AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene066048

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene066048.t1 MTR_1g075890 89.348 460 41 2 1 452 43 502 0.0 798
MS.gene066048.t1 MTR_3g464260 76.543 405 57 5 1 404 35 402 0.0 596
MS.gene066048.t1 MTR_3g464280 66.593 452 95 4 7 456 33 430 0.0 552
MS.gene066048.t1 MTR_5g071070 55.351 542 155 12 1 458 45 583 0.0 523
MS.gene066048.t1 MTR_5g071070 54.563 504 142 12 39 458 1 501 4.35e-161 469
MS.gene066048.t1 MTR_5g082830 54.054 444 147 9 2 406 41 466 1.39e-157 462
MS.gene066048.t1 MTR_7g092070 48.620 471 169 11 2 410 58 517 7.23e-137 411
MS.gene066048.t1 MTR_3g070880 45.895 475 152 14 2 453 21 413 2.48e-127 379
MS.gene066048.t1 MTR_3g029590 42.533 529 212 15 3 451 57 573 2.54e-122 374
MS.gene066048.t1 MTR_1g050438 41.280 453 214 10 2 409 26 471 5.48e-103 319
MS.gene066048.t1 MTR_0728s0020 41.280 453 214 10 2 409 42 487 1.08e-102 320
MS.gene066048.t1 MTR_3g435590 47.688 346 164 5 3 332 44 388 1.25e-100 309
MS.gene066048.t1 MTR_3g464270 54.514 288 120 3 180 456 8 295 8.09e-98 298
MS.gene066048.t1 MTR_3g464290 55.255 333 108 7 135 452 54 360 1.33e-93 291
MS.gene066048.t1 MTR_3g435680 44.269 253 111 3 76 303 26 273 1.77e-66 219
MS.gene066048.t1 MTR_8g102100 54.268 164 69 1 177 334 77 240 5.44e-56 191
MS.gene066048.t1 MTR_6g090380 70.093 107 32 0 177 283 99 205 2.38e-54 186
MS.gene066048.t1 MTR_3g103960 54.037 161 62 4 145 302 25 176 2.05e-52 178
MS.gene066048.t1 MTR_2g090605 62.162 111 42 0 181 291 77 187 1.51e-49 174
MS.gene066048.t1 MTR_4g078660 57.944 107 45 0 177 283 56 162 1.92e-46 164
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene066048.t1 AT5G58620 52.665 469 186 12 2 443 25 484 1.16e-157 460
MS.gene066048.t1 AT2G40140 49.786 468 198 10 2 454 44 489 1.81e-145 429
MS.gene066048.t1 AT2G40140 49.786 468 198 10 2 454 44 489 1.81e-145 429
MS.gene066048.t1 AT3G55980 49.142 466 193 10 2 451 41 478 3.35e-143 422
MS.gene066048.t1 AT3G55980 49.041 469 195 10 2 454 108 548 2.36e-142 422
MS.gene066048.t1 AT2G41900 48.430 446 163 8 6 403 63 489 3.62e-132 398
MS.gene066048.t1 AT5G12850 48.107 449 172 13 14 410 64 503 1.56e-129 391
MS.gene066048.t1 AT4G29190 40.351 285 122 10 150 422 49 297 1.03e-57 194
MS.gene066048.t1 AT2G25900 58.915 129 53 0 177 305 86 214 3.55e-53 181
MS.gene066048.t1 AT2G25900 58.915 129 53 0 177 305 86 214 3.55e-53 181
MS.gene066048.t1 AT2G19810 63.115 122 43 1 166 285 61 182 4.10e-53 182
MS.gene066048.t1 AT5G07500 60.331 121 48 0 163 283 34 154 4.38e-53 179
MS.gene066048.t1 AT1G03790 52.258 155 66 3 148 298 53 203 3.82e-50 176
MS.gene066048.t1 AT5G44260 57.812 128 49 2 159 285 42 165 1.87e-47 168

Find 118 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCTTCATTGTGCTGTTTC+TGG 0.119133 1.2:+58523406 MS.gene066048:CDS
GGTGTGTTGTCTTATATTCT+TGG 0.275343 1.2:+58523334 MS.gene066048:CDS
GAACTTGAAAATCGCCTTAC+AGG 0.298409 1.2:+58524318 MS.gene066048:CDS
TATATAGTACAGATGAATTT+AGG 0.309340 1.2:+58523719 MS.gene066048:CDS
GACGATTTCCTTAAGAAAAT+AGG 0.314739 1.2:+58523598 MS.gene066048:CDS
CTTGTTGTTGCTCCACCATT+TGG 0.317761 1.2:-58523624 None:intergenic
CTTATGGTTGCTGCTTTGTT+TGG 0.322501 1.2:+58523304 MS.gene066048:CDS
GAGCACAAACCAGCAACTTT+GGG 0.343665 1.2:+58524437 MS.gene066048:CDS
GTGTCCCTTGCCCCGAGTTT+CGG 0.352020 1.2:+58523863 MS.gene066048:CDS
CAAGGGCTTATTCTCATGAT+TGG 0.357705 1.2:+58523770 MS.gene066048:CDS
TCTCCTTCAAATAGGCTTGC+AGG 0.358629 1.2:+58524348 MS.gene066048:CDS
AAGGATTGCCCCAAAGTTGC+TGG 0.360358 1.2:-58524446 None:intergenic
CTTACCAATTCAAATGTGAT+TGG 0.367908 1.2:+58524474 MS.gene066048:CDS
TGATCCAATCACATTTGAAT+TGG 0.381273 1.2:-58524478 None:intergenic
AGAGCACAAACCAGCAACTT+TGG 0.387067 1.2:+58524436 MS.gene066048:CDS
GAAGGTTGGATCAAAAGAAA+TGG 0.391384 1.2:+58523261 MS.gene066048:CDS
CGACCGTTGCATGCTTCCAC+TGG 0.395037 1.2:+58524039 MS.gene066048:CDS
TGAAGAGAGGACACCTCTTA+TGG 0.399251 1.2:+58523288 MS.gene066048:CDS
TTGTCTTATATTCTTGGAAC+CGG 0.399584 1.2:+58523340 MS.gene066048:CDS
GTCTTGCATCTCCTTCAAAT+AGG 0.399881 1.2:+58524340 MS.gene066048:CDS
CCGCTGATGCAAACGGTAAC+CGG 0.400035 1.2:+58523491 MS.gene066048:CDS
TTTGAATTGGTAAGATCAAA+AGG 0.409476 1.2:-58524465 None:intergenic
CATCTGCATTCATCAAGCTT+TGG 0.411220 1.2:-58524536 None:intergenic
CTAAGAGTATCTTCGGTTCA+AGG 0.415813 1.2:+58523539 MS.gene066048:CDS
TCAAAGTGAAGCCTTGTTCA+AGG 0.431149 1.2:+58523752 MS.gene066048:CDS
TGCAACGGTCGAAGCTCCTC+TGG 0.431203 1.2:-58524027 None:intergenic
TGCTGCTTTGTTTGGAAGCA+AGG 0.432478 1.2:+58523312 MS.gene066048:CDS
GAGTGCCCCTTTGTTCAACC+TGG 0.438001 1.2:+58523796 MS.gene066048:CDS
TTCTCCCCAGGTTGAACAAA+GGG 0.438980 1.2:-58523802 None:intergenic
TATATTCCATTCTTTATGTC+AGG 0.439563 1.2:-58523700 None:intergenic
AACAAAGCAGCAACCATAAG+AGG 0.442942 1.2:-58523301 None:intergenic
ACCGAGCGTGCGGCTCAGAT+AGG 0.449079 1.2:+58523377 MS.gene066048:CDS
AAGGTTGGATCAAAAGAAAT+GGG 0.451915 1.2:+58523262 MS.gene066048:CDS
TCGGTTTCTAAGAGTATCTT+CGG 0.453417 1.2:+58523532 MS.gene066048:CDS
GGAAGGGATCATGCAACAAA+GGG 0.458959 1.2:+58523884 MS.gene066048:CDS
ACTCCTGCAAGCCTATTTGA+AGG 0.462316 1.2:-58524351 None:intergenic
TTATGGTATGGAAGGAAGGT+TGG 0.462581 1.2:+58523247 MS.gene066048:CDS
GCATGATCCCTTCCGAAACT+CGG 0.472085 1.2:-58523875 None:intergenic
CCCTATCTGAGCCGCACGCT+CGG 0.476697 1.2:-58523378 None:intergenic
CATGATCCCTTCCGAAACTC+GGG 0.480869 1.2:-58523874 None:intergenic
GTCAGGTAGGGATGGATCCA+TGG 0.481206 1.2:-58523683 None:intergenic
TCCATTCTTTATGTCAGGTA+GGG 0.481887 1.2:-58523695 None:intergenic
TTCTTTATGTCAGGTAGGGA+TGG 0.483088 1.2:-58523691 None:intergenic
CCCTTCCGAAACTCGGGGCA+AGG 0.484081 1.2:-58523868 None:intergenic
TGCCACATGGTTCCAGCCTT+AGG 0.487354 1.2:-58524198 None:intergenic
CGGCGCCTTGCATTCTCCCC+AGG 0.487495 1.2:-58523814 None:intergenic
CCCTTGCCCCGAGTTTCGGA+AGG 0.487676 1.2:+58523867 MS.gene066048:CDS
TTCACCAAGTGCTTCTTCGA+TGG 0.489966 1.2:+58524095 MS.gene066048:CDS
GAAAATAGGTTTCCAAATGG+TGG 0.491205 1.2:+58523612 MS.gene066048:CDS
GCAGCATCATCGCCTAAGGC+TGG 0.493703 1.2:+58524186 MS.gene066048:CDS
CTTCTCGGCATCTGAAGGGT+AGG 0.494265 1.2:-58524249 None:intergenic
ATCTGCTTCTCGGCATCTGA+AGG 0.497474 1.2:-58524254 None:intergenic
AGCCTTGTTCTGTATTGAGC+AGG 0.498591 1.2:-58523952 None:intergenic
AGGGTTATGGTATGGAAGGA+AGG 0.505824 1.2:+58523243 MS.gene066048:CDS
TCCCTACCTGACATAAAGAA+TGG 0.512480 1.2:+58523694 MS.gene066048:CDS
GCTTTGGCTCCGCTTCGAAA+AGG 0.514824 1.2:-58524520 None:intergenic
AGTGCCCCTTTGTTCAACCT+GGG 0.517209 1.2:+58523797 MS.gene066048:CDS
TAAGAAAATAGGTTTCCAAA+TGG 0.517234 1.2:+58523609 MS.gene066048:CDS
CAAAGTGAAGCCTTGTTCAA+GGG 0.517860 1.2:+58523753 MS.gene066048:CDS
AAGTAGGGTTATGGTATGGA+AGG 0.522426 1.2:+58523239 MS.gene066048:CDS
GTGCAGTGACTTGATTGTCT+CGG 0.522663 1.2:+58523513 MS.gene066048:CDS
ATCTGCAGCATCATCGCCTA+AGG 0.525855 1.2:+58524182 MS.gene066048:CDS
GATCATGATGTTGATGAAGT+AGG 0.526063 1.2:+58523223 MS.gene066048:CDS
GGTGAATTTGAATATGATGT+AGG 0.526620 1.2:-58524078 None:intergenic
ATGTTGATGAAGTAGGGTTA+TGG 0.527912 1.2:+58523230 MS.gene066048:CDS
GTATCTTCGGTTCAAGGAAG+AGG 0.528667 1.2:+58523545 MS.gene066048:CDS
CCGGTTACCGTTTGCATCAG+CGG 0.529093 1.2:-58523491 None:intergenic
GCTGCTTTGTTTGGAAGCAA+GGG 0.529208 1.2:+58523313 MS.gene066048:CDS
ATCATGATGTTGATGAAGTA+GGG 0.530587 1.2:+58523224 MS.gene066048:CDS
TTCAACCTGGGGAGAATGCA+AGG 0.530956 1.2:+58523809 MS.gene066048:CDS
AAGGAGATGCAAGACCTGTA+AGG 0.541933 1.2:-58524332 None:intergenic
CCGAGCGTGCGGCTCAGATA+GGG 0.547437 1.2:+58523378 MS.gene066048:CDS
CGGAAGGGATCATGCAACAA+AGG 0.550435 1.2:+58523883 MS.gene066048:CDS
TTCTCGGCATCTGAAGGGTA+GGG 0.550744 1.2:-58524248 None:intergenic
CACGTGTAATGATATTTCCT+CGG 0.552027 1.2:-58523841 None:intergenic
AATGATATTTCCTCGGATCA+CGG 0.552863 1.2:-58523834 None:intergenic
GTTAGTTCCGCTGATGCAAA+CGG 0.558347 1.2:+58523484 MS.gene066048:CDS
TCGGTTAACATCAACGCGGC+CGG 0.559271 1.2:-58523359 None:intergenic
TTCCATTCTTTATGTCAGGT+AGG 0.576271 1.2:-58523696 None:intergenic
CCTTCCGAAACTCGGGGCAA+GGG 0.578389 1.2:-58523867 None:intergenic
TGAAACTAGATGCACGAGAA+GGG 0.581662 1.2:+58523984 MS.gene066048:CDS
TTAGGCGATGATGCTGCAGA+TGG 0.582325 1.2:-58524180 None:intergenic
GTGCCCCTTTGTTCAACCTG+GGG 0.583668 1.2:+58523798 MS.gene066048:CDS
TGAAGGTAGAGCAGAACCAG+TGG 0.585309 1.2:-58524055 None:intergenic
GTGCTCTGATGCATTGATGT+CGG 0.590144 1.2:-58524420 None:intergenic
ATGAAACTAGATGCACGAGA+AGG 0.590481 1.2:+58523983 MS.gene066048:CDS
TCAGGTAGGGATGGATCCAT+GGG 0.592467 1.2:-58523682 None:intergenic
GAATCCATCGAAGAAGCACT+TGG 0.592531 1.2:-58524099 None:intergenic
ATGCAAGGCGCCGTGATCCG+AGG 0.595327 1.2:+58523824 MS.gene066048:CDS
CCTTGCCCCGAGTTTCGGAA+GGG 0.595695 1.2:+58523868 MS.gene066048:CDS
ATACAGAACAAGGCTTTGCA+AGG 0.598747 1.2:+58523960 MS.gene066048:CDS
GATGAAGTAGGGTTATGGTA+TGG 0.604921 1.2:+58523235 MS.gene066048:CDS
GTGGAGCAACAACAAGATGT+AGG 0.606526 1.2:+58523631 MS.gene066048:CDS
ATTCTCCCCAGGTTGAACAA+AGG 0.606975 1.2:-58523803 None:intergenic
TGAGAAGAAAGATTATCCCA+TGG 0.621054 1.2:+58523666 MS.gene066048:CDS
TCTGCTTCTCGGCATCTGAA+GGG 0.621299 1.2:-58524253 None:intergenic
AAGAAATGGGATATGAAGAG+AGG 0.624986 1.2:+58523275 MS.gene066048:CDS
TGAGAATAAGCCCTTGAACA+AGG 0.627841 1.2:-58523763 None:intergenic
AAGCAAAAGTTTGACAACCT+CGG 0.631058 1.2:-58523446 None:intergenic
ATCCTGCTCAATACAGAACA+AGG 0.635511 1.2:+58523950 MS.gene066048:CDS
GAACCAGTGGAAGCATGCAA+CGG 0.644293 1.2:-58524042 None:intergenic
AGACAATCAAGTCACTGCAC+CGG 0.647436 1.2:-58523510 None:intergenic
CTGAATCTGAGTCTGCCACA+TGG 0.647805 1.2:-58524211 None:intergenic
GTTGATGTTAACCGAGCGTG+CGG 0.649710 1.2:+58523367 MS.gene066048:CDS
GATGCTGCAGATGGAGTCAA+AGG 0.650089 1.2:-58524171 None:intergenic
TTTGAATATGATGTAGGTGA+AGG 0.654129 1.2:-58524072 None:intergenic
GCAGATTGTATCGAAGAAGA+CGG 0.671424 1.2:-58524138 None:intergenic
TCAAGGAAGAGGATACTACA+AGG 0.674650 1.2:+58523556 MS.gene066048:CDS
AGCACAAACCAGCAACTTTG+GGG 0.680243 1.2:+58524438 MS.gene066048:CDS
ACAAGGCAATGTTGATGACG+AGG 0.685237 1.2:+58523573 MS.gene066048:CDS
TCTCCCCAGGTTGAACAAAG+GGG 0.687449 1.2:-58523801 None:intergenic
CGCCTAAGGCTGGAACCATG+TGG 0.696210 1.2:+58524196 MS.gene066048:CDS
ATGATCCCTTCCGAAACTCG+GGG 0.698351 1.2:-58523873 None:intergenic
GCTGCAGATGGAGTCAAAGG+TGG 0.704806 1.2:-58524168 None:intergenic
GAAGGGATCATGCAACAAAG+GGG 0.715610 1.2:+58523885 MS.gene066048:CDS
AGAAACAGCACAATGAAGAG+CGG 0.722067 1.2:-58523404 None:intergenic
GATGCTTGTGAATATGCACA+TGG 0.754358 1.2:+58523907 MS.gene066048:CDS
ACGCTCGGTTAACATCAACG+CGG 0.858999 1.2:-58523363 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATAGTACAGATGAATTT+AGG + chr1.2:58523719-58523738 MS.gene066048:CDS 20.0%
! TAAGAAAATAGGTTTCCAAA+TGG + chr1.2:58523609-58523628 MS.gene066048:CDS 25.0%
! TATATTCCATTCTTTATGTC+AGG - chr1.2:58523703-58523722 None:intergenic 25.0%
! TTTGAATTGGTAAGATCAAA+AGG - chr1.2:58524468-58524487 None:intergenic 25.0%
!! TTTGGAAACCTATTTTCTTA+AGG - chr1.2:58523609-58523628 None:intergenic 25.0%
AAGGTTGGATCAAAAGAAAT+GGG + chr1.2:58523262-58523281 MS.gene066048:CDS 30.0%
CTTACCAATTCAAATGTGAT+TGG + chr1.2:58524474-58524493 MS.gene066048:CDS 30.0%
GACGATTTCCTTAAGAAAAT+AGG + chr1.2:58523598-58523617 MS.gene066048:CDS 30.0%
GGTGAATTTGAATATGATGT+AGG - chr1.2:58524081-58524100 None:intergenic 30.0%
TGATCCAATCACATTTGAAT+TGG - chr1.2:58524481-58524500 None:intergenic 30.0%
TTGTCTTATATTCTTGGAAC+CGG + chr1.2:58523340-58523359 MS.gene066048:CDS 30.0%
TTTGAATATGATGTAGGTGA+AGG - chr1.2:58524075-58524094 None:intergenic 30.0%
! ATCATGATGTTGATGAAGTA+GGG + chr1.2:58523224-58523243 MS.gene066048:CDS 30.0%
!! AAAATGTTTTCAAGGCTAGT+AGG - chr1.2:58524381-58524400 None:intergenic 30.0%
!!! ACTAGCCTTGAAAACATTTT+CGG + chr1.2:58524381-58524400 MS.gene066048:CDS 30.0%
AAGAAATGGGATATGAAGAG+AGG + chr1.2:58523275-58523294 MS.gene066048:CDS 35.0%
AAGCAAAAGTTTGACAACCT+CGG - chr1.2:58523449-58523468 None:intergenic 35.0%
AATGATATTTCCTCGGATCA+CGG - chr1.2:58523837-58523856 None:intergenic 35.0%
CACGTGTAATGATATTTCCT+CGG - chr1.2:58523844-58523863 None:intergenic 35.0%
GAAAATAGGTTTCCAAATGG+TGG + chr1.2:58523612-58523631 MS.gene066048:CDS 35.0%
GAAGGTTGGATCAAAAGAAA+TGG + chr1.2:58523261-58523280 MS.gene066048:CDS 35.0%
GGTGTGTTGTCTTATATTCT+TGG + chr1.2:58523334-58523353 MS.gene066048:CDS 35.0%
TCCATTCTTTATGTCAGGTA+GGG - chr1.2:58523698-58523717 None:intergenic 35.0%
TGAGAAGAAAGATTATCCCA+TGG + chr1.2:58523666-58523685 MS.gene066048:CDS 35.0%
TTCCATTCTTTATGTCAGGT+AGG - chr1.2:58523699-58523718 None:intergenic 35.0%
! ATGACCCGAAAATGTTTTCA+AGG - chr1.2:58524389-58524408 None:intergenic 35.0%
! ATGTTGATGAAGTAGGGTTA+TGG + chr1.2:58523230-58523249 MS.gene066048:CDS 35.0%
! GATCATGATGTTGATGAAGT+AGG + chr1.2:58523223-58523242 MS.gene066048:CDS 35.0%
!! CACATGGTATTTTTGAATGC+TGG + chr1.2:58523923-58523942 MS.gene066048:CDS 35.0%
!! TCGGTTTCTAAGAGTATCTT+CGG + chr1.2:58523532-58523551 MS.gene066048:CDS 35.0%
!!! CTAGCCTTGAAAACATTTTC+GGG + chr1.2:58524382-58524401 MS.gene066048:CDS 35.0%
!!! GCAGTTTTAAATCTGCTTCT+CGG - chr1.2:58524267-58524286 None:intergenic 35.0%
AACAAAGCAGCAACCATAAG+AGG - chr1.2:58523304-58523323 None:intergenic 40.0%
AAGTAGGGTTATGGTATGGA+AGG + chr1.2:58523239-58523258 MS.gene066048:CDS 40.0%
AGAAACAGCACAATGAAGAG+CGG - chr1.2:58523407-58523426 None:intergenic 40.0%
ATACAGAACAAGGCTTTGCA+AGG + chr1.2:58523960-58523979 MS.gene066048:CDS 40.0%
ATCCTGCTCAATACAGAACA+AGG + chr1.2:58523950-58523969 MS.gene066048:CDS 40.0%
ATGAAACTAGATGCACGAGA+AGG + chr1.2:58523983-58524002 MS.gene066048:CDS 40.0%
CAAGGGCTTATTCTCATGAT+TGG + chr1.2:58523770-58523789 MS.gene066048:CDS 40.0%
CATCTGCATTCATCAAGCTT+TGG - chr1.2:58524539-58524558 None:intergenic 40.0%
GAACTTGAAAATCGCCTTAC+AGG + chr1.2:58524318-58524337 MS.gene066048:CDS 40.0%
GATGAAGTAGGGTTATGGTA+TGG + chr1.2:58523235-58523254 MS.gene066048:CDS 40.0%
GATGCTTGTGAATATGCACA+TGG + chr1.2:58523907-58523926 MS.gene066048:CDS 40.0%
GCAGATTGTATCGAAGAAGA+CGG - chr1.2:58524141-58524160 None:intergenic 40.0%
GTCTTGCATCTCCTTCAAAT+AGG + chr1.2:58524340-58524359 MS.gene066048:CDS 40.0%
TCAAGGAAGAGGATACTACA+AGG + chr1.2:58523556-58523575 MS.gene066048:CDS 40.0%
TCCCTACCTGACATAAAGAA+TGG + chr1.2:58523694-58523713 MS.gene066048:CDS 40.0%
TGAAACTAGATGCACGAGAA+GGG + chr1.2:58523984-58524003 MS.gene066048:CDS 40.0%
TGAGAATAAGCCCTTGAACA+AGG - chr1.2:58523766-58523785 None:intergenic 40.0%
TTATGGTATGGAAGGAAGGT+TGG + chr1.2:58523247-58523266 MS.gene066048:CDS 40.0%
TTCTTTATGTCAGGTAGGGA+TGG - chr1.2:58523694-58523713 None:intergenic 40.0%
!! CAAAGTGAAGCCTTGTTCAA+GGG + chr1.2:58523753-58523772 MS.gene066048:CDS 40.0%
!! CTAAGAGTATCTTCGGTTCA+AGG + chr1.2:58523539-58523558 MS.gene066048:CDS 40.0%
!! CTTATGGTTGCTGCTTTGTT+TGG + chr1.2:58523304-58523323 MS.gene066048:CDS 40.0%
!! TCAAAGTGAAGCCTTGTTCA+AGG + chr1.2:58523752-58523771 MS.gene066048:CDS 40.0%
AAGGAGATGCAAGACCTGTA+AGG - chr1.2:58524335-58524354 None:intergenic 45.0%
ACTCCTGCAAGCCTATTTGA+AGG - chr1.2:58524354-58524373 None:intergenic 45.0%
AGACAATCAAGTCACTGCAC+CGG - chr1.2:58523513-58523532 None:intergenic 45.0%
AGAGCACAAACCAGCAACTT+TGG + chr1.2:58524436-58524455 MS.gene066048:CDS 45.0%
AGCACAAACCAGCAACTTTG+GGG + chr1.2:58524438-58524457 MS.gene066048:CDS 45.0%
AGGGTTATGGTATGGAAGGA+AGG + chr1.2:58523243-58523262 MS.gene066048:CDS 45.0%
GAAGGGATCATGCAACAAAG+GGG + chr1.2:58523885-58523904 MS.gene066048:CDS 45.0%
GAGCACAAACCAGCAACTTT+GGG + chr1.2:58524437-58524456 MS.gene066048:CDS 45.0%
GGAAGGGATCATGCAACAAA+GGG + chr1.2:58523884-58523903 MS.gene066048:CDS 45.0%
GTATCTTCGGTTCAAGGAAG+AGG + chr1.2:58523545-58523564 MS.gene066048:CDS 45.0%
GTGCAGTGACTTGATTGTCT+CGG + chr1.2:58523513-58523532 MS.gene066048:CDS 45.0%
GTGGAGCAACAACAAGATGT+AGG + chr1.2:58523631-58523650 MS.gene066048:CDS 45.0%
GTTAGTTCCGCTGATGCAAA+CGG + chr1.2:58523484-58523503 MS.gene066048:CDS 45.0%
TCTCCTTCAAATAGGCTTGC+AGG + chr1.2:58524348-58524367 MS.gene066048:CDS 45.0%
TGAAGAGAGGACACCTCTTA+TGG + chr1.2:58523288-58523307 MS.gene066048:CDS 45.0%
TTCACCAAGTGCTTCTTCGA+TGG + chr1.2:58524095-58524114 MS.gene066048:CDS 45.0%
! ATTCTCCCCAGGTTGAACAA+AGG - chr1.2:58523806-58523825 None:intergenic 45.0%
! GTGCTCTGATGCATTGATGT+CGG - chr1.2:58524423-58524442 None:intergenic 45.0%
! TTCTCCCCAGGTTGAACAAA+GGG - chr1.2:58523805-58523824 None:intergenic 45.0%
!! ACAAGGCAATGTTGATGACG+AGG + chr1.2:58523573-58523592 MS.gene066048:CDS 45.0%
!! AGCCTTGTTCTGTATTGAGC+AGG - chr1.2:58523955-58523974 None:intergenic 45.0%
!! CTTGTTGTTGCTCCACCATT+TGG - chr1.2:58523627-58523646 None:intergenic 45.0%
!! GAATCCATCGAAGAAGCACT+TGG - chr1.2:58524102-58524121 None:intergenic 45.0%
!! GCTCTTCATTGTGCTGTTTC+TGG + chr1.2:58523406-58523425 MS.gene066048:CDS 45.0%
!! GCTGCTTTGTTTGGAAGCAA+GGG + chr1.2:58523313-58523332 MS.gene066048:CDS 45.0%
!! TGCTGCTTTGTTTGGAAGCA+AGG + chr1.2:58523312-58523331 MS.gene066048:CDS 45.0%
!!! GAGTTGATGCCTTTTCGAAG+CGG + chr1.2:58524511-58524530 MS.gene066048:CDS 45.0%
AAGGATTGCCCCAAAGTTGC+TGG - chr1.2:58524449-58524468 None:intergenic 50.0%
ACGCTCGGTTAACATCAACG+CGG - chr1.2:58523366-58523385 None:intergenic 50.0%
AGTGCCCCTTTGTTCAACCT+GGG + chr1.2:58523797-58523816 MS.gene066048:CDS 50.0%
ATCTGCAGCATCATCGCCTA+AGG + chr1.2:58524182-58524201 MS.gene066048:CDS 50.0%
ATCTGCTTCTCGGCATCTGA+AGG - chr1.2:58524257-58524276 None:intergenic 50.0%
ATGATCCCTTCCGAAACTCG+GGG - chr1.2:58523876-58523895 None:intergenic 50.0%
CATGATCCCTTCCGAAACTC+GGG - chr1.2:58523877-58523896 None:intergenic 50.0%
CGGAAGGGATCATGCAACAA+AGG + chr1.2:58523883-58523902 MS.gene066048:CDS 50.0%
CTGAATCTGAGTCTGCCACA+TGG - chr1.2:58524214-58524233 None:intergenic 50.0%
GATGCTGCAGATGGAGTCAA+AGG - chr1.2:58524174-58524193 None:intergenic 50.0%
GCATGATCCCTTCCGAAACT+CGG - chr1.2:58523878-58523897 None:intergenic 50.0%
GTTGATGTTAACCGAGCGTG+CGG + chr1.2:58523367-58523386 MS.gene066048:CDS 50.0%
TCAGGTAGGGATGGATCCAT+GGG - chr1.2:58523685-58523704 None:intergenic 50.0%
TCTGCTTCTCGGCATCTGAA+GGG - chr1.2:58524256-58524275 None:intergenic 50.0%
TGAAGGTAGAGCAGAACCAG+TGG - chr1.2:58524058-58524077 None:intergenic 50.0%
TTAGGCGATGATGCTGCAGA+TGG - chr1.2:58524183-58524202 None:intergenic 50.0%
TTCAACCTGGGGAGAATGCA+AGG + chr1.2:58523809-58523828 MS.gene066048:CDS 50.0%
TTCTCGGCATCTGAAGGGTA+GGG - chr1.2:58524251-58524270 None:intergenic 50.0%
! GAACCAGTGGAAGCATGCAA+CGG - chr1.2:58524045-58524064 None:intergenic 50.0%
! TCTCCCCAGGTTGAACAAAG+GGG - chr1.2:58523804-58523823 None:intergenic 50.0%
!! CTTTTTCGCTCACAAGCCAG+AGG + chr1.2:58524011-58524030 MS.gene066048:CDS 50.0%
!! TTTTTCTGCTGCTTCTGCCG+AGG + chr1.2:58523429-58523448 MS.gene066048:CDS 50.0%
CCGCTGATGCAAACGGTAAC+CGG + chr1.2:58523491-58523510 MS.gene066048:CDS 55.0%
CCGGTTACCGTTTGCATCAG+CGG - chr1.2:58523494-58523513 None:intergenic 55.0%
CTTCTCGGCATCTGAAGGGT+AGG - chr1.2:58524252-58524271 None:intergenic 55.0%
GAGTGCCCCTTTGTTCAACC+TGG + chr1.2:58523796-58523815 MS.gene066048:CDS 55.0%
GCTGCAGATGGAGTCAAAGG+TGG - chr1.2:58524171-58524190 None:intergenic 55.0%
GTCAGGTAGGGATGGATCCA+TGG - chr1.2:58523686-58523705 None:intergenic 55.0%
GTGCCCCTTTGTTCAACCTG+GGG + chr1.2:58523798-58523817 MS.gene066048:CDS 55.0%
TCGGTTAACATCAACGCGGC+CGG - chr1.2:58523362-58523381 None:intergenic 55.0%
TGCCACATGGTTCCAGCCTT+AGG - chr1.2:58524201-58524220 None:intergenic 55.0%
! GCTTTGGCTCCGCTTCGAAA+AGG - chr1.2:58524523-58524542 None:intergenic 55.0%
CCTTCCGAAACTCGGGGCAA+GGG - chr1.2:58523870-58523889 None:intergenic 60.0%
CCTTGCCCCGAGTTTCGGAA+GGG + chr1.2:58523868-58523887 MS.gene066048:CDS 60.0%
CGACCGTTGCATGCTTCCAC+TGG + chr1.2:58524039-58524058 MS.gene066048:CDS 60.0%
CGCCTAAGGCTGGAACCATG+TGG + chr1.2:58524196-58524215 MS.gene066048:CDS 60.0%
GCAGCATCATCGCCTAAGGC+TGG + chr1.2:58524186-58524205 MS.gene066048:CDS 60.0%
GTGTCCCTTGCCCCGAGTTT+CGG + chr1.2:58523863-58523882 MS.gene066048:CDS 60.0%
TGCAACGGTCGAAGCTCCTC+TGG - chr1.2:58524030-58524049 None:intergenic 60.0%
ACCGAGCGTGCGGCTCAGAT+AGG + chr1.2:58523377-58523396 MS.gene066048:CDS 65.0%
CCCTATCTGAGCCGCACGCT+CGG - chr1.2:58523381-58523400 None:intergenic 65.0%
CCCTTCCGAAACTCGGGGCA+AGG - chr1.2:58523871-58523890 None:intergenic 65.0%
CCCTTGCCCCGAGTTTCGGA+AGG + chr1.2:58523867-58523886 MS.gene066048:CDS 65.0%
CCGAGCGTGCGGCTCAGATA+GGG + chr1.2:58523378-58523397 MS.gene066048:CDS 65.0%
!! ATGCAAGGCGCCGTGATCCG+AGG + chr1.2:58523824-58523843 MS.gene066048:CDS 65.0%
CGGCGCCTTGCATTCTCCCC+AGG - chr1.2:58523817-58523836 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 58523193 58524593 58523193 ID=MS.gene066048
chr1.2 mRNA 58523193 58524593 58523193 ID=MS.gene066048.t1;Parent=MS.gene066048
chr1.2 exon 58523193 58524593 58523193 ID=MS.gene066048.t1.exon1;Parent=MS.gene066048.t1
chr1.2 CDS 58523193 58524593 58523193 ID=cds.MS.gene066048.t1;Parent=MS.gene066048.t1
Gene Sequence

>MS.gene066048

ATGGCGTTCACAAATGCTGTTGAAAAAGATGATCATGATGTTGATGAAGTAGGGTTATGGTATGGAAGGAAGGTTGGATCAAAAGAAATGGGATATGAAGAGAGGACACCTCTTATGGTTGCTGCTTTGTTTGGAAGCAAGGGTGTGTTGTCTTATATTCTTGGAACCGGCCGCGTTGATGTTAACCGAGCGTGCGGCTCAGATAGGGCTACCGCTCTTCATTGTGCTGTTTCTGGTTTTTCTGCTGCTTCTGCCGAGGTTGTCAAACTTTTGCTTGATGCATCTGCAGATGTTAGTTCCGCTGATGCAAACGGTAACCGGTGCAGTGACTTGATTGTCTCGGTTTCTAAGAGTATCTTCGGTTCAAGGAAGAGGATACTACAAGGCAATGTTGATGACGAGGACGACGATTTCCTTAAGAAAATAGGTTTCCAAATGGTGGAGCAACAACAAGATGTAGGTACATCTCGAACTGAGAAGAAAGATTATCCCATGGATCCATCCCTACCTGACATAAAGAATGGAATATATAGTACAGATGAATTTAGGATGTTTACATTCAAAGTGAAGCCTTGTTCAAGGGCTTATTCTCATGATTGGACTGAGTGCCCCTTTGTTCAACCTGGGGAGAATGCAAGGCGCCGTGATCCGAGGAAATATCATTACACGTGTGTCCCTTGCCCCGAGTTTCGGAAGGGATCATGCAACAAAGGGGATGCTTGTGAATATGCACATGGTATTTTTGAATGCTGGCTTCATCCTGCTCAATACAGAACAAGGCTTTGCAAGGATGAAACTAGATGCACGAGAAGGGTTTGCTTTTTCGCTCACAAGCCAGAGGAGCTTCGACCGTTGCATGCTTCCACTGGTTCTGCTCTACCTTCACCTACATCATATTCAAATTCACCAAGTGCTTCTTCGATGGATTCTTTCACATTGAGCTCTCCGTCTTCTTCGATACAATCTGCGTCGACACCACCTTTGACTCCATCTGCAGCATCATCGCCTAAGGCTGGAACCATGTGGCAGACTCAGATTCAGCTTAATGCTGCAGTCCCTACCCTTCAGATGCCGAGAAGCAGATTTAAAACTGCAATGAATGCTAGAAATAATGCTGAATTTCTCGAACTTGAAAATCGCCTTACAGGTCTTGCATCTCCTTCAAATAGGCTTGCAGGAGTGAATCCTACTAGCCTTGAAAACATTTTCGGGTCATCAATACAATCTCCGACATCAATGCATCAGAGCACAAACCAGCAACTTTGGGGCAATCCTTTTGATCTTACCAATTCAAATGTGATTGGATCAACACAATTTAGAGTTGATGCCTTTTCGAAGCGGAGCCAAAGCTTGATGAATGCAGATGCTAATAATGAAAAATTTGATGAATGCAGATGCTAA
Protein sequence

>MS.gene066048.t1

MAFTNAVEKDDHDVDEVGLWYGRKVGSKEMGYEERTPLMVAALFGSKGVLSYILGTGRVDVNRACGSDRATALHCAVSGFSAASAEVVKLLLDASADVSSADANGNRCSDLIVSVSKSIFGSRKRILQGNVDDEDDDFLKKIGFQMVEQQQDVGTSRTEKKDYPMDPSLPDIKNGIYSTDEFRMFTFKVKPCSRAYSHDWTECPFVQPGENARRRDPRKYHYTCVPCPEFRKGSCNKGDACEYAHGIFECWLHPAQYRTRLCKDETRCTRRVCFFAHKPEELRPLHASTGSALPSPTSYSNSPSASSMDSFTLSSPSSSIQSASTPPLTPSAASSPKAGTMWQTQIQLNAAVPTLQMPRSRFKTAMNARNNAEFLELENRLTGLASPSNRLAGVNPTSLENIFGSSIQSPTSMHQSTNQQLWGNPFDLTNSNVIGSTQFRVDAFSKRSQSLMNADANNEKFDECRC