AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene065437

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene065437.t1 MTR_7g081270 96.831 284 9 0 1 284 1 284 0.0 565
MS.gene065437.t1 MTR_2g049780 41.121 214 122 4 67 279 94 304 3.61e-44 152
MS.gene065437.t1 MTR_2g067230 31.183 279 171 8 6 279 37 299 3.31e-33 124
MS.gene065437.t1 MTR_5g041630 32.959 267 152 7 19 277 43 290 4.54e-30 115
MS.gene065437.t1 MTR_4g084630 29.493 217 133 5 77 283 116 322 3.17e-17 80.9
MS.gene065437.t1 MTR_2g034600 31.553 206 127 7 78 279 287 482 1.26e-16 80.1
MS.gene065437.t1 MTR_2g034600 31.553 206 127 7 78 279 352 547 1.33e-16 80.1
MS.gene065437.t1 MTR_2g034600 31.553 206 127 7 78 279 348 543 1.34e-16 80.1
MS.gene065437.t1 MTR_5g094610 25.794 252 172 7 44 283 227 475 1.62e-16 79.7
MS.gene065437.t1 MTR_6g003960 25.234 214 113 4 75 283 420 591 6.48e-16 77.8
MS.gene065437.t1 MTR_4g070060 27.184 206 143 5 77 279 384 585 3.15e-15 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene065437.t1 AT3G18870 54.618 249 109 3 36 284 29 273 6.04e-94 278
MS.gene065437.t1 AT2G03050 34.553 246 145 5 42 279 31 268 4.02e-42 146
MS.gene065437.t1 AT2G03050 34.553 246 145 5 42 279 32 269 4.12e-42 146
MS.gene065437.t1 AT2G34620 37.619 210 127 4 71 279 84 290 4.65e-41 144
MS.gene065437.t1 AT2G36000 36.041 197 117 6 85 279 118 307 2.81e-28 110
MS.gene065437.t1 AT2G36000 36.224 196 116 6 86 279 119 307 3.83e-28 110
MS.gene065437.t1 AT5G55580 27.381 252 168 8 44 283 114 362 9.68e-18 82.8
MS.gene065437.t1 AT5G55580 27.381 252 168 8 44 283 220 468 1.25e-17 82.8
MS.gene065437.t1 AT4G38160 27.619 210 147 4 77 283 117 324 6.19e-16 77.0
MS.gene065437.t1 AT4G38160 27.619 210 147 4 77 283 117 324 6.19e-16 77.0
MS.gene065437.t1 AT4G38160 27.619 210 147 4 77 283 117 324 7.29e-16 77.0
MS.gene065437.t1 AT1G78930 29.843 191 128 5 91 279 388 574 7.63e-16 77.8
MS.gene065437.t1 AT4G38160 27.619 210 147 4 77 283 117 324 8.49e-16 77.0
MS.gene065437.t1 AT4G14605 28.780 205 134 7 78 279 272 467 1.31e-14 73.9
MS.gene065437.t1 AT4G14605 28.780 205 134 7 78 279 272 467 1.31e-14 73.9
MS.gene065437.t1 AT2G21710 26.446 242 133 5 78 279 356 592 2.65e-13 70.1

Find 111 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCGAGGTTACCAACAATATT+AGG 0.169819 7.3:+26341548 MS.gene065437:CDS
TCCGGGTGAGGGAGGTTATT+TGG 0.238712 7.3:-26341119 None:intergenic
TCCTGTTAGTTGGCCTGTTC+AGG 0.273978 7.3:-26341424 None:intergenic
GAAGACTGGGGAGAGGGAGG+TGG 0.284868 7.3:-26341258 None:intergenic
GACTGGGGAGAGGGAGGTGG+GGG 0.285909 7.3:-26341255 None:intergenic
GGAGGGTTGGTTTGAGGATG+TGG 0.308413 7.3:-26341370 None:intergenic
TTTGGCGATGGTGGAAAGAT+TGG 0.333987 7.3:-26340947 None:intergenic
AGACTGGGGAGAGGGAGGTG+GGG 0.336306 7.3:-26341256 None:intergenic
GGTGAAGACTGGGGAGAGGG+AGG 0.356387 7.3:-26341261 None:intergenic
TTGATGTAACCGTTTCTGTT+AGG 0.373078 7.3:-26341026 None:intergenic
AGATGGAGGTTGTGAAGAGG+CGG 0.380828 7.3:-26341232 None:intergenic
TTGGGTTTAGTTTGGATAAG+AGG 0.385472 7.3:+26341666 MS.gene065437:CDS
AAGACTGGGGAGAGGGAGGT+GGG 0.385765 7.3:-26341257 None:intergenic
ACCTGAACAGGCCAACTAAC+AGG 0.386362 7.3:+26341423 MS.gene065437:CDS
GAGGATAAGAAGATGGAGTT+TGG 0.390964 7.3:-26340965 None:intergenic
ATTTGAAAGAAAGAGGTGTT+AGG 0.409873 7.3:+26341708 MS.gene065437:CDS
GAAAGAGATGGAGAGGGAGG+TGG 0.414641 7.3:+26341616 MS.gene065437:CDS
GGGAGAATGGTGTACTAGCC+GGG 0.414857 7.3:-26341210 None:intergenic
AGGTTTCTTGAGGAAGTGGT+TGG 0.416043 7.3:+26341494 MS.gene065437:CDS
GGAAGTGGAGGGTTGGTTTG+AGG 0.419169 7.3:-26341376 None:intergenic
GGGGATGTCGGCCTCGGTAA+AGG 0.429164 7.3:-26341189 None:intergenic
TGGTTGATGGTGTCCGGGTG+AGG 0.433668 7.3:-26341131 None:intergenic
AGAATGTGGTTGATGGTGTC+CGG 0.434058 7.3:-26341137 None:intergenic
TCTTTCAAATGCAAATGCCT+TGG 0.434972 7.3:-26341695 None:intergenic
CGAGGTTACCAACAATATTA+GGG 0.442831 7.3:+26341549 MS.gene065437:CDS
TTGTGAAGAGGCGGGGAGAA+TGG 0.444352 7.3:-26341223 None:intergenic
CAACTTCCTCGCGGAGGAAG+TGG 0.444919 7.3:-26341391 None:intergenic
GTGGCCGAAGTTTGTGTACT+TGG 0.446693 7.3:+26341592 MS.gene065437:CDS
GGGGAGAATGGTGTACTAGC+CGG 0.446736 7.3:-26341211 None:intergenic
CACTTCCTCCGCGAGGAAGT+TGG 0.448220 7.3:+26341392 MS.gene065437:CDS
GGTGAGGTTTCTTGAGGAAG+TGG 0.452000 7.3:+26341490 MS.gene065437:CDS
TTGGAGTTAGTAACCTGAAC+AGG 0.454578 7.3:+26341411 MS.gene065437:CDS
AACCGTTTCTGTTAGGATAA+CGG 0.454941 7.3:-26341019 None:intergenic
TGTGAGGGAGGATAAGAAGA+TGG 0.456359 7.3:-26340972 None:intergenic
AAGATGGAGTTTGGCGATGG+TGG 0.459760 7.3:-26340956 None:intergenic
CATTTGCATTTGAAAGAAAG+AGG 0.462822 7.3:+26341701 MS.gene065437:CDS
GATGGAGGTTGTGAAGAGGC+GGG 0.464546 7.3:-26341231 None:intergenic
GGTTTCTTGAGGAAGTGGTT+GGG 0.466379 7.3:+26341495 MS.gene065437:CDS
GGCGATGGTGGAAAGATTGG+AGG 0.476258 7.3:-26340944 None:intergenic
ACATCGTACCCTAATATTGT+TGG 0.480815 7.3:-26341557 None:intergenic
GGAAGGTGAAGACTGGGGAG+AGG 0.481924 7.3:-26341265 None:intergenic
GGTTAGGACAACGAAGGATA+AGG 0.485634 7.3:-26341328 None:intergenic
GAAGGTGAAGACTGGGGAGA+GGG 0.487078 7.3:-26341264 None:intergenic
GAGGCGAGGAAGGTGAAGAC+TGG 0.489734 7.3:-26341272 None:intergenic
AGGCGAGGAAGGTGAAGACT+GGG 0.491748 7.3:-26341271 None:intergenic
ACGTCGGTGAAGAGGAGGTT+AGG 0.495809 7.3:-26341344 None:intergenic
CGGTAAAGGAGTGGGATTTG+AGG 0.495981 7.3:-26341175 None:intergenic
AAGGAGGTCAGAGGCGAGGA+AGG 0.498210 7.3:-26341282 None:intergenic
GAGTTTGATGATTGTGAGGG+AGG 0.498646 7.3:-26340984 None:intergenic
GGTTGATGGTGTCCGGGTGA+GGG 0.506394 7.3:-26341130 None:intergenic
GATAGAGTTTGATGATTGTG+AGG 0.508310 7.3:-26340988 None:intergenic
AACCGTTATCCTAACAGAAA+CGG 0.513485 7.3:+26341017 MS.gene065437:CDS
ACCAAATAACCTCCCTCACC+CGG 0.515102 7.3:+26341118 MS.gene065437:CDS
TTACCGAGGCCGACATCCCC+CGG 0.518020 7.3:+26341192 MS.gene065437:CDS
AGAAGATGCGTGTGAGGGTG+AGG 0.520479 7.3:+26341474 MS.gene065437:CDS
AGATGCGCGTTCCTGTTAGT+TGG 0.527130 7.3:-26341434 None:intergenic
GATGGTGAGAATGTGGTTGA+TGG 0.530544 7.3:-26341144 None:intergenic
TTCACCAAGTACACAAACTT+CGG 0.532158 7.3:-26341596 None:intergenic
CACATCAACATTCTATTCAA+AGG 0.546735 7.3:-26341734 None:intergenic
ATAGAGTTTGATGATTGTGA+GGG 0.547384 7.3:-26340987 None:intergenic
TTTCTGTTAGGATAACGGTT+AGG 0.548102 7.3:-26341014 None:intergenic
ATGGAGGTTGTGAAGAGGCG+GGG 0.548580 7.3:-26341230 None:intergenic
TCGCGGAGGAAGTGGAGGGT+TGG 0.548697 7.3:-26341383 None:intergenic
GGTGAAAGAGATGGAGAGGG+AGG 0.550774 7.3:+26341613 MS.gene065437:CDS
CTTCCTCGCGGAGGAAGTGG+AGG 0.556212 7.3:-26341388 None:intergenic
GGGAGTCTTCCGCAGTGGCA+AGG 0.560284 7.3:-26341301 None:intergenic
TGGATAAGAGGATTGTTCCA+AGG 0.564449 7.3:+26341678 MS.gene065437:CDS
ACTTGGTGAAAGAGATGGAG+AGG 0.567697 7.3:+26341609 MS.gene065437:CDS
TGATGGTGTCCGGGTGAGGG+AGG 0.570198 7.3:-26341127 None:intergenic
CTTGGTGAAAGAGATGGAGA+GGG 0.574883 7.3:+26341610 MS.gene065437:CDS
CTTTGAATAGAATGTTGATG+TGG 0.576656 7.3:+26341735 MS.gene065437:CDS
GGGAGATGGAGGTTGTGAAG+AGG 0.577702 7.3:-26341235 None:intergenic
TTTGAATAGAATGTTGATGT+GGG 0.578021 7.3:+26341736 MS.gene065437:CDS
CGCAGTGGCAAGGAGGTCAG+AGG 0.578268 7.3:-26341291 None:intergenic
TGTCGGCCTCGGTAAAGGAG+TGG 0.583903 7.3:-26341184 None:intergenic
AAGAAGATGGAGTTTGGCGA+TGG 0.587419 7.3:-26340959 None:intergenic
TGTGGTTTACGTCGGTGAAG+AGG 0.589418 7.3:-26341352 None:intergenic
GAATGTGGTTGATGGTGTCC+GGG 0.591413 7.3:-26341136 None:intergenic
GTCGGCCTCGGTAAAGGAGT+GGG 0.594600 7.3:-26341183 None:intergenic
TGTGTACTTGGTGAAAGAGA+TGG 0.598582 7.3:+26341604 MS.gene065437:CDS
CTCTGACCTCCTTGCCACTG+CGG 0.599139 7.3:+26341292 MS.gene065437:CDS
GGATTTGAGGAATGTGATGA+TGG 0.599559 7.3:-26341162 None:intergenic
TGGCAAGGAGGTCAGAGGCG+AGG 0.599844 7.3:-26341286 None:intergenic
GGAGAATGGTGTACTAGCCG+GGG 0.603655 7.3:-26341209 None:intergenic
ATGATAAGTTCTATACAAAG+TGG 0.603721 7.3:+26341762 MS.gene065437:CDS
GACAACGAAGGATAAGGCCA+CGG 0.606326 7.3:-26341322 None:intergenic
AGTGGTTGGGTTTACGTACG+AGG 0.606381 7.3:+26341508 MS.gene065437:CDS
ACAACGAAGGATAAGGCCAC+GGG 0.608143 7.3:-26341321 None:intergenic
GGTTTACGTACGAGGAAGCG+AGG 0.621107 7.3:+26341516 MS.gene065437:CDS
GCCACTGCGGAAGACTCCCG+TGG 0.622634 7.3:+26341305 MS.gene065437:CDS
GGTTTACGTCGGTGAAGAGG+AGG 0.624023 7.3:-26341349 None:intergenic
TGTGAGGGTGAGGTTTCTTG+AGG 0.633117 7.3:+26341484 MS.gene065437:CDS
GTGTGGAGAAGATGCGTGTG+AGG 0.634460 7.3:+26341468 MS.gene065437:CDS
ATGTGATGATGGTGAGAATG+TGG 0.638295 7.3:-26341151 None:intergenic
AACAATATTAGGGTACGATG+TGG 0.647175 7.3:+26341559 MS.gene065437:CDS
AAGCGAGGAATGTTTGTGCG+AGG 0.648068 7.3:+26341531 MS.gene065437:CDS
TTTGAGGATGTGGTTTACGT+CGG 0.649863 7.3:-26341360 None:intergenic
TTCCTCGCGGAGGAAGTGGA+GGG 0.650738 7.3:-26341387 None:intergenic
GCCACGGGAGTCTTCCGCAG+TGG 0.657872 7.3:-26341306 None:intergenic
GGCGAGGAAGGTGAAGACTG+GGG 0.678511 7.3:-26341270 None:intergenic
GAGAATGGTGTACTAGCCGG+GGG 0.683453 7.3:-26341208 None:intergenic
AACCCTCCACTTCCTCCGCG+AGG 0.690297 7.3:+26341385 MS.gene065437:CDS
AGTCTTCCGCAGTGGCAAGG+AGG 0.696772 7.3:-26341298 None:intergenic
TGTGGAGAAGATGCGTGTGA+GGG 0.700087 7.3:+26341469 MS.gene065437:CDS
CAAATCCCACTCCTTTACCG+AGG 0.704396 7.3:+26341178 MS.gene065437:CDS
ACGATGTGGAGAATAACTTG+TGG 0.706381 7.3:+26341573 MS.gene065437:CDS
TACTAACTCCAACTTCCTCG+CGG 0.708475 7.3:-26341400 None:intergenic
GCATCTTCTCAACACACGTG+TGG 0.708861 7.3:+26341451 MS.gene065437:CDS
TTGAATAGAATGTTGATGTG+GGG 0.710612 7.3:+26341737 MS.gene065437:CDS
TAACTCCAACTTCCTCGCGG+AGG 0.712692 7.3:-26341397 None:intergenic
AGAGGAGGTTAGGACAACGA+AGG 0.736709 7.3:-26341334 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ATGATAAGTTCTATACAAAG+TGG + chr7.3:26341762-26341781 MS.gene065437:CDS 25.0%
! TTTGAATAGAATGTTGATGT+GGG + chr7.3:26341736-26341755 MS.gene065437:CDS 25.0%
!! TTATTATGGTTAGTGCTTTT+AGG - chr7.3:26341085-26341104 None:intergenic 25.0%
AAACTAAACCCAAAAAACTG+TGG - chr7.3:26341659-26341678 None:intergenic 30.0%
CACATCAACATTCTATTCAA+AGG - chr7.3:26341737-26341756 None:intergenic 30.0%
CATTTGCATTTGAAAGAAAG+AGG + chr7.3:26341701-26341720 MS.gene065437:CDS 30.0%
CTTTGAATAGAATGTTGATG+TGG + chr7.3:26341735-26341754 MS.gene065437:CDS 30.0%
TTGAATAGAATGTTGATGTG+GGG + chr7.3:26341737-26341756 MS.gene065437:CDS 30.0%
! ATAGAGTTTGATGATTGTGA+GGG - chr7.3:26340990-26341009 None:intergenic 30.0%
! TTTTGTGTTGGGGTTTATTA+TGG - chr7.3:26341099-26341118 None:intergenic 30.0%
!! ATTTGAAAGAAAGAGGTGTT+AGG + chr7.3:26341708-26341727 MS.gene065437:CDS 30.0%
!!! AAGAAGTTTCCACAGTTTTT+TGG + chr7.3:26341647-26341666 MS.gene065437:CDS 30.0%
!!! ACAGTTTTTTGGGTTTAGTT+TGG + chr7.3:26341658-26341677 MS.gene065437:CDS 30.0%
!!! AGAAGTTTCCACAGTTTTTT+GGG + chr7.3:26341648-26341667 MS.gene065437:CDS 30.0%
!!! AGGTTATTTGGTTTTGTGTT+GGG - chr7.3:26341110-26341129 None:intergenic 30.0%
AACAATATTAGGGTACGATG+TGG + chr7.3:26341559-26341578 MS.gene065437:CDS 35.0%
AACCGTTATCCTAACAGAAA+CGG + chr7.3:26341017-26341036 MS.gene065437:CDS 35.0%
AACCGTTTCTGTTAGGATAA+CGG - chr7.3:26341022-26341041 None:intergenic 35.0%
ACATCGTACCCTAATATTGT+TGG - chr7.3:26341560-26341579 None:intergenic 35.0%
CGAGGTTACCAACAATATTA+GGG + chr7.3:26341549-26341568 MS.gene065437:CDS 35.0%
TCTTTCAAATGCAAATGCCT+TGG - chr7.3:26341698-26341717 None:intergenic 35.0%
TTCACCAAGTACACAAACTT+CGG - chr7.3:26341599-26341618 None:intergenic 35.0%
TTGATGTAACCGTTTCTGTT+AGG - chr7.3:26341029-26341048 None:intergenic 35.0%
! GATAGAGTTTGATGATTGTG+AGG - chr7.3:26340991-26341010 None:intergenic 35.0%
! TTTCTGTTAGGATAACGGTT+AGG - chr7.3:26341017-26341036 None:intergenic 35.0%
!! TGGTTAGTGCTTTTAGGTAA+TGG - chr7.3:26341079-26341098 None:intergenic 35.0%
!! TTGGGTTTAGTTTGGATAAG+AGG + chr7.3:26341666-26341685 MS.gene065437:CDS 35.0%
!!! GAGGTTATTTGGTTTTGTGT+TGG - chr7.3:26341111-26341130 None:intergenic 35.0%
!!! GGTTATTTGGTTTTGTGTTG+GGG - chr7.3:26341109-26341128 None:intergenic 35.0%
ACGATGTGGAGAATAACTTG+TGG + chr7.3:26341573-26341592 MS.gene065437:CDS 40.0%
GAGGATAAGAAGATGGAGTT+TGG - chr7.3:26340968-26340987 None:intergenic 40.0%
GCGAGGTTACCAACAATATT+AGG + chr7.3:26341548-26341567 MS.gene065437:CDS 40.0%
GGATTTGAGGAATGTGATGA+TGG - chr7.3:26341165-26341184 None:intergenic 40.0%
TGGATAAGAGGATTGTTCCA+AGG + chr7.3:26341678-26341697 MS.gene065437:CDS 40.0%
TTGGAGTTAGTAACCTGAAC+AGG + chr7.3:26341411-26341430 MS.gene065437:CDS 40.0%
TTTGAGGATGTGGTTTACGT+CGG - chr7.3:26341363-26341382 None:intergenic 40.0%
! TGTGTACTTGGTGAAAGAGA+TGG + chr7.3:26341604-26341623 MS.gene065437:CDS 40.0%
!! ATGTGATGATGGTGAGAATG+TGG - chr7.3:26341154-26341173 None:intergenic 40.0%
AAGAAGATGGAGTTTGGCGA+TGG - chr7.3:26340962-26340981 None:intergenic 45.0%
AGGTTTCTTGAGGAAGTGGT+TGG + chr7.3:26341494-26341513 MS.gene065437:CDS 45.0%
CTTGGTGAAAGAGATGGAGA+GGG + chr7.3:26341610-26341629 MS.gene065437:CDS 45.0%
GATGGTGAGAATGTGGTTGA+TGG - chr7.3:26341147-26341166 None:intergenic 45.0%
GGTTAGGACAACGAAGGATA+AGG - chr7.3:26341331-26341350 None:intergenic 45.0%
GGTTTCTTGAGGAAGTGGTT+GGG + chr7.3:26341495-26341514 MS.gene065437:CDS 45.0%
TACTAACTCCAACTTCCTCG+CGG - chr7.3:26341403-26341422 None:intergenic 45.0%
TGTGAGGGAGGATAAGAAGA+TGG - chr7.3:26340975-26340994 None:intergenic 45.0%
! ACTTGGTGAAAGAGATGGAG+AGG + chr7.3:26341609-26341628 MS.gene065437:CDS 45.0%
! GAGTTTGATGATTGTGAGGG+AGG - chr7.3:26340987-26341006 None:intergenic 45.0%
!! AGAATGTGGTTGATGGTGTC+CGG - chr7.3:26341140-26341159 None:intergenic 45.0%
!! TTTGGCGATGGTGGAAAGAT+TGG - chr7.3:26340950-26340969 None:intergenic 45.0%
AAGATGGAGTTTGGCGATGG+TGG - chr7.3:26340959-26340978 None:intergenic 50.0%
AAGCGAGGAATGTTTGTGCG+AGG + chr7.3:26341531-26341550 MS.gene065437:CDS 50.0%
ACAACGAAGGATAAGGCCAC+GGG - chr7.3:26341324-26341343 None:intergenic 50.0%
ACCAAATAACCTCCCTCACC+CGG + chr7.3:26341118-26341137 MS.gene065437:CDS 50.0%
ACCTGAACAGGCCAACTAAC+AGG + chr7.3:26341423-26341442 MS.gene065437:CDS 50.0%
AGAGGAGGTTAGGACAACGA+AGG - chr7.3:26341337-26341356 None:intergenic 50.0%
AGATGCGCGTTCCTGTTAGT+TGG - chr7.3:26341437-26341456 None:intergenic 50.0%
AGATGGAGGTTGTGAAGAGG+CGG - chr7.3:26341235-26341254 None:intergenic 50.0%
AGTGGTTGGGTTTACGTACG+AGG + chr7.3:26341508-26341527 MS.gene065437:CDS 50.0%
CAAATCCCACTCCTTTACCG+AGG + chr7.3:26341178-26341197 MS.gene065437:CDS 50.0%
CGGTAAAGGAGTGGGATTTG+AGG - chr7.3:26341178-26341197 None:intergenic 50.0%
GACAACGAAGGATAAGGCCA+CGG - chr7.3:26341325-26341344 None:intergenic 50.0%
GCATCTTCTCAACACACGTG+TGG + chr7.3:26341451-26341470 MS.gene065437:CDS 50.0%
GGTGAGGTTTCTTGAGGAAG+TGG + chr7.3:26341490-26341509 MS.gene065437:CDS 50.0%
GTGGCCGAAGTTTGTGTACT+TGG + chr7.3:26341592-26341611 MS.gene065437:CDS 50.0%
TGTGAGGGTGAGGTTTCTTG+AGG + chr7.3:26341484-26341503 MS.gene065437:CDS 50.0%
TGTGGAGAAGATGCGTGTGA+GGG + chr7.3:26341469-26341488 MS.gene065437:CDS 50.0%
TGTGGTTTACGTCGGTGAAG+AGG - chr7.3:26341355-26341374 None:intergenic 50.0%
! TCCTGTTAGTTGGCCTGTTC+AGG - chr7.3:26341427-26341446 None:intergenic 50.0%
!! GAATGTGGTTGATGGTGTCC+GGG - chr7.3:26341139-26341158 None:intergenic 50.0%
ACGTCGGTGAAGAGGAGGTT+AGG - chr7.3:26341347-26341366 None:intergenic 55.0%
AGAAGATGCGTGTGAGGGTG+AGG + chr7.3:26341474-26341493 MS.gene065437:CDS 55.0%
AGGCGAGGAAGGTGAAGACT+GGG - chr7.3:26341274-26341293 None:intergenic 55.0%
ATGGAGGTTGTGAAGAGGCG+GGG - chr7.3:26341233-26341252 None:intergenic 55.0%
GAAAGAGATGGAGAGGGAGG+TGG + chr7.3:26341616-26341635 MS.gene065437:CDS 55.0%
GAAGGTGAAGACTGGGGAGA+GGG - chr7.3:26341267-26341286 None:intergenic 55.0%
GAGAATGGTGTACTAGCCGG+GGG - chr7.3:26341211-26341230 None:intergenic 55.0%
GATGGAGGTTGTGAAGAGGC+GGG - chr7.3:26341234-26341253 None:intergenic 55.0%
GGAGAATGGTGTACTAGCCG+GGG - chr7.3:26341212-26341231 None:intergenic 55.0%
GGGAGAATGGTGTACTAGCC+GGG - chr7.3:26341213-26341232 None:intergenic 55.0%
GGGAGATGGAGGTTGTGAAG+AGG - chr7.3:26341238-26341257 None:intergenic 55.0%
GGGGAGAATGGTGTACTAGC+CGG - chr7.3:26341214-26341233 None:intergenic 55.0%
GGTGAAAGAGATGGAGAGGG+AGG + chr7.3:26341613-26341632 MS.gene065437:CDS 55.0%
GGTTTACGTACGAGGAAGCG+AGG + chr7.3:26341516-26341535 MS.gene065437:CDS 55.0%
GGTTTACGTCGGTGAAGAGG+AGG - chr7.3:26341352-26341371 None:intergenic 55.0%
GTGTGGAGAAGATGCGTGTG+AGG + chr7.3:26341468-26341487 MS.gene065437:CDS 55.0%
TAACTCCAACTTCCTCGCGG+AGG - chr7.3:26341400-26341419 None:intergenic 55.0%
TCCGGGTGAGGGAGGTTATT+TGG - chr7.3:26341122-26341141 None:intergenic 55.0%
TTGTGAAGAGGCGGGGAGAA+TGG - chr7.3:26341226-26341245 None:intergenic 55.0%
!! GGAAGTGGAGGGTTGGTTTG+AGG - chr7.3:26341379-26341398 None:intergenic 55.0%
!! GGAGGGTTGGTTTGAGGATG+TGG - chr7.3:26341373-26341392 None:intergenic 55.0%
!! GGCGATGGTGGAAAGATTGG+AGG - chr7.3:26340947-26340966 None:intergenic 55.0%
AAGACTGGGGAGAGGGAGGT+GGG - chr7.3:26341260-26341279 None:intergenic 60.0%
AAGGAGGTCAGAGGCGAGGA+AGG - chr7.3:26341285-26341304 None:intergenic 60.0%
AGTCTTCCGCAGTGGCAAGG+AGG - chr7.3:26341301-26341320 None:intergenic 60.0%
CAACTTCCTCGCGGAGGAAG+TGG - chr7.3:26341394-26341413 None:intergenic 60.0%
CACTTCCTCCGCGAGGAAGT+TGG + chr7.3:26341392-26341411 MS.gene065437:CDS 60.0%
CTCTGACCTCCTTGCCACTG+CGG + chr7.3:26341292-26341311 MS.gene065437:CDS 60.0%
GAGGCGAGGAAGGTGAAGAC+TGG - chr7.3:26341275-26341294 None:intergenic 60.0%
GGAAGGTGAAGACTGGGGAG+AGG - chr7.3:26341268-26341287 None:intergenic 60.0%
GGCGAGGAAGGTGAAGACTG+GGG - chr7.3:26341273-26341292 None:intergenic 60.0%
GTCGGCCTCGGTAAAGGAGT+GGG - chr7.3:26341186-26341205 None:intergenic 60.0%
GTGTACTAGCCGGGGGATGT+CGG - chr7.3:26341204-26341223 None:intergenic 60.0%
TGTCGGCCTCGGTAAAGGAG+TGG - chr7.3:26341187-26341206 None:intergenic 60.0%
TTCCTCGCGGAGGAAGTGGA+GGG - chr7.3:26341390-26341409 None:intergenic 60.0%
!! GGTTGATGGTGTCCGGGTGA+GGG - chr7.3:26341133-26341152 None:intergenic 60.0%
!! TGGTTGATGGTGTCCGGGTG+AGG - chr7.3:26341134-26341153 None:intergenic 60.0%
AACCCTCCACTTCCTCCGCG+AGG + chr7.3:26341385-26341404 MS.gene065437:CDS 65.0%
AGACTGGGGAGAGGGAGGTG+GGG - chr7.3:26341259-26341278 None:intergenic 65.0%
CGCAGTGGCAAGGAGGTCAG+AGG - chr7.3:26341294-26341313 None:intergenic 65.0%
CTTCCTCGCGGAGGAAGTGG+AGG - chr7.3:26341391-26341410 None:intergenic 65.0%
GAAGACTGGGGAGAGGGAGG+TGG - chr7.3:26341261-26341280 None:intergenic 65.0%
GGGAGTCTTCCGCAGTGGCA+AGG - chr7.3:26341304-26341323 None:intergenic 65.0%
GGGGATGTCGGCCTCGGTAA+AGG - chr7.3:26341192-26341211 None:intergenic 65.0%
GGTGAAGACTGGGGAGAGGG+AGG - chr7.3:26341264-26341283 None:intergenic 65.0%
TCGCGGAGGAAGTGGAGGGT+TGG - chr7.3:26341386-26341405 None:intergenic 65.0%
TGGCAAGGAGGTCAGAGGCG+AGG - chr7.3:26341289-26341308 None:intergenic 65.0%
TTACCGAGGCCGACATCCCC+CGG + chr7.3:26341192-26341211 MS.gene065437:CDS 65.0%
! TGATGGTGTCCGGGTGAGGG+AGG - chr7.3:26341130-26341149 None:intergenic 65.0%
GACTGGGGAGAGGGAGGTGG+GGG - chr7.3:26341258-26341277 None:intergenic 70.0%
GAGGGAGGTGGGGGAGATGG+AGG - chr7.3:26341249-26341268 None:intergenic 70.0%
GCCACGGGAGTCTTCCGCAG+TGG - chr7.3:26341309-26341328 None:intergenic 70.0%
GCCACTGCGGAAGACTCCCG+TGG + chr7.3:26341305-26341324 MS.gene065437:CDS 70.0%
GGAGAGGGAGGTGGGGGAGA+TGG - chr7.3:26341252-26341271 None:intergenic 70.0%
TAGCCGGGGGATGTCGGCCT+CGG - chr7.3:26341198-26341217 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 26340936 26341790 26340936 ID=MS.gene065437
chr7.3 mRNA 26340936 26341790 26340936 ID=MS.gene065437.t1;Parent=MS.gene065437
chr7.3 exon 26340936 26341790 26340936 ID=MS.gene065437.t1.exon1;Parent=MS.gene065437.t1
chr7.3 CDS 26340936 26341790 26340936 ID=cds.MS.gene065437.t1;Parent=MS.gene065437.t1
Gene Sequence

>MS.gene065437

ATGTTCTTCCTCCAATCTTTCCACCATCGCCAAACTCCATCTTCTTATCCTCCCTCACAATCATCAAACTCTATCGTACCTAACCGTTATCCTAACAGAAACGGTTACATCAAGTTCAGAACAATCTACAATGAAAATCTCCATTACCTAAAAGCACTAACCATAATAAACCCCAACACAAAACCAAATAACCTCCCTCACCCGGACACCATCAACCACATTCTCACCATCATCACATTCCTCAAATCCCACTCCTTTACCGAGGCCGACATCCCCCGGCTAGTACACCATTCTCCCCGCCTCTTCACAACCTCCATCTCCCCCACCTCCCTCTCCCCAGTCTTCACCTTCCTCGCCTCTGACCTCCTTGCCACTGCGGAAGACTCCCGTGGCCTTATCCTTCGTTGTCCTAACCTCCTCTTCACCGACGTAAACCACATCCTCAAACCAACCCTCCACTTCCTCCGCGAGGAAGTTGGAGTTAGTAACCTGAACAGGCCAACTAACAGGAACGCGCATCTTCTCAACACACGTGTGGAGAAGATGCGTGTGAGGGTGAGGTTTCTTGAGGAAGTGGTTGGGTTTACGTACGAGGAAGCGAGGAATGTTTGTGCGAGGTTACCAACAATATTAGGGTACGATGTGGAGAATAACTTGTGGCCGAAGTTTGTGTACTTGGTGAAAGAGATGGAGAGGGAGGTGGAAGAGTTGAAGAAGTTTCCACAGTTTTTTGGGTTTAGTTTGGATAAGAGGATTGTTCCAAGGCATTTGCATTTGAAAGAAAGAGGTGTTAGGATTCCTTTGAATAGAATGTTGATGTGGGGTGATGATAAGTTCTATACAAAGTGGAAGTGA
Protein sequence

>MS.gene065437.t1

MFFLQSFHHRQTPSSYPPSQSSNSIVPNRYPNRNGYIKFRTIYNENLHYLKALTIINPNTKPNNLPHPDTINHILTIITFLKSHSFTEADIPRLVHHSPRLFTTSISPTSLSPVFTFLASDLLATAEDSRGLILRCPNLLFTDVNHILKPTLHFLREEVGVSNLNRPTNRNAHLLNTRVEKMRVRVRFLEEVVGFTYEEARNVCARLPTILGYDVENNLWPKFVYLVKEMEREVEELKKFPQFFGFSLDKRIVPRHLHLKERGVRIPLNRMLMWGDDKFYTKWK