Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065443.t1 | XP_024626779.1 | 74.5 | 361 | 43 | 7 | 1 | 315 | 1 | 358 | 9.60E-86 | 327 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065443.t1 | Q9LJG8 | 35.1 | 94 | 55 | 3 | 43 | 136 | 83 | 170 | 1.3e-09 | 65.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065443.t1 | A2Q1W1 | 83.9 | 299 | 38 | 5 | 1 | 292 | 1 | 296 | 8.5e-84 | 320.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene065443.t1 | TF | Trihelix |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065443.t1 | MTR_7g081190 | 82.353 | 323 | 10 | 4 | 37 | 315 | 39 | 358 | 2.31e-121 | 354 |
| MS.gene065443.t1 | MTR_4g117990 | 47.403 | 308 | 97 | 10 | 35 | 303 | 35 | 316 | 6.67e-62 | 200 |
| MS.gene065443.t1 | MTR_5g017500 | 45.926 | 135 | 61 | 4 | 23 | 156 | 8 | 131 | 7.98e-27 | 105 |
| MS.gene065443.t1 | MTR_4g079960 | 41.000 | 100 | 48 | 4 | 15 | 111 | 8 | 99 | 3.51e-13 | 69.3 |
| MS.gene065443.t1 | MTR_4g079960 | 35.211 | 142 | 78 | 6 | 15 | 153 | 8 | 138 | 3.73e-13 | 69.3 |
| MS.gene065443.t1 | MTR_4g079960 | 41.000 | 100 | 48 | 4 | 15 | 111 | 8 | 99 | 6.54e-13 | 68.6 |
| MS.gene065443.t1 | MTR_2g016140 | 27.103 | 107 | 75 | 1 | 32 | 138 | 11 | 114 | 2.38e-11 | 63.9 |
| MS.gene065443.t1 | MTR_1g061600 | 34.951 | 103 | 59 | 3 | 44 | 146 | 133 | 227 | 2.41e-11 | 64.7 |
| MS.gene065443.t1 | MTR_2g016140 | 27.103 | 107 | 75 | 1 | 32 | 138 | 11 | 114 | 2.59e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065443.t1 | AT2G44730 | 39.093 | 353 | 124 | 10 | 26 | 313 | 46 | 372 | 3.79e-52 | 176 |
| MS.gene065443.t1 | AT3G24860 | 37.037 | 135 | 69 | 4 | 29 | 159 | 50 | 172 | 6.08e-22 | 94.4 |
| MS.gene065443.t1 | AT3G14180 | 29.197 | 137 | 87 | 4 | 6 | 138 | 42 | 172 | 4.62e-14 | 72.8 |
| MS.gene065443.t1 | AT3G58630 | 32.374 | 139 | 80 | 4 | 30 | 159 | 15 | 148 | 3.58e-12 | 66.6 |
| MS.gene065443.t1 | AT3G58630 | 32.374 | 139 | 80 | 4 | 30 | 159 | 15 | 148 | 3.61e-12 | 66.6 |
| MS.gene065443.t1 | AT3G10030 | 32.632 | 95 | 57 | 2 | 44 | 138 | 161 | 248 | 1.20e-11 | 65.9 |
| MS.gene065443.t1 | AT3G10030 | 32.632 | 95 | 57 | 2 | 44 | 138 | 161 | 248 | 1.24e-11 | 65.9 |
| MS.gene065443.t1 | AT3G54390 | 33.628 | 113 | 63 | 3 | 38 | 149 | 32 | 133 | 4.30e-11 | 63.2 |
| MS.gene065443.t1 | AT3G54390 | 33.628 | 113 | 63 | 3 | 38 | 149 | 48 | 149 | 5.14e-11 | 63.2 |
Find 103 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGTTGGTGGTGGTGGTGC+TGG | 0.178332 | 7.3:-26401800 | None:intergenic |
| CCGGTGGTGGGTTTCGGATT+AGG | 0.234801 | 7.3:+26402374 | MS.gene065443:CDS |
| CTTCAAAGCTATGGATTCTA+TGG | 0.250239 | 7.3:+26402111 | MS.gene065443:CDS |
| TATGGATATGATTATGATTA+GGG | 0.250658 | 7.3:-26402177 | None:intergenic |
| TGAAATGGTGAATGCTATTA+AGG | 0.263524 | 7.3:+26402573 | MS.gene065443:CDS |
| AGCGCTGCGGGTGGTGGTTC+TGG | 0.286831 | 7.3:+26402277 | MS.gene065443:CDS |
| GCGGGTGGTGGTTCTGGTTC+TGG | 0.287442 | 7.3:+26402283 | MS.gene065443:CDS |
| AAAATGAACAATTCAGAATC+TGG | 0.292564 | 7.3:+26402445 | MS.gene065443:CDS |
| CTATGGATATGATTATGATT+AGG | 0.304409 | 7.3:-26402178 | None:intergenic |
| GTGTTTCACGGTGGTTAATA+AGG | 0.308149 | 7.3:-26402207 | None:intergenic |
| CACGGTGGTTAATAAGGTTA+TGG | 0.312262 | 7.3:-26402201 | None:intergenic |
| AGGTTGGTGGTGGTGGTGCT+GGG | 0.313697 | 7.3:-26401799 | None:intergenic |
| GGTGGTGCTGGGAGGGAAAG+AGG | 0.321617 | 7.3:-26401788 | None:intergenic |
| TCCGTTGGTTCGGGTGGTTT+TGG | 0.326308 | 7.3:+26402346 | MS.gene065443:CDS |
| GTGGTTCCGGTGGTGGGTTT+CGG | 0.326675 | 7.3:+26402368 | MS.gene065443:CDS |
| TTGGTGGTGGTGGTGCTGGG+AGG | 0.341538 | 7.3:-26401796 | None:intergenic |
| AATGGAGTTTCCGTTGGTTC+GGG | 0.343762 | 7.3:+26402337 | MS.gene065443:CDS |
| GAATGGAGTTTCCGTTGGTT+CGG | 0.350890 | 7.3:+26402336 | MS.gene065443:CDS |
| CGTTCAGTGTCGTCACAAAA+TGG | 0.351174 | 7.3:+26402000 | MS.gene065443:CDS |
| AGAGAGAGGGAGAGAGAGAA+AGG | 0.353171 | 7.3:+26402533 | MS.gene065443:CDS |
| ATCTGCAACTTCTTGCCAAT+GGG | 0.370295 | 7.3:-26401930 | None:intergenic |
| TCTCAGATCGATAACGTTTA+CGG | 0.384665 | 7.3:-26402030 | None:intergenic |
| GCATTCACCATTTCACCAAT+TGG | 0.387583 | 7.3:-26402565 | None:intergenic |
| TTAGCGACGGGTGAAGCGTT+AGG | 0.398115 | 7.3:-26401971 | None:intergenic |
| TGGTGGTGGTGGTGCTGGGA+GGG | 0.406759 | 7.3:-26401795 | None:intergenic |
| GAAGAGAGAGAGGGAGAGAG+AGG | 0.408329 | 7.3:+26402519 | MS.gene065443:CDS |
| ATCAGAGCAGAAGTTTCTTC+CGG | 0.420804 | 7.3:-26401854 | None:intergenic |
| GTATAGCTTATCAAGACTTC+TGG | 0.422110 | 7.3:-26402311 | None:intergenic |
| ATCTCGTTCTTCTTCTTCGT+GGG | 0.425078 | 7.3:+26402084 | MS.gene065443:CDS |
| GTGGGTTCTCTTCAAAGCTA+TGG | 0.427834 | 7.3:+26402102 | MS.gene065443:CDS |
| CGAGATGAGGTTGGTGGTGG+TGG | 0.430206 | 7.3:-26401806 | None:intergenic |
| TCCGGTGTCCAGCACGGTGG+TGG | 0.436860 | 7.3:-26401836 | None:intergenic |
| CTTAGAAGCGCTGCGGGTGG+TGG | 0.446289 | 7.3:+26402271 | MS.gene065443:CDS |
| GATCTCGTTCTTCTTCTTCG+TGG | 0.446498 | 7.3:+26402083 | MS.gene065443:CDS |
| TTGTGTTGGGGAAGAGAGAG+AGG | 0.447145 | 7.3:+26402509 | MS.gene065443:CDS |
| AAGAGAGAGAGGGAGAGAGA+GGG | 0.448119 | 7.3:+26402520 | MS.gene065443:CDS |
| CGTCGTTATTTAGTGTTTCA+CGG | 0.450882 | 7.3:-26402219 | None:intergenic |
| GCCGTCTTCCACCACCGTGC+TGG | 0.451370 | 7.3:+26401828 | MS.gene065443:CDS |
| AAGAGATCCAATTGGTGAAA+TGG | 0.455113 | 7.3:+26402558 | MS.gene065443:CDS |
| GAGAGAGGGAGAGAGAGAAA+GGG | 0.459187 | 7.3:+26402534 | MS.gene065443:CDS |
| GTGGTGCTGGGAGGGAAAGA+GGG | 0.460638 | 7.3:-26401787 | None:intergenic |
| TGGTGGAACAAGGCTTGTTA+AGG | 0.460822 | 7.3:+26402480 | MS.gene065443:CDS |
| GAAGAACGAGATCTCGGAAC+AGG | 0.461981 | 7.3:-26402073 | None:intergenic |
| TAGCGACGGGTGAAGCGTTA+GGG | 0.470209 | 7.3:-26401970 | None:intergenic |
| CATCTGCAACTTCTTGCCAA+TGG | 0.473979 | 7.3:-26401931 | None:intergenic |
| GGGTTGCTTTGAGATTTGTT+CGG | 0.481001 | 7.3:-26401910 | None:intergenic |
| GGTACGGCTGATGGTGGTGA+TGG | 0.482216 | 7.3:-26401761 | None:intergenic |
| ACCAAAACCACCCGAACCAA+CGG | 0.485996 | 7.3:-26402347 | None:intergenic |
| GGTTAATAAGGTTATGGCTA+TGG | 0.487606 | 7.3:-26402195 | None:intergenic |
| TGATGATGATGATCTTTATG+AGG | 0.488793 | 7.3:+26402246 | MS.gene065443:CDS |
| ATCGATTCTGTTGGAGAAGA+TGG | 0.489057 | 7.3:-26401737 | None:intergenic |
| GTTAAGGAGAGAGTTGTGTT+GGG | 0.490506 | 7.3:+26402496 | MS.gene065443:CDS |
| TGTTAAGGAGAGAGTTGTGT+TGG | 0.492890 | 7.3:+26402495 | MS.gene065443:CDS |
| AAATGAACAATTCAGAATCT+GGG | 0.505187 | 7.3:+26402446 | MS.gene065443:CDS |
| TCTGGTTTATGCGGTGGAGA+AGG | 0.505466 | 7.3:-26402151 | None:intergenic |
| ACAATTCAGAATCTGGGTCT+AGG | 0.507620 | 7.3:+26402452 | MS.gene065443:CDS |
| TACCGGAATGGAGTTTCCGT+TGG | 0.514253 | 7.3:+26402331 | MS.gene065443:CDS |
| TGCGCCACGCTTACACCCGT+TGG | 0.515491 | 7.3:-26402400 | None:intergenic |
| AACCAACGGAAACTCCATTC+CGG | 0.515612 | 7.3:-26402333 | None:intergenic |
| AGAGGGAGAGGTACGGCTGA+TGG | 0.518443 | 7.3:-26401770 | None:intergenic |
| GAATCTGGGTCTAGGATCAA+TGG | 0.522025 | 7.3:+26402460 | MS.gene065443:CDS |
| GGAGTTTCCGTTGGTTCGGG+TGG | 0.526803 | 7.3:+26402340 | MS.gene065443:CDS |
| TCCACCACCGTGCTGGACAC+CGG | 0.527476 | 7.3:+26401835 | MS.gene065443:CDS |
| GAGGAACTTAGAAGCGCTGC+GGG | 0.530673 | 7.3:+26402265 | MS.gene065443:CDS |
| TCCAGCACGGTGGTGGAAGA+CGG | 0.531155 | 7.3:-26401829 | None:intergenic |
| GAAAGGGAAAGAGATCCAAT+TGG | 0.539477 | 7.3:+26402550 | MS.gene065443:CDS |
| GAAGTCTTGATAAGCTATAC+CGG | 0.544701 | 7.3:+26402314 | MS.gene065443:CDS |
| GCTGGGAGGGAAAGAGGGAG+AGG | 0.546456 | 7.3:-26401782 | None:intergenic |
| CGGCGAGATGAGGTTGGTGG+TGG | 0.548164 | 7.3:-26401809 | None:intergenic |
| GTTTCGGATTAGGATTCCAA+CGG | 0.549612 | 7.3:+26402384 | MS.gene065443:CDS |
| GCTATGGATTCTATGGAGAA+AGG | 0.554265 | 7.3:+26402118 | MS.gene065443:CDS |
| TTAAGGAGAGAGTTGTGTTG+GGG | 0.559890 | 7.3:+26402497 | MS.gene065443:CDS |
| TTTCGGATTAGGATTCCAAC+GGG | 0.561959 | 7.3:+26402385 | MS.gene065443:CDS |
| GAAGAAGAAGAACGAGATCT+CGG | 0.565455 | 7.3:-26402079 | None:intergenic |
| TGCGGTGGAGAAGGAGGAGA+AGG | 0.574396 | 7.3:-26402142 | None:intergenic |
| CAAATCTCAAAGCAACCCAT+TGG | 0.579861 | 7.3:+26401915 | MS.gene065443:CDS |
| GAGGGAAAGAGGGAGAGGTA+CGG | 0.580802 | 7.3:-26401777 | None:intergenic |
| GGTGTAAGCGTGGCGCAACC+CGG | 0.584893 | 7.3:+26402406 | MS.gene065443:CDS |
| CTTGATAAGCTATACCGGAA+TGG | 0.585220 | 7.3:+26402319 | MS.gene065443:CDS |
| CTAGGATCAATGGTGGAACA+AGG | 0.587512 | 7.3:+26402470 | MS.gene065443:CDS |
| GTACGGCTGATGGTGGTGAT+GGG | 0.588413 | 7.3:-26401760 | None:intergenic |
| GGTTTATGCGGTGGAGAAGG+AGG | 0.594549 | 7.3:-26402148 | None:intergenic |
| TGTGTTGGGGAAGAGAGAGA+GGG | 0.597007 | 7.3:+26402510 | MS.gene065443:CDS |
| TTTCGGAGAAGAACAAGAAG+AGG | 0.600983 | 7.3:+26402743 | MS.gene065443:CDS |
| TGGTGGAAGACGGCGAGATG+AGG | 0.605549 | 7.3:-26401819 | None:intergenic |
| CCTAATCCGAAACCCACCAC+CGG | 0.609435 | 7.3:-26402374 | None:intergenic |
| GTTTCTTCCGGTGTCCAGCA+CGG | 0.611210 | 7.3:-26401842 | None:intergenic |
| GGAAGACGGCGAGATGAGGT+TGG | 0.615913 | 7.3:-26401815 | None:intergenic |
| GATTCCAACGGGTGTAAGCG+TGG | 0.625455 | 7.3:+26402396 | MS.gene065443:CDS |
| AGACGGCGAGATGAGGTTGG+TGG | 0.626962 | 7.3:-26401812 | None:intergenic |
| TGGTGGTGGTGATGTTGCCA+TGG | 0.630730 | 7.3:-26401717 | None:intergenic |
| CAAGAAGAGGAAACTACGCA+AGG | 0.633025 | 7.3:+26402756 | MS.gene065443:CDS |
| GGGAGAGGTACGGCTGATGG+TGG | 0.634889 | 7.3:-26401767 | None:intergenic |
| GAACTTAGAAGCGCTGCGGG+TGG | 0.634991 | 7.3:+26402268 | MS.gene065443:CDS |
| GGTGATGGGATCGATTCTGT+TGG | 0.635621 | 7.3:-26401746 | None:intergenic |
| GTTAGGGCAACGAACAGCGA+CGG | 0.651606 | 7.3:-26401954 | None:intergenic |
| TGAGGAACTTAGAAGCGCTG+CGG | 0.656102 | 7.3:+26402264 | MS.gene065443:CDS |
| TCTGGGTCTAGGATCAATGG+TGG | 0.665360 | 7.3:+26402463 | MS.gene065443:CDS |
| TCTGTTGGAGAAGATGGTGG+TGG | 0.666197 | 7.3:-26401731 | None:intergenic |
| AAGAAGAGGAAACTACGCAA+GGG | 0.675959 | 7.3:+26402757 | MS.gene065443:CDS |
| TCTTCCGGTGTCCAGCACGG+TGG | 0.693283 | 7.3:-26401839 | None:intergenic |
| GATTCTGTTGGAGAAGATGG+TGG | 0.716177 | 7.3:-26401734 | None:intergenic |
| CGTTATTTAGTGTTTCACGG+TGG | 0.748281 | 7.3:-26402216 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAAACTAAACTAGT+TGG | - | chr7.3:26402977-26402996 | None:intergenic | 15.0% |
| !!! | ACTAGTTTAGTTTTTATTTT+AGG | + | chr7.3:26402977-26402996 | MS.gene065443:intron | 15.0% |
| !! | TATGGATATGATTATGATTA+GGG | - | chr7.3:26402180-26402199 | None:intergenic | 20.0% |
| !!! | AAAAACATGATTTTATCTCA+TGG | - | chr7.3:26402953-26402972 | None:intergenic | 20.0% |
| !!! | AAAACATGATTTTATCTCAT+GGG | - | chr7.3:26402952-26402971 | None:intergenic | 20.0% |
| !!! | GTTTAGTTTTTATTTTAGGT+AGG | + | chr7.3:26402981-26403000 | MS.gene065443:intron | 20.0% |
| ! | AAAATCCATATAGTCAATAG+TGG | + | chr7.3:26402878-26402897 | MS.gene065443:intron | 25.0% |
| ! | AAAATGAACAATTCAGAATC+TGG | + | chr7.3:26402445-26402464 | MS.gene065443:CDS | 25.0% |
| ! | AAATGAACAATTCAGAATCT+GGG | + | chr7.3:26402446-26402465 | MS.gene065443:CDS | 25.0% |
| ! | CTATGGATATGATTATGATT+AGG | - | chr7.3:26402181-26402200 | None:intergenic | 25.0% |
| !! | AAACATGATTTTATCTCATG+GGG | - | chr7.3:26402951-26402970 | None:intergenic | 25.0% |
| !! | GATTCTGAATTGTTCATTTT+TGG | - | chr7.3:26402445-26402464 | None:intergenic | 25.0% |
| !!! | TTTTGGATAGAATTTTGATC+CGG | - | chr7.3:26402428-26402447 | None:intergenic | 25.0% |
| TGAAATGGTGAATGCTATTA+AGG | + | chr7.3:26402573-26402592 | MS.gene065443:CDS | 30.0% | |
| ! | AACATGATTTTATCTCATGG+GGG | - | chr7.3:26402950-26402969 | None:intergenic | 30.0% |
| ! | TGATGATGATGATCTTTATG+AGG | + | chr7.3:26402246-26402265 | MS.gene065443:CDS | 30.0% |
| ! | TGATTATGATTAGGGTTTTC+TGG | - | chr7.3:26402172-26402191 | None:intergenic | 30.0% |
| !! | TTTGGATAGAATTTTGATCC+GGG | - | chr7.3:26402427-26402446 | None:intergenic | 30.0% |
| !!! | CTATTAAGGTTTTGAGAGAT+GGG | + | chr7.3:26402587-26402606 | MS.gene065443:intron | 30.0% |
| AAGAGATCCAATTGGTGAAA+TGG | + | chr7.3:26402558-26402577 | MS.gene065443:CDS | 35.0% | |
| AGAGATTGAAACTATGCGTA+TGG | + | chr7.3:26402648-26402667 | MS.gene065443:intron | 35.0% | |
| ATCCATATAGTCAATAGTGG+TGG | + | chr7.3:26402881-26402900 | MS.gene065443:intron | 35.0% | |
| CGTCGTTATTTAGTGTTTCA+CGG | - | chr7.3:26402222-26402241 | None:intergenic | 35.0% | |
| CTTCAAAGCTATGGATTCTA+TGG | + | chr7.3:26402111-26402130 | MS.gene065443:CDS | 35.0% | |
| GAAGTCTTGATAAGCTATAC+CGG | + | chr7.3:26402314-26402333 | MS.gene065443:CDS | 35.0% | |
| GGTTAATAAGGTTATGGCTA+TGG | - | chr7.3:26402198-26402217 | None:intergenic | 35.0% | |
| GTATAGCTTATCAAGACTTC+TGG | - | chr7.3:26402314-26402333 | None:intergenic | 35.0% | |
| TCTCAGATCGATAACGTTTA+CGG | - | chr7.3:26402033-26402052 | None:intergenic | 35.0% | |
| ! | GGATTTTTCTACGATTCTGA+GGG | - | chr7.3:26402865-26402884 | None:intergenic | 35.0% |
| ! | TACCACCACTATTGACTATA+TGG | - | chr7.3:26402886-26402905 | None:intergenic | 35.0% |
| ! | TGGATTTTTCTACGATTCTG+AGG | - | chr7.3:26402866-26402885 | None:intergenic | 35.0% |
| !!! | GCTATTAAGGTTTTGAGAGA+TGG | + | chr7.3:26402586-26402605 | MS.gene065443:intron | 35.0% |
| !!! | TTAGGGTTTTCTGGTTTATG+CGG | - | chr7.3:26402163-26402182 | None:intergenic | 35.0% |
| AAGAAGAGGAAACTACGCAA+GGG | + | chr7.3:26402757-26402776 | MS.gene065443:CDS | 40.0% | |
| ACAATTCAGAATCTGGGTCT+AGG | + | chr7.3:26402452-26402471 | MS.gene065443:CDS | 40.0% | |
| ATCAGAGCAGAAGTTTCTTC+CGG | - | chr7.3:26401857-26401876 | None:intergenic | 40.0% | |
| ATCTCGTTCTTCTTCTTCGT+GGG | + | chr7.3:26402084-26402103 | MS.gene065443:CDS | 40.0% | |
| ATCTGCAACTTCTTGCCAAT+GGG | - | chr7.3:26401933-26401952 | None:intergenic | 40.0% | |
| CAAATCTCAAAGCAACCCAT+TGG | + | chr7.3:26401915-26401934 | MS.gene065443:CDS | 40.0% | |
| CACGGTGGTTAATAAGGTTA+TGG | - | chr7.3:26402204-26402223 | None:intergenic | 40.0% | |
| CGCGAAAAATGGTATTCTCT+CGG | + | chr7.3:26401887-26401906 | MS.gene065443:CDS | 40.0% | |
| CGTTATTTAGTGTTTCACGG+TGG | - | chr7.3:26402219-26402238 | None:intergenic | 40.0% | |
| CTTGATAAGCTATACCGGAA+TGG | + | chr7.3:26402319-26402338 | MS.gene065443:CDS | 40.0% | |
| GAAAGGGAAAGAGATCCAAT+TGG | + | chr7.3:26402550-26402569 | MS.gene065443:CDS | 40.0% | |
| GAAGAAGAAGAACGAGATCT+CGG | - | chr7.3:26402082-26402101 | None:intergenic | 40.0% | |
| GCATTCACCATTTCACCAAT+TGG | - | chr7.3:26402568-26402587 | None:intergenic | 40.0% | |
| GCTATGGATTCTATGGAGAA+AGG | + | chr7.3:26402118-26402137 | MS.gene065443:CDS | 40.0% | |
| GTGTTTCACGGTGGTTAATA+AGG | - | chr7.3:26402210-26402229 | None:intergenic | 40.0% | |
| GTTAAGGAGAGAGTTGTGTT+GGG | + | chr7.3:26402496-26402515 | MS.gene065443:CDS | 40.0% | |
| TGAAACTATGCGTATGGAGA+TGG | + | chr7.3:26402654-26402673 | MS.gene065443:intron | 40.0% | |
| TGTTAAGGAGAGAGTTGTGT+TGG | + | chr7.3:26402495-26402514 | MS.gene065443:CDS | 40.0% | |
| TTAAGGAGAGAGTTGTGTTG+GGG | + | chr7.3:26402497-26402516 | MS.gene065443:CDS | 40.0% | |
| TTTCGGAGAAGAACAAGAAG+AGG | + | chr7.3:26402743-26402762 | MS.gene065443:CDS | 40.0% | |
| ! | AGCTTTTGCGAAAGCTGTTT+CGG | + | chr7.3:26402726-26402745 | MS.gene065443:CDS | 40.0% |
| ! | ATCGATTCTGTTGGAGAAGA+TGG | - | chr7.3:26401740-26401759 | None:intergenic | 40.0% |
| ! | CATTTTGTGACGACACTGAA+CGG | - | chr7.3:26402002-26402021 | None:intergenic | 40.0% |
| ! | GAAGCGTACTGAGATGATTT+TGG | + | chr7.3:26402681-26402700 | MS.gene065443:intron | 40.0% |
| ! | GTTTCGGATTAGGATTCCAA+CGG | + | chr7.3:26402384-26402403 | MS.gene065443:CDS | 40.0% |
| ! | TTTCGGATTAGGATTCCAAC+GGG | + | chr7.3:26402385-26402404 | MS.gene065443:CDS | 40.0% |
| !! | AGAATACCATTTTTCGCGGT+AGG | - | chr7.3:26401885-26401904 | None:intergenic | 40.0% |
| !! | CGAGAGAATACCATTTTTCG+CGG | - | chr7.3:26401889-26401908 | None:intergenic | 40.0% |
| !! | GGGTTGCTTTGAGATTTGTT+CGG | - | chr7.3:26401913-26401932 | None:intergenic | 40.0% |
| AACCAACGGAAACTCCATTC+CGG | - | chr7.3:26402336-26402355 | None:intergenic | 45.0% | |
| CAAGAAGAGGAAACTACGCA+AGG | + | chr7.3:26402756-26402775 | MS.gene065443:CDS | 45.0% | |
| CATCTGCAACTTCTTGCCAA+TGG | - | chr7.3:26401934-26401953 | None:intergenic | 45.0% | |
| CGTTCAGTGTCGTCACAAAA+TGG | + | chr7.3:26402000-26402019 | MS.gene065443:CDS | 45.0% | |
| GAGAATGGAGCAGATGAAGA+TGG | + | chr7.3:26402615-26402634 | MS.gene065443:intron | 45.0% | |
| GATCTCGTTCTTCTTCTTCG+TGG | + | chr7.3:26402083-26402102 | MS.gene065443:CDS | 45.0% | |
| GATTCTGTTGGAGAAGATGG+TGG | - | chr7.3:26401737-26401756 | None:intergenic | 45.0% | |
| GTGGGTTCTCTTCAAAGCTA+TGG | + | chr7.3:26402102-26402121 | MS.gene065443:CDS | 45.0% | |
| TCGATTCCTACCGCGAAAAA+TGG | + | chr7.3:26401876-26401895 | MS.gene065443:CDS | 45.0% | |
| ! | CTAGGATCAATGGTGGAACA+AGG | + | chr7.3:26402470-26402489 | MS.gene065443:CDS | 45.0% |
| ! | GAATCTGGGTCTAGGATCAA+TGG | + | chr7.3:26402460-26402479 | MS.gene065443:CDS | 45.0% |
| ! | GAATGGAGTTTCCGTTGGTT+CGG | + | chr7.3:26402336-26402355 | MS.gene065443:CDS | 45.0% |
| ! | GAGAGATGGGTTTGTGAGAA+TGG | + | chr7.3:26402600-26402619 | MS.gene065443:intron | 45.0% |
| !! | AATGGAGTTTCCGTTGGTTC+GGG | + | chr7.3:26402337-26402356 | MS.gene065443:CDS | 45.0% |
| !! | TGGTGGAACAAGGCTTGTTA+AGG | + | chr7.3:26402480-26402499 | MS.gene065443:CDS | 45.0% |
| !!! | TGATTTTGGAGTCTCAGCAG+AGG | + | chr7.3:26402695-26402714 | MS.gene065443:intron | 45.0% |
| AAGAGAGAGAGGGAGAGAGA+GGG | + | chr7.3:26402520-26402539 | MS.gene065443:CDS | 50.0% | |
| ACCAAAACCACCCGAACCAA+CGG | - | chr7.3:26402350-26402369 | None:intergenic | 50.0% | |
| AGAGAGAGGGAGAGAGAGAA+AGG | + | chr7.3:26402533-26402552 | MS.gene065443:CDS | 50.0% | |
| GAAGAACGAGATCTCGGAAC+AGG | - | chr7.3:26402076-26402095 | None:intergenic | 50.0% | |
| GAGAGAGGGAGAGAGAGAAA+GGG | + | chr7.3:26402534-26402553 | MS.gene065443:CDS | 50.0% | |
| GGAGCAGATGAAGATGGAGA+TGG | + | chr7.3:26402621-26402640 | MS.gene065443:intron | 50.0% | |
| TACCGGAATGGAGTTTCCGT+TGG | + | chr7.3:26402331-26402350 | MS.gene065443:CDS | 50.0% | |
| TGTGTTGGGGAAGAGAGAGA+GGG | + | chr7.3:26402510-26402529 | MS.gene065443:CDS | 50.0% | |
| TTGTGTTGGGGAAGAGAGAG+AGG | + | chr7.3:26402509-26402528 | MS.gene065443:CDS | 50.0% | |
| ! | TCTGGGTCTAGGATCAATGG+TGG | + | chr7.3:26402463-26402482 | MS.gene065443:CDS | 50.0% |
| ! | TCTGGTTTATGCGGTGGAGA+AGG | - | chr7.3:26402154-26402173 | None:intergenic | 50.0% |
| ! | TCTGTTGGAGAAGATGGTGG+TGG | - | chr7.3:26401734-26401753 | None:intergenic | 50.0% |
| !! | CTGAACGGCAGTTTTAGCGA+CGG | - | chr7.3:26401987-26402006 | None:intergenic | 50.0% |
| !! | GGTGATGGGATCGATTCTGT+TGG | - | chr7.3:26401749-26401768 | None:intergenic | 50.0% |
| !! | TGAACGGCAGTTTTAGCGAC+GGG | - | chr7.3:26401986-26402005 | None:intergenic | 50.0% |
| !! | TGAGGAACTTAGAAGCGCTG+CGG | + | chr7.3:26402264-26402283 | MS.gene065443:CDS | 50.0% |
| !!! | GGGTTTTCTGGTTTATGCGG+TGG | - | chr7.3:26402160-26402179 | None:intergenic | 50.0% |
| CCTAATCCGAAACCCACCAC+CGG | - | chr7.3:26402377-26402396 | None:intergenic | 55.0% | |
| GAAGAGAGAGAGGGAGAGAG+AGG | + | chr7.3:26402519-26402538 | MS.gene065443:CDS | 55.0% | |
| GAGGGAAAGAGGGAGAGGTA+CGG | - | chr7.3:26401780-26401799 | None:intergenic | 55.0% | |
| GATTCCAACGGGTGTAAGCG+TGG | + | chr7.3:26402396-26402415 | MS.gene065443:CDS | 55.0% | |
| GGTTTATGCGGTGGAGAAGG+AGG | - | chr7.3:26402151-26402170 | None:intergenic | 55.0% | |
| GTTAGGGCAACGAACAGCGA+CGG | - | chr7.3:26401957-26401976 | None:intergenic | 55.0% | |
| GTTTCTTCCGGTGTCCAGCA+CGG | - | chr7.3:26401845-26401864 | None:intergenic | 55.0% | |
| ! | TAGCGACGGGTGAAGCGTTA+GGG | - | chr7.3:26401973-26401992 | None:intergenic | 55.0% |
| ! | TTAGCGACGGGTGAAGCGTT+AGG | - | chr7.3:26401974-26401993 | None:intergenic | 55.0% |
| !! | GAGGAACTTAGAAGCGCTGC+GGG | + | chr7.3:26402265-26402284 | MS.gene065443:CDS | 55.0% |
| !! | GTACGGCTGATGGTGGTGAT+GGG | - | chr7.3:26401763-26401782 | None:intergenic | 55.0% |
| !! | GTTTTGGTGGTTCCGGTGGT+GGG | + | chr7.3:26402362-26402381 | MS.gene065443:CDS | 55.0% |
| !!! | GTTGGTTCGGGTGGTTTTGG+TGG | + | chr7.3:26402349-26402368 | MS.gene065443:CDS | 55.0% |
| !!! | TCCGTTGGTTCGGGTGGTTT+TGG | + | chr7.3:26402346-26402365 | MS.gene065443:CDS | 55.0% |
| !!! | TCGGGTGGTTTTGGTGGTTC+CGG | + | chr7.3:26402355-26402374 | MS.gene065443:CDS | 55.0% |
| AGACGGCGAGATGAGGTTGG+TGG | - | chr7.3:26401815-26401834 | None:intergenic | 60.0% | |
| GGAAGACGGCGAGATGAGGT+TGG | - | chr7.3:26401818-26401837 | None:intergenic | 60.0% | |
| TGCGGTGGAGAAGGAGGAGA+AGG | - | chr7.3:26402145-26402164 | None:intergenic | 60.0% | |
| TGGTGGAAGACGGCGAGATG+AGG | - | chr7.3:26401822-26401841 | None:intergenic | 60.0% | |
| ! | AGAGGGAGAGGTACGGCTGA+TGG | - | chr7.3:26401773-26401792 | None:intergenic | 60.0% |
| ! | GTGGTGCTGGGAGGGAAAGA+GGG | - | chr7.3:26401790-26401809 | None:intergenic | 60.0% |
| !! | AGGTTGGTGGTGGTGGTGCT+GGG | - | chr7.3:26401802-26401821 | None:intergenic | 60.0% |
| !! | CCGGTGGTGGGTTTCGGATT+AGG | + | chr7.3:26402374-26402393 | MS.gene065443:CDS | 60.0% |
| !! | CGAGATGAGGTTGGTGGTGG+TGG | - | chr7.3:26401809-26401828 | None:intergenic | 60.0% |
| !! | GAACTTAGAAGCGCTGCGGG+TGG | + | chr7.3:26402268-26402287 | MS.gene065443:CDS | 60.0% |
| !! | GGAGTTTCCGTTGGTTCGGG+TGG | + | chr7.3:26402340-26402359 | MS.gene065443:CDS | 60.0% |
| !! | GGTACGGCTGATGGTGGTGA+TGG | - | chr7.3:26401764-26401783 | None:intergenic | 60.0% |
| !! | GGTTTTGGTGGTTCCGGTGG+TGG | + | chr7.3:26402361-26402380 | MS.gene065443:CDS | 60.0% |
| !! | GTGGTTCCGGTGGTGGGTTT+CGG | + | chr7.3:26402368-26402387 | MS.gene065443:CDS | 60.0% |
| !! | TCCAGCACGGTGGTGGAAGA+CGG | - | chr7.3:26401832-26401851 | None:intergenic | 60.0% |
| !!! | GGTGGTTTTGGTGGTTCCGG+TGG | + | chr7.3:26402358-26402377 | MS.gene065443:CDS | 60.0% |
| GCTGGGAGGGAAAGAGGGAG+AGG | - | chr7.3:26401785-26401804 | None:intergenic | 65.0% | |
| GGTGTAAGCGTGGCGCAACC+CGG | + | chr7.3:26402406-26402425 | MS.gene065443:CDS | 65.0% | |
| TCCACCACCGTGCTGGACAC+CGG | + | chr7.3:26401835-26401854 | MS.gene065443:CDS | 65.0% | |
| TCTTCCGGTGTCCAGCACGG+TGG | - | chr7.3:26401842-26401861 | None:intergenic | 65.0% | |
| TGCGCCACGCTTACACCCGT+TGG | - | chr7.3:26402403-26402422 | None:intergenic | 65.0% | |
| ! | GGGAGAGGTACGGCTGATGG+TGG | - | chr7.3:26401770-26401789 | None:intergenic | 65.0% |
| ! | GGTGGTGCTGGGAGGGAAAG+AGG | - | chr7.3:26401791-26401810 | None:intergenic | 65.0% |
| !! | CGGCGAGATGAGGTTGGTGG+TGG | - | chr7.3:26401812-26401831 | None:intergenic | 65.0% |
| !! | CTTAGAAGCGCTGCGGGTGG+TGG | + | chr7.3:26402271-26402290 | MS.gene065443:CDS | 65.0% |
| !! | GAGGTTGGTGGTGGTGGTGC+TGG | - | chr7.3:26401803-26401822 | None:intergenic | 65.0% |
| !! | GCGGGTGGTGGTTCTGGTTC+TGG | + | chr7.3:26402283-26402302 | MS.gene065443:CDS | 65.0% |
| !! | TGGTGGTGGTGGTGCTGGGA+GGG | - | chr7.3:26401798-26401817 | None:intergenic | 65.0% |
| !! | TTGGTGGTGGTGGTGCTGGG+AGG | - | chr7.3:26401799-26401818 | None:intergenic | 65.0% |
| GCCGTCTTCCACCACCGTGC+TGG | + | chr7.3:26401828-26401847 | MS.gene065443:CDS | 70.0% | |
| TCCGGTGTCCAGCACGGTGG+TGG | - | chr7.3:26401839-26401858 | None:intergenic | 70.0% | |
| ! | AGCGCTGCGGGTGGTGGTTC+TGG | + | chr7.3:26402277-26402296 | MS.gene065443:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 26401719 | 26403015 | 26401719 | ID=MS.gene065443 |
| chr7.3 | mRNA | 26401719 | 26403015 | 26401719 | ID=MS.gene065443.t1;Parent=MS.gene065443 |
| chr7.3 | exon | 26401719 | 26402594 | 26401719 | ID=MS.gene065443.t1.exon1;Parent=MS.gene065443.t1 |
| chr7.3 | CDS | 26401719 | 26402594 | 26401719 | ID=cds.MS.gene065443.t1;Parent=MS.gene065443.t1 |
| chr7.3 | exon | 26402712 | 26402778 | 26402712 | ID=MS.gene065443.t1.exon2;Parent=MS.gene065443.t1 |
| chr7.3 | CDS | 26402712 | 26402778 | 26402712 | ID=cds.MS.gene065443.t1;Parent=MS.gene065443.t1 |
| chr7.3 | exon | 26402999 | 26403015 | 26402999 | ID=MS.gene065443.t1.exon3;Parent=MS.gene065443.t1 |
| chr7.3 | CDS | 26402999 | 26403015 | 26402999 | ID=cds.MS.gene065443.t1;Parent=MS.gene065443.t1 |
| Gene Sequence |
| Protein sequence |
