Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066253.t1 | XP_024632961.1 | 79.2 | 800 | 104 | 6 | 1 | 738 | 1 | 800 | 0.00E+00 | 1243 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066253.t1 | Q9SZL8 | 25.0 | 636 | 373 | 12 | 32 | 631 | 70 | 637 | 9.1e-54 | 213.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066253.t1 | D3YBB9 | 71.3 | 774 | 168 | 6 | 1 | 730 | 49 | 812 | 0.0e+00 | 1091.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene066253.t1 | TF | FAR1 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066253.t1 | MTR_0558s0020 | 73.986 | 296 | 42 | 3 | 1 | 261 | 1 | 296 | 7.28e-151 | 442 |
MS.gene066253.t1 | MTR_1g083640 | 69.366 | 284 | 37 | 3 | 1 | 234 | 1 | 284 | 5.20e-132 | 393 |
MS.gene066253.t1 | MTR_8g446020 | 60.339 | 295 | 44 | 3 | 1 | 261 | 1 | 256 | 1.46e-111 | 339 |
MS.gene066253.t1 | MTR_0337s0060 | 58.228 | 316 | 32 | 4 | 413 | 725 | 21 | 239 | 3.11e-107 | 328 |
MS.gene066253.t1 | MTR_2g014100 | 65.714 | 245 | 41 | 3 | 1 | 202 | 1 | 245 | 1.34e-102 | 316 |
MS.gene066253.t1 | MTR_6g090505 | 66.667 | 237 | 45 | 2 | 65 | 267 | 1 | 237 | 5.18e-101 | 316 |
MS.gene066253.t1 | MTR_6g090505 | 79.592 | 49 | 10 | 0 | 533 | 581 | 314 | 362 | 3.67e-12 | 69.3 |
MS.gene066253.t1 | MTR_3g028680 | 81.646 | 158 | 26 | 1 | 584 | 738 | 1 | 158 | 4.02e-84 | 265 |
MS.gene066253.t1 | MTR_0337s0040 | 56.705 | 261 | 39 | 4 | 1 | 226 | 1 | 222 | 5.84e-84 | 266 |
MS.gene066253.t1 | MTR_3g008240 | 79.375 | 160 | 32 | 1 | 1 | 159 | 1 | 160 | 7.04e-83 | 263 |
MS.gene066253.t1 | MTR_5g071590 | 72.619 | 168 | 33 | 2 | 1 | 155 | 1 | 168 | 1.34e-80 | 256 |
MS.gene066253.t1 | MTR_4g040430 | 78.065 | 155 | 30 | 1 | 1 | 155 | 1 | 151 | 4.87e-79 | 252 |
MS.gene066253.t1 | MTR_2g067090 | 78.065 | 155 | 31 | 1 | 587 | 738 | 99 | 253 | 1.14e-74 | 244 |
MS.gene066253.t1 | MTR_4g133495 | 63.187 | 182 | 41 | 2 | 542 | 720 | 88 | 246 | 1.08e-66 | 222 |
MS.gene066253.t1 | MTR_4g133340 | 63.187 | 182 | 41 | 2 | 542 | 720 | 88 | 246 | 1.08e-66 | 222 |
MS.gene066253.t1 | MTR_1281s0010 | 79.817 | 109 | 22 | 0 | 19 | 127 | 1 | 109 | 5.42e-56 | 187 |
MS.gene066253.t1 | MTR_1g055240 | 59.859 | 142 | 23 | 2 | 91 | 198 | 3 | 144 | 3.82e-49 | 170 |
MS.gene066253.t1 | MTR_0019s0290 | 57.237 | 152 | 31 | 2 | 82 | 199 | 9 | 160 | 1.01e-48 | 169 |
MS.gene066253.t1 | MTR_4g008820 | 71.000 | 100 | 28 | 1 | 1 | 99 | 125 | 224 | 2.88e-32 | 134 |
MS.gene066253.t1 | MTR_8g046060 | 78.409 | 88 | 10 | 2 | 1 | 79 | 91 | 178 | 6.33e-32 | 124 |
MS.gene066253.t1 | MTR_6g051425 | 27.987 | 318 | 164 | 7 | 40 | 307 | 22 | 324 | 6.16e-27 | 113 |
MS.gene066253.t1 | MTR_2g067130 | 58.511 | 94 | 33 | 2 | 661 | 751 | 46 | 136 | 4.12e-23 | 96.7 |
MS.gene066253.t1 | MTR_0337s0050 | 72.222 | 36 | 10 | 0 | 225 | 260 | 14 | 49 | 2.39e-12 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066253.t1 | AT4G38180 | 25.472 | 636 | 370 | 13 | 32 | 631 | 70 | 637 | 1.20e-57 | 211 |
MS.gene066253.t1 | AT4G15090 | 26.134 | 551 | 340 | 10 | 161 | 707 | 191 | 678 | 2.65e-56 | 207 |
MS.gene066253.t1 | AT4G15090 | 26.134 | 551 | 340 | 10 | 161 | 707 | 191 | 678 | 2.65e-56 | 207 |
MS.gene066253.t1 | AT4G15090 | 26.134 | 551 | 340 | 10 | 161 | 707 | 191 | 678 | 2.65e-56 | 207 |
MS.gene066253.t1 | AT4G15090 | 26.134 | 551 | 340 | 10 | 161 | 707 | 191 | 678 | 2.65e-56 | 207 |
MS.gene066253.t1 | AT4G15090 | 26.134 | 551 | 340 | 10 | 161 | 707 | 191 | 678 | 2.65e-56 | 207 |
MS.gene066253.t1 | AT3G06250 | 25.578 | 606 | 348 | 15 | 34 | 627 | 189 | 703 | 9.66e-53 | 196 |
MS.gene066253.t1 | AT3G06250 | 25.578 | 606 | 348 | 15 | 34 | 627 | 189 | 703 | 9.66e-53 | 196 |
MS.gene066253.t1 | AT3G06250 | 25.578 | 606 | 348 | 15 | 34 | 627 | 189 | 703 | 9.66e-53 | 196 |
MS.gene066253.t1 | AT2G27110 | 26.130 | 509 | 319 | 11 | 179 | 685 | 36 | 489 | 4.90e-49 | 184 |
MS.gene066253.t1 | AT2G27110 | 26.130 | 509 | 319 | 11 | 179 | 685 | 181 | 634 | 1.36e-48 | 185 |
MS.gene066253.t1 | AT2G27110 | 26.130 | 509 | 319 | 11 | 179 | 685 | 181 | 634 | 1.36e-48 | 185 |
MS.gene066253.t1 | AT5G18960 | 24.071 | 619 | 364 | 16 | 24 | 627 | 200 | 727 | 1.84e-45 | 175 |
MS.gene066253.t1 | AT5G18960 | 24.071 | 619 | 364 | 16 | 24 | 627 | 200 | 727 | 1.84e-45 | 175 |
MS.gene066253.t1 | AT3G22170 | 22.426 | 709 | 441 | 17 | 34 | 719 | 69 | 691 | 3.08e-45 | 175 |
MS.gene066253.t1 | AT3G22170 | 22.426 | 709 | 441 | 17 | 34 | 719 | 69 | 691 | 3.08e-45 | 175 |
MS.gene066253.t1 | AT1G76320 | 22.740 | 730 | 441 | 21 | 50 | 740 | 12 | 657 | 6.53e-43 | 166 |
MS.gene066253.t1 | AT1G76320 | 22.740 | 730 | 441 | 21 | 50 | 740 | 12 | 657 | 1.76e-42 | 166 |
MS.gene066253.t1 | AT1G76320 | 22.740 | 730 | 441 | 21 | 50 | 740 | 12 | 657 | 2.07e-42 | 165 |
MS.gene066253.t1 | AT1G76320 | 22.740 | 730 | 441 | 21 | 50 | 740 | 12 | 657 | 2.07e-42 | 165 |
MS.gene066253.t1 | AT4G38170 | 25.058 | 431 | 265 | 11 | 201 | 628 | 24 | 399 | 3.00e-42 | 162 |
MS.gene066253.t1 | AT2G32250 | 23.603 | 716 | 439 | 21 | 1 | 709 | 8 | 622 | 1.31e-39 | 157 |
MS.gene066253.t1 | AT2G32250 | 23.603 | 716 | 439 | 21 | 1 | 709 | 8 | 622 | 2.18e-39 | 157 |
MS.gene066253.t1 | AT2G32250 | 23.603 | 716 | 439 | 21 | 1 | 709 | 8 | 622 | 2.18e-39 | 157 |
MS.gene066253.t1 | AT2G32250 | 23.603 | 716 | 439 | 21 | 1 | 709 | 8 | 622 | 2.18e-39 | 157 |
MS.gene066253.t1 | AT2G32250 | 23.603 | 716 | 439 | 21 | 1 | 709 | 8 | 622 | 2.57e-39 | 156 |
MS.gene066253.t1 | AT2G32250 | 23.603 | 716 | 439 | 21 | 1 | 709 | 8 | 622 | 2.57e-39 | 156 |
MS.gene066253.t1 | AT2G32250 | 23.817 | 676 | 411 | 19 | 41 | 709 | 3 | 581 | 4.61e-39 | 155 |
MS.gene066253.t1 | AT2G32250 | 23.817 | 676 | 411 | 19 | 41 | 709 | 3 | 581 | 4.87e-39 | 155 |
MS.gene066253.t1 | AT1G80010 | 23.381 | 633 | 368 | 18 | 41 | 628 | 101 | 661 | 8.02e-35 | 142 |
MS.gene066253.t1 | AT5G28530 | 23.005 | 639 | 361 | 17 | 40 | 626 | 60 | 619 | 6.92e-33 | 136 |
MS.gene066253.t1 | AT5G28530 | 22.848 | 639 | 358 | 18 | 40 | 626 | 60 | 615 | 3.77e-32 | 134 |
MS.gene066253.t1 | AT5G28530 | 22.848 | 639 | 358 | 18 | 40 | 626 | 60 | 615 | 3.77e-32 | 134 |
MS.gene066253.t1 | AT1G10240 | 25.974 | 462 | 273 | 13 | 171 | 625 | 205 | 604 | 9.31e-32 | 132 |
MS.gene066253.t1 | AT1G10240 | 25.974 | 462 | 273 | 13 | 171 | 625 | 205 | 604 | 9.31e-32 | 132 |
MS.gene066253.t1 | AT1G52520 | 22.311 | 623 | 380 | 20 | 38 | 628 | 88 | 638 | 1.15e-30 | 129 |
MS.gene066253.t1 | AT4G19990 | 25.298 | 419 | 284 | 9 | 41 | 449 | 41 | 440 | 2.01e-27 | 119 |
MS.gene066253.t1 | AT4G19990 | 34.586 | 133 | 73 | 3 | 557 | 687 | 509 | 629 | 1.91e-11 | 68.2 |
MS.gene066253.t1 | AT4G19990 | 25.298 | 419 | 284 | 9 | 41 | 449 | 27 | 426 | 2.10e-27 | 119 |
MS.gene066253.t1 | AT4G19990 | 34.586 | 133 | 73 | 3 | 557 | 687 | 495 | 615 | 1.81e-11 | 68.2 |
MS.gene066253.t1 | AT4G19990 | 25.298 | 419 | 284 | 9 | 41 | 449 | 27 | 426 | 2.10e-27 | 119 |
MS.gene066253.t1 | AT4G19990 | 34.586 | 133 | 73 | 3 | 557 | 687 | 495 | 615 | 1.81e-11 | 68.2 |
MS.gene066253.t1 | AT4G19990 | 25.298 | 419 | 284 | 9 | 41 | 449 | 27 | 426 | 2.14e-27 | 119 |
MS.gene066253.t1 | AT4G19990 | 34.586 | 133 | 73 | 3 | 557 | 687 | 495 | 615 | 1.78e-11 | 68.2 |
MS.gene066253.t1 | AT4G19990 | 25.298 | 419 | 284 | 9 | 41 | 449 | 27 | 426 | 2.46e-27 | 119 |
MS.gene066253.t1 | AT4G19990 | 34.586 | 133 | 73 | 3 | 557 | 687 | 495 | 615 | 1.89e-11 | 68.2 |
MS.gene066253.t1 | AT4G19990 | 25.298 | 419 | 284 | 9 | 41 | 449 | 27 | 426 | 2.46e-27 | 119 |
MS.gene066253.t1 | AT4G19990 | 34.586 | 133 | 73 | 3 | 557 | 687 | 495 | 615 | 1.89e-11 | 68.2 |
MS.gene066253.t1 | AT4G19990 | 27.985 | 268 | 186 | 4 | 185 | 449 | 106 | 369 | 1.72e-25 | 112 |
MS.gene066253.t1 | AT4G19990 | 34.586 | 133 | 73 | 3 | 557 | 687 | 438 | 558 | 1.68e-11 | 68.2 |
Find 116 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 1.1:+71608746 | MS.gene066253:CDS |
AGTCGCTTCTTTGACCTAAT+TGG | 0.186128 | 1.1:-71609881 | None:intergenic |
CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 1.1:+71609013 | MS.gene066253:CDS |
TACATTTCAGCTGCCTTTCT+TGG | 0.197151 | 1.1:+71608465 | MS.gene066253:intron |
CAACAAGATTATGCTCTATT+TGG | 0.198611 | 1.1:+71607951 | MS.gene066253:CDS |
CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 1.1:+71608498 | MS.gene066253:CDS |
TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 1.1:-71608592 | None:intergenic |
TTCTTTGACCTAATTGGATT+TGG | 0.299426 | 1.1:-71609875 | None:intergenic |
AATCAGATTTCGACTACAAT+TGG | 0.318540 | 1.1:+71608787 | MS.gene066253:CDS |
TGTTCTTGAGGCAGGGAAAA+AGG | 0.322946 | 1.1:+71609727 | MS.gene066253:CDS |
ACCAGCCTGGTCTGTGTATA+TGG | 0.341000 | 1.1:-71608610 | None:intergenic |
ACCGATATTTATTGTTTGTT+CGG | 0.341758 | 1.1:-71608001 | None:intergenic |
GAGGGATAATCATGCTGATT+TGG | 0.346844 | 1.1:+71609046 | MS.gene066253:CDS |
GGTTTCGAATGTTGATGTTT+TGG | 0.354913 | 1.1:+71609310 | MS.gene066253:CDS |
GTCTTTAGTGCCAACATTCA+TGG | 0.367086 | 1.1:-71609603 | None:intergenic |
AACAATAAATATCGGTCATT+AGG | 0.381093 | 1.1:+71608008 | MS.gene066253:CDS |
CTCAACGGTGTTCTTGAGGC+AGG | 0.386173 | 1.1:+71609719 | MS.gene066253:CDS |
TCATGCTGATTTGGACTTCA+AGG | 0.389304 | 1.1:+71609055 | MS.gene066253:CDS |
TACACGTGTTTGCGCAGATC+CGG | 0.394831 | 1.1:+71609679 | MS.gene066253:CDS |
TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 1.1:-71607488 | None:intergenic |
AAGAAAGACCAAATCCAATT+AGG | 0.397771 | 1.1:+71609867 | MS.gene066253:CDS |
TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 1.1:-71609857 | None:intergenic |
TTCCTTCAAATACTATTATG+AGG | 0.399583 | 1.1:+71609187 | MS.gene066253:CDS |
GAGAGAAAGTGTTGGATTGC+TGG | 0.400783 | 1.1:-71610767 | None:intergenic |
GAGGAGTTTCTTCTTTCTAA+AGG | 0.401366 | 1.1:+71609752 | MS.gene066253:CDS |
CCATGATTCTTTATCACTAA+AGG | 0.406174 | 1.1:-71607249 | None:intergenic |
TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 1.1:+71607259 | MS.gene066253:CDS |
GATTATGATCTTCAAACCTT+GGG | 0.413114 | 1.1:-71609358 | None:intergenic |
ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 1.1:+71607330 | MS.gene066253:CDS |
GGGTTGTCACAGTCGACATT+AGG | 0.419786 | 1.1:+71609393 | MS.gene066253:CDS |
CGATTATGATCTTCAAACCT+TGG | 0.425681 | 1.1:-71609359 | None:intergenic |
CATGTCGTATGTTTGAGAAC+CGG | 0.431153 | 1.1:+71609435 | MS.gene066253:CDS |
AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 1.1:+71607547 | MS.gene066253:CDS |
TGAATGTCTATAAGATATAT+AGG | 0.445219 | 1.1:+71607579 | MS.gene066253:CDS |
TGGTCTGTGTATATGGTTTG+AGG | 0.447350 | 1.1:-71608603 | None:intergenic |
GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 1.1:+71607530 | MS.gene066253:CDS |
CGCTTTAAAACATATTGTGC+AGG | 0.447633 | 1.1:-71609536 | None:intergenic |
ATGATCTCAAGTAGCGCAAA+TGG | 0.448805 | 1.1:-71607623 | None:intergenic |
CGTTATGCTTGTAACAAAGA+AGG | 0.449439 | 1.1:+71607413 | MS.gene066253:CDS |
TATGCATTGGTCTTCAGCTT+GGG | 0.450920 | 1.1:+71608887 | MS.gene066253:CDS |
ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 1.1:+71607184 | MS.gene066253:CDS |
TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 1.1:+71608677 | MS.gene066253:CDS |
GGCCTACTTCGGACTTTAAG+TGG | 0.458978 | 1.1:+71608841 | MS.gene066253:CDS |
ACCGAACAAACAATAAATAT+CGG | 0.459220 | 1.1:+71608000 | MS.gene066253:CDS |
GCAGAATGCGGTTGAGCAAT+GGG | 0.462349 | 1.1:-71610820 | None:intergenic |
CGCAAACACGTGTAGAAAGC+TGG | 0.465682 | 1.1:-71609670 | None:intergenic |
TTGTCTGTGAACCATCTGTT+GGG | 0.466795 | 1.1:+71609828 | MS.gene066253:CDS |
TGCAGAATGCGGTTGAGCAA+TGG | 0.468601 | 1.1:-71610821 | None:intergenic |
ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 1.1:+71607379 | MS.gene066253:CDS |
GTATGCATTGGTCTTCAGCT+TGG | 0.479582 | 1.1:+71608886 | MS.gene066253:CDS |
TTCATTCAAATCGTATGCAT+TGG | 0.479750 | 1.1:+71608874 | MS.gene066253:CDS |
CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 1.1:-71609189 | None:intergenic |
TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 1.1:-71607524 | None:intergenic |
TTTAATTATGCATATAACAC+TGG | 0.485542 | 1.1:+71607317 | MS.gene066253:CDS |
TCTAATGACAACTCGTCAAA+AGG | 0.488137 | 1.1:+71607791 | MS.gene066253:CDS |
CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 1.1:+71607373 | MS.gene066253:CDS |
TATGAGGAGGACACAACAAA+AGG | 0.490908 | 1.1:+71609203 | MS.gene066253:CDS |
ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 1.1:-71608478 | None:intergenic |
ATCAGATTTCGACTACAATT+GGG | 0.491708 | 1.1:+71608788 | MS.gene066253:CDS |
CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 1.1:+71607804 | MS.gene066253:CDS |
ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 1.1:+71609027 | MS.gene066253:CDS |
GACCGCATAAGCTGACTGTT+GGG | 0.496307 | 1.1:-71609107 | None:intergenic |
ATGTCGTATGTTTGAGAACC+GGG | 0.500346 | 1.1:+71609436 | MS.gene066253:CDS |
AGAAATATTTCAGATGTCTC+CGG | 0.500588 | 1.1:-71609698 | None:intergenic |
ATTGGTCTTCAGCTTGGGTG+AGG | 0.501327 | 1.1:+71608892 | MS.gene066253:CDS |
TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 1.1:-71607896 | None:intergenic |
ATCATAATCGACTTGATGAA+AGG | 0.507955 | 1.1:+71609372 | MS.gene066253:CDS |
TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 1.1:-71607762 | None:intergenic |
GATCTTCAAACCTTGGGGAA+AGG | 0.519004 | 1.1:-71609352 | None:intergenic |
TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 1.1:-71608995 | None:intergenic |
TGTCTATAAGATATATAGGT+GGG | 0.523740 | 1.1:+71607583 | MS.gene066253:CDS |
TCATAATCGACTTGATGAAA+GGG | 0.526860 | 1.1:+71609373 | MS.gene066253:CDS |
GTTGTCTGTGAACCATCTGT+TGG | 0.527141 | 1.1:+71609827 | MS.gene066253:CDS |
AGTACAATCAACTTGTGGTA+TGG | 0.527227 | 1.1:-71610791 | None:intergenic |
CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 1.1:-71609184 | None:intergenic |
CTGAAATCTACCATGAATGT+TGG | 0.534154 | 1.1:+71609593 | MS.gene066253:CDS |
TAACAAAGAAGGTTTCAAGA+AGG | 0.538422 | 1.1:+71607424 | MS.gene066253:CDS |
AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 1.1:-71608990 | None:intergenic |
ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 1.1:+71609204 | MS.gene066253:CDS |
CCTTTAGTGATAAAGAATCA+TGG | 0.543522 | 1.1:+71607249 | MS.gene066253:CDS |
AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 1.1:+71607425 | MS.gene066253:CDS |
CATGTCGACATAAGAAATCC+CGG | 0.553818 | 1.1:-71609454 | None:intergenic |
ACTTCAACAACGCACCAGCC+TGG | 0.557139 | 1.1:-71608623 | None:intergenic |
AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 1.1:+71607858 | MS.gene066253:CDS |
TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 1.1:+71607208 | MS.gene066253:CDS |
GTGATGGGTCAAGGAGTTGG+AGG | 0.568802 | 1.1:+71607726 | MS.gene066253:intron |
ACTTCAAGGCTGCAAACACT+AGG | 0.573822 | 1.1:+71609069 | MS.gene066253:CDS |
GGACCGCATAAGCTGACTGT+TGG | 0.579264 | 1.1:-71609108 | None:intergenic |
TTGAAGAAAACCTTTCCCCA+AGG | 0.580876 | 1.1:+71609342 | MS.gene066253:CDS |
TTTGGTGCAGTCCCAACAGA+TGG | 0.581566 | 1.1:-71609839 | None:intergenic |
TGGTGTATACTTGTTTACTA+CGG | 0.585960 | 1.1:-71609129 | None:intergenic |
TCAACGGTGTTCTTGAGGCA+GGG | 0.590097 | 1.1:+71609720 | MS.gene066253:CDS |
ACCATATACACAGACCAGGC+TGG | 0.590176 | 1.1:+71608609 | MS.gene066253:CDS |
ATTTCTCAACGGTGTTCTTG+AGG | 0.591378 | 1.1:+71609715 | MS.gene066253:CDS |
ACGCACAACGTTGCAGAATG+CGG | 0.596865 | 1.1:-71610832 | None:intergenic |
GACAACTCGTCAAAAGGAGA+TGG | 0.599038 | 1.1:+71607797 | MS.gene066253:CDS |
TTGATATCGTTGTGCTTGAG+TGG | 0.601464 | 1.1:-71609627 | None:intergenic |
AACTCGTCAAAAGGAGATGG+TGG | 0.603142 | 1.1:+71607800 | MS.gene066253:CDS |
ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | 1.1:+71609105 | MS.gene066253:CDS |
CTTCAAATACTATTATGAGG+AGG | 0.607664 | 1.1:+71609190 | MS.gene066253:CDS |
ATATCAACTTCATCTGAGAG+TGG | 0.614980 | 1.1:+71607173 | MS.gene066253:CDS |
AGAACTGGACTGTCACATGT+TGG | 0.620791 | 1.1:-71607473 | None:intergenic |
AGCCACTTAAAGTCCGAAGT+AGG | 0.621799 | 1.1:-71608843 | None:intergenic |
GGGTCAAGGAGTTGGAGGCA+CGG | 0.621882 | 1.1:+71607731 | MS.gene066253:intron |
ATTATGATCTTCAAACCTTG+GGG | 0.630358 | 1.1:-71609357 | None:intergenic |
GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 1.1:+71608678 | MS.gene066253:CDS |
CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 1.1:+71609028 | MS.gene066253:CDS |
ATGTCTATAAGATATATAGG+TGG | 0.643489 | 1.1:+71607582 | MS.gene066253:CDS |
GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 1.1:-71609578 | None:intergenic |
ACATCTGAAATATTTCTCAA+CGG | 0.651799 | 1.1:+71609704 | MS.gene066253:CDS |
TGAATAAATGAAAAGCAAGA+TGG | 0.655697 | 1.1:-71609149 | None:intergenic |
GCAGAAGTACAATCAACTTG+TGG | 0.663516 | 1.1:-71610796 | None:intergenic |
TCAAACCATATACACAGACC+AGG | 0.671057 | 1.1:+71608605 | MS.gene066253:CDS |
ATGTTGATAATGATAATGAG+AGG | 0.683310 | 1.1:+71609288 | MS.gene066253:CDS |
GGTATGGAGAGAGAAAGTGT+TGG | 0.688205 | 1.1:-71610775 | None:intergenic |
TGTTGATAATGATAATGAGA+GGG | 0.689129 | 1.1:+71609289 | MS.gene066253:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTTTAATTTTGTTATGTT+TGG | - | chr1.1:71610654-71610673 | None:intergenic | 10.0% |
!! | AACTATAATATTAGTATGTT+TGG | - | chr1.1:71610542-71610561 | None:intergenic | 15.0% |
!!! | ACGTATTTATGATTTTATTT+TGG | + | chr1.1:71610178-71610197 | MS.gene066253:intron | 15.0% |
!!! | TGTTTTTTATGTTATAAGTT+AGG | + | chr1.1:71610007-71610026 | MS.gene066253:intron | 15.0% |
!! | AAACCAAATTAACAATCTAA+TGG | - | chr1.1:71610211-71610230 | None:intergenic | 20.0% |
!! | AAACCATAATTATGGTTTAA+TGG | - | chr1.1:71610254-71610273 | None:intergenic | 20.0% |
!! | AAACCATTAAACCATAATTA+TGG | + | chr1.1:71610248-71610267 | MS.gene066253:intron | 20.0% |
!! | AAACCATTAGATTGTTAATT+TGG | + | chr1.1:71610205-71610224 | MS.gene066253:intron | 20.0% |
!! | AATTCTTGATTGTTATGTAT+TGG | + | chr1.1:71610105-71610124 | MS.gene066253:intron | 20.0% |
!! | ATTAAAGTCATAATAAAACG+AGG | + | chr1.1:71610488-71610507 | MS.gene066253:intron | 20.0% |
!! | CAATTCACAAAATAAGAAAT+CGG | + | chr1.1:71607373-71607392 | MS.gene066253:CDS | 20.0% |
!! | TCTTAACTAAACCATAATTA+TGG | - | chr1.1:71610262-71610281 | None:intergenic | 20.0% |
!! | TGAATGTCTATAAGATATAT+AGG | + | chr1.1:71607579-71607598 | MS.gene066253:CDS | 20.0% |
!! | TTGGATTTATAATGTTAGTA+TGG | - | chr1.1:71610579-71610598 | None:intergenic | 20.0% |
!! | TTTAATTATGCATATAACAC+TGG | + | chr1.1:71607317-71607336 | MS.gene066253:CDS | 20.0% |
!!! | ATGATGAAAAACTGTTTTAA+TGG | + | chr1.1:71608816-71608835 | MS.gene066253:CDS | 20.0% |
!!! | TGAATGTTTATATTGATTGA+AGG | + | chr1.1:71608155-71608174 | MS.gene066253:intron | 20.0% |
! | AACAATAAATATCGGTCATT+AGG | + | chr1.1:71608008-71608027 | MS.gene066253:CDS | 25.0% |
! | ACAAAATAAGAAATCGGATA+AGG | + | chr1.1:71607379-71607398 | MS.gene066253:CDS | 25.0% |
! | ACCGAACAAACAATAAATAT+CGG | + | chr1.1:71608000-71608019 | MS.gene066253:CDS | 25.0% |
! | ACCGATATTTATTGTTTGTT+CGG | - | chr1.1:71608004-71608023 | None:intergenic | 25.0% |
! | ATGTCTATAAGATATATAGG+TGG | + | chr1.1:71607582-71607601 | MS.gene066253:CDS | 25.0% |
! | CATAATAGTATTTGAAGGAA+AGG | - | chr1.1:71609187-71609206 | None:intergenic | 25.0% |
! | CTTTAGTCATTTCAACATTA+TGG | + | chr1.1:71609013-71609032 | MS.gene066253:CDS | 25.0% |
! | TGAAAATTCAGTTATTGATG+CGG | + | chr1.1:71607208-71607227 | MS.gene066253:CDS | 25.0% |
! | TGAAATTTGAATGAATGTTC+TGG | + | chr1.1:71608073-71608092 | MS.gene066253:intron | 25.0% |
! | TGAATAAATGAAAAGCAAGA+TGG | - | chr1.1:71609152-71609171 | None:intergenic | 25.0% |
! | TGTCTATAAGATATATAGGT+GGG | + | chr1.1:71607583-71607602 | MS.gene066253:CDS | 25.0% |
! | TTAAACAATGTAGGCATTAT+TGG | + | chr1.1:71610516-71610535 | MS.gene066253:intron | 25.0% |
! | TTCCTTCAAATACTATTATG+AGG | + | chr1.1:71609187-71609206 | MS.gene066253:CDS | 25.0% |
! | TTTCGATGAGTTAACTAATT+TGG | + | chr1.1:71608746-71608765 | MS.gene066253:CDS | 25.0% |
! | TTTCTATTTACACAACACAA+TGG | + | chr1.1:71608395-71608414 | MS.gene066253:intron | 25.0% |
!! | ACATCTGAAATATTTCTCAA+CGG | + | chr1.1:71609704-71609723 | MS.gene066253:CDS | 25.0% |
!! | AGGTTTAGAATTTAATGTTC+TGG | + | chr1.1:71608175-71608194 | MS.gene066253:intron | 25.0% |
!! | ATTTTCAAATCTGAGTTAAG+TGG | + | chr1.1:71610281-71610300 | MS.gene066253:intron | 25.0% |
!! | CTATACATTTTCACATTTGT+TGG | + | chr1.1:71610150-71610169 | MS.gene066253:intron | 25.0% |
!! | TCAATTTCGAATGTTTTTCA+AGG | + | chr1.1:71608645-71608664 | MS.gene066253:CDS | 25.0% |
!! | TGTTGTATTTTGTTCTGATT+TGG | + | chr1.1:71608436-71608455 | MS.gene066253:intron | 25.0% |
!! | TTAGTATGGTTTGTAATGTT+TGG | - | chr1.1:71610565-71610584 | None:intergenic | 25.0% |
!! | TTGGTTTGAATATTATCTTC+TGG | + | chr1.1:71610124-71610143 | MS.gene066253:intron | 25.0% |
!!! | AAGACATAGCTAGTATTTTT+TGG | + | chr1.1:71607913-71607932 | MS.gene066253:CDS | 25.0% |
!!! | AGACATAGCTAGTATTTTTT+GGG | + | chr1.1:71607914-71607933 | MS.gene066253:CDS | 25.0% |
!!! | ATGTTGATAATGATAATGAG+AGG | + | chr1.1:71609288-71609307 | MS.gene066253:CDS | 25.0% |
!!! | CTTATTTTGTGAATTGTTCT+TGG | - | chr1.1:71607369-71607388 | None:intergenic | 25.0% |
!!! | GCTTTAATAAATTCTAAAGC+TGG | + | chr1.1:71607678-71607697 | MS.gene066253:intron | 25.0% |
!!! | TGAAAAACTGTTTTAATGGA+AGG | + | chr1.1:71608820-71608839 | MS.gene066253:CDS | 25.0% |
!!! | TGTTGATAATGATAATGAGA+GGG | + | chr1.1:71609289-71609308 | MS.gene066253:CDS | 25.0% |
AAACACATATGATCTTTCCA+TGG | - | chr1.1:71608246-71608265 | None:intergenic | 30.0% | |
AACAAAGAAGGTTTCAAGAA+GGG | + | chr1.1:71607425-71607444 | MS.gene066253:CDS | 30.0% | |
AAGAAAGACCAAATCCAATT+AGG | + | chr1.1:71609867-71609886 | MS.gene066253:CDS | 30.0% | |
AATCAGATTTCGACTACAAT+TGG | + | chr1.1:71608787-71608806 | MS.gene066253:CDS | 30.0% | |
AGAAATATTTCAGATGTCTC+CGG | - | chr1.1:71609701-71609720 | None:intergenic | 30.0% | |
ATAAGTTAGGAAAGATGATG+AGG | + | chr1.1:71610020-71610039 | MS.gene066253:intron | 30.0% | |
ATCAGATTTCGACTACAATT+GGG | + | chr1.1:71608788-71608807 | MS.gene066253:CDS | 30.0% | |
ATGATTGTCAAAACCAAGAA+AGG | - | chr1.1:71608481-71608500 | None:intergenic | 30.0% | |
ATTATGATCTTCAAACCTTG+GGG | - | chr1.1:71609360-71609379 | None:intergenic | 30.0% | |
CAACAAGATTATGCTCTATT+TGG | + | chr1.1:71607951-71607970 | MS.gene066253:CDS | 30.0% | |
CCATGATTCTTTATCACTAA+AGG | - | chr1.1:71607252-71607271 | None:intergenic | 30.0% | |
CCTTTAGTGATAAAGAATCA+TGG | + | chr1.1:71607249-71607268 | MS.gene066253:CDS | 30.0% | |
CTCCTCATAATAGTATTTGA+AGG | - | chr1.1:71609192-71609211 | None:intergenic | 30.0% | |
CTGGTATATGTGTGTTAATT+TGG | + | chr1.1:71608112-71608131 | MS.gene066253:intron | 30.0% | |
CTTCAAATACTATTATGAGG+AGG | + | chr1.1:71609190-71609209 | MS.gene066253:CDS | 30.0% | |
GAGAATGCAAAGAAAAATCT+CGG | + | chr1.1:71608702-71608721 | MS.gene066253:CDS | 30.0% | |
GATTATGATCTTCAAACCTT+GGG | - | chr1.1:71609361-71609380 | None:intergenic | 30.0% | |
GTATGCTTAATCCTAAAAAC+AGG | + | chr1.1:71607450-71607469 | MS.gene066253:CDS | 30.0% | |
TAAAGAAAAACCAGAGGAAA+GGG | + | chr1.1:71607514-71607533 | MS.gene066253:CDS | 30.0% | |
TAAAGAATCATGGAAGTCTT+TGG | + | chr1.1:71607259-71607278 | MS.gene066253:CDS | 30.0% | |
TAAAGAATCGAACAAGTGAA+TGG | - | chr1.1:71608998-71609017 | None:intergenic | 30.0% | |
TAACAAAGAAGGTTTCAAGA+AGG | + | chr1.1:71607424-71607443 | MS.gene066253:CDS | 30.0% | |
TGGATATCATAGTAAAAACC+TGG | - | chr1.1:71607879-71607898 | None:intergenic | 30.0% | |
TGGTGTATACTTGTTTACTA+CGG | - | chr1.1:71609132-71609151 | None:intergenic | 30.0% | |
TTCATTCAAATCGTATGCAT+TGG | + | chr1.1:71608874-71608893 | MS.gene066253:CDS | 30.0% | |
TTCTTTGACCTAATTGGATT+TGG | - | chr1.1:71609878-71609897 | None:intergenic | 30.0% | |
TTTAAGTCCGAAAATCGAAA+AGG | - | chr1.1:71607765-71607784 | None:intergenic | 30.0% | |
! | AGCTGGAATATATTTGAAGT+TGG | + | chr1.1:71607547-71607566 | MS.gene066253:CDS | 30.0% |
! | CAAAGTTTTCACAATTGAGA+AGG | + | chr1.1:71609247-71609266 | MS.gene066253:CDS | 30.0% |
! | GAATCTTCCTTTTCGATTTT+CGG | + | chr1.1:71607755-71607774 | MS.gene066253:CDS | 30.0% |
! | TATGGTTTGAGGTTTCTTAT+TGG | - | chr1.1:71608595-71608614 | None:intergenic | 30.0% |
! | TCTTTCAATGCTTTTCTTCA+TGG | + | chr1.1:71608957-71608976 | MS.gene066253:CDS | 30.0% |
! | TGAGGCTTTAACAATTTAAG+CGG | + | chr1.1:71609976-71609995 | MS.gene066253:intron | 30.0% |
! | TGAGGCTTTAACTAAAAAAG+CGG | + | chr1.1:71610038-71610057 | MS.gene066253:intron | 30.0% |
! | TTTGGTCTTTCTTTGAACTT+TGG | - | chr1.1:71609860-71609879 | None:intergenic | 30.0% |
!! | ACATGTTTTCAAGATTTTGG+AGG | + | chr1.1:71609472-71609491 | MS.gene066253:CDS | 30.0% |
!! | ACTTCTTTTGAAGACTTAGA+AGG | - | chr1.1:71609806-71609825 | None:intergenic | 30.0% |
!! | ATCATAATCGACTTGATGAA+AGG | + | chr1.1:71609372-71609391 | MS.gene066253:CDS | 30.0% |
!! | ATGTTCTGGTTTAGAATTGA+AGG | + | chr1.1:71608087-71608106 | MS.gene066253:intron | 30.0% |
!! | GAGGCATTTTTAAACAATGT+AGG | + | chr1.1:71610507-71610526 | MS.gene066253:intron | 30.0% |
!! | TCATAATCGACTTGATGAAA+GGG | + | chr1.1:71609373-71609392 | MS.gene066253:CDS | 30.0% |
!! | TCGACATGTTTTCAAGATTT+TGG | + | chr1.1:71609469-71609488 | MS.gene066253:CDS | 30.0% |
!!! | CTGCACAATATGTTTTAAAG+CGG | + | chr1.1:71609537-71609556 | MS.gene066253:CDS | 30.0% |
!!! | GTTTTTCAAGGTGTTTTTCA+TGG | + | chr1.1:71608657-71608676 | MS.gene066253:CDS | 30.0% |
ACATTATGGTTCAGAGAATG+AGG | + | chr1.1:71609027-71609046 | MS.gene066253:CDS | 35.0% | |
AGGACATCTTATGAAGTGAT+GGG | + | chr1.1:71607711-71607730 | MS.gene066253:intron | 35.0% | |
AGTACAATCAACTTGTGGTA+TGG | - | chr1.1:71610794-71610813 | None:intergenic | 35.0% | |
ATAACACTGGATTCTCTGTT+AGG | + | chr1.1:71607330-71607349 | MS.gene066253:CDS | 35.0% | |
ATATCAACTTCATCTGAGAG+TGG | + | chr1.1:71607173-71607192 | MS.gene066253:CDS | 35.0% | |
CATTATGGTTCAGAGAATGA+GGG | + | chr1.1:71609028-71609047 | MS.gene066253:CDS | 35.0% | |
CCACATCATGAATGAATTCA+AGG | - | chr1.1:71610434-71610453 | None:intergenic | 35.0% | |
CCTTGAATTCATTCATGATG+TGG | + | chr1.1:71610431-71610450 | MS.gene066253:intron | 35.0% | |
CGAGAAGTAAATGAAGTTCA+AGG | + | chr1.1:71607648-71607667 | MS.gene066253:intron | 35.0% | |
CGATTATGATCTTCAAACCT+TGG | - | chr1.1:71609362-71609381 | None:intergenic | 35.0% | |
CGTTATGCTTGTAACAAAGA+AGG | + | chr1.1:71607413-71607432 | MS.gene066253:CDS | 35.0% | |
CTAAAGAAAAACCAGAGGAA+AGG | + | chr1.1:71607513-71607532 | MS.gene066253:CDS | 35.0% | |
CTGAAATCTACCATGAATGT+TGG | + | chr1.1:71609593-71609612 | MS.gene066253:CDS | 35.0% | |
GAAAGCTAAAGAAAAACCAG+AGG | + | chr1.1:71607508-71607527 | MS.gene066253:CDS | 35.0% | |
GAAGCAAAAGAAAGATGATG+AGG | + | chr1.1:71609958-71609977 | MS.gene066253:intron | 35.0% | |
GAATGAATTCAAGGAATGAG+TGG | - | chr1.1:71610425-71610444 | None:intergenic | 35.0% | |
GACAGAAATTCCTTATAGCT+CGG | + | chr1.1:71609933-71609952 | MS.gene066253:intron | 35.0% | |
GAGGAGTTTCTTCTTTCTAA+AGG | + | chr1.1:71609752-71609771 | MS.gene066253:CDS | 35.0% | |
TCTAATGACAACTCGTCAAA+AGG | + | chr1.1:71607791-71607810 | MS.gene066253:CDS | 35.0% | |
TGTACAGAGCACAAATTCTA+AGG | - | chr1.1:71608222-71608241 | None:intergenic | 35.0% | |
TTCTCATACTCAACAAGAAC+TGG | - | chr1.1:71607491-71607510 | None:intergenic | 35.0% | |
! | CATCGTAAGAGTGTGTTATT+TGG | + | chr1.1:71608498-71608517 | MS.gene066253:CDS | 35.0% |
! | GAGGCTTTAACAATTTAAGC+GGG | + | chr1.1:71609977-71609996 | MS.gene066253:intron | 35.0% |
! | GGTTTCGAATGTTGATGTTT+TGG | + | chr1.1:71609310-71609329 | MS.gene066253:CDS | 35.0% |
! | TGGTTTAGAATTGAAGGTTC+TGG | + | chr1.1:71608093-71608112 | MS.gene066253:intron | 35.0% |
! | TTTTAATGGAAGGCCTACTT+CGG | + | chr1.1:71608830-71608849 | MS.gene066253:CDS | 35.0% |
! | TTTTTCATGGTCTTTGCTCA+TGG | + | chr1.1:71608670-71608689 | MS.gene066253:CDS | 35.0% |
!! | CGCTTTAAAACATATTGTGC+AGG | - | chr1.1:71609539-71609558 | None:intergenic | 35.0% |
!! | TTCAAGATTTTGGAGGTCTT+AGG | + | chr1.1:71609479-71609498 | MS.gene066253:CDS | 35.0% |
!!! | AGACATCAGCTACTTTTGAT+TGG | + | chr1.1:71608541-71608560 | MS.gene066253:CDS | 35.0% |
!!! | CACAATATGTTTTAAAGCGG+TGG | + | chr1.1:71609540-71609559 | MS.gene066253:CDS | 35.0% |
AATCGAACAAGTGAATGGTC+TGG | - | chr1.1:71608993-71609012 | None:intergenic | 40.0% | |
ACCTATGATCTTTGCATAGC+TGG | - | chr1.1:71608344-71608363 | None:intergenic | 40.0% | |
AGTCGCTTCTTTGACCTAAT+TGG | - | chr1.1:71609884-71609903 | None:intergenic | 40.0% | |
ATCTGAGAGTGGACAATTGA+CGG | + | chr1.1:71607184-71607203 | MS.gene066253:CDS | 40.0% | |
ATGAGGAGGACACAACAAAA+GGG | + | chr1.1:71609204-71609223 | MS.gene066253:CDS | 40.0% | |
ATGATCTCAAGTAGCGCAAA+TGG | - | chr1.1:71607626-71607645 | None:intergenic | 40.0% | |
ATGTCGTATGTTTGAGAACC+GGG | + | chr1.1:71609436-71609455 | MS.gene066253:CDS | 40.0% | |
ATTTCTCAACGGTGTTCTTG+AGG | + | chr1.1:71609715-71609734 | MS.gene066253:CDS | 40.0% | |
CATGTCGACATAAGAAATCC+CGG | - | chr1.1:71609457-71609476 | None:intergenic | 40.0% | |
CATGTCGTATGTTTGAGAAC+CGG | + | chr1.1:71609435-71609454 | MS.gene066253:CDS | 40.0% | |
GAGGACATCTTATGAAGTGA+TGG | + | chr1.1:71607710-71607729 | MS.gene066253:intron | 40.0% | |
GATTTCAGCTTATCGACAGA+CGG | - | chr1.1:71609581-71609600 | None:intergenic | 40.0% | |
GGATTGCTGGACAAAAATCA+GGG | - | chr1.1:71610757-71610776 | None:intergenic | 40.0% | |
GTCAATTCTGATGTAATGCG+CGG | + | chr1.1:71610368-71610387 | MS.gene066253:intron | 40.0% | |
GTCTTTAGTGCCAACATTCA+TGG | - | chr1.1:71609606-71609625 | None:intergenic | 40.0% | |
TACATTTCAGCTGCCTTTCT+TGG | + | chr1.1:71608465-71608484 | MS.gene066253:intron | 40.0% | |
TATGAGGAGGACACAACAAA+AGG | + | chr1.1:71609203-71609222 | MS.gene066253:CDS | 40.0% | |
TCAAACCATATACACAGACC+AGG | + | chr1.1:71608605-71608624 | MS.gene066253:CDS | 40.0% | |
TCCAGCTATGCAAAGATCAT+AGG | + | chr1.1:71608340-71608359 | MS.gene066253:intron | 40.0% | |
TGGATTGCTGGACAAAAATC+AGG | - | chr1.1:71610758-71610777 | None:intergenic | 40.0% | |
TGGTCTGTGTATATGGTTTG+AGG | - | chr1.1:71608606-71608625 | None:intergenic | 40.0% | |
TTGAAGAAAACCTTTCCCCA+AGG | + | chr1.1:71609342-71609361 | MS.gene066253:CDS | 40.0% | |
TTGATATCGTTGTGCTTGAG+TGG | - | chr1.1:71609630-71609649 | None:intergenic | 40.0% | |
TTGTCTGTGAACCATCTGTT+GGG | + | chr1.1:71609828-71609847 | MS.gene066253:CDS | 40.0% | |
TTTGCTTCTTCCGAGCTATA+AGG | - | chr1.1:71609946-71609965 | None:intergenic | 40.0% | |
! | ACAAAAATCAGGGCGTTCTA+TGG | - | chr1.1:71610747-71610766 | None:intergenic | 40.0% |
! | GAGGGATAATCATGCTGATT+TGG | + | chr1.1:71609046-71609065 | MS.gene066253:CDS | 40.0% |
! | GCAGAAGTACAATCAACTTG+TGG | - | chr1.1:71610799-71610818 | None:intergenic | 40.0% |
! | GTCACATTTTACAGCTGGTT+TGG | + | chr1.1:71608914-71608933 | MS.gene066253:CDS | 40.0% |
!! | AAGATTTTGGAGGTCTTAGG+TGG | + | chr1.1:71609482-71609501 | MS.gene066253:CDS | 40.0% |
!! | TATGCATTGGTCTTCAGCTT+GGG | + | chr1.1:71608887-71608906 | MS.gene066253:CDS | 40.0% |
!! | TCACATGTTGGCCTGTTTTT+AGG | - | chr1.1:71607464-71607483 | None:intergenic | 40.0% |
!! | TCATGCTGATTTGGACTTCA+AGG | + | chr1.1:71609055-71609074 | MS.gene066253:CDS | 40.0% |
!! | TCTTATGAAGTGATGGGTCA+AGG | + | chr1.1:71607717-71607736 | MS.gene066253:intron | 40.0% |
!!! | GCTAGTATTTTTTGGGCAGA+TGG | + | chr1.1:71607921-71607940 | MS.gene066253:CDS | 40.0% |
AACTCGTCAAAAGGAGATGG+TGG | + | chr1.1:71607800-71607819 | MS.gene066253:CDS | 45.0% | |
AATGAAGCTCTCTCGAAACC+AGG | + | chr1.1:71607858-71607877 | MS.gene066253:CDS | 45.0% | |
ACTTCAAGGCTGCAAACACT+AGG | + | chr1.1:71609069-71609088 | MS.gene066253:CDS | 45.0% | |
AGAACTGGACTGTCACATGT+TGG | - | chr1.1:71607476-71607495 | None:intergenic | 45.0% | |
AGCCACTTAAAGTCCGAAGT+AGG | - | chr1.1:71608846-71608865 | None:intergenic | 45.0% | |
ATCCCAACAGTCAGCTTATG+CGG | + | chr1.1:71609105-71609124 | MS.gene066253:CDS | 45.0% | |
ATTTGTGCTCTGTACAGCCA+TGG | + | chr1.1:71608226-71608245 | MS.gene066253:intron | 45.0% | |
CTAAAGCTGGAATGTCGATG+AGG | + | chr1.1:71607691-71607710 | MS.gene066253:intron | 45.0% | |
GAAAAACCAGAGGAAAGGGT+TGG | + | chr1.1:71607518-71607537 | MS.gene066253:CDS | 45.0% | |
GACAACTCGTCAAAAGGAGA+TGG | + | chr1.1:71607797-71607816 | MS.gene066253:CDS | 45.0% | |
GATCTTCAAACCTTGGGGAA+AGG | - | chr1.1:71609355-71609374 | None:intergenic | 45.0% | |
GTTGTCTGTGAACCATCTGT+TGG | + | chr1.1:71609827-71609846 | MS.gene066253:CDS | 45.0% | |
TGTCTTCTGCAGCATCAACT+TGG | - | chr1.1:71607899-71607918 | None:intergenic | 45.0% | |
TGTTCTTGAGGCAGGGAAAA+AGG | + | chr1.1:71609727-71609746 | MS.gene066253:CDS | 45.0% | |
TTACAACCAACCCTTTCCTC+TGG | - | chr1.1:71607527-71607546 | None:intergenic | 45.0% | |
! | GGTATGGAGAGAGAAAGTGT+TGG | - | chr1.1:71610778-71610797 | None:intergenic | 45.0% |
! | GTGAGGTCACATTTTACAGC+TGG | + | chr1.1:71608909-71608928 | MS.gene066253:CDS | 45.0% |
!! | CAGAGCACAAATTCTAAGGC+AGG | - | chr1.1:71608218-71608237 | None:intergenic | 45.0% |
!! | GAAAGGGTTGGTTGTAAAGC+TGG | + | chr1.1:71607530-71607549 | MS.gene066253:CDS | 45.0% |
!! | GAGAGAAAGTGTTGGATTGC+TGG | - | chr1.1:71610770-71610789 | None:intergenic | 45.0% |
!! | GTATGCATTGGTCTTCAGCT+TGG | + | chr1.1:71608886-71608905 | MS.gene066253:CDS | 45.0% |
ACCAGCCTGGTCTGTGTATA+TGG | - | chr1.1:71608613-71608632 | None:intergenic | 50.0% | |
ACCATATACACAGACCAGGC+TGG | + | chr1.1:71608609-71608628 | MS.gene066253:CDS | 50.0% | |
ACGCACAACGTTGCAGAATG+CGG | - | chr1.1:71610835-71610854 | None:intergenic | 50.0% | |
CGCAAACACGTGTAGAAAGC+TGG | - | chr1.1:71609673-71609692 | None:intergenic | 50.0% | |
GACCGCATAAGCTGACTGTT+GGG | - | chr1.1:71609110-71609129 | None:intergenic | 50.0% | |
GCAGAATGCGGTTGAGCAAT+GGG | - | chr1.1:71610823-71610842 | None:intergenic | 50.0% | |
GGCCTACTTCGGACTTTAAG+TGG | + | chr1.1:71608841-71608860 | MS.gene066253:CDS | 50.0% | |
GGGTTGTCACAGTCGACATT+AGG | + | chr1.1:71609393-71609412 | MS.gene066253:CDS | 50.0% | |
GGTCTTTGCTCATGGCACAT+GGG | + | chr1.1:71608678-71608697 | MS.gene066253:CDS | 50.0% | |
GTGGCATGTTGAGAGCAAAG+AGG | + | chr1.1:71610450-71610469 | MS.gene066253:intron | 50.0% | |
TACACGTGTTTGCGCAGATC+CGG | + | chr1.1:71609679-71609698 | MS.gene066253:CDS | 50.0% | |
TCAACGGTGTTCTTGAGGCA+GGG | + | chr1.1:71609720-71609739 | MS.gene066253:CDS | 50.0% | |
TGCAGAATGCGGTTGAGCAA+TGG | - | chr1.1:71610824-71610843 | None:intergenic | 50.0% | |
TGGTCTTTGCTCATGGCACA+TGG | + | chr1.1:71608677-71608696 | MS.gene066253:CDS | 50.0% | |
! | TTTGGTGCAGTCCCAACAGA+TGG | - | chr1.1:71609842-71609861 | None:intergenic | 50.0% |
!! | ATTGGTCTTCAGCTTGGGTG+AGG | + | chr1.1:71608892-71608911 | MS.gene066253:CDS | 50.0% |
!! | GAAGTGATGGGTCAAGGAGT+TGG | + | chr1.1:71607723-71607742 | MS.gene066253:intron | 50.0% |
ACTTCAACAACGCACCAGCC+TGG | - | chr1.1:71608626-71608645 | None:intergenic | 55.0% | |
CTCAACGGTGTTCTTGAGGC+AGG | + | chr1.1:71609719-71609738 | MS.gene066253:CDS | 55.0% | |
GGACCGCATAAGCTGACTGT+TGG | - | chr1.1:71609111-71609130 | None:intergenic | 55.0% | |
TGAGGCAGGGAAAAAGGCAG+AGG | + | chr1.1:71609733-71609752 | MS.gene066253:CDS | 55.0% | |
! | CGTCAAAAGGAGATGGTGGC+TGG | + | chr1.1:71607804-71607823 | MS.gene066253:CDS | 55.0% |
!! | GTGATGGGTCAAGGAGTTGG+AGG | + | chr1.1:71607726-71607745 | MS.gene066253:intron | 55.0% |
GGGTCAAGGAGTTGGAGGCA+CGG | + | chr1.1:71607731-71607750 | MS.gene066253:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 71607164 | 71610856 | 71607164 | ID=MS.gene066253 |
chr1.1 | mRNA | 71607164 | 71610856 | 71607164 | ID=MS.gene066253.t1;Parent=MS.gene066253 |
chr1.1 | exon | 71607164 | 71607653 | 71607164 | ID=MS.gene066253.t1.exon1;Parent=MS.gene066253.t1 |
chr1.1 | CDS | 71607164 | 71607653 | 71607164 | ID=cds.MS.gene066253.t1;Parent=MS.gene066253.t1 |
chr1.1 | exon | 71607739 | 71608029 | 71607739 | ID=MS.gene066253.t1.exon2;Parent=MS.gene066253.t1 |
chr1.1 | CDS | 71607739 | 71608029 | 71607739 | ID=cds.MS.gene066253.t1;Parent=MS.gene066253.t1 |
chr1.1 | exon | 71608475 | 71609908 | 71608475 | ID=MS.gene066253.t1.exon3;Parent=MS.gene066253.t1 |
chr1.1 | CDS | 71608475 | 71609908 | 71608475 | ID=cds.MS.gene066253.t1;Parent=MS.gene066253.t1 |
chr1.1 | exon | 71610750 | 71610856 | 71610750 | ID=MS.gene066253.t1.exon4;Parent=MS.gene066253.t1 |
chr1.1 | CDS | 71610750 | 71610856 | 71610750 | ID=cds.MS.gene066253.t1;Parent=MS.gene066253.t1 |
Gene Sequence |
Protein sequence |