Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065780.t1 | XP_024638164.1 | 98.2 | 493 | 9 | 0 | 1 | 493 | 1 | 493 | 2.80E-270 | 940.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065780.t1 | Q84T61 | 49.6 | 492 | 208 | 14 | 14 | 490 | 39 | 505 | 1.8e-103 | 377.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065780.t1 | G7JSS3 | 98.2 | 493 | 9 | 0 | 1 | 493 | 1 | 493 | 2.0e-270 | 940.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene065780.t1 | TF | HSF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065780.t1 | MTR_4g077970 | 98.174 | 493 | 9 | 0 | 1 | 493 | 1 | 493 | 0.0 | 1006 |
| MS.gene065780.t1 | MTR_4g077970 | 97.977 | 346 | 7 | 0 | 148 | 493 | 1 | 346 | 0.0 | 694 |
| MS.gene065780.t1 | MTR_5g029680 | 46.800 | 500 | 214 | 17 | 11 | 489 | 31 | 499 | 8.41e-128 | 381 |
| MS.gene065780.t1 | MTR_3g104550 | 54.260 | 223 | 90 | 3 | 11 | 233 | 45 | 255 | 3.83e-74 | 239 |
| MS.gene065780.t1 | MTR_7g095680 | 56.522 | 207 | 87 | 1 | 11 | 217 | 48 | 251 | 4.68e-74 | 238 |
| MS.gene065780.t1 | MTR_1g102860 | 55.714 | 210 | 82 | 4 | 11 | 217 | 39 | 240 | 1.54e-69 | 225 |
| MS.gene065780.t1 | MTR_1g061170 | 41.254 | 303 | 151 | 6 | 10 | 309 | 47 | 325 | 2.54e-69 | 229 |
| MS.gene065780.t1 | MTR_1g071360 | 51.643 | 213 | 83 | 3 | 12 | 221 | 32 | 227 | 2.96e-63 | 209 |
| MS.gene065780.t1 | MTR_1g071360 | 51.174 | 213 | 84 | 3 | 12 | 221 | 29 | 224 | 5.38e-63 | 209 |
| MS.gene065780.t1 | MTR_8g105780 | 42.537 | 268 | 146 | 2 | 12 | 278 | 22 | 282 | 7.99e-63 | 209 |
| MS.gene065780.t1 | MTR_2g100680 | 43.602 | 211 | 108 | 2 | 12 | 222 | 31 | 230 | 2.72e-54 | 189 |
| MS.gene065780.t1 | MTR_8g083100 | 45.498 | 211 | 103 | 3 | 13 | 223 | 23 | 221 | 5.54e-54 | 189 |
| MS.gene065780.t1 | MTR_6g043060 | 42.986 | 221 | 114 | 3 | 2 | 222 | 12 | 220 | 6.03e-54 | 184 |
| MS.gene065780.t1 | MTR_8g087540 | 44.865 | 185 | 94 | 2 | 10 | 193 | 10 | 187 | 5.63e-52 | 181 |
| MS.gene065780.t1 | MTR_2g100670 | 46.486 | 185 | 89 | 1 | 12 | 196 | 33 | 207 | 3.54e-51 | 176 |
| MS.gene065780.t1 | MTR_6g086805 | 44.811 | 212 | 105 | 6 | 7 | 218 | 6 | 205 | 1.02e-50 | 176 |
| MS.gene065780.t1 | MTR_2g100670 | 46.486 | 185 | 89 | 1 | 12 | 196 | 141 | 315 | 3.63e-50 | 177 |
| MS.gene065780.t1 | MTR_2g017890 | 39.683 | 189 | 103 | 2 | 10 | 194 | 13 | 194 | 1.73e-44 | 160 |
| MS.gene065780.t1 | MTR_5g010680 | 65.217 | 92 | 32 | 0 | 12 | 103 | 24 | 115 | 1.20e-39 | 147 |
| MS.gene065780.t1 | MTR_3g101870 | 42.640 | 197 | 64 | 4 | 9 | 156 | 21 | 217 | 2.13e-39 | 147 |
| MS.gene065780.t1 | MTR_0020s0020 | 65.217 | 92 | 32 | 0 | 12 | 103 | 33 | 124 | 9.15e-38 | 141 |
| MS.gene065780.t1 | MTR_1g061170 | 35.685 | 241 | 128 | 6 | 72 | 309 | 14 | 230 | 4.29e-37 | 140 |
| MS.gene065780.t1 | MTR_5g017470 | 62.366 | 93 | 35 | 0 | 12 | 104 | 9 | 101 | 8.16e-37 | 137 |
| MS.gene065780.t1 | MTR_1g100777 | 60.870 | 92 | 36 | 0 | 12 | 103 | 18 | 109 | 6.80e-36 | 135 |
| MS.gene065780.t1 | MTR_5g089170 | 61.290 | 93 | 36 | 0 | 12 | 104 | 25 | 117 | 2.49e-34 | 130 |
| MS.gene065780.t1 | MTR_7g091370 | 42.484 | 153 | 77 | 2 | 12 | 157 | 22 | 170 | 2.83e-31 | 120 |
| MS.gene065780.t1 | MTR_4g088900 | 54.639 | 97 | 40 | 1 | 12 | 104 | 33 | 129 | 1.55e-30 | 118 |
| MS.gene065780.t1 | MTR_5g047190 | 48.936 | 94 | 41 | 2 | 20 | 106 | 1 | 94 | 1.85e-21 | 89.4 |
| MS.gene065780.t1 | MTR_6g044340 | 28.910 | 211 | 129 | 6 | 58 | 267 | 8 | 198 | 4.08e-18 | 84.7 |
| MS.gene065780.t1 | MTR_4g045757 | 58.333 | 60 | 25 | 0 | 10 | 69 | 12 | 71 | 9.69e-18 | 78.2 |
| MS.gene065780.t1 | MTR_2g043940 | 32.593 | 135 | 70 | 3 | 69 | 193 | 17 | 140 | 4.04e-14 | 74.3 |
| MS.gene065780.t1 | MTR_1g061170 | 30.909 | 165 | 95 | 4 | 148 | 309 | 1 | 149 | 1.72e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065780.t1 | AT5G16820 | 48.491 | 497 | 196 | 11 | 10 | 489 | 25 | 478 | 1.62e-136 | 403 |
| MS.gene065780.t1 | AT5G16820 | 48.491 | 497 | 196 | 11 | 10 | 489 | 25 | 478 | 1.62e-136 | 403 |
| MS.gene065780.t1 | AT3G02990 | 48.441 | 481 | 211 | 9 | 10 | 489 | 21 | 465 | 1.97e-131 | 389 |
| MS.gene065780.t1 | AT1G32330 | 44.177 | 498 | 219 | 14 | 3 | 489 | 28 | 477 | 2.10e-116 | 351 |
| MS.gene065780.t1 | AT1G32330 | 44.177 | 498 | 219 | 14 | 3 | 489 | 28 | 477 | 3.08e-116 | 351 |
| MS.gene065780.t1 | AT4G17750 | 43.340 | 503 | 211 | 16 | 6 | 489 | 46 | 493 | 4.97e-111 | 338 |
| MS.gene065780.t1 | AT2G26150 | 58.095 | 210 | 80 | 2 | 11 | 218 | 43 | 246 | 1.78e-80 | 254 |
| MS.gene065780.t1 | AT2G26150 | 58.095 | 210 | 80 | 2 | 11 | 218 | 43 | 246 | 1.78e-80 | 254 |
| MS.gene065780.t1 | AT3G22830 | 56.731 | 208 | 89 | 1 | 11 | 217 | 60 | 267 | 3.73e-74 | 240 |
| MS.gene065780.t1 | AT1G67970 | 44.366 | 284 | 131 | 8 | 10 | 286 | 17 | 280 | 8.49e-64 | 212 |
| MS.gene065780.t1 | AT5G03720 | 44.351 | 239 | 112 | 5 | 10 | 243 | 53 | 275 | 5.26e-61 | 206 |
| MS.gene065780.t1 | AT5G03720 | 44.351 | 239 | 112 | 5 | 10 | 243 | 53 | 275 | 5.26e-61 | 206 |
| MS.gene065780.t1 | AT3G51910 | 44.700 | 217 | 95 | 3 | 4 | 216 | 21 | 216 | 1.66e-57 | 192 |
| MS.gene065780.t1 | AT4G13980 | 44.928 | 207 | 101 | 3 | 13 | 218 | 24 | 218 | 5.86e-56 | 194 |
| MS.gene065780.t1 | AT3G24520 | 42.925 | 212 | 90 | 4 | 9 | 218 | 14 | 196 | 4.30e-52 | 179 |
| MS.gene065780.t1 | AT5G43840 | 39.834 | 241 | 102 | 6 | 11 | 244 | 16 | 220 | 1.85e-50 | 174 |
| MS.gene065780.t1 | AT4G18880 | 37.134 | 307 | 172 | 6 | 4 | 308 | 7 | 294 | 2.09e-48 | 172 |
| MS.gene065780.t1 | AT5G54070 | 41.538 | 195 | 99 | 1 | 9 | 203 | 68 | 247 | 5.88e-48 | 169 |
| MS.gene065780.t1 | AT3G63350 | 44.103 | 195 | 97 | 2 | 12 | 205 | 28 | 211 | 2.15e-47 | 166 |
| MS.gene065780.t1 | AT2G26150 | 56.376 | 149 | 57 | 2 | 72 | 218 | 49 | 191 | 4.36e-47 | 165 |
| MS.gene065780.t1 | AT2G26150 | 56.376 | 149 | 57 | 2 | 72 | 218 | 49 | 191 | 4.36e-47 | 165 |
| MS.gene065780.t1 | AT5G45710 | 40.889 | 225 | 111 | 5 | 10 | 232 | 11 | 215 | 7.68e-47 | 166 |
| MS.gene065780.t1 | AT5G45710 | 40.889 | 225 | 111 | 5 | 10 | 232 | 11 | 215 | 7.68e-47 | 166 |
| MS.gene065780.t1 | AT1G46264 | 41.624 | 197 | 74 | 3 | 1 | 156 | 23 | 219 | 9.57e-42 | 152 |
| MS.gene065780.t1 | AT5G62020 | 61.702 | 94 | 36 | 0 | 12 | 105 | 23 | 116 | 5.38e-37 | 138 |
| MS.gene065780.t1 | AT4G36990 | 52.672 | 131 | 48 | 2 | 1 | 129 | 1 | 119 | 1.25e-36 | 137 |
| MS.gene065780.t1 | AT4G11660 | 59.783 | 92 | 37 | 0 | 12 | 103 | 59 | 150 | 1.05e-34 | 134 |
| MS.gene065780.t1 | AT2G41690 | 55.000 | 100 | 45 | 0 | 11 | 110 | 39 | 138 | 7.66e-33 | 125 |
| MS.gene065780.t1 | AT4G18870 | 39.773 | 88 | 53 | 0 | 12 | 99 | 146 | 233 | 7.61e-19 | 87.4 |
| MS.gene065780.t1 | AT4G18870 | 43.820 | 89 | 45 | 2 | 13 | 99 | 14 | 99 | 1.61e-18 | 86.3 |
| MS.gene065780.t1 | AT1G77570 | 37.778 | 90 | 53 | 2 | 13 | 99 | 27 | 116 | 2.11e-15 | 73.9 |
Find 0 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTCTTAGAAAATATTCAT+CGG | + | 33246:5782-5801 | MS.gene065780:intergenic | 15.0% |
| !!! | ATTTGTTAAAGAATATCAAT+AGG | - | 33246:6228-6247 | MS.gene065780:CDS | 15.0% |
| !!! | TTTTCAGATTTTCTTAATTA+GGG | - | 33246:5479-5498 | MS.gene065780:CDS | 15.0% |
| !! | ATGTTATTAAAAAAGCAAGA+AGG | + | 33246:6045-6064 | MS.gene065780:intergenic | 20.0% |
| !! | CTAATTAAGAAAATCTGAAA+AGG | + | 33246:5480-5499 | MS.gene065780:intergenic | 20.0% |
| !! | TAACATACATTTAATAATGC+TGG | - | 33246:6059-6078 | MS.gene065780:CDS | 20.0% |
| !!! | CTTTTCAGATTTTCTTAATT+AGG | - | 33246:5478-5497 | MS.gene065780:CDS | 20.0% |
| !!! | GATGAATATTTTCTAAGAAT+TGG | - | 33246:5781-5800 | MS.gene065780:CDS | 20.0% |
| !!! | TTAAGTAGTAATAGGATTTT+AGG | - | 33246:5918-5937 | MS.gene065780:CDS | 20.0% |
| !!! | TTGTTGTGTTTGAAATATTT+AGG | + | 33246:5407-5426 | MS.gene065780:intergenic | 20.0% |
| ! | ATAACCAATTGGTAAATGTT+GGG | - | 33246:6432-6451 | MS.gene065780:CDS | 25.0% |
| ! | CAAAATCCAAAATATTGTCT+TGG | + | 33246:7012-7031 | MS.gene065780:intergenic | 25.0% |
| ! | GTAATTAGAGAAGTTACATT+CGG | - | 33246:5666-5685 | MS.gene065780:CDS | 25.0% |
| ! | GTTCAGATCATATTAACTTA+TGG | - | 33246:5522-5541 | MS.gene065780:CDS | 25.0% |
| ! | TAATTAGAGAAGTTACATTC+GGG | - | 33246:5667-5686 | MS.gene065780:CDS | 25.0% |
| ! | TGTTAAAGAATATCAATAGG+CGG | - | 33246:6231-6250 | MS.gene065780:CDS | 25.0% |
| !! | AATCCTGATCAAAATTTTGT+GGG | - | 33246:7070-7089 | MS.gene065780:intron | 25.0% |
| !! | CTTAATTGTAATTTGGTGAT+TGG | - | 33246:5627-5646 | MS.gene065780:CDS | 25.0% |
| !! | TTATGGACGAAGATTTTATT+AGG | - | 33246:5539-5558 | MS.gene065780:CDS | 25.0% |
| !! | TTGTATACTTTTAATCATGC+TGG | - | 33246:6094-6113 | MS.gene065780:CDS | 25.0% |
| !!! | AATTCTGGGAACAATTTTTT+AGG | - | 33246:7221-7240 | MS.gene065780:CDS | 25.0% |
| !!! | AGTAATAGGATTTTAGGTTA+TGG | - | 33246:5924-5943 | MS.gene065780:CDS | 25.0% |
| !!! | ATCTTTTTTATTCACAAGCA+GGG | - | 33246:6140-6159 | MS.gene065780:CDS | 25.0% |
| !!! | ATTTTCTAAGAATTGGATGT+AGG | - | 33246:5788-5807 | MS.gene065780:CDS | 25.0% |
| !!! | CAAGACAATATTTTGGATTT+TGG | - | 33246:7010-7029 | MS.gene065780:intron | 25.0% |
| !!! | TATCTTTTTTATTCACAAGC+AGG | - | 33246:6139-6158 | MS.gene065780:CDS | 25.0% |
| !!! | TTTTAGGTTATGGTTAAGAT+AGG | - | 33246:5934-5953 | MS.gene065780:CDS | 25.0% |
| ATATTTAGGCAAGATGTGTT+TGG | + | 33246:5393-5412 | MS.gene065780:intergenic | 30.0% | |
| ATTAAAAAAGCAAGAAGGAG+AGG | + | 33246:6040-6059 | MS.gene065780:intergenic | 30.0% | |
| GAAGATTCAACAAGAAAAGA+TGG | - | 33246:7333-7352 | MS.gene065780:CDS | 30.0% | |
| GACTGCAATTAAGTAGTAAT+AGG | - | 33246:5910-5929 | MS.gene065780:CDS | 30.0% | |
| GATAACCAATTGGTAAATGT+TGG | - | 33246:6431-6450 | MS.gene065780:CDS | 30.0% | |
| TAACTAATGAATCCCCAATA+GGG | + | 33246:5962-5981 | MS.gene065780:intergenic | 30.0% | |
| TGTTAGAACTGAATTCTACA+CGG | - | 33246:5874-5893 | MS.gene065780:CDS | 30.0% | |
| ! | ATCCTGATCAAAATTTTGTG+GGG | - | 33246:7071-7090 | MS.gene065780:intron | 30.0% |
| ! | GAATCCTGATCAAAATTTTG+TGG | - | 33246:7069-7088 | MS.gene065780:intron | 30.0% |
| ! | TGTAAATTCTGGAAATTCAG+CGG | + | 33246:6981-7000 | MS.gene065780:intergenic | 30.0% |
| AACTGTTCATTTGCAACATC+TGG | + | 33246:6715-6734 | MS.gene065780:intergenic | 35.0% | |
| AAGAGGATTATGTGGATTCT+TGG | + | 33246:6633-6652 | MS.gene065780:intergenic | 35.0% | |
| AAGAGGTTGAAAGACTGAAA+AGG | - | 33246:6351-6370 | MS.gene065780:CDS | 35.0% | |
| AAGTGTTACACCAGAAACTT+GGG | + | 33246:6831-6850 | MS.gene065780:intergenic | 35.0% | |
| AATCCACATAATCCTCTTGA+TGG | - | 33246:6635-6654 | MS.gene065780:intron | 35.0% | |
| AATGAAAATTCCAAGCTTCC+AGG | - | 33246:7187-7206 | MS.gene065780:intron | 35.0% | |
| ACAATCGACTGATAACCAAT+TGG | - | 33246:6421-6440 | MS.gene065780:CDS | 35.0% | |
| ACTACTGCTATCTAATGGAA+TGG | + | 33246:6801-6820 | MS.gene065780:intergenic | 35.0% | |
| AGAGGTTGAAAGACTGAAAA+GGG | - | 33246:6352-6371 | MS.gene065780:CDS | 35.0% | |
| AGGAATCAACGATGAATTCT+GGG | - | 33246:7207-7226 | MS.gene065780:intron | 35.0% | |
| ATATGGTTTGACTAAAGACC+AGG | - | 33246:7294-7313 | MS.gene065780:CDS | 35.0% | |
| CAAGATGTGTTTGGAGAAAT+CGG | + | 33246:5384-5403 | MS.gene065780:intergenic | 35.0% | |
| CATCAATAAGGAATGCATCA+AGG | + | 33246:6766-6785 | MS.gene065780:intergenic | 35.0% | |
| CATTTGCAAACTGCAAAAAG+TGG | + | 33246:5856-5875 | MS.gene065780:intergenic | 35.0% | |
| CTAACTAATGAATCCCCAAT+AGG | + | 33246:5963-5982 | MS.gene065780:intergenic | 35.0% | |
| CTATTGGTCATACAACTTAC+AGG | + | 33246:6908-6927 | MS.gene065780:intergenic | 35.0% | |
| CTGAAGGAACATCATCAATA+AGG | + | 33246:6778-6797 | MS.gene065780:intergenic | 35.0% | |
| GAACGCGCTTAATTGTAATT+TGG | - | 33246:5620-5639 | MS.gene065780:CDS | 35.0% | |
| GAAGTTAAAGGTAGTTCTCT+AGG | - | 33246:7271-7290 | MS.gene065780:CDS | 35.0% | |
| GATGAACTACTGCTATCTAA+TGG | + | 33246:6806-6825 | MS.gene065780:intergenic | 35.0% | |
| GGTAAAGTAAGAACATACGT+AGG | + | 33246:5459-5478 | MS.gene065780:intergenic | 35.0% | |
| GTTAAGATAGGTACCCTATT+GGG | - | 33246:5946-5965 | MS.gene065780:CDS | 35.0% | |
| TAACATTTCCAAGAGTTTCG+TGG | - | 33246:5811-5830 | MS.gene065780:CDS | 35.0% | |
| TCTTTGCTAATGACAATTCC+TGG | + | 33246:7315-7334 | MS.gene065780:intergenic | 35.0% | |
| TTAAGATAGGTACCCTATTG+GGG | - | 33246:5947-5966 | MS.gene065780:CDS | 35.0% | |
| TTTGCAGCCTCATTAATAGA+AGG | + | 33246:6680-6699 | MS.gene065780:intergenic | 35.0% | |
| ! | AAAGTGTTACACCAGAAACT+TGG | + | 33246:6832-6851 | MS.gene065780:intergenic | 35.0% |
| ! | AGCACACCAAGACAATATTT+TGG | - | 33246:7003-7022 | MS.gene065780:intron | 35.0% |
| ! | CGCTCATGAAGGATTTTTAA+GGG | - | 33246:6196-6215 | MS.gene065780:CDS | 35.0% |
| ! | TCGCTCATGAAGGATTTTTA+AGG | - | 33246:6195-6214 | MS.gene065780:CDS | 35.0% |
| ! | TGTAATTTGGTGATTGGAGA+GGG | - | 33246:5633-5652 | MS.gene065780:CDS | 35.0% |
| ! | TTGTAATTTGGTGATTGGAG+AGG | - | 33246:5632-5651 | MS.gene065780:CDS | 35.0% |
| !! | AAAGGTAGTTCTCTAGGATA+TGG | - | 33246:7277-7296 | MS.gene065780:CDS | 35.0% |
| !! | GCTCATGAAGGATTTTTAAG+GGG | - | 33246:6197-6216 | MS.gene065780:CDS | 35.0% |
| !! | TGATATCAGCTGTTTTGGAT+GGG | - | 33246:7125-7144 | MS.gene065780:intron | 35.0% |
| !! | TTGGATTTTGGTGAAGTTCA+AGG | - | 33246:7022-7041 | MS.gene065780:intron | 35.0% |
| AACCGAATCGATCGTTTCAT+GGG | - | 33246:5322-5341 | MS.gene065780:CDS | 40.0% | |
| ACAGATGGAACTTCTTGCAT+CGG | - | 33246:7387-7406 | MS.gene065780:CDS | 40.0% | |
| ACAGTAACAGTAACACTAGC+AGG | + | 33246:5732-5751 | MS.gene065780:intergenic | 40.0% | |
| AGAGTCATCAACCATATCGT+AGG | + | 33246:5300-5319 | MS.gene065780:intergenic | 40.0% | |
| AGGATTATGTGGATTCTTGG+TGG | + | 33246:6630-6649 | MS.gene065780:intergenic | 40.0% | |
| AGTAATAGACATGTTACCGC+TGG | - | 33246:6563-6582 | MS.gene065780:intron | 40.0% | |
| ATACATGACTGCCCAGAAAT+AGG | + | 33246:6866-6885 | MS.gene065780:intergenic | 40.0% | |
| ATGTTACCGCTGGTAAAAAG+AGG | - | 33246:6573-6592 | MS.gene065780:intron | 40.0% | |
| ATTTCCAAGAGTTTCGTGGA+AGG | - | 33246:5815-5834 | MS.gene065780:CDS | 40.0% | |
| CAAAGTCAAGATACTTGTCC+TGG | - | 33246:5995-6014 | MS.gene065780:CDS | 40.0% | |
| CAGGAATCAACGATGAATTC+TGG | - | 33246:7206-7225 | MS.gene065780:intron | 40.0% | |
| CCTAAGCAAAACCTACGATA+TGG | - | 33246:5286-5305 | MS.gene065780:CDS | 40.0% | |
| CGGAAATCTACTCATGCAAA+TGG | - | 33246:6251-6270 | MS.gene065780:CDS | 40.0% | |
| CTATCTAATGGAATGGCTGA+AGG | + | 33246:6794-6813 | MS.gene065780:intergenic | 40.0% | |
| GAATGCATCAAGGTTCTTGA+TGG | + | 33246:6756-6775 | MS.gene065780:intergenic | 40.0% | |
| GATGGATAAGATACAGCACA+TGG | - | 33246:7351-7370 | MS.gene065780:CDS | 40.0% | |
| GCAAATGAACAGTTCTGCAA+GGG | - | 33246:6721-6740 | MS.gene065780:intron | 40.0% | |
| GGTTAAGATAGGTACCCTAT+TGG | - | 33246:5945-5964 | MS.gene065780:CDS | 40.0% | |
| GTACCAGCCTTCTATTAATG+AGG | - | 33246:6670-6689 | MS.gene065780:intron | 40.0% | |
| GTTACATTCGGGATGCATTT+CGG | - | 33246:5678-5697 | MS.gene065780:CDS | 40.0% | |
| GTTCCATCTGTTGAGTAAGA+TGG | + | 33246:7378-7397 | MS.gene065780:intergenic | 40.0% | |
| GTTGCCCAACATTTACCAAT+TGG | + | 33246:6439-6458 | MS.gene065780:intergenic | 40.0% | |
| TAAGTTTGGGCTTGATGAAG+AGG | - | 33246:6334-6353 | MS.gene065780:CDS | 40.0% | |
| TATGACCAATAGCATGTCTG+AGG | - | 33246:6916-6935 | MS.gene065780:intron | 40.0% | |
| TGCAAATGAACAGTTCTGCA+AGG | - | 33246:6720-6739 | MS.gene065780:intron | 40.0% | |
| TTAACAACACGTCCATCAAG+AGG | + | 33246:6650-6669 | MS.gene065780:intergenic | 40.0% | |
| TTCTGGTGTAACACTTTCTG+AGG | - | 33246:6835-6854 | MS.gene065780:intron | 40.0% | |
| TTGTACCTCAGACATGCTAT+TGG | + | 33246:6924-6943 | MS.gene065780:intergenic | 40.0% | |
| ! | CAAAATTTTGTGGGGTCTGT+CGG | - | 33246:7079-7098 | MS.gene065780:intron | 40.0% |
| ! | CCATATCGTAGGTTTTGCTT+AGG | + | 33246:5289-5308 | MS.gene065780:intergenic | 40.0% |
| ! | CGGTGAGAATGATGATGAAT+TGG | - | 33246:7099-7118 | MS.gene065780:intron | 40.0% |
| ! | GGATGTGATATCAGCTGTTT+TGG | - | 33246:7120-7139 | MS.gene065780:intron | 40.0% |
| ! | TCGTAGGTTTTGCTTAGGAA+CGG | + | 33246:5284-5303 | MS.gene065780:intergenic | 40.0% |
| ! | TGCTAGTGTTACTGTTACTG+TGG | - | 33246:5731-5750 | MS.gene065780:CDS | 40.0% |
| ! | TGGTGTGCTGTTGTAAATTC+TGG | + | 33246:6992-7011 | MS.gene065780:intergenic | 40.0% |
| ! | TTTTGGTGAAGTTCAAGGAC+TGG | - | 33246:7027-7046 | MS.gene065780:intron | 40.0% |
| !! | CAGAATTCATCGTTGATTCC+TGG | + | 33246:7208-7227 | MS.gene065780:intergenic | 40.0% |
| !! | GACCCCACAAAATTTTGATC+AGG | + | 33246:7076-7095 | MS.gene065780:intergenic | 40.0% |
| !! | GTGATATCAGCTGTTTTGGA+TGG | - | 33246:7124-7143 | MS.gene065780:intron | 40.0% |
| !! | TATTTCTGGGCAGTCATGTA+TGG | - | 33246:6865-6884 | MS.gene065780:intron | 40.0% |
| !!! | TCACAAGCAGGGTTTTAGAA+AGG | - | 33246:6151-6170 | MS.gene065780:CDS | 40.0% |
| AATGAACAGTTCTGCAAGGG+TGG | - | 33246:6724-6743 | MS.gene065780:intron | 45.0% | |
| ACACAATCAGTCAACACAGC+AGG | + | 33246:6953-6972 | MS.gene065780:intergenic | 45.0% | |
| ACCCCATGAAACGATCGATT+CGG | + | 33246:5327-5346 | MS.gene065780:intergenic | 45.0% | |
| ACCGAATCGATCGTTTCATG+GGG | - | 33246:5323-5342 | MS.gene065780:CDS | 45.0% | |
| AGCAAAGGCCATGAATAGTC+CGG | - | 33246:6505-6524 | MS.gene065780:intron | 45.0% | |
| AGTTCATCCACCCAAGTTTC+TGG | - | 33246:6818-6837 | MS.gene065780:intron | 45.0% | |
| ATATTCATCGGTACACCGAG+CGG | + | 33246:5770-5789 | MS.gene065780:intergenic | 45.0% | |
| CAACCGAATCGATCGTTTCA+TGG | - | 33246:5321-5340 | MS.gene065780:CDS | 45.0% | |
| CAGCCTCATTAATAGAAGGC+TGG | + | 33246:6676-6695 | MS.gene065780:intergenic | 45.0% | |
| CATTCCTTCCACGAAACTCT+TGG | + | 33246:5822-5841 | MS.gene065780:intergenic | 45.0% | |
| CGTCCATCAAGAGGATTATG+TGG | + | 33246:6641-6660 | MS.gene065780:intergenic | 45.0% | |
| GAAAATTGAGCCATGAAGCC+CGG | + | 33246:6527-6546 | MS.gene065780:intergenic | 45.0% | |
| GACTATTCATGGCCTTTGCT+AGG | + | 33246:6505-6524 | MS.gene065780:intergenic | 45.0% | |
| GATGATGTCGTTCCTAGCAA+AGG | - | 33246:6490-6509 | MS.gene065780:CDS | 45.0% | |
| GATGTGTTTGGAGAAATCGG+TGG | + | 33246:5381-5400 | MS.gene065780:intergenic | 45.0% | |
| GGACCATCTTACTCAACAGA+TGG | - | 33246:7372-7391 | MS.gene065780:CDS | 45.0% | |
| GGAGACACAGACGAAGTTAA+AGG | - | 33246:7259-7278 | MS.gene065780:CDS | 45.0% | |
| GGTGGAATTGAAAACGACGA+AGG | + | 33246:5363-5382 | MS.gene065780:intergenic | 45.0% | |
| GTGTGGAAGTGGGTAAGTTT+GGG | - | 33246:6321-6340 | MS.gene065780:CDS | 45.0% | |
| GTTCAATTGTCTGACGAAGC+TGG | + | 33246:5435-5454 | MS.gene065780:intergenic | 45.0% | |
| TGCAAACTGCAAAAAGTGGC+TGG | + | 33246:5852-5871 | MS.gene065780:intergenic | 45.0% | |
| TGCATCAAGGTTCTTGATGG+AGG | + | 33246:6753-6772 | MS.gene065780:intergenic | 45.0% | |
| TGTGTGGAAGTGGGTAAGTT+TGG | - | 33246:6320-6339 | MS.gene065780:CDS | 45.0% | |
| TGTTACACCAGAAACTTGGG+TGG | + | 33246:6828-6847 | MS.gene065780:intergenic | 45.0% | |
| TTACCGCTGGTAAAAAGAGG+CGG | - | 33246:6576-6595 | MS.gene065780:intron | 45.0% | |
| ! | CTGAGGTTCCACCTATTTCT+GGG | - | 33246:6852-6871 | MS.gene065780:intron | 45.0% |
| ! | TAGGTTTTGCTTAGGAACGG+TGG | + | 33246:5281-5300 | MS.gene065780:intergenic | 45.0% |
| ! | TCTGAGGTTCCACCTATTTC+TGG | - | 33246:6851-6870 | MS.gene065780:intron | 45.0% |
| !! | ATCGTTGATTCCTGGAAGCT+TGG | + | 33246:7200-7219 | MS.gene065780:intergenic | 45.0% |
| AACTATCTTCATCCTGCCCC+TGG | + | 33246:6604-6623 | MS.gene065780:intergenic | 50.0% | |
| ACTTCCACACATGACCCAAC+AGG | + | 33246:6311-6330 | MS.gene065780:intergenic | 50.0% | |
| AGATACTTGTCCTGGTGCTC+TGG | - | 33246:6003-6022 | MS.gene065780:CDS | 50.0% | |
| CATGAAGCCCGGACTATTCA+TGG | + | 33246:6516-6535 | MS.gene065780:intergenic | 50.0% | |
| CATGAATAGTCCGGGCTTCA+TGG | - | 33246:6514-6533 | MS.gene065780:intron | 50.0% | |
| CATGACTGCCCAGAAATAGG+TGG | + | 33246:6863-6882 | MS.gene065780:intergenic | 50.0% | |
| CGTCTGTGTCTCCAGTAAGT+GGG | + | 33246:7252-7271 | MS.gene065780:intergenic | 50.0% | |
| CTTCATGAGCGAATTCCCAG+CGG | + | 33246:6187-6206 | MS.gene065780:intergenic | 50.0% | |
| GCAAAGGCCATGAATAGTCC+GGG | - | 33246:6506-6525 | MS.gene065780:intron | 50.0% | |
| GTTGGGTCATGTGTGGAAGT+GGG | - | 33246:6311-6330 | MS.gene065780:CDS | 50.0% | |
| TCGTCTGTGTCTCCAGTAAG+TGG | + | 33246:7253-7272 | MS.gene065780:intergenic | 50.0% | |
| TGTTGGGTCATGTGTGGAAG+TGG | - | 33246:6310-6329 | MS.gene065780:CDS | 50.0% | |
| TTTAGGCCAAGCCCACTTAC+TGG | - | 33246:7238-7257 | MS.gene065780:CDS | 50.0% | |
| TTTGGATGGGACACGGTCTT+TGG | - | 33246:7138-7157 | MS.gene065780:intron | 50.0% | |
| ! | AAATTCAGCACCAGAGCACC+AGG | + | 33246:6016-6035 | MS.gene065780:intergenic | 50.0% |
| !! | CAGCTGTTTTGGATGGGACA+CGG | - | 33246:7131-7150 | MS.gene065780:intron | 50.0% |
| ATGAGCGAATTCCCAGCGGT+CGG | + | 33246:6183-6202 | MS.gene065780:intergenic | 55.0% | |
| CCACACATGACCCAACAGGT+GGG | + | 33246:6307-6326 | MS.gene065780:intergenic | 55.0% | |
| CGCTGGGAATTCGCTCATGA+AGG | - | 33246:6185-6204 | MS.gene065780:CDS | 55.0% | |
| GGTAAAAAGAGGCGGCTCCA+GGG | - | 33246:6584-6603 | MS.gene065780:intron | 55.0% | |
| GTAAAAAGAGGCGGCTCCAG+GGG | - | 33246:6585-6604 | MS.gene065780:intron | 55.0% | |
| TCCACACATGACCCAACAGG+TGG | + | 33246:6308-6327 | MS.gene065780:intergenic | 55.0% | |
| TGGGCAACGTGTGCAAGTGA+TGG | - | 33246:6451-6470 | MS.gene065780:CDS | 55.0% | |
| TGGTAAAAAGAGGCGGCTCC+AGG | - | 33246:6583-6602 | MS.gene065780:intron | 55.0% | |
| ! | GAGCCGCCTCTTTTTACCAG+CGG | + | 33246:6582-6601 | MS.gene065780:intergenic | 55.0% |
| ! | GTGTCTCCAGTAAGTGGGCT+TGG | + | 33246:7247-7266 | MS.gene065780:intergenic | 55.0% |
| AAAGGTTGACCCCGACCGCT+GGG | - | 33246:6169-6188 | MS.gene065780:CDS | 60.0% | |
| AAGCCGCAGAACCCACCTGT+TGG | - | 33246:6293-6312 | MS.gene065780:CDS | 60.0% | |
| AGCCGCAGAACCCACCTGTT+GGG | - | 33246:6294-6313 | MS.gene065780:CDS | 60.0% | |
| CCCACCTGTTGGGTCATGTG+TGG | - | 33246:6304-6323 | MS.gene065780:CDS | 60.0% | |
| GGTGATTGGAGAGGGAGCTG+TGG | - | 33246:5641-5660 | MS.gene065780:CDS | 60.0% | |
| TGAGCGAATTCCCAGCGGTC+GGG | + | 33246:6182-6201 | MS.gene065780:intergenic | 60.0% | |
| ! | GACCCAACAGGTGGGTTCTG+CGG | + | 33246:6299-6318 | MS.gene065780:intergenic | 60.0% |
| CGGTACACCGAGCGGAAGCA+TGG | + | 33246:5762-5781 | MS.gene065780:intergenic | 65.0% | |
| GAAAGGTTGACCCCGACCGC+TGG | - | 33246:6168-6187 | MS.gene065780:CDS | 65.0% | |
| GAGCGAATTCCCAGCGGTCG+GGG | + | 33246:6181-6200 | MS.gene065780:intergenic | 65.0% | |
| ! | GGTGCTGCCATGCTTCCGCT+CGG | - | 33246:5752-5771 | MS.gene065780:CDS | 65.0% |
| AAAGAGGCGGCTCCAGGGGC+AGG | - | 33246:6589-6608 | MS.gene065780:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 33246 | gene | 5248 | 7429 | 5248 | ID=MS.gene065780 |
| 33246 | mRNA | 5248 | 7429 | 5248 | ID=MS.gene065780.t1;Parent=MS.gene065780 |
| 33246 | exon | 7217 | 7429 | 7217 | ID=MS.gene065780.t1.exon1;Parent=MS.gene065780.t1 |
| 33246 | CDS | 7217 | 7429 | 7217 | ID=cds.MS.gene065780.t1;Parent=MS.gene065780.t1 |
| 33246 | exon | 5248 | 6516 | 5248 | ID=MS.gene065780.t1.exon2;Parent=MS.gene065780.t1 |
| 33246 | CDS | 5248 | 6516 | 5248 | ID=cds.MS.gene065780.t1;Parent=MS.gene065780.t1 |
| Gene Sequence |
| Protein sequence |
