=MS.gene065396.t1 |
| Gene Sequence |
| Protein sequence |
