AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene066278

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene066278.t1 MTR_8g023900 78.378 185 38 1 1 185 151 333 2.15e-103 305
MS.gene066278.t1 MTR_8g023900 66.667 150 49 1 34 182 1 150 1.85e-64 205
MS.gene066278.t1 MTR_8g023930 82.517 143 25 0 43 185 22 164 5.06e-84 256
MS.gene066278.t1 MTR_8g023860 75.000 152 38 0 34 185 1 152 2.13e-82 250
MS.gene066278.t1 MTR_8g023840 70.395 152 44 1 34 185 1 151 5.97e-74 228
MS.gene066278.t1 MTR_8g023880 52.096 167 55 6 33 185 2 157 2.44e-47 155
MS.gene066278.t1 MTR_5g069030 53.731 134 56 4 41 172 21 150 8.81e-41 145
MS.gene066278.t1 MTR_3g093040 52.713 129 55 4 47 173 110 234 1.12e-40 140
MS.gene066278.t1 MTR_3g093050 52.239 134 58 4 41 172 18 147 3.98e-40 143
MS.gene066278.t1 MTR_3g093050 51.852 135 59 4 41 173 18 148 6.33e-40 143
MS.gene066278.t1 MTR_2g086880 48.344 151 65 6 23 172 4 142 1.18e-38 139
MS.gene066278.t1 MTR_2g086880 48.344 151 65 6 23 172 4 142 1.49e-38 138
MS.gene066278.t1 MTR_8g063550 46.923 130 65 3 45 173 6 132 2.72e-38 134
MS.gene066278.t1 MTR_8g063550 46.923 130 65 3 45 173 6 132 6.44e-38 135
MS.gene066278.t1 MTR_8g093580 47.692 130 64 3 45 173 6 132 1.56e-37 135
MS.gene066278.t1 MTR_8g063550 46.923 130 65 3 45 173 6 132 2.86e-37 133
MS.gene066278.t1 MTR_2g064090 50.794 126 58 3 48 172 9 131 4.49e-37 131
MS.gene066278.t1 MTR_3g096140 48.462 130 63 3 44 172 6 132 6.92e-37 129
MS.gene066278.t1 MTR_3g096140 48.092 131 64 3 44 173 6 133 3.92e-36 129
MS.gene066278.t1 MTR_5g076850 48.175 137 60 4 37 172 5 131 3.37e-35 130
MS.gene066278.t1 MTR_1g090723 47.619 126 63 2 48 172 11 134 5.47e-35 129
MS.gene066278.t1 MTR_1g090723 47.619 126 63 2 48 172 11 134 7.57e-35 129
MS.gene066278.t1 MTR_1g090723 47.619 126 63 2 48 172 11 134 7.68e-35 129
MS.gene066278.t1 MTR_2g080010 43.919 148 76 4 29 175 2 143 5.89e-34 123
MS.gene066278.t1 MTR_3g064580 47.101 138 62 4 37 173 5 132 6.43e-34 126
MS.gene066278.t1 MTR_6g477900 48.819 127 61 3 48 173 9 132 8.80e-34 120
MS.gene066278.t1 MTR_3g070030 50.769 130 58 5 45 173 19 143 2.45e-33 121
MS.gene066278.t1 MTR_1g090720 49.206 126 60 3 48 172 45 167 3.19e-32 120
MS.gene066278.t1 MTR_8g099750 48.031 127 60 3 48 173 17 138 3.70e-32 115
MS.gene066278.t1 MTR_1g097300 46.875 128 64 3 46 172 20 144 9.20e-32 120
MS.gene066278.t1 MTR_5g014300 43.056 144 68 4 36 173 4 139 9.25e-32 117
MS.gene066278.t1 MTR_3g088110 46.970 132 63 4 48 178 10 135 1.12e-31 115
MS.gene066278.t1 MTR_4g089135 46.032 126 64 3 48 172 18 140 1.28e-31 117
MS.gene066278.t1 MTR_7g011130 48.462 130 61 5 45 173 19 143 2.11e-31 116
MS.gene066278.t1 MTR_1g069805 42.958 142 70 4 32 172 4 135 3.83e-31 114
MS.gene066278.t1 MTR_3g096920 46.970 132 63 4 48 178 10 135 4.35e-31 114
MS.gene066278.t1 MTR_8g467490 42.553 141 77 3 43 182 12 149 4.50e-31 116
MS.gene066278.t1 MTR_0036s0150 46.032 126 65 2 48 172 8 131 5.23e-31 118
MS.gene066278.t1 MTR_2g093810 43.478 138 67 4 37 173 13 140 6.24e-31 114
MS.gene066278.t1 MTR_4g098630 45.000 140 67 4 36 173 4 135 1.50e-30 113
MS.gene066278.t1 MTR_3g096920 46.970 132 63 4 48 178 10 135 1.53e-30 114
MS.gene066278.t1 MTR_1g008740 41.497 147 76 3 27 172 2 139 1.92e-30 114
MS.gene066278.t1 MTR_1g008740 41.497 147 76 3 27 172 16 153 2.00e-30 114
MS.gene066278.t1 MTR_7g085220 41.379 145 67 5 36 172 6 140 2.20e-30 113
MS.gene066278.t1 MTR_2157s0010 43.262 141 71 5 34 172 1 134 2.65e-30 112
MS.gene066278.t1 MTR_7g005280 45.669 127 62 3 48 173 18 138 3.16e-30 111
MS.gene066278.t1 MTR_4g081870 46.825 126 61 4 48 172 12 132 3.17e-30 112
MS.gene066278.t1 MTR_7g011120 47.692 130 62 5 45 173 8 132 3.24e-30 112
MS.gene066278.t1 MTR_6g011860 45.113 133 68 4 42 173 12 140 3.45e-30 114
MS.gene066278.t1 MTR_7g100990 41.481 135 73 4 48 179 14 145 8.48e-30 112
MS.gene066278.t1 MTR_3g435150 43.226 155 70 9 19 172 2 139 1.05e-29 111
MS.gene066278.t1 MTR_7g097090 42.958 142 70 4 32 172 4 135 1.05e-29 110
MS.gene066278.t1 MTR_5g040420 42.424 132 72 3 43 173 12 140 1.12e-29 112
MS.gene066278.t1 MTR_3g096140 47.368 114 56 3 61 173 2 112 1.29e-29 111
MS.gene066278.t1 MTR_8g094580 43.939 132 67 4 48 178 10 135 1.94e-29 110
MS.gene066278.t1 MTR_4g035590 47.244 127 62 4 48 172 11 134 2.63e-29 111
MS.gene066278.t1 MTR_5g012080 45.588 136 66 5 41 172 3 134 3.16e-29 110
MS.gene066278.t1 MTR_4g108760 44.094 127 65 5 48 173 20 141 6.12e-29 110
MS.gene066278.t1 MTR_2g068880 45.113 133 68 4 43 172 20 150 6.73e-29 109
MS.gene066278.t1 MTR_3g109340 42.446 139 73 4 48 182 25 160 7.98e-29 110
MS.gene066278.t1 MTR_2g078700 44.882 127 66 3 48 173 26 149 8.95e-29 110
MS.gene066278.t1 MTR_6g032770 40.625 128 72 3 47 173 20 144 9.27e-29 110
MS.gene066278.t1 MTR_2g068920 45.113 133 68 4 43 172 19 149 9.36e-29 108
MS.gene066278.t1 MTR_4g052620 41.791 134 74 3 43 173 3 135 1.21e-28 107
MS.gene066278.t1 MTR_3g109340 44.444 126 66 3 48 172 25 147 1.59e-28 108
MS.gene066278.t1 MTR_8g076110 40.541 148 76 5 34 179 2 139 1.76e-28 108
MS.gene066278.t1 MTR_7g085260 39.869 153 76 6 23 172 5 144 2.60e-28 108
MS.gene066278.t1 MTR_3g116070 36.424 151 86 3 23 172 8 149 2.89e-28 108
MS.gene066278.t1 MTR_6g012670 45.669 127 63 4 48 173 23 144 4.77e-28 107
MS.gene066278.t1 MTR_4g134460 41.221 131 72 4 43 172 52 178 5.30e-28 108
MS.gene066278.t1 MTR_2g079990 41.304 138 68 5 37 173 15 140 5.47e-28 107
MS.gene066278.t1 MTR_6g084430 42.143 140 68 6 34 172 1 128 6.48e-28 107
MS.gene066278.t1 MTR_5g041940 45.669 127 63 5 48 173 6 127 6.90e-28 105
MS.gene066278.t1 MTR_2g079990 41.606 137 67 5 37 172 15 139 7.35e-28 107
MS.gene066278.t1 MTR_4g036030 45.669 127 64 4 48 172 10 133 8.61e-28 107
MS.gene066278.t1 MTR_1g096430 43.511 131 69 4 48 176 10 137 2.13e-27 105
MS.gene066278.t1 MTR_3g070040 50.000 130 56 6 45 173 8 129 2.22e-27 105
MS.gene066278.t1 MTR_5g021710 40.845 142 72 5 34 173 4 135 2.32e-27 105
MS.gene066278.t1 MTR_2g062730 44.094 127 67 4 48 172 13 137 2.39e-27 105
MS.gene066278.t1 MTR_4g075980 41.538 130 71 4 46 173 16 142 3.21e-27 104
MS.gene066278.t1 MTR_4g101680 44.094 127 66 4 48 172 10 133 3.54e-27 105
MS.gene066278.t1 MTR_8g059170 41.304 138 68 5 37 173 13 138 3.74e-27 105
MS.gene066278.t1 MTR_2g064470 42.520 127 65 4 48 173 14 133 4.11e-27 104
MS.gene066278.t1 MTR_3g098810 43.411 129 65 4 48 173 17 140 1.36e-26 99.8
MS.gene066278.t1 MTR_3g098810 43.750 128 64 4 48 172 17 139 5.48e-26 100
MS.gene066278.t1 MTR_5g090970 41.538 130 71 4 46 173 19 145 1.49e-25 100
MS.gene066278.t1 MTR_5g090970 41.860 129 69 4 46 172 19 143 4.72e-25 99.0
MS.gene066278.t1 MTR_8g024480 41.176 136 73 5 48 179 18 150 6.12e-25 100
MS.gene066278.t1 MTR_2g086690 41.860 129 70 4 48 172 7 134 9.46e-25 97.1
MS.gene066278.t1 MTR_7g105170 34.507 142 88 4 42 179 1 141 1.33e-20 86.3
MS.gene066278.t1 MTR_4g094302 33.333 126 72 5 48 172 14 128 6.67e-17 74.3
MS.gene066278.t1 MTR_4g094302 33.333 126 72 4 48 172 14 128 2.20e-16 73.6
MS.gene066278.t1 MTR_8g094580 44.304 79 40 2 101 178 6 81 5.48e-16 73.6
MS.gene066278.t1 MTR_3g096400 32.857 140 77 4 35 173 4 127 2.01e-15 71.6
MS.gene066278.t1 MTR_7g070140 41.176 85 48 2 91 173 6 90 3.93e-15 68.9
MS.gene066278.t1 MTR_8g093790 31.818 132 70 6 48 179 13 124 2.85e-12 62.8
MS.gene066278.t1 MTR_7g116460 31.111 135 72 5 51 173 11 136 6.99e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene066278.t1 AT3G49530 54.286 140 60 4 41 179 9 145 4.35e-45 154
MS.gene066278.t1 AT3G49530 54.286 140 60 4 41 179 9 145 1.39e-44 153
MS.gene066278.t1 AT4G35580 55.970 134 55 3 41 173 5 135 2.76e-44 154
MS.gene066278.t1 AT4G35580 55.970 134 55 3 41 173 5 135 2.86e-44 153
MS.gene066278.t1 AT4G35580 55.970 134 55 3 41 173 5 135 3.05e-44 154
MS.gene066278.t1 AT4G01550 58.462 130 52 2 46 173 5 134 6.01e-44 152
MS.gene066278.t1 AT1G33060 54.887 133 56 3 41 172 20 149 1.19e-43 154
MS.gene066278.t1 AT1G33060 54.887 133 56 3 41 172 20 149 1.33e-43 153
MS.gene066278.t1 AT5G24590 52.239 134 61 3 41 173 9 140 5.79e-42 146
MS.gene066278.t1 AT4G01540 48.571 140 69 3 46 182 5 144 7.24e-40 139
MS.gene066278.t1 AT4G01540 48.571 140 69 3 46 182 5 144 1.05e-39 140
MS.gene066278.t1 AT4G01520 48.551 138 68 3 48 182 7 144 1.27e-39 137
MS.gene066278.t1 AT4G01540 48.571 140 69 3 46 182 5 144 1.96e-39 139
MS.gene066278.t1 AT4G01540 48.571 140 69 3 46 182 5 144 2.52e-39 139
MS.gene066278.t1 AT3G10490 50.394 127 59 3 48 173 30 153 4.96e-39 134
MS.gene066278.t1 AT4G17980 46.429 140 73 2 48 186 9 147 1.56e-38 133
MS.gene066278.t1 AT3G10480 50.794 126 58 3 48 172 30 152 1.64e-38 137
MS.gene066278.t1 AT3G10480 50.794 126 58 3 48 172 30 152 1.78e-38 137
MS.gene066278.t1 AT4G17980 46.429 140 73 2 48 186 9 147 3.34e-38 133
MS.gene066278.t1 AT3G10490 50.394 127 59 3 48 173 30 153 1.58e-37 134
MS.gene066278.t1 AT5G17260 50.365 137 57 4 37 172 5 131 1.83e-37 135
MS.gene066278.t1 AT3G03200 50.365 137 57 4 37 172 5 131 1.03e-36 132
MS.gene066278.t1 AT3G17730 48.031 127 62 3 48 173 9 132 1.09e-34 122
MS.gene066278.t1 AT5G39820 44.928 138 72 3 43 179 18 152 1.49e-34 124
MS.gene066278.t1 AT1G02230 45.324 139 72 3 47 183 5 141 2.93e-34 124
MS.gene066278.t1 AT2G27300 45.946 148 65 6 27 172 4 138 3.64e-34 123
MS.gene066278.t1 AT1G65910 48.175 137 60 4 37 172 5 131 5.30e-34 127
MS.gene066278.t1 AT5G04410 45.139 144 68 4 31 173 2 135 1.01e-33 125
MS.gene066278.t1 AT1G26870 46.565 131 66 3 43 172 14 141 3.68e-33 122
MS.gene066278.t1 AT3G10500 47.552 143 64 5 31 172 2 134 4.32e-33 124
MS.gene066278.t1 AT1G01720 46.970 132 63 4 48 178 10 135 1.06e-32 119
MS.gene066278.t1 AT5G46590 44.882 127 67 3 48 173 9 133 2.84e-32 117
MS.gene066278.t1 AT5G08790 45.865 133 65 4 47 178 9 135 2.93e-32 117
MS.gene066278.t1 AT5G09330 50.000 126 59 3 48 172 9 131 3.00e-32 120
MS.gene066278.t1 AT5G09330 50.000 126 59 3 48 172 9 131 3.00e-32 120
MS.gene066278.t1 AT5G09330 50.000 126 59 3 48 172 9 131 3.00e-32 120
MS.gene066278.t1 AT5G09330 50.000 126 59 3 48 172 9 131 3.00e-32 120
MS.gene066278.t1 AT5G09330 50.000 126 59 3 48 172 9 131 3.00e-32 120
MS.gene066278.t1 AT3G10480 40.625 160 58 5 48 173 30 186 3.71e-32 121
MS.gene066278.t1 AT5G46590 44.882 127 67 3 48 173 9 133 4.07e-32 117
MS.gene066278.t1 AT3G44290 43.571 140 66 5 34 172 11 138 6.51e-32 115
MS.gene066278.t1 AT3G04070 42.282 149 72 5 31 175 3 141 7.96e-32 117
MS.gene066278.t1 AT3G29035 43.919 148 70 6 27 173 13 148 8.85e-32 117
MS.gene066278.t1 AT3G04070 42.282 149 72 5 31 175 3 141 1.15e-31 117
MS.gene066278.t1 AT5G39610 48.031 127 60 5 48 173 23 144 1.15e-31 115
MS.gene066278.t1 AT1G34190 46.154 130 66 3 44 172 15 141 1.31e-31 119
MS.gene066278.t1 AT5G64060 44.882 127 66 3 48 173 9 132 1.34e-31 117
MS.gene066278.t1 AT5G61430 45.926 135 66 6 48 180 19 148 3.51e-31 115
MS.gene066278.t1 AT5G04395 40.127 157 73 5 36 179 26 174 3.64e-31 112
MS.gene066278.t1 AT5G22290 41.333 150 75 5 24 172 8 145 3.65e-31 115
MS.gene066278.t1 AT3G44290 43.571 140 66 5 34 172 11 138 6.35e-31 115
MS.gene066278.t1 AT1G34180 45.385 130 67 3 44 172 15 141 2.54e-30 115
MS.gene066278.t1 AT3G04060 41.026 156 77 6 18 172 3 144 2.87e-30 113
MS.gene066278.t1 AT5G07680 45.185 135 67 6 48 180 6 135 3.35e-30 112
MS.gene066278.t1 AT3G15510 44.000 125 66 3 49 172 21 142 3.72e-30 113
MS.gene066278.t1 AT5G07680 45.185 135 67 6 48 180 20 149 4.07e-30 112
MS.gene066278.t1 AT5G53950 46.032 126 64 3 48 172 20 142 6.62e-30 113
MS.gene066278.t1 AT5G66300 42.857 147 70 6 37 181 11 145 9.30e-30 111
MS.gene066278.t1 AT2G17040 42.857 133 71 4 43 173 4 133 1.15e-29 110
MS.gene066278.t1 AT1G34180 44.444 135 68 4 48 181 19 147 1.20e-29 114
MS.gene066278.t1 AT1G54330 45.255 137 64 4 37 172 5 131 1.27e-29 110
MS.gene066278.t1 AT1G71930 43.972 141 67 5 34 172 5 135 1.59e-29 111
MS.gene066278.t1 AT1G71930 43.972 141 67 5 34 172 5 135 1.59e-29 111
MS.gene066278.t1 AT1G77450 43.704 135 69 4 45 178 10 138 3.70e-29 108
MS.gene066278.t1 AT4G10350 45.588 136 69 4 48 181 12 144 4.03e-29 110
MS.gene066278.t1 AT3G15500 42.336 137 66 5 37 172 13 137 4.70e-29 109
MS.gene066278.t1 AT4G27410 41.304 138 68 5 37 173 13 138 4.73e-29 109
MS.gene066278.t1 AT3G15170 42.963 135 72 4 48 180 23 154 5.51e-29 109
MS.gene066278.t1 AT2G24430 44.444 126 66 3 48 172 19 141 5.52e-29 109
MS.gene066278.t1 AT2G24430 44.444 126 66 3 48 172 19 141 5.52e-29 109
MS.gene066278.t1 AT5G18270 45.238 126 64 4 48 172 24 145 6.04e-29 109
MS.gene066278.t1 AT3G12910 43.066 137 72 4 46 179 22 155 8.48e-29 108
MS.gene066278.t1 AT5G63790 41.290 155 76 6 30 178 33 178 1.10e-28 108
MS.gene066278.t1 AT1G33280 45.926 135 67 5 48 179 11 142 1.27e-28 108
MS.gene066278.t1 AT5G63790 41.290 155 76 6 30 178 43 188 1.32e-28 108
MS.gene066278.t1 AT5G13180 41.732 127 67 3 48 173 17 137 1.98e-28 106
MS.gene066278.t1 AT5G18270 44.094 127 66 4 48 173 24 146 2.03e-28 108
MS.gene066278.t1 AT2G33480 43.972 141 66 6 48 186 18 147 2.34e-28 107
MS.gene066278.t1 AT1G02250 43.571 140 74 4 47 184 5 141 2.66e-28 108
MS.gene066278.t1 AT1G76420 42.063 126 69 3 48 172 25 147 3.06e-28 108
MS.gene066278.t1 AT1G61110 42.143 140 72 5 36 172 7 140 3.69e-28 107
MS.gene066278.t1 AT1G32510 40.741 135 73 3 44 172 5 138 5.06e-28 106
MS.gene066278.t1 AT5G62380 42.520 127 68 4 48 172 10 133 5.47e-28 107
MS.gene066278.t1 AT5G62380 42.520 127 68 4 48 172 10 133 5.47e-28 107
MS.gene066278.t1 AT1G52890 42.336 137 66 5 37 172 13 137 6.00e-28 107
MS.gene066278.t1 AT1G69490 41.221 131 69 5 48 175 12 137 7.18e-28 105
MS.gene066278.t1 AT2G02450 40.769 130 72 4 44 172 50 175 7.19e-28 107
MS.gene066278.t1 AT2G33480 44.526 137 62 6 48 182 18 142 8.87e-28 105
MS.gene066278.t1 AT2G02450 40.769 130 72 4 44 172 50 175 9.65e-28 107
MS.gene066278.t1 AT1G12260 41.732 127 69 4 48 172 10 133 1.65e-27 106
MS.gene066278.t1 AT4G36160 41.007 139 70 5 37 173 13 141 1.75e-27 106
MS.gene066278.t1 AT4G36160 41.304 138 69 5 37 172 9 136 1.77e-27 106
MS.gene066278.t1 AT4G36160 41.304 138 69 5 37 172 9 136 1.77e-27 106
MS.gene066278.t1 AT1G12260 41.732 127 69 4 48 172 10 133 2.62e-27 106
MS.gene066278.t1 AT1G62700 43.307 127 67 4 48 172 10 133 3.41e-27 106
MS.gene066278.t1 AT1G62700 43.307 127 67 4 48 172 10 133 3.41e-27 106
MS.gene066278.t1 AT3G18400 39.716 141 72 5 34 173 1 129 4.44e-27 104
MS.gene066278.t1 AT1G34180 41.549 142 67 4 44 172 15 153 6.27e-27 106
MS.gene066278.t1 AT2G18060 40.426 141 72 5 35 173 6 136 6.36e-27 105
MS.gene066278.t1 AT2G18060 40.426 141 72 5 35 173 6 136 6.36e-27 105
MS.gene066278.t1 AT1G79580 44.882 127 66 4 48 172 20 144 7.53e-27 104
MS.gene066278.t1 AT1G79580 44.882 127 66 4 48 172 20 144 7.53e-27 104
MS.gene066278.t1 AT1G79580 44.882 127 66 4 48 172 20 144 7.53e-27 104
MS.gene066278.t1 AT1G79580 44.882 127 66 4 48 172 20 144 7.53e-27 104
MS.gene066278.t1 AT1G79580 44.882 127 66 4 48 172 20 144 7.53e-27 104
MS.gene066278.t1 AT2G43000 41.860 129 69 4 46 173 19 142 1.12e-26 102
MS.gene066278.t1 AT5G22380 40.000 135 76 4 43 173 3 136 1.22e-26 101
MS.gene066278.t1 AT1G56010 40.411 146 74 5 29 172 9 143 1.29e-26 103
MS.gene066278.t1 AT1G34180 41.497 147 67 6 48 181 19 159 1.53e-26 105
MS.gene066278.t1 AT4G27410 37.908 153 69 6 37 173 13 155 1.55e-26 103
MS.gene066278.t1 AT1G02220 42.857 140 72 5 47 185 5 137 4.49e-26 103
MS.gene066278.t1 AT3G04430 41.781 146 69 5 51 185 6 146 5.19e-26 99.0
MS.gene066278.t1 AT4G28530 39.716 141 67 3 48 172 13 151 6.18e-26 102
MS.gene066278.t1 AT3G61910 42.520 127 68 4 48 172 14 137 1.65e-25 100
MS.gene066278.t1 AT2G46770 40.945 127 70 4 48 172 19 142 1.72e-24 98.6
MS.gene066278.t1 AT3G44350 37.209 129 77 3 47 172 7 134 1.78e-24 94.0
MS.gene066278.t1 AT1G01010 40.816 147 77 4 47 185 5 149 3.24e-24 98.6
MS.gene066278.t1 AT3G04420 40.714 140 77 5 47 184 5 140 4.62e-24 96.3
MS.gene066278.t1 AT3G04420 40.714 140 77 5 47 184 5 140 6.86e-24 96.7
MS.gene066278.t1 AT3G44350 37.209 129 77 3 47 172 7 134 1.16e-23 94.0
MS.gene066278.t1 AT3G12977 39.683 126 70 4 48 172 21 141 1.57e-23 94.4
MS.gene066278.t1 AT1G32770 40.945 127 70 4 48 172 19 142 2.83e-23 95.1
MS.gene066278.t1 AT1G52880 44.186 129 62 4 49 172 21 144 5.23e-23 94.0
MS.gene066278.t1 AT1G32870 44.444 126 64 4 48 172 13 133 1.27e-22 94.4
MS.gene066278.t1 AT1G32870 44.444 126 64 4 48 172 13 133 1.32e-22 94.4
MS.gene066278.t1 AT1G32870 44.444 126 64 4 48 172 49 169 1.46e-22 94.4
MS.gene066278.t1 AT5G64530 36.800 125 65 5 48 172 6 116 6.65e-20 82.0
MS.gene066278.t1 AT5G64530 37.600 125 64 5 48 172 6 116 2.11e-19 81.6
MS.gene066278.t1 AT4G28530 36.066 122 54 3 32 138 4 116 8.32e-16 73.9
MS.gene066278.t1 AT4G10350 41.573 89 49 2 94 181 11 97 1.95e-15 72.8
MS.gene066278.t1 AT5G61430 42.529 87 46 4 96 180 1 85 3.37e-15 72.0
MS.gene066278.t1 AT1G56010 43.056 72 38 2 102 172 7 76 4.08e-14 68.9
MS.gene066278.t1 AT3G12977 43.056 72 38 2 102 172 19 88 5.15e-14 68.2
MS.gene066278.t1 AT2G33480 41.667 84 41 4 101 182 8 85 6.08e-12 62.4

Find 29 sgRNAs with CRISPR-Local

Find 57 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAATCCCAATAACTTTAT+TGG 0.134192 8.1:+76821677 None:intergenic
AGAGGTACCAATAAAGTTAT+TGG 0.244855 8.1:-76821684 MS.gene066278:CDS
ACAAGTATGCAAAGAGTAAA+AGG 0.285734 8.1:-76821770 MS.gene066278:CDS
CAAAGAGTAAAAGGTTTAAA+AGG 0.311590 8.1:-76821761 MS.gene066278:CDS
GAGGTACCAATAAAGTTATT+GGG 0.318938 8.1:-76821683 MS.gene066278:CDS
TTTAAAAGGACAACTAATAA+TGG 0.327657 8.1:-76821747 MS.gene066278:CDS
TTTGCATACTTGTATTCAAT+AGG 0.337933 8.1:+76821780 None:intergenic
TTGCATACTTGTATTCAATA+GGG 0.378474 8.1:+76821781 None:intergenic
AAAAGAGGTTGTCATTTGTC+TGG 0.400238 8.1:+76822094 None:intergenic
TTCCTGTTGTTAAGACCAAT+TGG 0.413700 8.1:-76821626 MS.gene066278:CDS
ATCCAATTGGTCTTAACAAC+AGG 0.424819 8.1:+76821624 None:intergenic
TTGGTCTTAACAACAGGAAC+AGG 0.426117 8.1:+76821630 None:intergenic
AGCTATAACATTGTTTGCAA+TGG 0.437112 8.1:+76821971 None:intergenic
ATCAAGATTTGGAGGAAAAG+AGG 0.459281 8.1:+76822079 None:intergenic
GATCGTAGCATTAAGATTAG+AGG 0.479770 8.1:-76821702 MS.gene066278:CDS
TATACAATGGTGTGTGATGA+AGG 0.485940 8.1:-76822125 MS.gene066278:CDS
ATACTCATGAATGATCCAAT+TGG 0.492502 8.1:+76821611 None:intergenic
TAAAATCTGATGACCAAGAA+TGG 0.512088 8.1:-76821815 MS.gene066278:CDS
TGCCACCTTTGATGATCACC+AGG 0.520522 8.1:-76821583 MS.gene066278:intron
TGTATGCAAGTACGAACCTT+GGG 0.541003 8.1:-76821940 MS.gene066278:CDS
TTAACAAGCTCTTCATCTGT+TGG 0.543895 8.1:+76822029 None:intergenic
ACAAACCTGGTGATCATCAA+AGG 0.565673 8.1:+76821578 None:intergenic
TACGAACCTTGGGACTTACC+AGG 0.570351 8.1:-76821930 MS.gene066278:intron
TACAATGGTGTGTGATGAAG+GGG 0.571785 8.1:-76822123 MS.gene066278:CDS
TGCCGACATAAAAGGTGAAG+AGG 0.573156 8.1:-76822153 MS.gene066278:CDS
TGAAGAGGAAAATTATACAA+TGG 0.596603 8.1:-76822138 MS.gene066278:CDS
ATGTATGCAAGTACGAACCT+TGG 0.609666 8.1:-76821941 MS.gene066278:CDS
ATACAATGGTGTGTGATGAA+GGG 0.616411 8.1:-76822124 MS.gene066278:CDS
AACCTGGTGATCATCAAAGG+TGG 0.671633 8.1:+76821581 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAAGAAAATAATGATA+GGG + chr8.1:76821746-76821765 None:intergenic 10.0%
!!! TTTTTTAAGAAAATAATGAT+AGG + chr8.1:76821747-76821766 None:intergenic 10.0%
!! TCATACAAATAAATTACTAA+GGG + chr8.1:76822156-76822175 None:intergenic 15.0%
!! TTCATACAAATAAATTACTA+AGG + chr8.1:76822157-76822176 None:intergenic 15.0%
!! CATACAAATAAATTACTAAG+GGG + chr8.1:76822155-76822174 None:intergenic 20.0%
!! TACCTTAAAAATAAGATACT+TGG - chr8.1:76821633-76821652 MS.gene066278:CDS 20.0%
!! TTTAAAAGGACAACTAATAA+TGG - chr8.1:76821888-76821907 MS.gene066278:intron 20.0%
!!! TACCAAGTATCTTATTTTTA+AGG + chr8.1:76821638-76821657 None:intergenic 20.0%
! ACCAGAAAAAAATCAAGATT+TGG + chr8.1:76821570-76821589 None:intergenic 25.0%
! AGAAAAAAATCAAGATTTGG+AGG + chr8.1:76821567-76821586 None:intergenic 25.0%
! AGCAAATGTTATTAAACTAG+AGG - chr8.1:76822188-76822207 MS.gene066278:CDS 25.0%
! ATTAAAAATGCCGACATAAA+AGG - chr8.1:76821474-76821493 MS.gene066278:intron 25.0%
! CAAAGAGTAAAAGGTTTAAA+AGG - chr8.1:76821874-76821893 MS.gene066278:intron 25.0%
! CTTAATCCCAATAACTTTAT+TGG + chr8.1:76821961-76821980 None:intergenic 25.0%
! TGAAGAGGAAAATTATACAA+TGG - chr8.1:76821497-76821516 MS.gene066278:intron 25.0%
! TTGCATACTTGTATTCAATA+GGG + chr8.1:76821857-76821876 None:intergenic 25.0%
! TTTGCATACTTGTATTCAAT+AGG + chr8.1:76821858-76821877 None:intergenic 25.0%
!! AAATAATGATAGGGTTTGTT+TGG + chr8.1:76821737-76821756 None:intergenic 25.0%
!!! AATCTTGATTTTTTTCTGGT+TGG - chr8.1:76821570-76821589 MS.gene066278:intron 25.0%
!!! TCCAAATCTTGATTTTTTTC+TGG - chr8.1:76821566-76821585 MS.gene066278:intron 25.0%
ACAAGTATGCAAAGAGTAAA+AGG - chr8.1:76821865-76821884 MS.gene066278:intron 30.0%
AGCTATAACATTGTTTGCAA+TGG + chr8.1:76821667-76821686 None:intergenic 30.0%
ATACTCATGAATGATCCAAT+TGG + chr8.1:76822027-76822046 None:intergenic 30.0%
TAAAATCTGATGACCAAGAA+TGG - chr8.1:76821820-76821839 MS.gene066278:CDS 30.0%
TACAGTAAACATAACAAACC+TGG + chr8.1:76822073-76822092 None:intergenic 30.0%
! GAGGTACCAATAAAGTTATT+GGG - chr8.1:76821952-76821971 MS.gene066278:CDS 30.0%
! GGACAACTAATAATGGTTTT+TGG - chr8.1:76821895-76821914 MS.gene066278:intron 30.0%
!! AGAGGTACCAATAAAGTTAT+TGG - chr8.1:76821951-76821970 MS.gene066278:CDS 30.0%
!! AGGTTTGTTATGTTTACTGT+AGG - chr8.1:76822072-76822091 MS.gene066278:CDS 30.0%
!! ATTTTGAGTATCATTTGTCG+TGG - chr8.1:76822128-76822147 MS.gene066278:CDS 30.0%
!! GGTTTGTTATGTTTACTGTA+GGG - chr8.1:76822073-76822092 MS.gene066278:CDS 30.0%
!!! TTCATCTTTTTCAGCTTGTT+CGG - chr8.1:76821794-76821813 MS.gene066278:CDS 30.0%
ATACAATGGTGTGTGATGAA+GGG - chr8.1:76821511-76821530 MS.gene066278:intron 35.0%
ATCAAGATTTGGAGGAAAAG+AGG + chr8.1:76821559-76821578 None:intergenic 35.0%
GATCGTAGCATTAAGATTAG+AGG - chr8.1:76821933-76821952 MS.gene066278:CDS 35.0%
TATACAATGGTGTGTGATGA+AGG - chr8.1:76821510-76821529 MS.gene066278:intron 35.0%
TTAACAAGCTCTTCATCTGT+TGG + chr8.1:76821609-76821628 None:intergenic 35.0%
TTCCTGTTGTTAAGACCAAT+TGG - chr8.1:76822009-76822028 MS.gene066278:CDS 35.0%
! AAAAGAGGTTGTCATTTGTC+TGG + chr8.1:76821544-76821563 None:intergenic 35.0%
! TTCCTCTTCACCTTTTATGT+CGG + chr8.1:76821487-76821506 None:intergenic 35.0%
!! AATGGTTTTTGGAAAGCTAC+TGG - chr8.1:76821906-76821925 MS.gene066278:intron 35.0%
!! ATCCAATTGGTCTTAACAAC+AGG + chr8.1:76822014-76822033 None:intergenic 35.0%
!! TTTTTGGAAAGCTACTGGAA+AGG - chr8.1:76821911-76821930 MS.gene066278:intron 35.0%
ACAAACCTGGTGATCATCAA+AGG + chr8.1:76822060-76822079 None:intergenic 40.0%
ATGTATGCAAGTACGAACCT+TGG - chr8.1:76821694-76821713 MS.gene066278:CDS 40.0%
GGCACAAGAAAAACCATTCT+TGG + chr8.1:76821836-76821855 None:intergenic 40.0%
TACAATGGTGTGTGATGAAG+GGG - chr8.1:76821512-76821531 MS.gene066278:intron 40.0%
TGTATGCAAGTACGAACCTT+GGG - chr8.1:76821695-76821714 MS.gene066278:CDS 40.0%
! CAACAGGAACAGGATTTTCA+TGG + chr8.1:76821998-76822017 None:intergenic 40.0%
! TTTTTACCTGGTAAGTCCCA+AGG + chr8.1:76821714-76821733 None:intergenic 40.0%
!! TTGGTCTTAACAACAGGAAC+AGG + chr8.1:76822008-76822027 None:intergenic 40.0%
!!! GGGTTTGTTTGGTTTTTACC+TGG + chr8.1:76821726-76821745 None:intergenic 40.0%
AACCTGGTGATCATCAAAGG+TGG + chr8.1:76822057-76822076 None:intergenic 45.0%
TGCCGACATAAAAGGTGAAG+AGG - chr8.1:76821482-76821501 MS.gene066278:intron 45.0%
!! TTTCTTAAAAAAAAAAAAAA+AGG - chr8.1:76821755-76821774 MS.gene066278:CDS 5.0%
TACGAACCTTGGGACTTACC+AGG - chr8.1:76821705-76821724 MS.gene066278:CDS 50.0%
! TGCCACCTTTGATGATCACC+AGG - chr8.1:76822052-76822071 MS.gene066278:CDS 50.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 76821450 76822207 76821450 ID=MS.gene066278
chr8.1 mRNA 76821450 76822207 76821450 ID=MS.gene066278.t1;Parent=MS.gene066278
chr8.1 exon 76821931 76822207 76821931 ID=MS.gene066278.t1.exon1;Parent=MS.gene066278.t1
chr8.1 CDS 76821931 76822207 76821931 ID=cds.MS.gene066278.t1;Parent=MS.gene066278.t1
chr8.1 exon 76821584 76821849 76821584 ID=MS.gene066278.t1.exon2;Parent=MS.gene066278.t1
chr8.1 CDS 76821584 76821849 76821584 ID=cds.MS.gene066278.t1;Parent=MS.gene066278.t1
chr8.1 exon 76821450 76821467 76821450 ID=MS.gene066278.t1.exon3;Parent=MS.gene066278.t1
chr8.1 CDS 76821450 76821467 76821450 ID=cds.MS.gene066278.t1;Parent=MS.gene066278.t1
Gene Sequence

>MS.gene066278

AGGACTCATGTCTTATGTCACTTGATTAAAAATGCCGACATAAAAGGTGAAGAGGAAAATTATACAATGGTGTGTGATGAAGGGGAGTCTTCCAGACAAATGACAACCTCTTTTCCTCCAAATCTTGATTTTTTTCTGGTTGGACTCAGATTCTGTCCAACAGATGAAGAGCTTGTTAAGCACTACCTTAAAAATAAGATACTTGGTAATGATTCCATTGCAAACAATGTTATAGCTGAAGTTGATGTATGCAAGTACGAACCTTGGGACTTACCAGGTAAAAACCAAACAAACCCTATCATTATTTTCTTAAAAAAAAAAAAAAAGGAATCTTTCTAATGTTTTTCATCTTTTTCAGCTTGTTCGGTGATAAAATCTGATGACCAAGAATGGTTTTTCTTGTGCCCTATTGAATACAAGTATGCAAAGAGTAAAAGGTTTAAAAGGACAACTAATAATGGTTTTTGGAAAGCTACTGGAAAGGATCGTAGCATTAAGATTAGAGGTACCAATAAAGTTATTGGGATTAAGAAGACTCTTGTTTACCATGAAAATCCTGTTCCTGTTGTTAAGACCAATTGGATCATTCATGAGTATCATGATGCCACCTTTGATGATCACCAGGTTTGTTATGTTTACTGTAGGGTTTTAATTTTTCGTGTTTTTATCATGATGTTAATTTTGAGTATCATTTGTCGTGGACCCCTTAGTAATTTATTTGTATGAATTGTATAATAAAGCAAATGTTATTAAACTAG
Protein sequence

>MS.gene066278.t1

RTHVLCHLIKNADIKGEEENYTMVCDEGESSRQMTTSFPPNLDFFLVGLRFCPTDEELVKHYLKNKILGNDSIANNVIAEVDVCKYEPWDLPACSVIKSDDQEWFFLCPIEYKYAKSKRFKRTTNNGFWKATGKDRSIKIRGTNKVIGIKKTLVYHENPVPVVKTNWIIHEYHDATFDDHQQMLLN