Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06559.t1 | XP_003602454.1 | 93.8 | 257 | 11 | 3 | 1 | 254 | 1 | 255 | 8.10E-128 | 466.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06559.t1 | A2Y5T7 | 42.7 | 75 | 43 | 0 | 134 | 208 | 167 | 241 | 2.5e-08 | 60.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06559.t1 | G7J9R3 | 93.8 | 257 | 11 | 3 | 1 | 254 | 1 | 255 | 5.8e-128 | 466.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene06559.t1 | TR | GNAT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06559.t1 | MTR_3g093540 | 91.829 | 257 | 16 | 3 | 1 | 254 | 1 | 255 | 9.42e-167 | 461 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06559.t1 | AT4G19985 | 48.052 | 231 | 89 | 5 | 17 | 223 | 14 | 237 | 3.14e-67 | 208 |
| MS.gene06559.t1 | AT4G19985 | 48.052 | 231 | 89 | 5 | 17 | 223 | 14 | 237 | 3.14e-67 | 208 |
| MS.gene06559.t1 | AT4G19985 | 42.205 | 263 | 89 | 6 | 17 | 223 | 14 | 269 | 4.88e-60 | 191 |
| MS.gene06559.t1 | AT4G19985 | 39.881 | 168 | 70 | 5 | 17 | 160 | 14 | 174 | 1.56e-30 | 112 |
| MS.gene06559.t1 | AT4G19985 | 39.881 | 168 | 70 | 5 | 17 | 160 | 14 | 174 | 1.56e-30 | 112 |
| MS.gene06559.t1 | AT4G19985 | 39.881 | 168 | 70 | 5 | 17 | 160 | 14 | 174 | 1.56e-30 | 112 |
| MS.gene06559.t1 | AT4G19985 | 39.181 | 171 | 73 | 5 | 17 | 163 | 14 | 177 | 1.84e-30 | 112 |
Find 59 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAAATCAATGGAATTAAAA+TGG | 0.164701 | 3.2:+78531484 | MS.gene06559:CDS |
| GGTCGTGCTGTTTCTGATTT+TGG | 0.179788 | 3.2:+78531864 | MS.gene06559:CDS |
| TGGATTTGGTGGTGACATTT+TGG | 0.201084 | 3.2:+78533546 | MS.gene06559:CDS |
| TGACGGTTTGCTCACTTTCC+TGG | 0.239344 | 3.2:-78533612 | None:intergenic |
| TTTGGAGATGTTGAGGATTA+AGG | 0.248880 | 3.2:-78531605 | None:intergenic |
| CAGGAGTGTCGGAGATATTA+AGG | 0.273878 | 3.2:-78531671 | None:intergenic |
| TGCAAATGGAGCAGAGGTTT+TGG | 0.278048 | 3.2:-78531623 | None:intergenic |
| CCTCACCACATTGATGTTGA+TGG | 0.296205 | 3.2:+78531765 | MS.gene06559:CDS |
| CCTGAACGTGATTTGTTGAT+TGG | 0.298630 | 3.2:+78531837 | MS.gene06559:CDS |
| ATTAAGGTGGTGTGGGTTAG+TGG | 0.360151 | 3.2:-78531589 | None:intergenic |
| TTGTTGATATCAACTGGTTC+AGG | 0.374194 | 3.2:-78531690 | None:intergenic |
| CGTGATTTGTTGATTGGGTT+TGG | 0.384811 | 3.2:+78531843 | MS.gene06559:CDS |
| CGAAGCTTGTTGATATCAAC+TGG | 0.398400 | 3.2:-78531696 | None:intergenic |
| CTGAACGTGATTTGTTGATT+GGG | 0.419104 | 3.2:+78531838 | MS.gene06559:CDS |
| TGCTTCTATATACGATGTTA+TGG | 0.428860 | 3.2:+78531893 | MS.gene06559:CDS |
| TATTCCATCCTTGAGGAGAA+TGG | 0.433471 | 3.2:+78532512 | MS.gene06559:CDS |
| TCCTTGAGGAGAATGGGAAT+TGG | 0.440922 | 3.2:+78532519 | MS.gene06559:CDS |
| ATTCCATCCTTGAGGAGAAT+GGG | 0.454926 | 3.2:+78532513 | MS.gene06559:CDS |
| GTGTCGGAGATATTAAGGTT+GGG | 0.458757 | 3.2:-78531666 | None:intergenic |
| CCAATCAACAAATCACGTTC+AGG | 0.463909 | 3.2:-78531837 | None:intergenic |
| CCTCTCATCCTCTGAGCAAA+GGG | 0.464970 | 3.2:-78533430 | None:intergenic |
| GGAAATGAAAAGTGGGAGAA+GGG | 0.466176 | 3.2:-78531568 | None:intergenic |
| GAAATCAATGGAATTAAAAT+GGG | 0.468872 | 3.2:+78531485 | MS.gene06559:CDS |
| AACAATAGCTTTCGGCCTGC+AGG | 0.469985 | 3.2:-78533637 | None:intergenic |
| AAATCACGTTCAGGAGAAAC+CGG | 0.482910 | 3.2:-78531828 | None:intergenic |
| TTTAAGGCTTGTGGATTTGG+TGG | 0.483526 | 3.2:+78533535 | MS.gene06559:CDS |
| GAGCAAACCGTCACACCTGC+AGG | 0.493036 | 3.2:+78533622 | MS.gene06559:CDS |
| TCCAATTCCCATTCTCCTCA+AGG | 0.504293 | 3.2:-78532520 | None:intergenic |
| GTGAAAAGAGTGGTTGCAAA+TGG | 0.508457 | 3.2:-78531637 | None:intergenic |
| GCGGAACCAACAATAGCTTT+CGG | 0.512055 | 3.2:-78533645 | None:intergenic |
| TGCAGGCCGAAAGCTATTGT+TGG | 0.512613 | 3.2:+78533639 | MS.gene06559:CDS |
| AACTGTTTCATCAACAATCC+AGG | 0.512965 | 3.2:+78533594 | MS.gene06559:CDS |
| TGTCGGAGATATTAAGGTTG+GGG | 0.519931 | 3.2:-78531665 | None:intergenic |
| CTTTCGGCCTGCAGGTGTGA+CGG | 0.523798 | 3.2:-78533629 | None:intergenic |
| ACCTCTCATCCTCTGAGCAA+AGG | 0.534812 | 3.2:-78533431 | None:intergenic |
| CCCTTTGCTCAGAGGATGAG+AGG | 0.537381 | 3.2:+78533430 | MS.gene06559:CDS |
| AGTGTCGGAGATATTAAGGT+TGG | 0.549755 | 3.2:-78531667 | None:intergenic |
| ATCAACTGGTTCAGGAGTGT+CGG | 0.554412 | 3.2:-78531682 | None:intergenic |
| TGTTGAGGATTAAGGTGGTG+TGG | 0.555356 | 3.2:-78531597 | None:intergenic |
| AACAGTTCTCGTGTACATCA+TGG | 0.561270 | 3.2:-78533578 | None:intergenic |
| GTTGAGGATTAAGGTGGTGT+GGG | 0.570563 | 3.2:-78531596 | None:intergenic |
| TGGAAATGAAAAGTGGGAGA+AGG | 0.570598 | 3.2:-78531569 | None:intergenic |
| ATTCCCATTCTCCTCAAGGA+TGG | 0.579989 | 3.2:-78532516 | None:intergenic |
| GGAGATGTTGAGGATTAAGG+TGG | 0.587846 | 3.2:-78531602 | None:intergenic |
| TGCAGGTTATTCCATCCTTG+AGG | 0.587883 | 3.2:+78532505 | MS.gene06559:intron |
| ACTCAATATTATCATCCTTG+AGG | 0.593636 | 3.2:-78533691 | None:intergenic |
| GGGTTAGTGGAAATGAAAAG+TGG | 0.602812 | 3.2:-78531576 | None:intergenic |
| GACAGATTCAAGAATCCTCA+AGG | 0.611144 | 3.2:+78533676 | MS.gene06559:CDS |
| GAAATGAAAAGTGGGAGAAG+GGG | 0.622002 | 3.2:-78531567 | None:intergenic |
| CATAGCAGCCCTTTGCTCAG+AGG | 0.625766 | 3.2:+78533422 | MS.gene06559:CDS |
| AGTGGTTGCAAATGGAGCAG+AGG | 0.626606 | 3.2:-78531629 | None:intergenic |
| TTTCGAAGCGAAAACTTCAG+TGG | 0.633639 | 3.2:-78531466 | None:intergenic |
| TTCTTGAATCTGTCAATCAG+AGG | 0.641603 | 3.2:-78533667 | None:intergenic |
| CCATCAACATCAATGTGGTG+AGG | 0.651681 | 3.2:-78531765 | None:intergenic |
| GGTTAGTGGAAATGAAAAGT+GGG | 0.652172 | 3.2:-78531575 | None:intergenic |
| TGGGGAATCTGTGAAAAGAG+TGG | 0.656361 | 3.2:-78531647 | None:intergenic |
| TTGAATCTGTCAATCAGAGG+CGG | 0.671155 | 3.2:-78533664 | None:intergenic |
| TGATTGTTAGAAAAGTTGTG+AGG | 0.694957 | 3.2:+78532547 | MS.gene06559:CDS |
| TTAAACCATCAACATCAATG+TGG | 0.739906 | 3.2:-78531770 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAAAATGTATAAATAAA+GGG | + | chr3.2:78532957-78532976 | MS.gene06559:intron | 10.0% |
| !! | TAAGAAAAATGTATAAATAA+AGG | + | chr3.2:78532956-78532975 | MS.gene06559:intron | 10.0% |
| !! | AATTAGAGTTATATTGTATT+GGG | + | chr3.2:78533022-78533041 | MS.gene06559:intron | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | + | chr3.2:78532958-78532977 | MS.gene06559:intron | 15.0% |
| !! | CAAAATAACCAAAATAATAA+TGG | - | chr3.2:78532022-78532041 | None:intergenic | 15.0% |
| !! | TAATTAGAGTTATATTGTAT+TGG | + | chr3.2:78533021-78533040 | MS.gene06559:intron | 15.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | + | chr3.2:78532981-78533000 | MS.gene06559:intron | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | + | chr3.2:78533054-78533073 | MS.gene06559:intron | 20.0% |
| !! | ATTGTCAGTTATTGTAATTA+TGG | - | chr3.2:78532087-78532106 | None:intergenic | 20.0% |
| !! | GAAATCAATGGAATTAAAAT+GGG | + | chr3.2:78531485-78531504 | MS.gene06559:CDS | 20.0% |
| !!! | ATTTTGGTTATTTTGTTTCT+GGG | + | chr3.2:78532027-78532046 | MS.gene06559:intron | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | + | chr3.2:78533091-78533110 | MS.gene06559:intron | 20.0% |
| !!! | TATTTTGGTTATTTTGTTTC+TGG | + | chr3.2:78532026-78532045 | MS.gene06559:intron | 20.0% |
| !!! | TCTTTGTTTTGAAAAAATGT+AGG | - | chr3.2:78531933-78531952 | None:intergenic | 20.0% |
| !!! | TTTTTCCCTTTTTCAATATT+TGG | + | chr3.2:78532410-78532429 | MS.gene06559:intron | 20.0% |
| ! | AAGTTCCAAATATCTGAATA+TGG | + | chr3.2:78533360-78533379 | MS.gene06559:intron | 25.0% |
| ! | AATAAGTTGTTTATCCAAAC+AGG | + | chr3.2:78532343-78532362 | MS.gene06559:intron | 25.0% |
| ! | AATATAAAGGGTTGTGTATA+AGG | + | chr3.2:78533303-78533322 | MS.gene06559:intron | 25.0% |
| ! | ATAAGTTGTTTATCCAAACA+GGG | + | chr3.2:78532344-78532363 | MS.gene06559:intron | 25.0% |
| ! | ATAGACCATATTCAGATATT+TGG | - | chr3.2:78533368-78533387 | None:intergenic | 25.0% |
| ! | ATATAAAGGGTTGTGTATAA+GGG | + | chr3.2:78533304-78533323 | MS.gene06559:intron | 25.0% |
| ! | ATGAGTTCAATTTCATATCT+TGG | + | chr3.2:78531989-78532008 | MS.gene06559:intron | 25.0% |
| ! | CAATGCCAAATATTGAAAAA+GGG | - | chr3.2:78532418-78532437 | None:intergenic | 25.0% |
| ! | CGAAATCAATGGAATTAAAA+TGG | + | chr3.2:78531484-78531503 | MS.gene06559:CDS | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | + | chr3.2:78532980-78532999 | MS.gene06559:intron | 25.0% |
| ! | TAAGTCAAATTAAACCTTGT+AGG | + | chr3.2:78533237-78533256 | MS.gene06559:intron | 25.0% |
| ! | TCAATGCCAAATATTGAAAA+AGG | - | chr3.2:78532419-78532438 | None:intergenic | 25.0% |
| ! | TGAATTTAATCACAATGTGT+CGG | + | chr3.2:78532839-78532858 | MS.gene06559:intron | 25.0% |
| !! | ACATGTTTTTCATTAACAAC+AGG | - | chr3.2:78532386-78532405 | None:intergenic | 25.0% |
| !! | ATCATTCATGAAGTTTTTGT+TGG | + | chr3.2:78532686-78532705 | MS.gene06559:intron | 25.0% |
| !! | TGAAATGGCTCAATTATTTT+GGG | + | chr3.2:78533069-78533088 | MS.gene06559:intron | 25.0% |
| !! | TTGAAATGGCTCAATTATTT+TGG | + | chr3.2:78533068-78533087 | MS.gene06559:intron | 25.0% |
| !!! | CTATAAGCTGTTTTCTATTT+TGG | - | chr3.2:78532290-78532309 | None:intergenic | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | + | chr3.2:78533090-78533109 | MS.gene06559:intron | 25.0% |
| !!! | TTTTCTCAGGTTGTTTTTTA+AGG | + | chr3.2:78533519-78533538 | MS.gene06559:intron | 25.0% |
| AAACAGTCTCACAATACTTA+TGG | - | chr3.2:78532198-78532217 | None:intergenic | 30.0% | |
| ACATCAATTACTGTTCACAA+AGG | - | chr3.2:78533491-78533510 | None:intergenic | 30.0% | |
| ACTAACTATTTATGCCTGTT+TGG | + | chr3.2:78532146-78532165 | MS.gene06559:intron | 30.0% | |
| ATTAGATTCTCATCAGCAAA+AGG | - | chr3.2:78532666-78532685 | None:intergenic | 30.0% | |
| ATTGAATCATCACAGAAGAT+AGG | - | chr3.2:78532590-78532609 | None:intergenic | 30.0% | |
| CAGCTTATAGCTTATACAAT+AGG | + | chr3.2:78532300-78532319 | MS.gene06559:intron | 30.0% | |
| CATCAATTACTGTTCACAAA+GGG | - | chr3.2:78533490-78533509 | None:intergenic | 30.0% | |
| CTTGTAGGAGTTGAATATAA+GGG | + | chr3.2:78533252-78533271 | MS.gene06559:intron | 30.0% | |
| GCAATAAAAGCTGTCATATT+GGG | + | chr3.2:78533185-78533204 | MS.gene06559:intron | 30.0% | |
| TATAAGATATAAGCCCTGTT+TGG | - | chr3.2:78532360-78532379 | None:intergenic | 30.0% | |
| TCAAATAAGTCAATCCAAAC+AGG | - | chr3.2:78532163-78532182 | None:intergenic | 30.0% | |
| TGATTGTTAGAAAAGTTGTG+AGG | + | chr3.2:78532547-78532566 | MS.gene06559:CDS | 30.0% | |
| TGCAATAAAAGCTGTCATAT+TGG | + | chr3.2:78533184-78533203 | MS.gene06559:intron | 30.0% | |
| TGCTTCTATATACGATGTTA+TGG | + | chr3.2:78531893-78531912 | MS.gene06559:CDS | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | + | chr3.2:78532965-78532984 | MS.gene06559:intron | 30.0% | |
| TTAAACCATCAACATCAATG+TGG | - | chr3.2:78531773-78531792 | None:intergenic | 30.0% | |
| TTGTAGGAGTTGAATATAAG+GGG | + | chr3.2:78533253-78533272 | MS.gene06559:intron | 30.0% | |
| TTGTTCATTATTCCTCTACA+TGG | + | chr3.2:78533453-78533472 | MS.gene06559:intron | 30.0% | |
| ! | CAATTTCATATCTTGGTTCT+TGG | + | chr3.2:78531996-78532015 | MS.gene06559:intron | 30.0% |
| ! | GTTCTTGGCCATTATTATTT+TGG | + | chr3.2:78532011-78532030 | MS.gene06559:intron | 30.0% |
| ! | TTTCTGGGTTTTCTTAGTTT+TGG | + | chr3.2:78532042-78532061 | MS.gene06559:intron | 30.0% |
| ! | TTTTTGTTGGCATAGAGTTT+TGG | + | chr3.2:78532699-78532718 | MS.gene06559:intron | 30.0% |
| !! | CAATATTTGGCATTGATTTG+AGG | + | chr3.2:78532423-78532442 | MS.gene06559:intron | 30.0% |
| !! | TAAGTATTGTGAGACTGTTT+TGG | + | chr3.2:78532198-78532217 | MS.gene06559:intron | 30.0% |
| !! | TTCTGGGTTTTCTTAGTTTT+GGG | + | chr3.2:78532043-78532062 | MS.gene06559:intron | 30.0% |
| !! | TTTTTGTTTGTGTGTGGTTT+TGG | - | chr3.2:78531535-78531554 | None:intergenic | 30.0% |
| !!! | GTTTTGAAAAAATGTAGGCA+AGG | - | chr3.2:78531928-78531947 | None:intergenic | 30.0% |
| !!! | TTTTTTAAGGCTTGTGGATT+TGG | + | chr3.2:78533532-78533551 | MS.gene06559:CDS | 30.0% |
| AACTGTTTCATCAACAATCC+AGG | + | chr3.2:78533594-78533613 | MS.gene06559:CDS | 35.0% | |
| AATCTGTGTGAAAACCAAAC+TGG | - | chr3.2:78532937-78532956 | None:intergenic | 35.0% | |
| AGAAAATGGGTCAGATATTC+CGG | + | chr3.2:78533104-78533123 | MS.gene06559:intron | 35.0% | |
| CCTTATATTCAACTCCTACA+AGG | - | chr3.2:78533254-78533273 | None:intergenic | 35.0% | |
| CCTTGTAGGAGTTGAATATA+AGG | + | chr3.2:78533251-78533270 | MS.gene06559:intron | 35.0% | |
| GATAAAACTAGACCATGTAG+AGG | - | chr3.2:78533468-78533487 | None:intergenic | 35.0% | |
| GGTTAGTGGAAATGAAAAGT+GGG | - | chr3.2:78531578-78531597 | None:intergenic | 35.0% | |
| TTCTGTGATGATTCAATGCA+TGG | + | chr3.2:78532593-78532612 | MS.gene06559:intron | 35.0% | |
| TTCTTGAATCTGTCAATCAG+AGG | - | chr3.2:78533670-78533689 | None:intergenic | 35.0% | |
| TTTGGAGATGTTGAGGATTA+AGG | - | chr3.2:78531608-78531627 | None:intergenic | 35.0% | |
| ! | AGTTTTCGCTTCGAAATCAA+TGG | + | chr3.2:78531473-78531492 | MS.gene06559:CDS | 35.0% |
| ! | TGAAAGTGAGTATCTAGTTC+AGG | - | chr3.2:78532621-78532640 | None:intergenic | 35.0% |
| ! | TTGTTGATATCAACTGGTTC+AGG | - | chr3.2:78531693-78531712 | None:intergenic | 35.0% |
| !! | CTGAACGTGATTTGTTGATT+GGG | + | chr3.2:78531838-78531857 | MS.gene06559:CDS | 35.0% |
| !!! | AGGTTGTTTTTTAAGGCTTG+TGG | + | chr3.2:78533526-78533545 | MS.gene06559:intron | 35.0% |
| !!! | CATTGTTGATTTTTTCACGC+CGG | + | chr3.2:78531809-78531828 | MS.gene06559:CDS | 35.0% |
| !!! | TAGCGTTTTTTGTTTGTGTG+TGG | - | chr3.2:78531541-78531560 | None:intergenic | 35.0% |
| AAATCACGTTCAGGAGAAAC+CGG | - | chr3.2:78531831-78531850 | None:intergenic | 40.0% | |
| AACAGTTCTCGTGTACATCA+TGG | - | chr3.2:78533581-78533600 | None:intergenic | 40.0% | |
| ATAAGGGTTCTTCTCATCTC+TGG | + | chr3.2:78533320-78533339 | MS.gene06559:intron | 40.0% | |
| ATTCCATCCTTGAGGAGAAT+GGG | + | chr3.2:78532513-78532532 | MS.gene06559:CDS | 40.0% | |
| CATCACAGAAGATAGGCAAA+AGG | - | chr3.2:78532583-78532602 | None:intergenic | 40.0% | |
| CCAATCAACAAATCACGTTC+AGG | - | chr3.2:78531840-78531859 | None:intergenic | 40.0% | |
| CGGCGTGAAAAAATCAACAA+TGG | - | chr3.2:78531811-78531830 | None:intergenic | 40.0% | |
| GAAAATGGGTCAGATATTCC+GGG | + | chr3.2:78533105-78533124 | MS.gene06559:intron | 40.0% | |
| GAAATGAAAAGTGGGAGAAG+GGG | - | chr3.2:78531570-78531589 | None:intergenic | 40.0% | |
| GAATAATGCCCGTCAACTAT+GGG | - | chr3.2:78532468-78532487 | None:intergenic | 40.0% | |
| GACAGATTCAAGAATCCTCA+AGG | + | chr3.2:78533676-78533695 | MS.gene06559:CDS | 40.0% | |
| GGAAATGAAAAGTGGGAGAA+GGG | - | chr3.2:78531571-78531590 | None:intergenic | 40.0% | |
| GTCGATGTGTAAGTGTGTAT+TGG | - | chr3.2:78532789-78532808 | None:intergenic | 40.0% | |
| GTGAAAAGAGTGGTTGCAAA+TGG | - | chr3.2:78531640-78531659 | None:intergenic | 40.0% | |
| GTGTCGGAGATATTAAGGTT+GGG | - | chr3.2:78531669-78531688 | None:intergenic | 40.0% | |
| TATTCCATCCTTGAGGAGAA+TGG | + | chr3.2:78532512-78532531 | MS.gene06559:CDS | 40.0% | |
| TGAATAATGCCCGTCAACTA+TGG | - | chr3.2:78532469-78532488 | None:intergenic | 40.0% | |
| TGGAAATGAAAAGTGGGAGA+AGG | - | chr3.2:78531572-78531591 | None:intergenic | 40.0% | |
| TGTCGGAGATATTAAGGTTG+GGG | - | chr3.2:78531668-78531687 | None:intergenic | 40.0% | |
| TTGAATCTGTCAATCAGAGG+CGG | - | chr3.2:78533667-78533686 | None:intergenic | 40.0% | |
| TTTCGAAGCGAAAACTTCAG+TGG | - | chr3.2:78531469-78531488 | None:intergenic | 40.0% | |
| ! | AGTGTCGGAGATATTAAGGT+TGG | - | chr3.2:78531670-78531689 | None:intergenic | 40.0% |
| ! | CAAACTGGCTCAGATAAAAC+GGG | - | chr3.2:78532922-78532941 | None:intergenic | 40.0% |
| ! | CCAAACTGGCTCAGATAAAA+CGG | - | chr3.2:78532923-78532942 | None:intergenic | 40.0% |
| ! | GGGTTAGTGGAAATGAAAAG+TGG | - | chr3.2:78531579-78531598 | None:intergenic | 40.0% |
| ! | TCTACTATGAGGCACTAACA+CGG | + | chr3.2:78532760-78532779 | MS.gene06559:intron | 40.0% |
| ! | TTGCGTTTTCCCATAGTTGA+CGG | + | chr3.2:78532456-78532475 | MS.gene06559:intron | 40.0% |
| ! | TTTAAGGCTTGTGGATTTGG+TGG | + | chr3.2:78533535-78533554 | MS.gene06559:CDS | 40.0% |
| !! | CCTGAACGTGATTTGTTGAT+TGG | + | chr3.2:78531837-78531856 | MS.gene06559:CDS | 40.0% |
| !! | CGAAGCTTGTTGATATCAAC+TGG | - | chr3.2:78531699-78531718 | None:intergenic | 40.0% |
| !! | CGTGATTTGTTGATTGGGTT+TGG | + | chr3.2:78531843-78531862 | MS.gene06559:CDS | 40.0% |
| !! | GATGTTCTCGACTTTTTCTC+AGG | + | chr3.2:78533506-78533525 | MS.gene06559:intron | 40.0% |
| !!! | TGGATTTGGTGGTGACATTT+TGG | + | chr3.2:78533546-78533565 | MS.gene06559:CDS | 40.0% |
| AACATGCTTCAGTGTCTTGC+AGG | + | chr3.2:78532488-78532507 | MS.gene06559:intron | 45.0% | |
| ATTCCCATTCTCCTCAAGGA+TGG | - | chr3.2:78532519-78532538 | None:intergenic | 45.0% | |
| CCATCAACATCAATGTGGTG+AGG | - | chr3.2:78531768-78531787 | None:intergenic | 45.0% | |
| CCTCACCACATTGATGTTGA+TGG | + | chr3.2:78531765-78531784 | MS.gene06559:CDS | 45.0% | |
| GCACCAACGCTTCTAATTGA+TGG | - | chr3.2:78532883-78532902 | None:intergenic | 45.0% | |
| GCGGAACCAACAATAGCTTT+CGG | - | chr3.2:78533648-78533667 | None:intergenic | 45.0% | |
| GGAGATGTTGAGGATTAAGG+TGG | - | chr3.2:78531605-78531624 | None:intergenic | 45.0% | |
| GTTGAGGATTAAGGTGGTGT+GGG | - | chr3.2:78531599-78531618 | None:intergenic | 45.0% | |
| TCACGTCAGTCTCTACTATG+AGG | + | chr3.2:78532749-78532768 | MS.gene06559:intron | 45.0% | |
| TCCAATTCCCATTCTCCTCA+AGG | - | chr3.2:78532523-78532542 | None:intergenic | 45.0% | |
| TCCTTGAGGAGAATGGGAAT+TGG | + | chr3.2:78532519-78532538 | MS.gene06559:CDS | 45.0% | |
| TGCAGGTTATTCCATCCTTG+AGG | + | chr3.2:78532505-78532524 | MS.gene06559:intron | 45.0% | |
| TGGGGAATCTGTGAAAAGAG+TGG | - | chr3.2:78531650-78531669 | None:intergenic | 45.0% | |
| TGTTGAGGATTAAGGTGGTG+TGG | - | chr3.2:78531600-78531619 | None:intergenic | 45.0% | |
| ! | ACGCCATCAATTAGAAGCGT+TGG | + | chr3.2:78532877-78532896 | MS.gene06559:intron | 45.0% |
| ! | ATCAACTGGTTCAGGAGTGT+CGG | - | chr3.2:78531685-78531704 | None:intergenic | 45.0% |
| ! | CCGTTTTATCTGAGCCAGTT+TGG | + | chr3.2:78532920-78532939 | MS.gene06559:intron | 45.0% |
| ! | TGCAAATGGAGCAGAGGTTT+TGG | - | chr3.2:78531626-78531645 | None:intergenic | 45.0% |
| ! | TGCGTTTTCCCATAGTTGAC+GGG | + | chr3.2:78532457-78532476 | MS.gene06559:intron | 45.0% |
| !! | ATTAAGGTGGTGTGGGTTAG+TGG | - | chr3.2:78531592-78531611 | None:intergenic | 45.0% |
| !! | CAGGAGTGTCGGAGATATTA+AGG | - | chr3.2:78531674-78531693 | None:intergenic | 45.0% |
| !!! | CAGAGGTTTTGGAGATGTTG+AGG | - | chr3.2:78531615-78531634 | None:intergenic | 45.0% |
| !!! | GGTCGTGCTGTTTCTGATTT+TGG | + | chr3.2:78531864-78531883 | MS.gene06559:CDS | 45.0% |
| !! | AAAAAAAAAAACAAATATAA+AGG | + | chr3.2:78533290-78533309 | MS.gene06559:intron | 5.0% |
| !! | AAAAAAAAAACAAATATAAA+GGG | + | chr3.2:78533291-78533310 | MS.gene06559:intron | 5.0% |
| !!! | ATTTGTTTTTTTTTTTAAAT+TGG | - | chr3.2:78533286-78533305 | None:intergenic | 5.0% |
| AACAATAGCTTTCGGCCTGC+AGG | - | chr3.2:78533640-78533659 | None:intergenic | 50.0% | |
| ACCTCTCATCCTCTGAGCAA+AGG | - | chr3.2:78533434-78533453 | None:intergenic | 50.0% | |
| AGTAGAGACTGACGTGAGTG+AGG | - | chr3.2:78532746-78532765 | None:intergenic | 50.0% | |
| AGTGGTTGCAAATGGAGCAG+AGG | - | chr3.2:78531632-78531651 | None:intergenic | 50.0% | |
| ATGGGTCAGATATTCCGGGA+CGG | + | chr3.2:78533109-78533128 | MS.gene06559:intron | 50.0% | |
| CCTCTCATCCTCTGAGCAAA+GGG | - | chr3.2:78533433-78533452 | None:intergenic | 50.0% | |
| CTCAGATAAAACGGGACGGA+GGG | - | chr3.2:78532914-78532933 | None:intergenic | 50.0% | |
| CTGGCTCAGATAAAACGGGA+CGG | - | chr3.2:78532918-78532937 | None:intergenic | 50.0% | |
| GTAGAGACTGACGTGAGTGA+GGG | - | chr3.2:78532745-78532764 | None:intergenic | 50.0% | |
| TGCAGGCCGAAAGCTATTGT+TGG | + | chr3.2:78533639-78533658 | MS.gene06559:CDS | 50.0% | |
| ! | TGACGGTTTGCTCACTTTCC+TGG | - | chr3.2:78533615-78533634 | None:intergenic | 50.0% |
| CATAGCAGCCCTTTGCTCAG+AGG | + | chr3.2:78533422-78533441 | MS.gene06559:CDS | 55.0% | |
| CCCTTTGCTCAGAGGATGAG+AGG | + | chr3.2:78533430-78533449 | MS.gene06559:CDS | 55.0% | |
| GACGGAGGGAGTAGTTCTCT+AGG | + | chr3.2:78533127-78533146 | MS.gene06559:intron | 55.0% | |
| GCTCAGATAAAACGGGACGG+AGG | - | chr3.2:78532915-78532934 | None:intergenic | 55.0% | |
| GTCAGATATTCCGGGACGGA+GGG | + | chr3.2:78533113-78533132 | MS.gene06559:intron | 55.0% | |
| CTTTCGGCCTGCAGGTGTGA+CGG | - | chr3.2:78533632-78533651 | None:intergenic | 60.0% | |
| GAGAACTACTCCCTCCGTCC+CGG | - | chr3.2:78533126-78533145 | None:intergenic | 60.0% | |
| GAGCAAACCGTCACACCTGC+AGG | + | chr3.2:78533622-78533641 | MS.gene06559:CDS | 60.0% | |
| GGTCAGATATTCCGGGACGG+AGG | + | chr3.2:78533112-78533131 | MS.gene06559:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 78531441 | 78533702 | 78531441 | ID=MS.gene06559 |
| chr3.2 | mRNA | 78531441 | 78533702 | 78531441 | ID=MS.gene06559.t1;Parent=MS.gene06559 |
| chr3.2 | exon | 78531441 | 78531914 | 78531441 | ID=MS.gene06559.t1.exon1;Parent=MS.gene06559.t1 |
| chr3.2 | CDS | 78531441 | 78531914 | 78531441 | ID=cds.MS.gene06559.t1;Parent=MS.gene06559.t1 |
| chr3.2 | exon | 78532510 | 78532568 | 78532510 | ID=MS.gene06559.t1.exon2;Parent=MS.gene06559.t1 |
| chr3.2 | CDS | 78532510 | 78532568 | 78532510 | ID=cds.MS.gene06559.t1;Parent=MS.gene06559.t1 |
| chr3.2 | exon | 78533395 | 78533451 | 78533395 | ID=MS.gene06559.t1.exon3;Parent=MS.gene06559.t1 |
| chr3.2 | CDS | 78533395 | 78533451 | 78533395 | ID=cds.MS.gene06559.t1;Parent=MS.gene06559.t1 |
| chr3.2 | exon | 78533528 | 78533702 | 78533528 | ID=MS.gene06559.t1.exon4;Parent=MS.gene06559.t1 |
| chr3.2 | CDS | 78533528 | 78533702 | 78533528 | ID=cds.MS.gene06559.t1;Parent=MS.gene06559.t1 |
| Gene Sequence |
| Protein sequence |
