Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065915.t1 | XP_003607453.1 | 100 | 203 | 0 | 0 | 14 | 216 | 14 | 216 | 7.40E-114 | 419.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065915.t1 | G7JSU3 | 100.0 | 203 | 0 | 0 | 14 | 216 | 14 | 216 | 5.3e-114 | 419.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene065915.t1 | TF | PLATZ |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065915.t1 | MTR_4g078170 | 100.000 | 216 | 0 | 0 | 1 | 216 | 1 | 216 | 6.72e-164 | 451 |
| MS.gene065915.t1 | MTR_5g030130 | 72.381 | 210 | 56 | 1 | 3 | 210 | 23 | 232 | 7.94e-115 | 327 |
| MS.gene065915.t1 | MTR_5g007230 | 73.516 | 219 | 45 | 4 | 1 | 213 | 1 | 212 | 2.35e-113 | 323 |
| MS.gene065915.t1 | MTR_8g066820 | 69.159 | 214 | 62 | 2 | 3 | 213 | 21 | 233 | 3.82e-107 | 308 |
| MS.gene065915.t1 | MTR_5g030130 | 77.465 | 142 | 32 | 0 | 1 | 142 | 21 | 162 | 1.97e-85 | 251 |
| MS.gene065915.t1 | MTR_7g102790 | 54.726 | 201 | 81 | 5 | 15 | 209 | 7 | 203 | 1.66e-70 | 214 |
| MS.gene065915.t1 | MTR_1g062160 | 53.465 | 202 | 81 | 4 | 15 | 209 | 7 | 202 | 4.01e-70 | 213 |
| MS.gene065915.t1 | MTR_2g060540 | 50.370 | 135 | 57 | 4 | 16 | 140 | 11 | 145 | 4.16e-40 | 134 |
| MS.gene065915.t1 | MTR_2g060500 | 48.889 | 135 | 59 | 3 | 16 | 140 | 11 | 145 | 1.17e-39 | 133 |
| MS.gene065915.t1 | MTR_4g116300 | 31.837 | 245 | 115 | 4 | 15 | 208 | 6 | 249 | 6.97e-38 | 132 |
| MS.gene065915.t1 | MTR_2g055210 | 32.922 | 243 | 115 | 5 | 12 | 208 | 99 | 339 | 8.85e-38 | 134 |
| MS.gene065915.t1 | MTR_2g084495 | 35.683 | 227 | 110 | 6 | 16 | 208 | 5 | 229 | 9.12e-38 | 131 |
| MS.gene065915.t1 | MTR_2g084525 | 48.936 | 141 | 62 | 4 | 16 | 146 | 5 | 145 | 4.49e-36 | 127 |
| MS.gene065915.t1 | MTR_2g084510 | 34.167 | 240 | 109 | 7 | 16 | 208 | 4 | 241 | 2.91e-35 | 125 |
| MS.gene065915.t1 | MTR_4g094680 | 36.486 | 222 | 112 | 6 | 12 | 208 | 19 | 236 | 5.21e-35 | 124 |
| MS.gene065915.t1 | MTR_2g036170 | 32.751 | 229 | 107 | 7 | 15 | 209 | 37 | 252 | 1.38e-30 | 113 |
| MS.gene065915.t1 | MTR_8g105930 | 33.951 | 162 | 82 | 6 | 1 | 141 | 1 | 158 | 1.89e-17 | 78.6 |
| MS.gene065915.t1 | MTR_8g097310 | 29.560 | 159 | 99 | 4 | 54 | 208 | 4 | 153 | 8.28e-17 | 74.7 |
| MS.gene065915.t1 | MTR_5g077740 | 27.000 | 200 | 104 | 8 | 15 | 208 | 23 | 186 | 3.83e-16 | 73.9 |
| MS.gene065915.t1 | MTR_1g032880 | 37.778 | 90 | 45 | 3 | 60 | 142 | 26 | 111 | 1.87e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065915.t1 | AT4G17900 | 68.868 | 212 | 55 | 4 | 3 | 209 | 22 | 227 | 3.25e-101 | 292 |
| MS.gene065915.t1 | AT1G32700 | 67.907 | 215 | 62 | 4 | 6 | 216 | 2 | 213 | 9.27e-97 | 281 |
| MS.gene065915.t1 | AT4G17900 | 69.000 | 200 | 57 | 3 | 12 | 209 | 17 | 213 | 1.93e-96 | 280 |
| MS.gene065915.t1 | AT1G21000 | 51.046 | 239 | 76 | 5 | 9 | 208 | 7 | 243 | 1.68e-76 | 230 |
| MS.gene065915.t1 | AT1G21000 | 51.046 | 239 | 76 | 5 | 9 | 208 | 10 | 246 | 2.09e-76 | 230 |
| MS.gene065915.t1 | AT1G32700 | 67.797 | 177 | 51 | 3 | 43 | 216 | 1 | 174 | 1.32e-75 | 226 |
| MS.gene065915.t1 | AT1G76590 | 46.964 | 247 | 90 | 4 | 1 | 208 | 1 | 245 | 7.77e-72 | 219 |
| MS.gene065915.t1 | AT5G46710 | 52.404 | 208 | 87 | 5 | 9 | 208 | 22 | 225 | 7.88e-70 | 213 |
| MS.gene065915.t1 | AT5G46710 | 52.404 | 208 | 87 | 5 | 9 | 208 | 6 | 209 | 7.97e-70 | 212 |
| MS.gene065915.t1 | AT1G43000 | 51.442 | 208 | 87 | 3 | 15 | 208 | 16 | 223 | 4.56e-68 | 208 |
| MS.gene065915.t1 | AT1G43000 | 51.442 | 208 | 87 | 3 | 15 | 208 | 9 | 216 | 6.10e-68 | 207 |
| MS.gene065915.t1 | AT5G46710 | 61.940 | 134 | 50 | 1 | 9 | 141 | 22 | 155 | 1.73e-60 | 187 |
| MS.gene065915.t1 | AT2G27930 | 45.631 | 206 | 82 | 5 | 15 | 210 | 4 | 189 | 2.23e-51 | 164 |
| MS.gene065915.t1 | AT2G27930 | 45.631 | 206 | 82 | 5 | 15 | 210 | 4 | 189 | 2.23e-51 | 164 |
| MS.gene065915.t1 | AT2G27930 | 46.988 | 166 | 78 | 2 | 15 | 170 | 4 | 169 | 9.30e-47 | 152 |
| MS.gene065915.t1 | AT2G27930 | 46.988 | 166 | 78 | 2 | 15 | 170 | 4 | 169 | 9.30e-47 | 152 |
| MS.gene065915.t1 | AT2G12646 | 48.148 | 135 | 69 | 1 | 15 | 149 | 6 | 139 | 2.63e-39 | 136 |
| MS.gene065915.t1 | AT2G12646 | 48.148 | 135 | 69 | 1 | 15 | 149 | 6 | 139 | 2.63e-39 | 136 |
| MS.gene065915.t1 | AT2G12646 | 48.148 | 135 | 69 | 1 | 15 | 149 | 3 | 136 | 2.77e-39 | 135 |
| MS.gene065915.t1 | AT3G60670 | 46.970 | 132 | 69 | 1 | 10 | 141 | 2 | 132 | 4.83e-37 | 130 |
| MS.gene065915.t1 | AT1G31040 | 37.611 | 226 | 107 | 7 | 15 | 208 | 19 | 242 | 1.05e-36 | 129 |
| MS.gene065915.t1 | AT2G27930 | 46.053 | 152 | 53 | 4 | 68 | 210 | 61 | 192 | 4.88e-32 | 115 |
| MS.gene065915.t1 | AT2G27930 | 46.053 | 152 | 53 | 4 | 68 | 210 | 61 | 192 | 4.88e-32 | 115 |
| MS.gene065915.t1 | AT2G01818 | 35.071 | 211 | 116 | 8 | 17 | 208 | 13 | 221 | 2.04e-25 | 99.4 |
| MS.gene065915.t1 | AT2G01818 | 46.250 | 80 | 37 | 3 | 74 | 147 | 9 | 88 | 4.60e-13 | 65.1 |
Find 53 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGAGATACAGAAATTTC+TGG | 0.238023 | 4.1:-27207271 | MS.gene065915:CDS |
| TTTATTCTTCCTCAACTTCT+TGG | 0.252653 | 4.1:+27206593 | None:intergenic |
| TCCTTCAGCTTCTGCTCTCT+TGG | 0.285072 | 4.1:-27207120 | MS.gene065915:CDS |
| CTTCTGCTCTCTTGGTTGTA+AGG | 0.335637 | 4.1:-27207112 | MS.gene065915:intron |
| CAAACAACATAGAACAATTC+AGG | 0.377021 | 4.1:-27207693 | MS.gene065915:intron |
| TGGAATTAGGGAGGTGGAGG+AGG | 0.387306 | 4.1:-27207881 | MS.gene065915:intron |
| CTCAACCTAGGCCTGGAAAA+GGG | 0.405265 | 4.1:-27207185 | MS.gene065915:CDS |
| AAGAAACTTGTTTGAAGAAG+TGG | 0.413060 | 4.1:+27207818 | None:intergenic |
| CTTTGCACTGTTTATAACAT+AGG | 0.413289 | 4.1:+27207230 | None:intergenic |
| TTCATACCATGATGTGATAA+GGG | 0.415618 | 4.1:-27207295 | MS.gene065915:CDS |
| CTTCATACCATGATGTGATA+AGG | 0.416229 | 4.1:-27207296 | MS.gene065915:CDS |
| AGCAAGACAAACAGAACAAA+GGG | 0.420807 | 4.1:+27207721 | None:intergenic |
| CCTCAACCTAGGCCTGGAAA+AGG | 0.425716 | 4.1:-27207186 | MS.gene065915:CDS |
| GCTGTTGGAGGTGGTGTTGA+AGG | 0.439304 | 4.1:+27206480 | None:intergenic |
| ATTCTTCCTCAACTTCTTGG+AGG | 0.449130 | 4.1:+27206596 | None:intergenic |
| GAAAGGCCTCAACCTAGGCC+TGG | 0.497293 | 4.1:-27207192 | MS.gene065915:CDS |
| TAACTCACTGCTGTTGGAGG+TGG | 0.507231 | 4.1:+27206471 | None:intergenic |
| CTGTAACTCACTGCTGTTGG+AGG | 0.521807 | 4.1:+27206468 | None:intergenic |
| AAATGTTGAGTCAGAAAGAC+GGG | 0.526940 | 4.1:-27206572 | MS.gene065915:CDS |
| TCAATGAATGGCATTAGTAA+TGG | 0.528017 | 4.1:-27206534 | MS.gene065915:CDS |
| GAAGGCTACGGTCACAGACT+TGG | 0.533320 | 4.1:+27207148 | None:intergenic |
| AGAACAGTTAAGAGGAGGAA+AGG | 0.533678 | 4.1:-27206447 | MS.gene065915:CDS |
| ATCAATGTTGATAGATAAGG+AGG | 0.535527 | 4.1:-27207320 | MS.gene065915:intron |
| ATTCCACATAGAGCTCCAAT+GGG | 0.539365 | 4.1:-27206423 | MS.gene065915:CDS |
| TGAATGCAATATGTATTGCT+TGG | 0.542264 | 4.1:-27207759 | MS.gene065915:CDS |
| AATTCCACATAGAGCTCCAA+TGG | 0.542578 | 4.1:-27206424 | MS.gene065915:CDS |
| CAGAAACCCTTATCACATCA+TGG | 0.550564 | 4.1:+27207289 | None:intergenic |
| GCTACGGTCACAGACTTGGC+AGG | 0.558501 | 4.1:+27207152 | None:intergenic |
| AATGGCATTAGTAATGGAAG+TGG | 0.564357 | 4.1:-27206528 | MS.gene065915:CDS |
| TCAACCTAGGCCTGGAAAAG+GGG | 0.568882 | 4.1:-27207184 | MS.gene065915:CDS |
| TGAGTTACAGAACAGTTAAG+AGG | 0.568904 | 4.1:-27206455 | MS.gene065915:CDS |
| TGAATGAAAGGCCTCAACCT+AGG | 0.570401 | 4.1:-27207197 | MS.gene065915:CDS |
| TTGGAACCTCCAAGAAGTTG+AGG | 0.571156 | 4.1:-27206602 | MS.gene065915:CDS |
| AGTCAGAAAGACGGGTCTGA+TGG | 0.574132 | 4.1:-27206564 | MS.gene065915:CDS |
| GTCACAGACTTGGCAGGTGT+TGG | 0.575139 | 4.1:+27207158 | None:intergenic |
| TGAAGAAGTGGTTGCAACCA+TGG | 0.585315 | 4.1:+27207830 | None:intergenic |
| AGAAGCTGAAGGAATCAAGA+AGG | 0.586801 | 4.1:+27207130 | None:intergenic |
| GTTCTGTAACTCACTGCTGT+TGG | 0.597323 | 4.1:+27206465 | None:intergenic |
| AAGAAAACAAGTGGCCACCA+TGG | 0.602626 | 4.1:-27207847 | MS.gene065915:CDS |
| TGAAGGAATCAAGAAGGCTA+CGG | 0.603890 | 4.1:+27207136 | None:intergenic |
| AAGCAAGACAAACAGAACAA+AGG | 0.605554 | 4.1:+27207720 | None:intergenic |
| TATTGCTTGGATTGTAACAA+TGG | 0.606739 | 4.1:-27207746 | MS.gene065915:CDS |
| AAAATGTTGAGTCAGAAAGA+CGG | 0.611575 | 4.1:-27206573 | MS.gene065915:CDS |
| GATGGTGAAGAGTCAATGAA+TGG | 0.621483 | 4.1:-27206546 | MS.gene065915:CDS |
| GAAATTTCTGGACATAGCAG+AGG | 0.630359 | 4.1:-27207259 | MS.gene065915:CDS |
| ACCAAGAGAGCAGAAGCTGA+AGG | 0.631097 | 4.1:+27207119 | None:intergenic |
| CACTCTTGTGTGAATCTGAG+TGG | 0.634730 | 4.1:+27207780 | None:intergenic |
| ACAATGAAGAAGAAAACAAG+TGG | 0.648499 | 4.1:-27207856 | MS.gene065915:CDS |
| TCCACATAGAGCTCCAATGG+GGG | 0.650434 | 4.1:-27206421 | MS.gene065915:CDS |
| GTTACAGAACAGTTAAGAGG+AGG | 0.658849 | 4.1:-27206452 | MS.gene065915:CDS |
| CCACATAGAGCTCCAATGGG+GGG | 0.658994 | 4.1:-27206420 | MS.gene065915:CDS |
| TTCCACATAGAGCTCCAATG+GGG | 0.732872 | 4.1:-27206422 | MS.gene065915:CDS |
| AGAAGTGGTTGCAACCATGG+TGG | 0.773987 | 4.1:+27207833 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATATAATAATCAAATTT+AGG | + | chr4.1:27207555-27207574 | None:intergenic | 10.0% |
| !!! | AAAAATCAAATTTTTTCAAT+TGG | + | chr4.1:27206468-27206487 | None:intergenic | 10.0% |
| !!! | AAAATCAAATTTTTTCAATT+GGG | + | chr4.1:27206467-27206486 | None:intergenic | 10.0% |
| !!! | ATTTTTTTTTTTTTGGAATT+AGG | - | chr4.1:27206482-27206501 | MS.gene065915:CDS | 10.0% |
| !!! | TTTTTTTTTTTTTGGAATTA+GGG | - | chr4.1:27206483-27206502 | MS.gene065915:CDS | 10.0% |
| !! | ATTACAAAAAAAACATCAAA+AGG | + | chr4.1:27206425-27206444 | None:intergenic | 15.0% |
| !! | TTACAAAAAAAACATCAAAA+GGG | + | chr4.1:27206424-27206443 | None:intergenic | 15.0% |
| !!! | TTTTGCTAAAATAAATAATG+TGG | - | chr4.1:27206994-27207013 | MS.gene065915:intron | 15.0% |
| !! | ATAACAAGCAATTATTCAAA+TGG | + | chr4.1:27206889-27206908 | None:intergenic | 20.0% |
| !! | TAATTATTGAATTGGTCAAA+GGG | + | chr4.1:27206855-27206874 | None:intergenic | 20.0% |
| !! | TATAAAGTATGCAAACATTA+AGG | - | chr4.1:27207648-27207667 | MS.gene065915:intron | 20.0% |
| !! | TTAATTATTGAATTGGTCAA+AGG | + | chr4.1:27206856-27206875 | None:intergenic | 20.0% |
| !!! | AAAGTGTTAAAATGGTTAAA+TGG | - | chr4.1:27207470-27207489 | MS.gene065915:intron | 20.0% |
| !!! | ACTGATTTGAAACAAAAAAT+TGG | + | chr4.1:27206711-27206730 | None:intergenic | 20.0% |
| !!! | ATTTTTTCTTGTTAGATTGT+TGG | - | chr4.1:27207755-27207774 | MS.gene065915:CDS | 20.0% |
| !!! | CATTTTTCTTACTTTTTCAA+AGG | + | chr4.1:27207690-27207709 | None:intergenic | 20.0% |
| !!! | TATCAAATTTTCACAGAATT+GGG | + | chr4.1:27206771-27206790 | None:intergenic | 20.0% |
| !!! | TCTATTGTAAAGTGTTAAAA+TGG | - | chr4.1:27207462-27207481 | MS.gene065915:intron | 20.0% |
| !!! | TTATCAAATTTTCACAGAAT+TGG | + | chr4.1:27206772-27206791 | None:intergenic | 20.0% |
| !!! | TTTATCAATGTTGATAGATA+AGG | - | chr4.1:27207053-27207072 | MS.gene065915:intron | 20.0% |
| ! | ACTTTATACAGAAAAGAAGT+AGG | + | chr4.1:27207636-27207655 | None:intergenic | 25.0% |
| ! | CAGTTAGATGTATATGAAAT+TGG | + | chr4.1:27207317-27207336 | None:intergenic | 25.0% |
| ! | CGTTAAGTCAAAATAATCAA+GGG | + | chr4.1:27207348-27207367 | None:intergenic | 25.0% |
| ! | TCAAATCAGTTAATTGTGTT+TGG | - | chr4.1:27206721-27206740 | MS.gene065915:intron | 25.0% |
| !!! | AGATTGTGTTTTTGAATGAA+AGG | - | chr4.1:27207167-27207186 | MS.gene065915:CDS | 25.0% |
| !!! | ATTATTTTGACTTAACGCTA+TGG | - | chr4.1:27207351-27207370 | MS.gene065915:intron | 25.0% |
| !!! | TTTTTTTTTTGGAATTAGGG+AGG | - | chr4.1:27206486-27206505 | MS.gene065915:CDS | 25.0% |
| AAAATGTTGAGTCAGAAAGA+CGG | - | chr4.1:27207803-27207822 | MS.gene065915:CDS | 30.0% | |
| ACAATGAAGAAGAAAACAAG+TGG | - | chr4.1:27206520-27206539 | MS.gene065915:CDS | 30.0% | |
| CAAACAACATAGAACAATTC+AGG | - | chr4.1:27206683-27206702 | MS.gene065915:intron | 30.0% | |
| CTTTGCACTGTTTATAACAT+AGG | + | chr4.1:27207149-27207168 | None:intergenic | 30.0% | |
| GCGTTAAGTCAAAATAATCA+AGG | + | chr4.1:27207349-27207368 | None:intergenic | 30.0% | |
| TATTGCTTGGATTGTAACAA+TGG | - | chr4.1:27206630-27206649 | MS.gene065915:intron | 30.0% | |
| TCAATGAATGGCATTAGTAA+TGG | - | chr4.1:27207842-27207861 | MS.gene065915:CDS | 30.0% | |
| TCAGTTAATTGTGTTTGGTT+TGG | - | chr4.1:27206726-27206745 | MS.gene065915:intron | 30.0% | |
| TGAATGCAATATGTATTGCT+TGG | - | chr4.1:27206617-27206636 | MS.gene065915:intron | 30.0% | |
| TTATACAGAAAAGAAGTAGG+AGG | + | chr4.1:27207633-27207652 | None:intergenic | 30.0% | |
| TTCATACCATGATGTGATAA+GGG | - | chr4.1:27207081-27207100 | MS.gene065915:intron | 30.0% | |
| TTTATTCTTCCTCAACTTCT+TGG | + | chr4.1:27207786-27207805 | None:intergenic | 30.0% | |
| ! | AAGAAACTTGTTTGAAGAAG+TGG | + | chr4.1:27206561-27206580 | None:intergenic | 30.0% |
| ! | AGAAAAATGATGATGAGAGT+AGG | - | chr4.1:27207701-27207720 | MS.gene065915:CDS | 30.0% |
| ! | ATCAATGTTGATAGATAAGG+AGG | - | chr4.1:27207056-27207075 | MS.gene065915:intron | 30.0% |
| !! | TTCTGAGATACAGAAATTTC+TGG | - | chr4.1:27207105-27207124 | MS.gene065915:intron | 30.0% |
| AAATGTTGAGTCAGAAAGAC+GGG | - | chr4.1:27207804-27207823 | MS.gene065915:CDS | 35.0% | |
| AAGCAAGACAAACAGAACAA+AGG | + | chr4.1:27206659-27206678 | None:intergenic | 35.0% | |
| AGCAAGACAAACAGAACAAA+GGG | + | chr4.1:27206658-27206677 | None:intergenic | 35.0% | |
| CAATAGAAAACTTTCCACAC+AGG | + | chr4.1:27207449-27207468 | None:intergenic | 35.0% | |
| CTTCATACCATGATGTGATA+AGG | - | chr4.1:27207080-27207099 | MS.gene065915:intron | 35.0% | |
| GTGATCCAAAAATGCAGTTT+GGG | + | chr4.1:27207500-27207519 | None:intergenic | 35.0% | |
| TGAGTTACAGAACAGTTAAG+AGG | - | chr4.1:27207921-27207940 | MS.gene065915:intron | 35.0% | |
| TGATCCAAAAATGCAGTTTG+GGG | + | chr4.1:27207499-27207518 | None:intergenic | 35.0% | |
| TGTGATCCAAAAATGCAGTT+TGG | + | chr4.1:27207501-27207520 | None:intergenic | 35.0% | |
| ! | AAAATGATGATGAGAGTAGG+TGG | - | chr4.1:27207704-27207723 | MS.gene065915:CDS | 35.0% |
| ! | AATGGCATTAGTAATGGAAG+TGG | - | chr4.1:27207848-27207867 | MS.gene065915:CDS | 35.0% |
| ! | TGTTGATTGTTCTGCTTTGA+TGG | - | chr4.1:27206932-27206951 | MS.gene065915:intron | 35.0% |
| !!! | TTTTGACTTAACGCTATGGT+TGG | - | chr4.1:27207355-27207374 | MS.gene065915:intron | 35.0% |
| !!! | TTTTTTTGGAATTAGGGAGG+TGG | - | chr4.1:27206489-27206508 | MS.gene065915:CDS | 35.0% |
| AATTCCACATAGAGCTCCAA+TGG | - | chr4.1:27207952-27207971 | MS.gene065915:intron | 40.0% | |
| AGAACAGTTAAGAGGAGGAA+AGG | - | chr4.1:27207929-27207948 | MS.gene065915:intron | 40.0% | |
| AGAAGCTGAAGGAATCAAGA+AGG | + | chr4.1:27207249-27207268 | None:intergenic | 40.0% | |
| ATTCCACATAGAGCTCCAAT+GGG | - | chr4.1:27207953-27207972 | MS.gene065915:intron | 40.0% | |
| ATTCTTCCTCAACTTCTTGG+AGG | + | chr4.1:27207783-27207802 | None:intergenic | 40.0% | |
| CAGAAACCCTTATCACATCA+TGG | + | chr4.1:27207090-27207109 | None:intergenic | 40.0% | |
| GATCCAAAAATGCAGTTTGG+GGG | + | chr4.1:27207498-27207517 | None:intergenic | 40.0% | |
| GATGGTGAAGAGTCAATGAA+TGG | - | chr4.1:27207830-27207849 | MS.gene065915:CDS | 40.0% | |
| GATTGTTCTGCTTTGATGGA+TGG | - | chr4.1:27206936-27206955 | MS.gene065915:intron | 40.0% | |
| GTTACAGAACAGTTAAGAGG+AGG | - | chr4.1:27207924-27207943 | MS.gene065915:intron | 40.0% | |
| TCAGTCGGGTAAGTAAAGTT+TGG | - | chr4.1:27207389-27207408 | MS.gene065915:intron | 40.0% | |
| TGAAGGAATCAAGAAGGCTA+CGG | + | chr4.1:27207243-27207262 | None:intergenic | 40.0% | |
| ! | GAAATTTCTGGACATAGCAG+AGG | - | chr4.1:27207117-27207136 | MS.gene065915:CDS | 40.0% |
| ! | TTGGTAATCTGGAGTTCAGT+CGG | - | chr4.1:27207374-27207393 | MS.gene065915:intron | 40.0% |
| !! | TAACGCTATGGTTGGTAATC+TGG | - | chr4.1:27207363-27207382 | MS.gene065915:intron | 40.0% |
| AAGAAAACAAGTGGCCACCA+TGG | - | chr4.1:27206529-27206548 | MS.gene065915:CDS | 45.0% | |
| ATAATGATTCCTCCCCCCAT+TGG | + | chr4.1:27207971-27207990 | None:intergenic | 45.0% | |
| CACTCTTGTGTGAATCTGAG+TGG | + | chr4.1:27206599-27206618 | None:intergenic | 45.0% | |
| CTTCTGCTCTCTTGGTTGTA+AGG | - | chr4.1:27207264-27207283 | MS.gene065915:CDS | 45.0% | |
| GTTCTGTAACTCACTGCTGT+TGG | + | chr4.1:27207914-27207933 | None:intergenic | 45.0% | |
| TAGAAGCTGATTGACCTGTG+TGG | - | chr4.1:27207432-27207451 | MS.gene065915:intron | 45.0% | |
| TGAAGAAGTGGTTGCAACCA+TGG | + | chr4.1:27206549-27206568 | None:intergenic | 45.0% | |
| TGAATGAAAGGCCTCAACCT+AGG | - | chr4.1:27207179-27207198 | MS.gene065915:CDS | 45.0% | |
| TTCCACATAGAGCTCCAATG+GGG | - | chr4.1:27207954-27207973 | MS.gene065915:intron | 45.0% | |
| TTGGAACCTCCAAGAAGTTG+AGG | - | chr4.1:27207774-27207793 | MS.gene065915:CDS | 45.0% | |
| ! | GATCCCCCAAACTGCATTTT+TGG | - | chr4.1:27207492-27207511 | MS.gene065915:intron | 45.0% |
| ! | GTTCTGCTTTGATGGATGGA+TGG | - | chr4.1:27206940-27206959 | MS.gene065915:intron | 45.0% |
| ! | TGGTAATCTGGAGTTCAGTC+GGG | - | chr4.1:27207375-27207394 | MS.gene065915:intron | 45.0% |
| !!! | TTTTGGAATTAGGGAGGTGG+AGG | - | chr4.1:27206492-27206511 | MS.gene065915:CDS | 45.0% |
| !!! | AAATTTGATTTTTTTTTTTT+TGG | - | chr4.1:27206475-27206494 | MS.gene065915:CDS | 5.0% |
| !!! | ATTTGATAATAAAATAATTT+TGG | - | chr4.1:27206783-27206802 | MS.gene065915:intron | 5.0% |
| !!! | ATTTTTTTTAATTATTGAAT+TGG | + | chr4.1:27206863-27206882 | None:intergenic | 5.0% |
| !!! | GATAATTTTTATTTAAATTA+TGG | - | chr4.1:27206962-27206981 | MS.gene065915:intron | 5.0% |
| ACCAAGAGAGCAGAAGCTGA+AGG | + | chr4.1:27207260-27207279 | None:intergenic | 50.0% | |
| AGAAGTGGTTGCAACCATGG+TGG | + | chr4.1:27206546-27206565 | None:intergenic | 50.0% | |
| AGTCAGAAAGACGGGTCTGA+TGG | - | chr4.1:27207812-27207831 | MS.gene065915:CDS | 50.0% | |
| CTCAACCTAGGCCTGGAAAA+GGG | - | chr4.1:27207191-27207210 | MS.gene065915:CDS | 50.0% | |
| CTGTAACTCACTGCTGTTGG+AGG | + | chr4.1:27207911-27207930 | None:intergenic | 50.0% | |
| TAACTCACTGCTGTTGGAGG+TGG | + | chr4.1:27207908-27207927 | None:intergenic | 50.0% | |
| TCAACCTAGGCCTGGAAAAG+GGG | - | chr4.1:27207192-27207211 | MS.gene065915:CDS | 50.0% | |
| TCCACATAGAGCTCCAATGG+GGG | - | chr4.1:27207955-27207974 | MS.gene065915:intron | 50.0% | |
| TCCTTCAGCTTCTGCTCTCT+TGG | - | chr4.1:27207256-27207275 | MS.gene065915:CDS | 50.0% | |
| CCACATAGAGCTCCAATGGG+GGG | - | chr4.1:27207956-27207975 | MS.gene065915:intron | 55.0% | |
| CCTCAACCTAGGCCTGGAAA+AGG | - | chr4.1:27207190-27207209 | MS.gene065915:CDS | 55.0% | |
| GAAGGCTACGGTCACAGACT+TGG | + | chr4.1:27207231-27207250 | None:intergenic | 55.0% | |
| GTCACAGACTTGGCAGGTGT+TGG | + | chr4.1:27207221-27207240 | None:intergenic | 55.0% | |
| TGGAATTAGGGAGGTGGAGG+AGG | - | chr4.1:27206495-27206514 | MS.gene065915:CDS | 55.0% | |
| ! | CCTTTTCCAGGCCTAGGTTG+AGG | + | chr4.1:27207193-27207212 | None:intergenic | 55.0% |
| ! | GCTGTTGGAGGTGGTGTTGA+AGG | + | chr4.1:27207899-27207918 | None:intergenic | 55.0% |
| !!! | GTGTTGGTGACCCCTTTTCC+AGG | + | chr4.1:27207205-27207224 | None:intergenic | 55.0% |
| CATAGAGCTCCAATGGGGGG+AGG | - | chr4.1:27207959-27207978 | MS.gene065915:intron | 60.0% | |
| CCCCCCATTGGAGCTCTATG+TGG | + | chr4.1:27207959-27207978 | None:intergenic | 60.0% | |
| GAAAGGCCTCAACCTAGGCC+TGG | - | chr4.1:27207184-27207203 | MS.gene065915:CDS | 60.0% | |
| GCTACGGTCACAGACTTGGC+AGG | + | chr4.1:27207227-27207246 | None:intergenic | 60.0% | |
| ! | GTGACCCCTTTTCCAGGCCT+AGG | + | chr4.1:27207199-27207218 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 27206398 | 27208000 | 27206398 | ID=MS.gene065915 |
| chr4.1 | mRNA | 27206398 | 27208000 | 27206398 | ID=MS.gene065915.t1;Parent=MS.gene065915 |
| chr4.1 | exon | 27207998 | 27208000 | 27207998 | ID=MS.gene065915.t1.exon1;Parent=MS.gene065915.t1 |
| chr4.1 | CDS | 27207998 | 27208000 | 27207998 | ID=cds.MS.gene065915.t1;Parent=MS.gene065915.t1 |
| chr4.1 | exon | 27207694 | 27207894 | 27207694 | ID=MS.gene065915.t1.exon2;Parent=MS.gene065915.t1 |
| chr4.1 | CDS | 27207694 | 27207894 | 27207694 | ID=cds.MS.gene065915.t1;Parent=MS.gene065915.t1 |
| chr4.1 | exon | 27207113 | 27207328 | 27207113 | ID=MS.gene065915.t1.exon3;Parent=MS.gene065915.t1 |
| chr4.1 | CDS | 27207113 | 27207328 | 27207113 | ID=cds.MS.gene065915.t1;Parent=MS.gene065915.t1 |
| chr4.1 | exon | 27206398 | 27206628 | 27206398 | ID=MS.gene065915.t1.exon4;Parent=MS.gene065915.t1 |
| chr4.1 | CDS | 27206398 | 27206628 | 27206398 | ID=cds.MS.gene065915.t1;Parent=MS.gene065915.t1 |
| Gene Sequence |
| Protein sequence |
