Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065776.t1 | XP_024638164.1 | 78.1 | 383 | 19 | 4 | 1 | 318 | 1 | 383 | 1.10E-150 | 542.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065776.t1 | Q84T61 | 49.4 | 314 | 111 | 9 | 14 | 285 | 39 | 346 | 5.2e-64 | 246.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065776.t1 | G7JSS3 | 78.1 | 383 | 19 | 4 | 1 | 318 | 1 | 383 | 8.0e-151 | 542.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene065776.t1 | TF | HSF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065776.t1 | MTR_4g077970 | 78.068 | 383 | 19 | 4 | 1 | 318 | 1 | 383 | 0.0 | 572 |
| MS.gene065776.t1 | MTR_4g077970 | 77.542 | 236 | 18 | 2 | 118 | 318 | 1 | 236 | 3.09e-119 | 347 |
| MS.gene065776.t1 | MTR_5g029680 | 49.843 | 319 | 107 | 10 | 11 | 285 | 31 | 340 | 3.11e-85 | 265 |
| MS.gene065776.t1 | MTR_3g104550 | 40.359 | 223 | 91 | 5 | 11 | 203 | 45 | 255 | 6.87e-43 | 152 |
| MS.gene065776.t1 | MTR_1g061170 | 32.770 | 296 | 146 | 8 | 10 | 269 | 47 | 325 | 3.69e-41 | 149 |
| MS.gene065776.t1 | MTR_7g095680 | 41.063 | 207 | 89 | 3 | 11 | 187 | 48 | 251 | 7.32e-41 | 146 |
| MS.gene065776.t1 | MTR_1g102860 | 41.429 | 210 | 82 | 6 | 11 | 187 | 39 | 240 | 8.34e-41 | 145 |
| MS.gene065776.t1 | MTR_1g071360 | 40.299 | 201 | 94 | 4 | 12 | 191 | 32 | 227 | 2.88e-34 | 128 |
| MS.gene065776.t1 | MTR_1g071360 | 39.801 | 201 | 95 | 4 | 12 | 191 | 29 | 224 | 4.35e-34 | 128 |
| MS.gene065776.t1 | MTR_8g105780 | 34.016 | 244 | 117 | 5 | 12 | 221 | 22 | 255 | 4.55e-34 | 128 |
| MS.gene065776.t1 | MTR_6g043060 | 35.455 | 220 | 102 | 5 | 2 | 192 | 12 | 220 | 9.46e-34 | 126 |
| MS.gene065776.t1 | MTR_8g083100 | 37.073 | 205 | 89 | 5 | 13 | 188 | 23 | 216 | 5.12e-33 | 127 |
| MS.gene065776.t1 | MTR_2g100680 | 35.071 | 211 | 96 | 4 | 12 | 192 | 31 | 230 | 9.28e-33 | 126 |
| MS.gene065776.t1 | MTR_2g100670 | 36.216 | 185 | 78 | 3 | 12 | 166 | 33 | 207 | 1.77e-30 | 117 |
| MS.gene065776.t1 | MTR_2g100670 | 36.216 | 185 | 78 | 3 | 12 | 166 | 141 | 315 | 7.66e-30 | 117 |
| MS.gene065776.t1 | MTR_8g087540 | 33.514 | 185 | 85 | 4 | 10 | 163 | 10 | 187 | 3.71e-28 | 112 |
| MS.gene065776.t1 | MTR_2g017890 | 32.804 | 189 | 86 | 5 | 10 | 164 | 13 | 194 | 5.45e-26 | 106 |
| MS.gene065776.t1 | MTR_6g086805 | 32.843 | 204 | 111 | 5 | 7 | 188 | 6 | 205 | 8.72e-26 | 105 |
| MS.gene065776.t1 | MTR_3g101870 | 60.294 | 68 | 27 | 0 | 12 | 79 | 24 | 91 | 6.55e-22 | 95.1 |
| MS.gene065776.t1 | MTR_0020s0020 | 57.353 | 68 | 29 | 0 | 12 | 79 | 33 | 100 | 8.84e-22 | 94.4 |
| MS.gene065776.t1 | MTR_5g017470 | 57.353 | 68 | 29 | 0 | 12 | 79 | 9 | 76 | 2.51e-21 | 92.0 |
| MS.gene065776.t1 | MTR_5g010680 | 55.882 | 68 | 30 | 0 | 12 | 79 | 24 | 91 | 2.67e-21 | 93.2 |
| MS.gene065776.t1 | MTR_1g100777 | 55.882 | 68 | 30 | 0 | 12 | 79 | 18 | 85 | 1.20e-20 | 90.5 |
| MS.gene065776.t1 | MTR_5g089170 | 57.353 | 68 | 29 | 0 | 12 | 79 | 25 | 92 | 6.05e-20 | 87.8 |
| MS.gene065776.t1 | MTR_4g088900 | 55.224 | 67 | 26 | 1 | 12 | 74 | 33 | 99 | 2.34e-16 | 77.0 |
| MS.gene065776.t1 | MTR_4g045757 | 55.000 | 60 | 27 | 0 | 10 | 69 | 12 | 71 | 3.46e-16 | 72.8 |
| MS.gene065776.t1 | MTR_7g091370 | 52.459 | 61 | 29 | 0 | 12 | 72 | 22 | 82 | 7.71e-16 | 75.9 |
| MS.gene065776.t1 | MTR_1g061170 | 27.907 | 215 | 121 | 7 | 72 | 269 | 33 | 230 | 8.99e-16 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065776.t1 | AT5G16820 | 50.329 | 304 | 109 | 5 | 10 | 272 | 25 | 327 | 9.26e-83 | 258 |
| MS.gene065776.t1 | AT5G16820 | 50.329 | 304 | 109 | 5 | 10 | 272 | 25 | 327 | 9.26e-83 | 258 |
| MS.gene065776.t1 | AT1G32330 | 46.855 | 318 | 123 | 9 | 3 | 277 | 28 | 342 | 3.22e-76 | 241 |
| MS.gene065776.t1 | AT1G32330 | 46.855 | 318 | 123 | 9 | 3 | 277 | 28 | 342 | 4.02e-76 | 241 |
| MS.gene065776.t1 | AT3G02990 | 48.495 | 299 | 110 | 6 | 10 | 267 | 21 | 316 | 2.43e-75 | 239 |
| MS.gene065776.t1 | AT4G17750 | 45.000 | 360 | 135 | 14 | 6 | 316 | 46 | 391 | 9.56e-73 | 233 |
| MS.gene065776.t1 | AT2G26150 | 43.810 | 210 | 80 | 4 | 11 | 188 | 43 | 246 | 1.27e-48 | 166 |
| MS.gene065776.t1 | AT2G26150 | 43.810 | 210 | 80 | 4 | 11 | 188 | 43 | 246 | 1.27e-48 | 166 |
| MS.gene065776.t1 | AT3G22830 | 40.865 | 208 | 92 | 3 | 11 | 187 | 60 | 267 | 1.32e-40 | 146 |
| MS.gene065776.t1 | AT1G67970 | 34.545 | 275 | 131 | 9 | 10 | 246 | 17 | 280 | 8.24e-34 | 127 |
| MS.gene065776.t1 | AT5G03720 | 34.728 | 239 | 105 | 8 | 10 | 213 | 53 | 275 | 4.17e-32 | 124 |
| MS.gene065776.t1 | AT5G03720 | 34.728 | 239 | 105 | 8 | 10 | 213 | 53 | 275 | 4.17e-32 | 124 |
| MS.gene065776.t1 | AT3G51910 | 37.931 | 203 | 99 | 8 | 4 | 186 | 21 | 216 | 8.75e-32 | 120 |
| MS.gene065776.t1 | AT4G13980 | 35.266 | 207 | 91 | 5 | 13 | 188 | 24 | 218 | 2.11e-31 | 122 |
| MS.gene065776.t1 | AT3G24520 | 34.826 | 201 | 92 | 6 | 9 | 188 | 14 | 196 | 2.44e-30 | 117 |
| MS.gene065776.t1 | AT5G43840 | 34.975 | 203 | 84 | 7 | 11 | 190 | 16 | 193 | 1.51e-25 | 103 |
| MS.gene065776.t1 | AT5G45710 | 28.939 | 311 | 162 | 12 | 10 | 285 | 11 | 297 | 2.01e-25 | 104 |
| MS.gene065776.t1 | AT5G45710 | 28.939 | 311 | 162 | 12 | 10 | 285 | 11 | 297 | 2.01e-25 | 104 |
| MS.gene065776.t1 | AT5G54070 | 31.746 | 189 | 96 | 4 | 9 | 173 | 68 | 247 | 2.97e-24 | 101 |
| MS.gene065776.t1 | AT4G18880 | 33.953 | 215 | 102 | 5 | 4 | 188 | 7 | 211 | 1.53e-23 | 100 |
| MS.gene065776.t1 | AT3G63350 | 35.106 | 188 | 94 | 5 | 12 | 175 | 28 | 211 | 6.77e-23 | 96.3 |
| MS.gene065776.t1 | AT1G46264 | 32.642 | 193 | 94 | 3 | 1 | 157 | 23 | 215 | 1.24e-22 | 97.1 |
| MS.gene065776.t1 | AT2G26150 | 43.077 | 130 | 55 | 3 | 72 | 188 | 68 | 191 | 5.01e-22 | 94.4 |
| MS.gene065776.t1 | AT2G26150 | 43.077 | 130 | 55 | 3 | 72 | 188 | 68 | 191 | 5.01e-22 | 94.4 |
| MS.gene065776.t1 | AT5G62020 | 57.353 | 68 | 29 | 0 | 12 | 79 | 23 | 90 | 1.33e-21 | 93.2 |
| MS.gene065776.t1 | AT4G36990 | 41.221 | 131 | 44 | 3 | 1 | 110 | 1 | 119 | 2.16e-21 | 92.4 |
| MS.gene065776.t1 | AT4G11660 | 51.471 | 68 | 33 | 0 | 12 | 79 | 59 | 126 | 3.00e-19 | 87.8 |
| MS.gene065776.t1 | AT2G41690 | 39.000 | 100 | 42 | 1 | 11 | 91 | 39 | 138 | 5.70e-17 | 79.3 |
Find 0 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCAGATTTTCTTAATTA+GGG | - | 33245:8989-9008 | MS.gene065776:CDS | 15.0% |
| !! | ATGTTATTAAAAAAGCAAGA+AGG | + | 33245:9554-9573 | MS.gene065776:intergenic | 20.0% |
| !! | CAATCTTAGAAAATATTCAT+CGG | + | 33245:9292-9311 | MS.gene065776:intergenic | 20.0% |
| !! | CTAATTAAGAAAATCTGAAA+AGG | + | 33245:8990-9009 | MS.gene065776:intergenic | 20.0% |
| !! | TAACATACATTTAATAATGC+TGG | - | 33245:9568-9587 | MS.gene065776:CDS | 20.0% |
| !!! | CATTTGTTAAAGATATCAAT+AGG | - | 33245:9736-9755 | MS.gene065776:intron | 20.0% |
| !!! | CTTTTCAGATTTTCTTAATT+AGG | - | 33245:8988-9007 | MS.gene065776:CDS | 20.0% |
| !!! | TTAAGTAGTAATAGGATTTT+AGG | - | 33245:9427-9446 | MS.gene065776:intron | 20.0% |
| !!! | TTGTTGTGTTTGAAATATTT+AGG | + | 33245:8917-8936 | MS.gene065776:intergenic | 20.0% |
| ! | ATAACCAATTGGTAAATGTT+GGG | - | 33245:9941-9960 | MS.gene065776:intron | 25.0% |
| ! | CAAAATCCAAAATATTGTCT+TGG | + | 33245:10520-10539 | MS.gene065776:intergenic | 25.0% |
| ! | GTTCAGATCATATTAACTTA+TGG | - | 33245:9032-9051 | MS.gene065776:CDS | 25.0% |
| ! | TTGTTAAAGATATCAATAGG+CGG | - | 33245:9739-9758 | MS.gene065776:intron | 25.0% |
| !! | AATCCTGATCAAAATTTTGT+GGG | - | 33245:10578-10597 | MS.gene065776:CDS | 25.0% |
| !! | CTTAATTGTAATTTGGTGAT+TGG | - | 33245:9138-9157 | MS.gene065776:CDS | 25.0% |
| !! | TGTAATTAGAGAAGTACATT+CGG | - | 33245:9176-9195 | MS.gene065776:CDS | 25.0% |
| !! | TTATGGACGAAGATTTTATT+AGG | - | 33245:9049-9068 | MS.gene065776:CDS | 25.0% |
| !! | TTGTATACTTTTAATCATGC+TGG | - | 33245:9603-9622 | MS.gene065776:CDS | 25.0% |
| !!! | AGTAATAGGATTTTAGGTTA+TGG | - | 33245:9433-9452 | MS.gene065776:intron | 25.0% |
| !!! | ATCTTTTTTATTCACAAGCA+GGG | - | 33245:9649-9668 | MS.gene065776:intron | 25.0% |
| !!! | CAAGACAATATTTTGGATTT+TGG | - | 33245:10518-10537 | MS.gene065776:CDS | 25.0% |
| !!! | CGATGAATATTTTCTAAGAT+TGG | - | 33245:9290-9309 | MS.gene065776:CDS | 25.0% |
| !!! | TATCTTTTTTATTCACAAGC+AGG | - | 33245:9648-9667 | MS.gene065776:intron | 25.0% |
| !!! | TATTTTCTAAGATTGGATGT+AGG | - | 33245:9297-9316 | MS.gene065776:CDS | 25.0% |
| !!! | TTTTAGGTTATGGTTAAGAT+AGG | - | 33245:9443-9462 | MS.gene065776:intron | 25.0% |
| ACTAACTAATGAATCCCAAT+AGG | + | 33245:9472-9491 | MS.gene065776:intergenic | 30.0% | |
| ATATTTAGGCAAGATGTGTT+TGG | + | 33245:8903-8922 | MS.gene065776:intergenic | 30.0% | |
| ATTAAAAAAGCAAGAAGGAG+AGG | + | 33245:9549-9568 | MS.gene065776:intergenic | 30.0% | |
| CTAACTAATGAATCCCAATA+GGG | + | 33245:9471-9490 | MS.gene065776:intergenic | 30.0% | |
| GACTGCAATTAAGTAGTAAT+AGG | - | 33245:9419-9438 | MS.gene065776:intron | 30.0% | |
| GATAACCAATTGGTAAATGT+TGG | - | 33245:9940-9959 | MS.gene065776:intron | 30.0% | |
| TGTTAGAACTGAATTCTACA+CGG | - | 33245:9383-9402 | MS.gene065776:CDS | 30.0% | |
| ! | ATCCTGATCAAAATTTTGTG+GGG | - | 33245:10579-10598 | MS.gene065776:CDS | 30.0% |
| ! | GAATCCTGATCAAAATTTTG+TGG | - | 33245:10577-10596 | MS.gene065776:CDS | 30.0% |
| ! | GTAATTAGAGAAGTACATTC+GGG | - | 33245:9177-9196 | MS.gene065776:CDS | 30.0% |
| AAGAGGATTATGTGGATTCT+TGG | + | 33245:10142-10161 | MS.gene065776:intergenic | 35.0% | |
| AAGAGGTTGAAAGACTGAAA+AGG | - | 33245:9859-9878 | MS.gene065776:intron | 35.0% | |
| AAGTGTTACACCAGAAACTT+GGG | + | 33245:10339-10358 | MS.gene065776:intergenic | 35.0% | |
| AATCCACATAATCCTCTTGA+GGG | - | 33245:10144-10163 | MS.gene065776:intron | 35.0% | |
| ACAATCGACTGATAACCAAT+TGG | - | 33245:9930-9949 | MS.gene065776:intron | 35.0% | |
| ACTACTGCTATCTAATGGAA+TGG | + | 33245:10309-10328 | MS.gene065776:intergenic | 35.0% | |
| AGAGGTTGAAAGACTGAAAA+GGG | - | 33245:9860-9879 | MS.gene065776:intron | 35.0% | |
| CAAGATGTGTTTGGAGAAAT+CGG | + | 33245:8894-8913 | MS.gene065776:intergenic | 35.0% | |
| CATCAATAAGGAATGCATCA+AGG | + | 33245:10274-10293 | MS.gene065776:intergenic | 35.0% | |
| CATTTGCAAACTGCAAAAAG+TGG | + | 33245:9365-9384 | MS.gene065776:intergenic | 35.0% | |
| CTGAAGGAACATCATCAATA+AGG | + | 33245:10286-10305 | MS.gene065776:intergenic | 35.0% | |
| GAACGCGCTTAATTGTAATT+TGG | - | 33245:9131-9150 | MS.gene065776:CDS | 35.0% | |
| GATGAACTACTGCTATCTAA+TGG | + | 33245:10314-10333 | MS.gene065776:intergenic | 35.0% | |
| GCTATTGTCATACAACTTAC+AGG | + | 33245:10416-10435 | MS.gene065776:intergenic | 35.0% | |
| GGTAAAGTAAGAACATACGT+AGG | + | 33245:8969-8988 | MS.gene065776:intergenic | 35.0% | |
| GTTAAGATAGGTACCCTATT+GGG | - | 33245:9455-9474 | MS.gene065776:intron | 35.0% | |
| TAACATTTCCAAGAGTTTCG+TGG | - | 33245:9320-9339 | MS.gene065776:CDS | 35.0% | |
| TTTGCAGCCTCATTAATAGA+AGG | + | 33245:10189-10208 | MS.gene065776:intergenic | 35.0% | |
| ! | AAAGTGTTACACCAGAAACT+TGG | + | 33245:10340-10359 | MS.gene065776:intergenic | 35.0% |
| ! | AGCACACCAAGACAATATTT+TGG | - | 33245:10511-10530 | MS.gene065776:CDS | 35.0% |
| ! | CGCTCATGAAGGATTTTTAA+GGG | - | 33245:9705-9724 | MS.gene065776:intron | 35.0% |
| ! | GGTAAATTCTGGAAATTCAG+CGG | + | 33245:10488-10507 | MS.gene065776:intergenic | 35.0% |
| ! | TCGCTCATGAAGGATTTTTA+AGG | - | 33245:9704-9723 | MS.gene065776:intron | 35.0% |
| ! | TGTAATTTGGTGATTGGAGA+GGG | - | 33245:9144-9163 | MS.gene065776:CDS | 35.0% |
| ! | TTGTAATTTGGTGATTGGAG+AGG | - | 33245:9143-9162 | MS.gene065776:CDS | 35.0% |
| !! | GCTCATGAAGGATTTTTAAG+GGG | - | 33245:9706-9725 | MS.gene065776:intron | 35.0% |
| !! | TTGGATTTTGGTGAAGTTCA+AGG | - | 33245:10530-10549 | MS.gene065776:CDS | 35.0% |
| AACCGAATCGATCGTTTCAT+GGG | - | 33245:8832-8851 | MS.gene065776:intron | 40.0% | |
| ACAGTAACAGTAACACTAGC+AGG | + | 33245:9242-9261 | MS.gene065776:intergenic | 40.0% | |
| AGAGTCATCAACCATATCGT+AGG | + | 33245:8810-8829 | MS.gene065776:intergenic | 40.0% | |
| AGGATTATGTGGATTCTTGG+TGG | + | 33245:10139-10158 | MS.gene065776:intergenic | 40.0% | |
| AGTAATAGACATGTTACCGC+TGG | - | 33245:10072-10091 | MS.gene065776:intron | 40.0% | |
| AGTACATTCGGGATGCATTT+CGG | - | 33245:9188-9207 | MS.gene065776:CDS | 40.0% | |
| ATACATGACTGCCCAGAAAT+AGG | + | 33245:10374-10393 | MS.gene065776:intergenic | 40.0% | |
| ATGTTACCGCTGGTAAAAAG+AGG | - | 33245:10082-10101 | MS.gene065776:intron | 40.0% | |
| ATTTCCAAGAGTTTCGTGGA+AGG | - | 33245:9324-9343 | MS.gene065776:CDS | 40.0% | |
| CAAAGTCAAGATACTTGTCC+TGG | - | 33245:9504-9523 | MS.gene065776:CDS | 40.0% | |
| CCTAAGCAAAACCTACGATA+TGG | - | 33245:8796-8815 | MS.gene065776:CDS | 40.0% | |
| CGGAAATCTACTCATGCAAA+TGG | - | 33245:9759-9778 | MS.gene065776:intron | 40.0% | |
| CTATCTAATGGAATGGCTGA+AGG | + | 33245:10302-10321 | MS.gene065776:intergenic | 40.0% | |
| GAATCCACATAATCCTCTTG+AGG | - | 33245:10143-10162 | MS.gene065776:intron | 40.0% | |
| GAATGCATCAAGGTTCTTGA+TGG | + | 33245:10264-10283 | MS.gene065776:intergenic | 40.0% | |
| GGTTAAGATAGGTACCCTAT+TGG | - | 33245:9454-9473 | MS.gene065776:intron | 40.0% | |
| GTACCAGCCTTCTATTAATG+AGG | - | 33245:10179-10198 | MS.gene065776:intron | 40.0% | |
| GTATGACAATAGCATGTCTG+AGG | - | 33245:10423-10442 | MS.gene065776:CDS | 40.0% | |
| GTTGCCCAACATTTACCAAT+TGG | + | 33245:9948-9967 | MS.gene065776:intergenic | 40.0% | |
| TAAGTTTGGGCTTGATGAAG+AGG | - | 33245:9842-9861 | MS.gene065776:intron | 40.0% | |
| TGCAAATGACAGTTCTGCAA+GGG | - | 33245:10229-10248 | MS.gene065776:intron | 40.0% | |
| TTCAATTGTCTGACGAAGCT+GGG | + | 33245:8944-8963 | MS.gene065776:intergenic | 40.0% | |
| TTCTGGTGTAACACTTTCTG+AGG | - | 33245:10343-10362 | MS.gene065776:intron | 40.0% | |
| TTGCAAATGACAGTTCTGCA+AGG | - | 33245:10228-10247 | MS.gene065776:intron | 40.0% | |
| ! | ATATTGTCTTGGTGTGCTGT+TGG | + | 33245:10509-10528 | MS.gene065776:intergenic | 40.0% |
| ! | CCATATCGTAGGTTTTGCTT+AGG | + | 33245:8799-8818 | MS.gene065776:intergenic | 40.0% |
| ! | GAACTGTCATTTGCAACATC+TGG | + | 33245:10224-10243 | MS.gene065776:intergenic | 40.0% |
| ! | TCGTAGGTTTTGCTTAGGAA+CGG | + | 33245:8794-8813 | MS.gene065776:intergenic | 40.0% |
| ! | TGCTAGTGTTACTGTTACTG+TGG | - | 33245:9241-9260 | MS.gene065776:CDS | 40.0% |
| ! | TTTTGGTGAAGTTCAAGGAC+TGG | - | 33245:10535-10554 | MS.gene065776:CDS | 40.0% |
| !! | GACCCCACAAAATTTTGATC+AGG | + | 33245:10584-10603 | MS.gene065776:intergenic | 40.0% |
| !! | TATTTCTGGGCAGTCATGTA+TGG | - | 33245:10373-10392 | MS.gene065776:intron | 40.0% |
| !!! | TCACAAGCAGGGTTTTAGAA+AGG | - | 33245:9660-9679 | MS.gene065776:intron | 40.0% |
| AAATGACAGTTCTGCAAGGG+TGG | - | 33245:10232-10251 | MS.gene065776:intron | 45.0% | |
| ACACAATCAGTCAACACAGC+AGG | + | 33245:10460-10479 | MS.gene065776:intergenic | 45.0% | |
| ACCCCATGAAACGATCGATT+CGG | + | 33245:8837-8856 | MS.gene065776:intergenic | 45.0% | |
| ACCGAATCGATCGTTTCATG+GGG | - | 33245:8833-8852 | MS.gene065776:intron | 45.0% | |
| AGCAAAGGCCATGAATAGTC+CGG | - | 33245:10014-10033 | MS.gene065776:intron | 45.0% | |
| AGTTCATCCACCCAAGTTTC+TGG | - | 33245:10326-10345 | MS.gene065776:intron | 45.0% | |
| ATATTCATCGGTACACCGAG+CGG | + | 33245:9280-9299 | MS.gene065776:intergenic | 45.0% | |
| CAACCGAATCGATCGTTTCA+TGG | - | 33245:8831-8850 | MS.gene065776:intron | 45.0% | |
| CAGCCTCATTAATAGAAGGC+TGG | + | 33245:10185-10204 | MS.gene065776:intergenic | 45.0% | |
| CATTCCTTCCACGAAACTCT+TGG | + | 33245:9331-9350 | MS.gene065776:intergenic | 45.0% | |
| GAAAATTGAGCCATGAAGCC+CGG | + | 33245:10036-10055 | MS.gene065776:intergenic | 45.0% | |
| GACTATTCATGGCCTTTGCT+AGG | + | 33245:10014-10033 | MS.gene065776:intergenic | 45.0% | |
| GATGATGTCGTTCCTAGCAA+AGG | - | 33245:9999-10018 | MS.gene065776:intron | 45.0% | |
| GATGTGTTTGGAGAAATCGG+TGG | + | 33245:8891-8910 | MS.gene065776:intergenic | 45.0% | |
| GGTGGAATTGAAAACGACGA+AGG | + | 33245:8873-8892 | MS.gene065776:intergenic | 45.0% | |
| GTGTGGAAGTGGGTAAGTTT+GGG | - | 33245:9829-9848 | MS.gene065776:intron | 45.0% | |
| GTTCAATTGTCTGACGAAGC+TGG | + | 33245:8945-8964 | MS.gene065776:intergenic | 45.0% | |
| TGCAAACTGCAAAAAGTGGC+TGG | + | 33245:9361-9380 | MS.gene065776:intergenic | 45.0% | |
| TGCATCAAGGTTCTTGATGG+AGG | + | 33245:10261-10280 | MS.gene065776:intergenic | 45.0% | |
| TGTGTGGAAGTGGGTAAGTT+TGG | - | 33245:9828-9847 | MS.gene065776:intron | 45.0% | |
| TGTTACACCAGAAACTTGGG+TGG | + | 33245:10336-10355 | MS.gene065776:intergenic | 45.0% | |
| TTAACAACACGTCCCTCAAG+AGG | + | 33245:10159-10178 | MS.gene065776:intergenic | 45.0% | |
| TTACCGCTGGTAAAAAGAGG+CGG | - | 33245:10085-10104 | MS.gene065776:intron | 45.0% | |
| ! | CTGAGGTTCCACCTATTTCT+GGG | - | 33245:10360-10379 | MS.gene065776:intron | 45.0% |
| ! | GGTGTGCTGTTGGTAAATTC+TGG | + | 33245:10499-10518 | MS.gene065776:intergenic | 45.0% |
| ! | TAGGTTTTGCTTAGGAACGG+TGG | + | 33245:8791-8810 | MS.gene065776:intergenic | 45.0% |
| ! | TCTGAGGTTCCACCTATTTC+TGG | - | 33245:10359-10378 | MS.gene065776:intron | 45.0% |
| AACTATCTTCATCCTGCCCC+TGG | + | 33245:10113-10132 | MS.gene065776:intergenic | 50.0% | |
| ACTTCCACACATGACCCAAC+AGG | + | 33245:9819-9838 | MS.gene065776:intergenic | 50.0% | |
| AGATACTTGTCCTGGTGCTC+TGG | - | 33245:9512-9531 | MS.gene065776:CDS | 50.0% | |
| CATGAAGCCCGGACTATTCA+TGG | + | 33245:10025-10044 | MS.gene065776:intergenic | 50.0% | |
| CATGAATAGTCCGGGCTTCA+TGG | - | 33245:10023-10042 | MS.gene065776:intron | 50.0% | |
| CATGACTGCCCAGAAATAGG+TGG | + | 33245:10371-10390 | MS.gene065776:intergenic | 50.0% | |
| CGTCCCTCAAGAGGATTATG+TGG | + | 33245:10150-10169 | MS.gene065776:intergenic | 50.0% | |
| CTTCATGAGCGAATTCCCAG+CGG | + | 33245:9696-9715 | MS.gene065776:intergenic | 50.0% | |
| GCAAAGGCCATGAATAGTCC+GGG | - | 33245:10015-10034 | MS.gene065776:intron | 50.0% | |
| GTTGGGTCATGTGTGGAAGT+GGG | - | 33245:9819-9838 | MS.gene065776:intron | 50.0% | |
| TGTTGGGTCATGTGTGGAAG+TGG | - | 33245:9818-9837 | MS.gene065776:intron | 50.0% | |
| ! | AAATTCAGCACCAGAGCACC+AGG | + | 33245:9525-9544 | MS.gene065776:intergenic | 50.0% |
| ATGAGCGAATTCCCAGCGGT+CGG | + | 33245:9692-9711 | MS.gene065776:intergenic | 55.0% | |
| CCACACATGACCCAACAGGT+GGG | + | 33245:9815-9834 | MS.gene065776:intergenic | 55.0% | |
| CGCTGGGAATTCGCTCATGA+AGG | - | 33245:9694-9713 | MS.gene065776:intron | 55.0% | |
| GGTAAAAAGAGGCGGCTCCA+GGG | - | 33245:10093-10112 | MS.gene065776:intron | 55.0% | |
| GTAAAAAGAGGCGGCTCCAG+GGG | - | 33245:10094-10113 | MS.gene065776:intron | 55.0% | |
| TCCACACATGACCCAACAGG+TGG | + | 33245:9816-9835 | MS.gene065776:intergenic | 55.0% | |
| TGGGCAACGTGTGCAAGTGA+TGG | - | 33245:9960-9979 | MS.gene065776:intron | 55.0% | |
| TGGTAAAAAGAGGCGGCTCC+AGG | - | 33245:10092-10111 | MS.gene065776:intron | 55.0% | |
| ! | GAGCCGCCTCTTTTTACCAG+CGG | + | 33245:10091-10110 | MS.gene065776:intergenic | 55.0% |
| AAAGGTTGACCCCGACCGCT+GGG | - | 33245:9678-9697 | MS.gene065776:intron | 60.0% | |
| AAGCCGCAGAACCCACCTGT+TGG | - | 33245:9801-9820 | MS.gene065776:intron | 60.0% | |
| AGCCGCAGAACCCACCTGTT+GGG | - | 33245:9802-9821 | MS.gene065776:intron | 60.0% | |
| CCCACCTGTTGGGTCATGTG+TGG | - | 33245:9812-9831 | MS.gene065776:intron | 60.0% | |
| GGTGATTGGAGAGGGAGCTG+TGG | - | 33245:9152-9171 | MS.gene065776:CDS | 60.0% | |
| TGAGCGAATTCCCAGCGGTC+GGG | + | 33245:9691-9710 | MS.gene065776:intergenic | 60.0% | |
| ! | GACCCAACAGGTGGGTTCTG+CGG | + | 33245:9807-9826 | MS.gene065776:intergenic | 60.0% |
| CGGTACACCGAGCGGAAGCA+TGG | + | 33245:9272-9291 | MS.gene065776:intergenic | 65.0% | |
| GAAAGGTTGACCCCGACCGC+TGG | - | 33245:9677-9696 | MS.gene065776:intron | 65.0% | |
| GAGCGAATTCCCAGCGGTCG+GGG | + | 33245:9690-9709 | MS.gene065776:intergenic | 65.0% | |
| ! | GGTGCTGCCATGCTTCCGCT+CGG | - | 33245:9262-9281 | MS.gene065776:CDS | 65.0% |
| AAAGAGGCGGCTCCAGGGGC+AGG | - | 33245:10098-10117 | MS.gene065776:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 33245 | gene | 8758 | 10604 | 8758 | ID=MS.gene065776 |
| 33245 | mRNA | 8758 | 10604 | 8758 | ID=MS.gene065776.t1;Parent=MS.gene065776 |
| 33245 | exon | 10392 | 10604 | 10392 | ID=MS.gene065776.t1.exon1;Parent=MS.gene065776.t1 |
| 33245 | CDS | 10392 | 10604 | 10392 | ID=cds.MS.gene065776.t1;Parent=MS.gene065776.t1 |
| 33245 | exon | 9472 | 9636 | 9472 | ID=MS.gene065776.t1.exon2;Parent=MS.gene065776.t1 |
| 33245 | CDS | 9472 | 9636 | 9472 | ID=cds.MS.gene065776.t1;Parent=MS.gene065776.t1 |
| 33245 | exon | 9123 | 9437 | 9123 | ID=MS.gene065776.t1.exon3;Parent=MS.gene065776.t1 |
| 33245 | CDS | 9123 | 9437 | 9123 | ID=cds.MS.gene065776.t1;Parent=MS.gene065776.t1 |
| 33245 | exon | 8925 | 9093 | 8925 | ID=MS.gene065776.t1.exon4;Parent=MS.gene065776.t1 |
| 33245 | CDS | 8925 | 9093 | 8925 | ID=cds.MS.gene065776.t1;Parent=MS.gene065776.t1 |
| 33245 | exon | 8758 | 8849 | 8758 | ID=MS.gene065776.t1.exon5;Parent=MS.gene065776.t1 |
| 33245 | CDS | 8758 | 8849 | 8758 | ID=cds.MS.gene065776.t1;Parent=MS.gene065776.t1 |
| Gene Sequence |
| Protein sequence |
