Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06630.t1 | XP_003602338.1 | 83.9 | 559 | 67 | 5 | 1 | 555 | 1 | 540 | 5.70E-235 | 823.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06630.t1 | O81001 | 55.2 | 96 | 25 | 3 | 128 | 206 | 133 | 227 | 5.6e-21 | 104.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06630.t1 | G7J891 | 83.9 | 559 | 67 | 5 | 1 | 555 | 1 | 540 | 4.1e-235 | 823.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene06630.t1 | TF | GRF |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06630.t1 | MTR_3g092330 | 91.771 | 559 | 23 | 7 | 1 | 555 | 1 | 540 | 0.0 | 925 |
MS.gene06630.t1 | MTR_1g017490 | 52.632 | 133 | 37 | 3 | 110 | 218 | 126 | 256 | 1.74e-33 | 135 |
MS.gene06630.t1 | MTR_1g017490 | 54.331 | 127 | 28 | 4 | 116 | 218 | 3 | 123 | 5.64e-33 | 132 |
MS.gene06630.t1 | MTR_0001s0490 | 53.153 | 111 | 35 | 2 | 128 | 221 | 25 | 135 | 3.86e-32 | 127 |
MS.gene06630.t1 | MTR_5g027030 | 57.000 | 100 | 35 | 2 | 126 | 218 | 14 | 112 | 8.51e-30 | 120 |
MS.gene06630.t1 | MTR_8g020560 | 49.541 | 109 | 37 | 2 | 129 | 219 | 12 | 120 | 2.27e-29 | 119 |
MS.gene06630.t1 | MTR_2g041430 | 50.000 | 114 | 35 | 3 | 128 | 219 | 7 | 120 | 4.94e-29 | 118 |
MS.gene06630.t1 | MTR_2g041430 | 50.000 | 114 | 35 | 3 | 128 | 219 | 7 | 120 | 5.56e-29 | 118 |
MS.gene06630.t1 | MTR_2g041430 | 50.000 | 114 | 35 | 3 | 128 | 219 | 7 | 120 | 5.56e-29 | 118 |
MS.gene06630.t1 | MTR_7g104050 | 44.604 | 139 | 50 | 3 | 109 | 225 | 60 | 193 | 9.89e-29 | 117 |
MS.gene06630.t1 | MTR_4g125490 | 49.153 | 118 | 42 | 3 | 128 | 227 | 9 | 126 | 1.32e-28 | 118 |
MS.gene06630.t1 | MTR_7g104050 | 44.604 | 139 | 50 | 3 | 109 | 225 | 60 | 193 | 1.54e-28 | 117 |
MS.gene06630.t1 | MTR_8g035910 | 46.218 | 119 | 51 | 3 | 127 | 233 | 48 | 165 | 4.35e-23 | 102 |
MS.gene06630.t1 | MTR_8g035910 | 56.667 | 60 | 25 | 1 | 154 | 212 | 276 | 335 | 8.48e-14 | 73.9 |
MS.gene06630.t1 | MTR_8g035640 | 52.542 | 59 | 27 | 1 | 155 | 212 | 31 | 89 | 1.63e-12 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06630.t1 | AT4G37740 | 54.701 | 117 | 35 | 3 | 128 | 227 | 164 | 279 | 5.02e-33 | 133 |
MS.gene06630.t1 | AT5G53660 | 56.140 | 114 | 46 | 2 | 126 | 235 | 57 | 170 | 1.41e-32 | 129 |
MS.gene06630.t1 | AT2G22840 | 54.310 | 116 | 35 | 2 | 128 | 226 | 133 | 247 | 3.75e-31 | 127 |
MS.gene06630.t1 | AT3G13960 | 51.327 | 113 | 37 | 2 | 124 | 218 | 12 | 124 | 8.05e-30 | 121 |
MS.gene06630.t1 | AT4G24150 | 41.718 | 163 | 64 | 5 | 102 | 242 | 90 | 243 | 3.75e-29 | 120 |
MS.gene06630.t1 | AT4G24150 | 41.718 | 163 | 64 | 5 | 102 | 242 | 128 | 281 | 7.27e-29 | 120 |
MS.gene06630.t1 | AT2G36400 | 52.137 | 117 | 35 | 1 | 129 | 224 | 77 | 193 | 1.99e-28 | 117 |
MS.gene06630.t1 | AT3G52910 | 49.107 | 112 | 35 | 1 | 129 | 218 | 83 | 194 | 2.90e-26 | 111 |
MS.gene06630.t1 | AT4G24150 | 36.170 | 188 | 64 | 5 | 102 | 242 | 128 | 306 | 1.43e-25 | 110 |
MS.gene06630.t1 | AT2G06200 | 42.759 | 145 | 48 | 5 | 102 | 216 | 23 | 162 | 1.92e-25 | 106 |
MS.gene06630.t1 | AT2G06200 | 46.610 | 118 | 34 | 3 | 128 | 216 | 6 | 123 | 2.79e-25 | 105 |
MS.gene06630.t1 | AT2G45480 | 44.444 | 108 | 42 | 2 | 126 | 215 | 22 | 129 | 8.16e-19 | 87.8 |
MS.gene06630.t1 | AT2G45480 | 44.444 | 108 | 42 | 2 | 126 | 215 | 22 | 129 | 4.99e-18 | 87.0 |
MS.gene06630.t1 | AT2G45480 | 50.000 | 74 | 32 | 3 | 154 | 227 | 289 | 357 | 2.48e-13 | 72.8 |
MS.gene06630.t1 | AT2G45480 | 44.444 | 108 | 42 | 2 | 126 | 215 | 20 | 127 | 5.15e-18 | 87.0 |
MS.gene06630.t1 | AT2G45480 | 50.000 | 74 | 32 | 3 | 154 | 227 | 287 | 355 | 2.74e-13 | 72.4 |
MS.gene06630.t1 | AT2G06200 | 72.727 | 44 | 10 | 1 | 175 | 216 | 8 | 51 | 7.21e-16 | 76.3 |
Find 127 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATGAAAAGGTTGAAAATTTA+AGG | 0.123717 | 3.3:-77129420 | None:intergenic |
TAAACACAAACTAACCTTTA+AGG | 0.146408 | 3.3:-77129466 | None:intergenic |
GCTTCCAACACAACCCTTAA+AGG | 0.155280 | 3.3:+77129452 | MS.gene06630:CDS |
TCCCTTGGTGCTTCTAATTC+AGG | 0.206328 | 3.3:+77130821 | MS.gene06630:CDS |
CTTTCACAGTACTTGTTATT+AGG | 0.229946 | 3.3:-77130105 | None:intergenic |
GTCGAATCCATTGGCACTTC+AGG | 0.255897 | 3.3:+77131382 | MS.gene06630:CDS |
AATCCAACTACAAGAAAATA+TGG | 0.279540 | 3.3:+77130282 | MS.gene06630:CDS |
TTAGAAGCACCAAGGGAAAT+TGG | 0.300986 | 3.3:-77130815 | None:intergenic |
ACAACATACAACATGTCTTT+TGG | 0.304915 | 3.3:+77129344 | MS.gene06630:CDS |
GCCTTTGATGATGCAACATT+TGG | 0.307985 | 3.3:-77131487 | None:intergenic |
AACCTCTTGGTTTCTCAGAT+TGG | 0.311180 | 3.3:-77131021 | None:intergenic |
TATGATTTACAAGTACTTGA+TGG | 0.325776 | 3.3:+77129687 | MS.gene06630:CDS |
TCAATCTGAGGCTATCAAAT+AGG | 0.341073 | 3.3:+77130007 | MS.gene06630:CDS |
GTGGAAATGAATTCAGATAC+TGG | 0.360987 | 3.3:-77130916 | None:intergenic |
AAACACAAACTAACCTTTAA+GGG | 0.361293 | 3.3:-77129465 | None:intergenic |
ACTACTAGTGTTATTGTTGT+TGG | 0.363306 | 3.3:-77129174 | None:intergenic |
GGAGGTGATTCTTCTGCTCT+AGG | 0.365862 | 3.3:+77129365 | MS.gene06630:CDS |
TTCCACAGGCTTTCTTGAAC+GGG | 0.370446 | 3.3:-77130148 | None:intergenic |
GTCCACTAGCTGAAGTTCTA+AGG | 0.379508 | 3.3:+77131287 | MS.gene06630:CDS |
ATGATTAAACTTATTGAGTA+AGG | 0.386331 | 3.3:-77131524 | None:intergenic |
GCTAATGCTATCATTGATAA+TGG | 0.393717 | 3.3:+77129389 | MS.gene06630:CDS |
ATGGCGGCTTCAATAGGAAT+AGG | 0.401179 | 3.3:+77129616 | MS.gene06630:CDS |
GCTGTTGATGCTGATGGTTA+TGG | 0.403679 | 3.3:+77129317 | MS.gene06630:CDS |
TTCATCACTTGATCTATCAA+TGG | 0.407184 | 3.3:+77131147 | MS.gene06630:CDS |
GGATTCAGTGTTATTATGAT+AGG | 0.409147 | 3.3:-77130894 | None:intergenic |
ATAGTCATCATCAAATCAAA+AGG | 0.419333 | 3.3:+77130199 | MS.gene06630:CDS |
TTTGCATAATACCAGCTTTG+AGG | 0.422274 | 3.3:+77130365 | MS.gene06630:CDS |
CTTCTGCACCTACCAGCCTC+TGG | 0.433695 | 3.3:-77130042 | None:intergenic |
GGTGGAATGGCGGCTTCAAT+AGG | 0.433909 | 3.3:+77129610 | MS.gene06630:CDS |
GAAAATGAAGATTGGAGATA+AGG | 0.436913 | 3.3:-77130342 | None:intergenic |
CTCCTTTCACAATTGCTCAA+TGG | 0.446940 | 3.3:+77129644 | MS.gene06630:CDS |
GGATTAAGTAAGAGAGGAAA+GGG | 0.448727 | 3.3:-77130974 | None:intergenic |
TCTGCTGCTGTTGATGCTGA+TGG | 0.451525 | 3.3:+77129311 | MS.gene06630:CDS |
GAAGCAGAAATGTTATGAAA+AGG | 0.454915 | 3.3:-77129434 | None:intergenic |
CTGATGCATAACAACAAACT+TGG | 0.457493 | 3.3:+77130854 | MS.gene06630:CDS |
TGTGAGAGGTGAAGATGGAT+TGG | 0.458854 | 3.3:-77131347 | None:intergenic |
GGCTCAATCCAGCACAACCT+TGG | 0.462541 | 3.3:+77131245 | MS.gene06630:CDS |
TATGCAAAGAAAATGAAGAT+TGG | 0.463196 | 3.3:-77130350 | None:intergenic |
GAAAGAAGATGAGAAGGAAC+AGG | 0.467897 | 3.3:-77129718 | None:intergenic |
TCATCACTTGATCTATCAAT+GGG | 0.468999 | 3.3:+77131148 | MS.gene06630:CDS |
TCCATTGGCACTTCAGGGAC+AGG | 0.476778 | 3.3:+77131388 | MS.gene06630:CDS |
AAGATTGGAGATAAGGATGA+AGG | 0.477847 | 3.3:-77130335 | None:intergenic |
CTAAAATAGCATTCTCAAGT+TGG | 0.478113 | 3.3:+77131224 | MS.gene06630:CDS |
AATAACACTAGTAGTGTTGT+TGG | 0.478175 | 3.3:+77129182 | MS.gene06630:CDS |
CTGATAGAAGTAACATTGCT+TGG | 0.478243 | 3.3:-77131310 | None:intergenic |
TGATGCAGAACCATTGTTAG+AGG | 0.478713 | 3.3:-77131107 | None:intergenic |
CTAACCTTTAAGGGTTGTGT+TGG | 0.481457 | 3.3:-77129456 | None:intergenic |
GGAACAGCCACAGTAAAATC+AGG | 0.486638 | 3.3:-77130255 | None:intergenic |
GTTAGAGGTGGTGGTGGTGT+TGG | 0.487688 | 3.3:-77131092 | None:intergenic |
GCTCAATCCAGCACAACCTT+GGG | 0.488726 | 3.3:+77131246 | MS.gene06630:CDS |
CTTATTTGAAGCCTCAAAGC+TGG | 0.489494 | 3.3:-77130376 | None:intergenic |
AGTTCAGAACTGTTATATAG+TGG | 0.490372 | 3.3:-77130935 | None:intergenic |
TGATAGATCAAGTGATGAAA+GGG | 0.490826 | 3.3:-77131143 | None:intergenic |
TCAATGAAACTAAAACCTCT+TGG | 0.493104 | 3.3:-77131034 | None:intergenic |
GAGATAAGGATGAAGGGGAG+TGG | 0.496353 | 3.3:-77130328 | None:intergenic |
AGATTGGAGATAAGGATGAA+GGG | 0.498515 | 3.3:-77130334 | None:intergenic |
TTATTTGTGTGAAGTTCCAC+AGG | 0.498667 | 3.3:-77130162 | None:intergenic |
TCGAATCCATTGGCACTTCA+GGG | 0.500942 | 3.3:+77131383 | MS.gene06630:CDS |
GTTCCACAGGCTTTCTTGAA+CGG | 0.508728 | 3.3:-77130149 | None:intergenic |
TTTCTTGTAGTTGGATTAGG+AGG | 0.509981 | 3.3:-77130276 | None:intergenic |
GGCTTGGAGTGGATGCTGAA+TGG | 0.510711 | 3.3:+77130788 | MS.gene06630:CDS |
GATTGGAGATAAGGATGAAG+GGG | 0.516351 | 3.3:-77130333 | None:intergenic |
GAACCTACCCAAGGTTGTGC+TGG | 0.517275 | 3.3:-77131253 | None:intergenic |
GTTGTTGTGAGAGGTGAAGA+TGG | 0.520978 | 3.3:-77131352 | None:intergenic |
TGGCGGCTTCAATAGGAATA+GGG | 0.523564 | 3.3:+77129617 | MS.gene06630:CDS |
TCCTGTCCCTGAAGTGCCAA+TGG | 0.523915 | 3.3:-77131389 | None:intergenic |
TCAGATTGGAGAGTTTGCAT+TGG | 0.524106 | 3.3:-77131007 | None:intergenic |
GAATTGAATGAAAAGGGGCT+TGG | 0.524945 | 3.3:+77130772 | MS.gene06630:intron |
CACTAGTAGTGTTGTTGGGT+CGG | 0.525074 | 3.3:+77129187 | MS.gene06630:CDS |
GGGATTAAGTAAGAGAGGAA+AGG | 0.533228 | 3.3:-77130975 | None:intergenic |
GGCCTTAGAACTTCAGCTAG+TGG | 0.534033 | 3.3:-77131289 | None:intergenic |
AACAATGGTTCTGCATCAGT+TGG | 0.535101 | 3.3:+77131112 | MS.gene06630:CDS |
TTGATAGATCAAGTGATGAA+AGG | 0.535432 | 3.3:-77131144 | None:intergenic |
AATGGAGATCCAATTTCCCT+TGG | 0.538520 | 3.3:+77130806 | MS.gene06630:CDS |
CTCCATTGAGCAATTGTGAA+AGG | 0.540021 | 3.3:-77129646 | None:intergenic |
GGAATGGTATCATCTCCATC+TGG | 0.544391 | 3.3:+77131409 | MS.gene06630:CDS |
ATTATGATAGGAACTTCCAT+TGG | 0.546307 | 3.3:-77130882 | None:intergenic |
AAAAGACATGTTGTATGTTG+TGG | 0.549202 | 3.3:-77129342 | None:intergenic |
ATACATGAAAGAAGATGAGA+AGG | 0.554354 | 3.3:-77129724 | None:intergenic |
GGTGGTCACAGCAGGTGGAA+TGG | 0.556637 | 3.3:+77129597 | MS.gene06630:intron |
TTATTATGCAAAACACCAGA+TGG | 0.559997 | 3.3:-77131424 | None:intergenic |
AGAACCATTGTTAGAGGTGG+TGG | 0.561616 | 3.3:-77131101 | None:intergenic |
AAAGACATGTTGTATGTTGT+GGG | 0.561732 | 3.3:-77129341 | None:intergenic |
AACAATACTGATCCAGAGGC+TGG | 0.566845 | 3.3:+77130030 | MS.gene06630:CDS |
TGAGTTTCGCGTTCAAGACA+AGG | 0.567509 | 3.3:+77129136 | MS.gene06630:CDS |
ACAAATCGTGTCGAATCCAT+TGG | 0.573702 | 3.3:+77131373 | MS.gene06630:CDS |
GTTTGTTGTTATGCATCAGA+GGG | 0.575473 | 3.3:-77130850 | None:intergenic |
ATAACACTAGTAGTGTTGTT+GGG | 0.575929 | 3.3:+77129183 | MS.gene06630:CDS |
ACCACCACCACCTCTAACAA+TGG | 0.576702 | 3.3:+77131097 | MS.gene06630:CDS |
AACAAACTTGGAATGACCAA+TGG | 0.577256 | 3.3:+77130866 | MS.gene06630:CDS |
TAGTCATCATCAAATCAAAA+GGG | 0.580379 | 3.3:+77130200 | MS.gene06630:CDS |
CATGATTATCAAAGAATGAA+CGG | 0.581245 | 3.3:-77129274 | None:intergenic |
AGTTTGTTGTTATGCATCAG+AGG | 0.584443 | 3.3:-77130851 | None:intergenic |
TCCTGAATTAGAAGCACCAA+GGG | 0.587527 | 3.3:-77130822 | None:intergenic |
GAGTTTGCATTGGAACAACA+AGG | 0.591725 | 3.3:-77130997 | None:intergenic |
TCCAAATGTTGCATCATCAA+AGG | 0.591993 | 3.3:+77131486 | MS.gene06630:CDS |
ATACTGATCCAGAGGCTGGT+AGG | 0.593096 | 3.3:+77130034 | MS.gene06630:CDS |
ACACGATTTGTTGTTGTGAG+AGG | 0.596043 | 3.3:-77131361 | None:intergenic |
ACCATTGTTAGAGGTGGTGG+TGG | 0.596600 | 3.3:-77131098 | None:intergenic |
TTGGTGCTTCTAATTCAGGA+TGG | 0.601100 | 3.3:+77130825 | MS.gene06630:CDS |
TGGAAATGAATTCAGATACT+GGG | 0.603286 | 3.3:-77130915 | None:intergenic |
ACAAGGGGATTAAGTAAGAG+AGG | 0.605379 | 3.3:-77130980 | None:intergenic |
GTTTGCATTGGAACAACAAG+GGG | 0.608134 | 3.3:-77130995 | None:intergenic |
CCTTGGGTAGGTTCAACACC+TGG | 0.615728 | 3.3:+77131262 | MS.gene06630:CDS |
TGGATGGTGGTTTCAATCTG+AGG | 0.616315 | 3.3:+77129995 | MS.gene06630:CDS |
TCCCCGTTCAAGAAAGCCTG+TGG | 0.619148 | 3.3:+77130146 | MS.gene06630:CDS |
GGTAGGTGCAGAAGAACAGA+TGG | 0.619651 | 3.3:+77130051 | MS.gene06630:CDS |
GGTCACAGCAGGTGGAATGG+CGG | 0.620189 | 3.3:+77129600 | MS.gene06630:intron |
CTCCAATCTGAGAAACCAAG+AGG | 0.625201 | 3.3:+77131019 | MS.gene06630:CDS |
GAATGAAAAGGGGCTTGGAG+TGG | 0.630089 | 3.3:+77130777 | MS.gene06630:intron |
TGGCACTTCAGGGACAGGAA+TGG | 0.631431 | 3.3:+77131393 | MS.gene06630:CDS |
ACTTCAGCTAGTGGACCACC+AGG | 0.635831 | 3.3:-77131280 | None:intergenic |
TCCACAGGCTTTCTTGAACG+GGG | 0.635923 | 3.3:-77130147 | None:intergenic |
AGGCTTCAAATAAGCAACCA+AGG | 0.637520 | 3.3:+77130385 | MS.gene06630:CDS |
TAGGAACAATACTGATCCAG+AGG | 0.641405 | 3.3:+77130026 | MS.gene06630:CDS |
CATTGAGCAATTGTGAAAGG+AGG | 0.644246 | 3.3:-77129643 | None:intergenic |
AATCCAGCACAACCTTGGGT+AGG | 0.661395 | 3.3:+77131250 | MS.gene06630:CDS |
AGTTTGCATTGGAACAACAA+GGG | 0.661506 | 3.3:-77130996 | None:intergenic |
CCAGGTGTTGAACCTACCCA+AGG | 0.666817 | 3.3:-77131262 | None:intergenic |
ATCCTGAATTAGAAGCACCA+AGG | 0.673204 | 3.3:-77130823 | None:intergenic |
TGCAGAACCATTGTTAGAGG+TGG | 0.676501 | 3.3:-77131104 | None:intergenic |
TCACTTGATCTATCAATGGG+AGG | 0.680795 | 3.3:+77131151 | MS.gene06630:CDS |
TTGGTCTAATGCAGAGACAG+TGG | 0.682367 | 3.3:+77131060 | MS.gene06630:CDS |
TGGGTAGGTTCAACACCTGG+TGG | 0.687244 | 3.3:+77131265 | MS.gene06630:CDS |
TGTGAAAGACATATGCATAG+AGG | 0.723539 | 3.3:+77130120 | MS.gene06630:CDS |
GATTATCAAAGAATGAACGG+TGG | 0.727234 | 3.3:-77129271 | None:intergenic |
AATGCTATCATTGATAATGG+CGG | 0.749635 | 3.3:+77129392 | MS.gene06630:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TGAAAATATGAAATTAATTA+AGG | - | chr3.3:77129779-77129798 | None:intergenic | 10.0% |
!! | ATATATAGAAAAATAAGTAG+TGG | + | chr3.3:77129506-77129525 | MS.gene06630:intron | 15.0% |
!!! | AAAAAAAATCAAGCTTTATT+TGG | - | chr3.3:77130665-77130684 | None:intergenic | 15.0% |
!!! | TAAATAAATGCATTGTTTTA+TGG | + | chr3.3:77130707-77130726 | MS.gene06630:intron | 15.0% |
!! | AAAAAAGCAGAAAAAGTTAA+TGG | - | chr3.3:77129828-77129847 | None:intergenic | 20.0% |
!! | AAAAAGCAGAAAAAGTTAAT+GGG | - | chr3.3:77129827-77129846 | None:intergenic | 20.0% |
!! | ATGAAAAGGTTGAAAATTTA+AGG | - | chr3.3:77129423-77129442 | None:intergenic | 20.0% |
!! | ATGATTAAACTTATTGAGTA+AGG | - | chr3.3:77131527-77131546 | None:intergenic | 20.0% |
!!! | TTTCATGTTTTGTTTTGATT+TGG | + | chr3.3:77130629-77130648 | MS.gene06630:intron | 20.0% |
!!! | TTTCTAGTTTGTTATTGATT+TGG | + | chr3.3:77130748-77130767 | MS.gene06630:intron | 20.0% |
! | AAACACAAACTAACCTTTAA+GGG | - | chr3.3:77129468-77129487 | None:intergenic | 25.0% |
! | AAGGTAAATAGAATGAAAAG+TGG | - | chr3.3:77129884-77129903 | None:intergenic | 25.0% |
! | AATCCAACTACAAGAAAATA+TGG | + | chr3.3:77130282-77130301 | MS.gene06630:CDS | 25.0% |
! | ACAAAACATGAAAGTGAATA+AGG | - | chr3.3:77130622-77130641 | None:intergenic | 25.0% |
! | ATAGTCATCATCAAATCAAA+AGG | + | chr3.3:77130199-77130218 | MS.gene06630:CDS | 25.0% |
! | ATATTGAGTTTGACTAAATC+AGG | + | chr3.3:77130461-77130480 | MS.gene06630:intron | 25.0% |
! | CATGATTATCAAAGAATGAA+CGG | - | chr3.3:77129277-77129296 | None:intergenic | 25.0% |
! | TAAACACAAACTAACCTTTA+AGG | - | chr3.3:77129469-77129488 | None:intergenic | 25.0% |
! | TAGTCATCATCAAATCAAAA+GGG | + | chr3.3:77130200-77130219 | MS.gene06630:CDS | 25.0% |
! | TATGATTTACAAGTACTTGA+TGG | + | chr3.3:77129687-77129706 | MS.gene06630:CDS | 25.0% |
! | TATGCAAAGAAAATGAAGAT+TGG | - | chr3.3:77130353-77130372 | None:intergenic | 25.0% |
! | TTTAAGAGTGAATTTCATAG+AGG | - | chr3.3:77130691-77130710 | None:intergenic | 25.0% |
! | TTTGGTGAATTGAATGAAAA+GGG | + | chr3.3:77130766-77130785 | MS.gene06630:intron | 25.0% |
!! | ATTTGGTGAATTGAATGAAA+AGG | + | chr3.3:77130765-77130784 | MS.gene06630:intron | 25.0% |
!! | TATTTTCTTGTAGTTGGATT+AGG | - | chr3.3:77130282-77130301 | None:intergenic | 25.0% |
!!! | GTTTTATGGTGTTAGTATTA+TGG | + | chr3.3:77130721-77130740 | MS.gene06630:intron | 25.0% |
!!! | TACAAACTTTTGACTCAAAA+TGG | - | chr3.3:77129855-77129874 | None:intergenic | 25.0% |
!!! | TGTCTTTGTTTGTTTTGATT+TGG | + | chr3.3:77130591-77130610 | MS.gene06630:intron | 25.0% |
!!! | TTGTTGTTGGTTTTTTTTGT+AGG | - | chr3.3:77129164-77129183 | None:intergenic | 25.0% |
AAAAGACATGTTGTATGTTG+TGG | - | chr3.3:77129345-77129364 | None:intergenic | 30.0% | |
AAAGACATGTTGTATGTTGT+GGG | - | chr3.3:77129344-77129363 | None:intergenic | 30.0% | |
AAAGCAACACATGATGAAAA+AGG | - | chr3.3:77129929-77129948 | None:intergenic | 30.0% | |
AATAACACTAGTAGTGTTGT+TGG | + | chr3.3:77129182-77129201 | MS.gene06630:CDS | 30.0% | |
ACAAAGACATAGTACATGTT+TGG | - | chr3.3:77130580-77130599 | None:intergenic | 30.0% | |
AGTTCAGAACTGTTATATAG+TGG | - | chr3.3:77130938-77130957 | None:intergenic | 30.0% | |
ATACAGATATAAACTCACCT+TGG | - | chr3.3:77130405-77130424 | None:intergenic | 30.0% | |
ATACATGAAAGAAGATGAGA+AGG | - | chr3.3:77129727-77129746 | None:intergenic | 30.0% | |
ATTAAGGAAGAAGAGAGAAA+AGG | - | chr3.3:77129763-77129782 | None:intergenic | 30.0% | |
ATTATGATAGGAACTTCCAT+TGG | - | chr3.3:77130885-77130904 | None:intergenic | 30.0% | |
CTAAAATAGCATTCTCAAGT+TGG | + | chr3.3:77131224-77131243 | MS.gene06630:CDS | 30.0% | |
GAAAATGAAGATTGGAGATA+AGG | - | chr3.3:77130345-77130364 | None:intergenic | 30.0% | |
GAAGAACAGATGGTAAAAAA+TGG | + | chr3.3:77130061-77130080 | MS.gene06630:CDS | 30.0% | |
GAAGCAGAAATGTTATGAAA+AGG | - | chr3.3:77129437-77129456 | None:intergenic | 30.0% | |
GCTAATGCTATCATTGATAA+TGG | + | chr3.3:77129389-77129408 | MS.gene06630:CDS | 30.0% | |
TCAATGAAACTAAAACCTCT+TGG | - | chr3.3:77131037-77131056 | None:intergenic | 30.0% | |
TCATCACTTGATCTATCAAT+GGG | + | chr3.3:77131148-77131167 | MS.gene06630:CDS | 30.0% | |
TGATAGATCAAGTGATGAAA+GGG | - | chr3.3:77131146-77131165 | None:intergenic | 30.0% | |
TGGAAATGAATTCAGATACT+GGG | - | chr3.3:77130918-77130937 | None:intergenic | 30.0% | |
TTAAGGAAGAAGAGAGAAAA+GGG | - | chr3.3:77129762-77129781 | None:intergenic | 30.0% | |
TTATTATGCAAAACACCAGA+TGG | - | chr3.3:77131427-77131446 | None:intergenic | 30.0% | |
TTCATCACTTGATCTATCAA+TGG | + | chr3.3:77131147-77131166 | MS.gene06630:CDS | 30.0% | |
TTGATAGATCAAGTGATGAA+AGG | - | chr3.3:77131147-77131166 | None:intergenic | 30.0% | |
TTGGTGAATTGAATGAAAAG+GGG | + | chr3.3:77130767-77130786 | MS.gene06630:intron | 30.0% | |
TTTGTCATTGAATCAATGTG+TGG | + | chr3.3:77129903-77129922 | MS.gene06630:intron | 30.0% | |
! | ACAACATACAACATGTCTTT+TGG | + | chr3.3:77129344-77129363 | MS.gene06630:CDS | 30.0% |
! | ACTACTAGTGTTATTGTTGT+TGG | - | chr3.3:77129177-77129196 | None:intergenic | 30.0% |
! | ATAACACTAGTAGTGTTGTT+GGG | + | chr3.3:77129183-77129202 | MS.gene06630:CDS | 30.0% |
! | GATCCATATTTTCTTGTAGT+TGG | - | chr3.3:77130288-77130307 | None:intergenic | 30.0% |
! | GGATTCAGTGTTATTATGAT+AGG | - | chr3.3:77130897-77130916 | None:intergenic | 30.0% |
! | TGATTTTGTTGAATCCCTTA+AGG | + | chr3.3:77130493-77130512 | MS.gene06630:intron | 30.0% |
!! | AATGCTATCATTGATAATGG+CGG | + | chr3.3:77129392-77129411 | MS.gene06630:CDS | 30.0% |
!! | CACATTGATTCAATGACAAA+AGG | - | chr3.3:77129903-77129922 | None:intergenic | 30.0% |
!! | CTTTCACAGTACTTGTTATT+AGG | - | chr3.3:77130108-77130127 | None:intergenic | 30.0% |
!!! | ACTTGTGTTTTTTGTGTTTG+TGG | + | chr3.3:77129576-77129595 | MS.gene06630:intron | 30.0% |
!!! | GTTTTAGTTTCATTGATGCT+TGG | + | chr3.3:77131041-77131060 | MS.gene06630:CDS | 30.0% |
AACAAACTTGGAATGACCAA+TGG | + | chr3.3:77130866-77130885 | MS.gene06630:CDS | 35.0% | |
AAGATTGGAGATAAGGATGA+AGG | - | chr3.3:77130338-77130357 | None:intergenic | 35.0% | |
AGATTGGAGATAAGGATGAA+GGG | - | chr3.3:77130337-77130356 | None:intergenic | 35.0% | |
AGTTTGCATTGGAACAACAA+GGG | - | chr3.3:77130999-77131018 | None:intergenic | 35.0% | |
CTGATAGAAGTAACATTGCT+TGG | - | chr3.3:77131313-77131332 | None:intergenic | 35.0% | |
CTGATGCATAACAACAAACT+TGG | + | chr3.3:77130854-77130873 | MS.gene06630:CDS | 35.0% | |
GATTATCAAAGAATGAACGG+TGG | - | chr3.3:77129274-77129293 | None:intergenic | 35.0% | |
GGATTAAGTAAGAGAGGAAA+GGG | - | chr3.3:77130977-77130996 | None:intergenic | 35.0% | |
GGGATTCAACAAAATCACAA+TGG | - | chr3.3:77130490-77130509 | None:intergenic | 35.0% | |
GTGGAAATGAATTCAGATAC+TGG | - | chr3.3:77130919-77130938 | None:intergenic | 35.0% | |
TCCAAATGTTGCATCATCAA+AGG | + | chr3.3:77131486-77131505 | MS.gene06630:CDS | 35.0% | |
TGTGAAAGACATATGCATAG+AGG | + | chr3.3:77130120-77130139 | MS.gene06630:CDS | 35.0% | |
TTATTTGTGTGAAGTTCCAC+AGG | - | chr3.3:77130165-77130184 | None:intergenic | 35.0% | |
TTTGCATAATACCAGCTTTG+AGG | + | chr3.3:77130365-77130384 | MS.gene06630:CDS | 35.0% | |
! | ACATACAACATGTCTTTTGG+AGG | + | chr3.3:77129347-77129366 | MS.gene06630:CDS | 35.0% |
! | GCTTCATTTTCTGATAGTAG+TGG | + | chr3.3:77131454-77131473 | MS.gene06630:CDS | 35.0% |
! | TCAATCTGAGGCTATCAAAT+AGG | + | chr3.3:77130007-77130026 | MS.gene06630:CDS | 35.0% |
! | TTTCTTGTAGTTGGATTAGG+AGG | - | chr3.3:77130279-77130298 | None:intergenic | 35.0% |
!! | AGTTTGTTGTTATGCATCAG+AGG | - | chr3.3:77130854-77130873 | None:intergenic | 35.0% |
!! | GTTTGTTGTTATGCATCAGA+GGG | - | chr3.3:77130853-77130872 | None:intergenic | 35.0% |
!!! | TATCCTTGTTTTTGAAGCAG+TGG | + | chr3.3:77129975-77129994 | MS.gene06630:intron | 35.0% |
!!! | TGTGTTTTTTGTGTTTGTGG+TGG | + | chr3.3:77129579-77129598 | MS.gene06630:intron | 35.0% |
AACCTCTTGGTTTCTCAGAT+TGG | - | chr3.3:77131024-77131043 | None:intergenic | 40.0% | |
AATGGAGATCCAATTTCCCT+TGG | + | chr3.3:77130806-77130825 | MS.gene06630:CDS | 40.0% | |
ACAAATCGTGTCGAATCCAT+TGG | + | chr3.3:77131373-77131392 | MS.gene06630:CDS | 40.0% | |
ACAAGGGGATTAAGTAAGAG+AGG | - | chr3.3:77130983-77131002 | None:intergenic | 40.0% | |
AGGCTTCAAATAAGCAACCA+AGG | + | chr3.3:77130385-77130404 | MS.gene06630:CDS | 40.0% | |
CATCCACTGCTTCAAAAACA+AGG | - | chr3.3:77129981-77130000 | None:intergenic | 40.0% | |
CATTGAGCAATTGTGAAAGG+AGG | - | chr3.3:77129646-77129665 | None:intergenic | 40.0% | |
CTCCATTGAGCAATTGTGAA+AGG | - | chr3.3:77129649-77129668 | None:intergenic | 40.0% | |
CTCCTTTCACAATTGCTCAA+TGG | + | chr3.3:77129644-77129663 | MS.gene06630:CDS | 40.0% | |
GAAAGAAGATGAGAAGGAAC+AGG | - | chr3.3:77129721-77129740 | None:intergenic | 40.0% | |
GAATTGAATGAAAAGGGGCT+TGG | + | chr3.3:77130772-77130791 | MS.gene06630:intron | 40.0% | |
GAGTTTGCATTGGAACAACA+AGG | - | chr3.3:77131000-77131019 | None:intergenic | 40.0% | |
GATTGGAGATAAGGATGAAG+GGG | - | chr3.3:77130336-77130355 | None:intergenic | 40.0% | |
GGGATTAAGTAAGAGAGGAA+AGG | - | chr3.3:77130978-77130997 | None:intergenic | 40.0% | |
GTTTGCATTGGAACAACAAG+GGG | - | chr3.3:77130998-77131017 | None:intergenic | 40.0% | |
TAGGAACAATACTGATCCAG+AGG | + | chr3.3:77130026-77130045 | MS.gene06630:CDS | 40.0% | |
TCACTTGATCTATCAATGGG+AGG | + | chr3.3:77131151-77131170 | MS.gene06630:CDS | 40.0% | |
TCAGAAGATCCAAGCCTTAA+GGG | - | chr3.3:77130510-77130529 | None:intergenic | 40.0% | |
TCAGATTGGAGAGTTTGCAT+TGG | - | chr3.3:77131010-77131029 | None:intergenic | 40.0% | |
TGATGCAGAACCATTGTTAG+AGG | - | chr3.3:77131110-77131129 | None:intergenic | 40.0% | |
TTGTTGAATCCCTTAAGGCT+TGG | + | chr3.3:77130498-77130517 | MS.gene06630:intron | 40.0% | |
! | AACAATGGTTCTGCATCAGT+TGG | + | chr3.3:77131112-77131131 | MS.gene06630:CDS | 40.0% |
! | CTAACCTTTAAGGGTTGTGT+TGG | - | chr3.3:77129459-77129478 | None:intergenic | 40.0% |
! | CTTATTTGAAGCCTCAAAGC+TGG | - | chr3.3:77130379-77130398 | None:intergenic | 40.0% |
! | TTCTCTGCCTGATTTTACTG+TGG | + | chr3.3:77130248-77130267 | MS.gene06630:CDS | 40.0% |
! | TTGGTGCTTCTAATTCAGGA+TGG | + | chr3.3:77130825-77130844 | MS.gene06630:CDS | 40.0% |
!! | ACACGATTTGTTGTTGTGAG+AGG | - | chr3.3:77131364-77131383 | None:intergenic | 40.0% |
!! | ATCCTGAATTAGAAGCACCA+AGG | - | chr3.3:77130826-77130845 | None:intergenic | 40.0% |
!! | GCCTTTGATGATGCAACATT+TGG | - | chr3.3:77131490-77131509 | None:intergenic | 40.0% |
!! | TCCTGAATTAGAAGCACCAA+GGG | - | chr3.3:77130825-77130844 | None:intergenic | 40.0% |
!! | TTAGAAGCACCAAGGGAAAT+TGG | - | chr3.3:77130818-77130837 | None:intergenic | 40.0% |
!!! | CTTGTTTTTGAAGCAGTGGA+TGG | + | chr3.3:77129979-77129998 | MS.gene06630:intron | 40.0% |
AACAATACTGATCCAGAGGC+TGG | + | chr3.3:77130030-77130049 | MS.gene06630:CDS | 45.0% | |
AGAACCATTGTTAGAGGTGG+TGG | - | chr3.3:77131104-77131123 | None:intergenic | 45.0% | |
ATGGCGGCTTCAATAGGAAT+AGG | + | chr3.3:77129616-77129635 | MS.gene06630:CDS | 45.0% | |
CTCAGAAGATCCAAGCCTTA+AGG | - | chr3.3:77130511-77130530 | None:intergenic | 45.0% | |
CTCCAATCTGAGAAACCAAG+AGG | + | chr3.3:77131019-77131038 | MS.gene06630:CDS | 45.0% | |
GCTGTTGATGCTGATGGTTA+TGG | + | chr3.3:77129317-77129336 | MS.gene06630:CDS | 45.0% | |
GCTTCCAACACAACCCTTAA+AGG | + | chr3.3:77129452-77129471 | MS.gene06630:CDS | 45.0% | |
GGAACAGCCACAGTAAAATC+AGG | - | chr3.3:77130258-77130277 | None:intergenic | 45.0% | |
GGAATGGTATCATCTCCATC+TGG | + | chr3.3:77131409-77131428 | MS.gene06630:CDS | 45.0% | |
GTCCACTAGCTGAAGTTCTA+AGG | + | chr3.3:77131287-77131306 | MS.gene06630:CDS | 45.0% | |
GTTCCACAGGCTTTCTTGAA+CGG | - | chr3.3:77130152-77130171 | None:intergenic | 45.0% | |
GTTGTTGTGAGAGGTGAAGA+TGG | - | chr3.3:77131355-77131374 | None:intergenic | 45.0% | |
TCGAATCCATTGGCACTTCA+GGG | + | chr3.3:77131383-77131402 | MS.gene06630:CDS | 45.0% | |
TGAGTTTCGCGTTCAAGACA+AGG | + | chr3.3:77129136-77129155 | MS.gene06630:CDS | 45.0% | |
TGCAGAACCATTGTTAGAGG+TGG | - | chr3.3:77131107-77131126 | None:intergenic | 45.0% | |
TGGCGGCTTCAATAGGAATA+GGG | + | chr3.3:77129617-77129636 | MS.gene06630:CDS | 45.0% | |
TGTGAGAGGTGAAGATGGAT+TGG | - | chr3.3:77131350-77131369 | None:intergenic | 45.0% | |
TTCCACAGGCTTTCTTGAAC+GGG | - | chr3.3:77130151-77130170 | None:intergenic | 45.0% | |
TTGGTCTAATGCAGAGACAG+TGG | + | chr3.3:77131060-77131079 | MS.gene06630:CDS | 45.0% | |
! | CACTAGTAGTGTTGTTGGGT+CGG | + | chr3.3:77129187-77129206 | MS.gene06630:CDS | 45.0% |
! | TGGATGGTGGTTTCAATCTG+AGG | + | chr3.3:77129995-77130014 | MS.gene06630:CDS | 45.0% |
!! | TCCCTTGGTGCTTCTAATTC+AGG | + | chr3.3:77130821-77130840 | MS.gene06630:CDS | 45.0% |
!!! | GTTTTTGAAGCAGTGGATGG+TGG | + | chr3.3:77129982-77130001 | MS.gene06630:intron | 45.0% |
AATCCAGCACAACCTTGGGT+AGG | + | chr3.3:77131250-77131269 | MS.gene06630:CDS | 50.0% | |
ACCACCACCACCTCTAACAA+TGG | + | chr3.3:77131097-77131116 | MS.gene06630:CDS | 50.0% | |
ATACTGATCCAGAGGCTGGT+AGG | + | chr3.3:77130034-77130053 | MS.gene06630:CDS | 50.0% | |
GAATGAAAAGGGGCTTGGAG+TGG | + | chr3.3:77130777-77130796 | MS.gene06630:intron | 50.0% | |
GAGATAAGGATGAAGGGGAG+TGG | - | chr3.3:77130331-77130350 | None:intergenic | 50.0% | |
GCTCAATCCAGCACAACCTT+GGG | + | chr3.3:77131246-77131265 | MS.gene06630:CDS | 50.0% | |
GGAGGTGATTCTTCTGCTCT+AGG | + | chr3.3:77129365-77129384 | MS.gene06630:CDS | 50.0% | |
GGCCTTAGAACTTCAGCTAG+TGG | - | chr3.3:77131292-77131311 | None:intergenic | 50.0% | |
GGTAGGTGCAGAAGAACAGA+TGG | + | chr3.3:77130051-77130070 | MS.gene06630:CDS | 50.0% | |
GTCGAATCCATTGGCACTTC+AGG | + | chr3.3:77131382-77131401 | MS.gene06630:CDS | 50.0% | |
TCCACAGGCTTTCTTGAACG+GGG | - | chr3.3:77130150-77130169 | None:intergenic | 50.0% | |
TCTGCTGCTGTTGATGCTGA+TGG | + | chr3.3:77129311-77129330 | MS.gene06630:CDS | 50.0% | |
! | ACCATTGTTAGAGGTGGTGG+TGG | - | chr3.3:77131101-77131120 | None:intergenic | 50.0% |
CCTTGGGTAGGTTCAACACC+TGG | + | chr3.3:77131262-77131281 | MS.gene06630:CDS | 55.0% | |
GAACCTACCCAAGGTTGTGC+TGG | - | chr3.3:77131256-77131275 | None:intergenic | 55.0% | |
GGCTCAATCCAGCACAACCT+TGG | + | chr3.3:77131245-77131264 | MS.gene06630:CDS | 55.0% | |
GGCTTGGAGTGGATGCTGAA+TGG | + | chr3.3:77130788-77130807 | MS.gene06630:CDS | 55.0% | |
GGTGGAATGGCGGCTTCAAT+AGG | + | chr3.3:77129610-77129629 | MS.gene06630:CDS | 55.0% | |
GTGTTTGTGGTGGTCACAGC+AGG | + | chr3.3:77129589-77129608 | MS.gene06630:intron | 55.0% | |
TCCATTGGCACTTCAGGGAC+AGG | + | chr3.3:77131388-77131407 | MS.gene06630:CDS | 55.0% | |
TCCCCGTTCAAGAAAGCCTG+TGG | + | chr3.3:77130146-77130165 | MS.gene06630:CDS | 55.0% | |
TGGCACTTCAGGGACAGGAA+TGG | + | chr3.3:77131393-77131412 | MS.gene06630:CDS | 55.0% | |
TGGGTAGGTTCAACACCTGG+TGG | + | chr3.3:77131265-77131284 | MS.gene06630:CDS | 55.0% | |
TTTGTGGTGGTCACAGCAGG+TGG | + | chr3.3:77129592-77129611 | MS.gene06630:intron | 55.0% | |
! | ACTTCAGCTAGTGGACCACC+AGG | - | chr3.3:77131283-77131302 | None:intergenic | 55.0% |
! | TCCTGTCCCTGAAGTGCCAA+TGG | - | chr3.3:77131392-77131411 | None:intergenic | 55.0% |
!! | CCAGGTGTTGAACCTACCCA+AGG | - | chr3.3:77131265-77131284 | None:intergenic | 55.0% |
!! | GGGTCGGTGCAGAGTTTTGA+AGG | + | chr3.3:77129203-77129222 | MS.gene06630:CDS | 55.0% |
!! | GTTAGAGGTGGTGGTGGTGT+TGG | - | chr3.3:77131095-77131114 | None:intergenic | 55.0% |
CTTCTGCACCTACCAGCCTC+TGG | - | chr3.3:77130045-77130064 | None:intergenic | 60.0% | |
GGTCACAGCAGGTGGAATGG+CGG | + | chr3.3:77129600-77129619 | MS.gene06630:intron | 60.0% | |
GGTGGTCACAGCAGGTGGAA+TGG | + | chr3.3:77129597-77129616 | MS.gene06630:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.3 | gene | 77129131 | 77131564 | 77129131 | ID=MS.gene06630 |
chr3.3 | mRNA | 77129131 | 77131564 | 77129131 | ID=MS.gene06630.t1;Parent=MS.gene06630 |
chr3.3 | exon | 77129131 | 77129473 | 77129131 | ID=MS.gene06630.t1.exon1;Parent=MS.gene06630.t1 |
chr3.3 | CDS | 77129131 | 77129473 | 77129131 | ID=cds.MS.gene06630.t1;Parent=MS.gene06630.t1 |
chr3.3 | exon | 77129608 | 77129742 | 77129608 | ID=MS.gene06630.t1.exon2;Parent=MS.gene06630.t1 |
chr3.3 | CDS | 77129608 | 77129742 | 77129608 | ID=cds.MS.gene06630.t1;Parent=MS.gene06630.t1 |
chr3.3 | exon | 77129995 | 77130406 | 77129995 | ID=MS.gene06630.t1.exon3;Parent=MS.gene06630.t1 |
chr3.3 | CDS | 77129995 | 77130406 | 77129995 | ID=cds.MS.gene06630.t1;Parent=MS.gene06630.t1 |
chr3.3 | exon | 77130787 | 77131564 | 77130787 | ID=MS.gene06630.t1.exon4;Parent=MS.gene06630.t1 |
chr3.3 | CDS | 77130787 | 77131564 | 77130787 | ID=cds.MS.gene06630.t1;Parent=MS.gene06630.t1 |
Gene Sequence |
Protein sequence |