AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene06630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06630.t1 MTR_3g092330 91.771 559 23 7 1 555 1 540 0.0 925
MS.gene06630.t1 MTR_1g017490 52.632 133 37 3 110 218 126 256 1.74e-33 135
MS.gene06630.t1 MTR_1g017490 54.331 127 28 4 116 218 3 123 5.64e-33 132
MS.gene06630.t1 MTR_0001s0490 53.153 111 35 2 128 221 25 135 3.86e-32 127
MS.gene06630.t1 MTR_5g027030 57.000 100 35 2 126 218 14 112 8.51e-30 120
MS.gene06630.t1 MTR_8g020560 49.541 109 37 2 129 219 12 120 2.27e-29 119
MS.gene06630.t1 MTR_2g041430 50.000 114 35 3 128 219 7 120 4.94e-29 118
MS.gene06630.t1 MTR_2g041430 50.000 114 35 3 128 219 7 120 5.56e-29 118
MS.gene06630.t1 MTR_2g041430 50.000 114 35 3 128 219 7 120 5.56e-29 118
MS.gene06630.t1 MTR_7g104050 44.604 139 50 3 109 225 60 193 9.89e-29 117
MS.gene06630.t1 MTR_4g125490 49.153 118 42 3 128 227 9 126 1.32e-28 118
MS.gene06630.t1 MTR_7g104050 44.604 139 50 3 109 225 60 193 1.54e-28 117
MS.gene06630.t1 MTR_8g035910 46.218 119 51 3 127 233 48 165 4.35e-23 102
MS.gene06630.t1 MTR_8g035910 56.667 60 25 1 154 212 276 335 8.48e-14 73.9
MS.gene06630.t1 MTR_8g035640 52.542 59 27 1 155 212 31 89 1.63e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06630.t1 AT4G37740 54.701 117 35 3 128 227 164 279 5.02e-33 133
MS.gene06630.t1 AT5G53660 56.140 114 46 2 126 235 57 170 1.41e-32 129
MS.gene06630.t1 AT2G22840 54.310 116 35 2 128 226 133 247 3.75e-31 127
MS.gene06630.t1 AT3G13960 51.327 113 37 2 124 218 12 124 8.05e-30 121
MS.gene06630.t1 AT4G24150 41.718 163 64 5 102 242 90 243 3.75e-29 120
MS.gene06630.t1 AT4G24150 41.718 163 64 5 102 242 128 281 7.27e-29 120
MS.gene06630.t1 AT2G36400 52.137 117 35 1 129 224 77 193 1.99e-28 117
MS.gene06630.t1 AT3G52910 49.107 112 35 1 129 218 83 194 2.90e-26 111
MS.gene06630.t1 AT4G24150 36.170 188 64 5 102 242 128 306 1.43e-25 110
MS.gene06630.t1 AT2G06200 42.759 145 48 5 102 216 23 162 1.92e-25 106
MS.gene06630.t1 AT2G06200 46.610 118 34 3 128 216 6 123 2.79e-25 105
MS.gene06630.t1 AT2G45480 44.444 108 42 2 126 215 22 129 8.16e-19 87.8
MS.gene06630.t1 AT2G45480 44.444 108 42 2 126 215 22 129 4.99e-18 87.0
MS.gene06630.t1 AT2G45480 50.000 74 32 3 154 227 289 357 2.48e-13 72.8
MS.gene06630.t1 AT2G45480 44.444 108 42 2 126 215 20 127 5.15e-18 87.0
MS.gene06630.t1 AT2G45480 50.000 74 32 3 154 227 287 355 2.74e-13 72.4
MS.gene06630.t1 AT2G06200 72.727 44 10 1 175 216 8 51 7.21e-16 76.3

Find 127 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAAAAGGTTGAAAATTTA+AGG 0.123717 3.3:-77129420 None:intergenic
TAAACACAAACTAACCTTTA+AGG 0.146408 3.3:-77129466 None:intergenic
GCTTCCAACACAACCCTTAA+AGG 0.155280 3.3:+77129452 MS.gene06630:CDS
TCCCTTGGTGCTTCTAATTC+AGG 0.206328 3.3:+77130821 MS.gene06630:CDS
CTTTCACAGTACTTGTTATT+AGG 0.229946 3.3:-77130105 None:intergenic
GTCGAATCCATTGGCACTTC+AGG 0.255897 3.3:+77131382 MS.gene06630:CDS
AATCCAACTACAAGAAAATA+TGG 0.279540 3.3:+77130282 MS.gene06630:CDS
TTAGAAGCACCAAGGGAAAT+TGG 0.300986 3.3:-77130815 None:intergenic
ACAACATACAACATGTCTTT+TGG 0.304915 3.3:+77129344 MS.gene06630:CDS
GCCTTTGATGATGCAACATT+TGG 0.307985 3.3:-77131487 None:intergenic
AACCTCTTGGTTTCTCAGAT+TGG 0.311180 3.3:-77131021 None:intergenic
TATGATTTACAAGTACTTGA+TGG 0.325776 3.3:+77129687 MS.gene06630:CDS
TCAATCTGAGGCTATCAAAT+AGG 0.341073 3.3:+77130007 MS.gene06630:CDS
GTGGAAATGAATTCAGATAC+TGG 0.360987 3.3:-77130916 None:intergenic
AAACACAAACTAACCTTTAA+GGG 0.361293 3.3:-77129465 None:intergenic
ACTACTAGTGTTATTGTTGT+TGG 0.363306 3.3:-77129174 None:intergenic
GGAGGTGATTCTTCTGCTCT+AGG 0.365862 3.3:+77129365 MS.gene06630:CDS
TTCCACAGGCTTTCTTGAAC+GGG 0.370446 3.3:-77130148 None:intergenic
GTCCACTAGCTGAAGTTCTA+AGG 0.379508 3.3:+77131287 MS.gene06630:CDS
ATGATTAAACTTATTGAGTA+AGG 0.386331 3.3:-77131524 None:intergenic
GCTAATGCTATCATTGATAA+TGG 0.393717 3.3:+77129389 MS.gene06630:CDS
ATGGCGGCTTCAATAGGAAT+AGG 0.401179 3.3:+77129616 MS.gene06630:CDS
GCTGTTGATGCTGATGGTTA+TGG 0.403679 3.3:+77129317 MS.gene06630:CDS
TTCATCACTTGATCTATCAA+TGG 0.407184 3.3:+77131147 MS.gene06630:CDS
GGATTCAGTGTTATTATGAT+AGG 0.409147 3.3:-77130894 None:intergenic
ATAGTCATCATCAAATCAAA+AGG 0.419333 3.3:+77130199 MS.gene06630:CDS
TTTGCATAATACCAGCTTTG+AGG 0.422274 3.3:+77130365 MS.gene06630:CDS
CTTCTGCACCTACCAGCCTC+TGG 0.433695 3.3:-77130042 None:intergenic
GGTGGAATGGCGGCTTCAAT+AGG 0.433909 3.3:+77129610 MS.gene06630:CDS
GAAAATGAAGATTGGAGATA+AGG 0.436913 3.3:-77130342 None:intergenic
CTCCTTTCACAATTGCTCAA+TGG 0.446940 3.3:+77129644 MS.gene06630:CDS
GGATTAAGTAAGAGAGGAAA+GGG 0.448727 3.3:-77130974 None:intergenic
TCTGCTGCTGTTGATGCTGA+TGG 0.451525 3.3:+77129311 MS.gene06630:CDS
GAAGCAGAAATGTTATGAAA+AGG 0.454915 3.3:-77129434 None:intergenic
CTGATGCATAACAACAAACT+TGG 0.457493 3.3:+77130854 MS.gene06630:CDS
TGTGAGAGGTGAAGATGGAT+TGG 0.458854 3.3:-77131347 None:intergenic
GGCTCAATCCAGCACAACCT+TGG 0.462541 3.3:+77131245 MS.gene06630:CDS
TATGCAAAGAAAATGAAGAT+TGG 0.463196 3.3:-77130350 None:intergenic
GAAAGAAGATGAGAAGGAAC+AGG 0.467897 3.3:-77129718 None:intergenic
TCATCACTTGATCTATCAAT+GGG 0.468999 3.3:+77131148 MS.gene06630:CDS
TCCATTGGCACTTCAGGGAC+AGG 0.476778 3.3:+77131388 MS.gene06630:CDS
AAGATTGGAGATAAGGATGA+AGG 0.477847 3.3:-77130335 None:intergenic
CTAAAATAGCATTCTCAAGT+TGG 0.478113 3.3:+77131224 MS.gene06630:CDS
AATAACACTAGTAGTGTTGT+TGG 0.478175 3.3:+77129182 MS.gene06630:CDS
CTGATAGAAGTAACATTGCT+TGG 0.478243 3.3:-77131310 None:intergenic
TGATGCAGAACCATTGTTAG+AGG 0.478713 3.3:-77131107 None:intergenic
CTAACCTTTAAGGGTTGTGT+TGG 0.481457 3.3:-77129456 None:intergenic
GGAACAGCCACAGTAAAATC+AGG 0.486638 3.3:-77130255 None:intergenic
GTTAGAGGTGGTGGTGGTGT+TGG 0.487688 3.3:-77131092 None:intergenic
GCTCAATCCAGCACAACCTT+GGG 0.488726 3.3:+77131246 MS.gene06630:CDS
CTTATTTGAAGCCTCAAAGC+TGG 0.489494 3.3:-77130376 None:intergenic
AGTTCAGAACTGTTATATAG+TGG 0.490372 3.3:-77130935 None:intergenic
TGATAGATCAAGTGATGAAA+GGG 0.490826 3.3:-77131143 None:intergenic
TCAATGAAACTAAAACCTCT+TGG 0.493104 3.3:-77131034 None:intergenic
GAGATAAGGATGAAGGGGAG+TGG 0.496353 3.3:-77130328 None:intergenic
AGATTGGAGATAAGGATGAA+GGG 0.498515 3.3:-77130334 None:intergenic
TTATTTGTGTGAAGTTCCAC+AGG 0.498667 3.3:-77130162 None:intergenic
TCGAATCCATTGGCACTTCA+GGG 0.500942 3.3:+77131383 MS.gene06630:CDS
GTTCCACAGGCTTTCTTGAA+CGG 0.508728 3.3:-77130149 None:intergenic
TTTCTTGTAGTTGGATTAGG+AGG 0.509981 3.3:-77130276 None:intergenic
GGCTTGGAGTGGATGCTGAA+TGG 0.510711 3.3:+77130788 MS.gene06630:CDS
GATTGGAGATAAGGATGAAG+GGG 0.516351 3.3:-77130333 None:intergenic
GAACCTACCCAAGGTTGTGC+TGG 0.517275 3.3:-77131253 None:intergenic
GTTGTTGTGAGAGGTGAAGA+TGG 0.520978 3.3:-77131352 None:intergenic
TGGCGGCTTCAATAGGAATA+GGG 0.523564 3.3:+77129617 MS.gene06630:CDS
TCCTGTCCCTGAAGTGCCAA+TGG 0.523915 3.3:-77131389 None:intergenic
TCAGATTGGAGAGTTTGCAT+TGG 0.524106 3.3:-77131007 None:intergenic
GAATTGAATGAAAAGGGGCT+TGG 0.524945 3.3:+77130772 MS.gene06630:intron
CACTAGTAGTGTTGTTGGGT+CGG 0.525074 3.3:+77129187 MS.gene06630:CDS
GGGATTAAGTAAGAGAGGAA+AGG 0.533228 3.3:-77130975 None:intergenic
GGCCTTAGAACTTCAGCTAG+TGG 0.534033 3.3:-77131289 None:intergenic
AACAATGGTTCTGCATCAGT+TGG 0.535101 3.3:+77131112 MS.gene06630:CDS
TTGATAGATCAAGTGATGAA+AGG 0.535432 3.3:-77131144 None:intergenic
AATGGAGATCCAATTTCCCT+TGG 0.538520 3.3:+77130806 MS.gene06630:CDS
CTCCATTGAGCAATTGTGAA+AGG 0.540021 3.3:-77129646 None:intergenic
GGAATGGTATCATCTCCATC+TGG 0.544391 3.3:+77131409 MS.gene06630:CDS
ATTATGATAGGAACTTCCAT+TGG 0.546307 3.3:-77130882 None:intergenic
AAAAGACATGTTGTATGTTG+TGG 0.549202 3.3:-77129342 None:intergenic
ATACATGAAAGAAGATGAGA+AGG 0.554354 3.3:-77129724 None:intergenic
GGTGGTCACAGCAGGTGGAA+TGG 0.556637 3.3:+77129597 MS.gene06630:intron
TTATTATGCAAAACACCAGA+TGG 0.559997 3.3:-77131424 None:intergenic
AGAACCATTGTTAGAGGTGG+TGG 0.561616 3.3:-77131101 None:intergenic
AAAGACATGTTGTATGTTGT+GGG 0.561732 3.3:-77129341 None:intergenic
AACAATACTGATCCAGAGGC+TGG 0.566845 3.3:+77130030 MS.gene06630:CDS
TGAGTTTCGCGTTCAAGACA+AGG 0.567509 3.3:+77129136 MS.gene06630:CDS
ACAAATCGTGTCGAATCCAT+TGG 0.573702 3.3:+77131373 MS.gene06630:CDS
GTTTGTTGTTATGCATCAGA+GGG 0.575473 3.3:-77130850 None:intergenic
ATAACACTAGTAGTGTTGTT+GGG 0.575929 3.3:+77129183 MS.gene06630:CDS
ACCACCACCACCTCTAACAA+TGG 0.576702 3.3:+77131097 MS.gene06630:CDS
AACAAACTTGGAATGACCAA+TGG 0.577256 3.3:+77130866 MS.gene06630:CDS
TAGTCATCATCAAATCAAAA+GGG 0.580379 3.3:+77130200 MS.gene06630:CDS
CATGATTATCAAAGAATGAA+CGG 0.581245 3.3:-77129274 None:intergenic
AGTTTGTTGTTATGCATCAG+AGG 0.584443 3.3:-77130851 None:intergenic
TCCTGAATTAGAAGCACCAA+GGG 0.587527 3.3:-77130822 None:intergenic
GAGTTTGCATTGGAACAACA+AGG 0.591725 3.3:-77130997 None:intergenic
TCCAAATGTTGCATCATCAA+AGG 0.591993 3.3:+77131486 MS.gene06630:CDS
ATACTGATCCAGAGGCTGGT+AGG 0.593096 3.3:+77130034 MS.gene06630:CDS
ACACGATTTGTTGTTGTGAG+AGG 0.596043 3.3:-77131361 None:intergenic
ACCATTGTTAGAGGTGGTGG+TGG 0.596600 3.3:-77131098 None:intergenic
TTGGTGCTTCTAATTCAGGA+TGG 0.601100 3.3:+77130825 MS.gene06630:CDS
TGGAAATGAATTCAGATACT+GGG 0.603286 3.3:-77130915 None:intergenic
ACAAGGGGATTAAGTAAGAG+AGG 0.605379 3.3:-77130980 None:intergenic
GTTTGCATTGGAACAACAAG+GGG 0.608134 3.3:-77130995 None:intergenic
CCTTGGGTAGGTTCAACACC+TGG 0.615728 3.3:+77131262 MS.gene06630:CDS
TGGATGGTGGTTTCAATCTG+AGG 0.616315 3.3:+77129995 MS.gene06630:CDS
TCCCCGTTCAAGAAAGCCTG+TGG 0.619148 3.3:+77130146 MS.gene06630:CDS
GGTAGGTGCAGAAGAACAGA+TGG 0.619651 3.3:+77130051 MS.gene06630:CDS
GGTCACAGCAGGTGGAATGG+CGG 0.620189 3.3:+77129600 MS.gene06630:intron
CTCCAATCTGAGAAACCAAG+AGG 0.625201 3.3:+77131019 MS.gene06630:CDS
GAATGAAAAGGGGCTTGGAG+TGG 0.630089 3.3:+77130777 MS.gene06630:intron
TGGCACTTCAGGGACAGGAA+TGG 0.631431 3.3:+77131393 MS.gene06630:CDS
ACTTCAGCTAGTGGACCACC+AGG 0.635831 3.3:-77131280 None:intergenic
TCCACAGGCTTTCTTGAACG+GGG 0.635923 3.3:-77130147 None:intergenic
AGGCTTCAAATAAGCAACCA+AGG 0.637520 3.3:+77130385 MS.gene06630:CDS
TAGGAACAATACTGATCCAG+AGG 0.641405 3.3:+77130026 MS.gene06630:CDS
CATTGAGCAATTGTGAAAGG+AGG 0.644246 3.3:-77129643 None:intergenic
AATCCAGCACAACCTTGGGT+AGG 0.661395 3.3:+77131250 MS.gene06630:CDS
AGTTTGCATTGGAACAACAA+GGG 0.661506 3.3:-77130996 None:intergenic
CCAGGTGTTGAACCTACCCA+AGG 0.666817 3.3:-77131262 None:intergenic
ATCCTGAATTAGAAGCACCA+AGG 0.673204 3.3:-77130823 None:intergenic
TGCAGAACCATTGTTAGAGG+TGG 0.676501 3.3:-77131104 None:intergenic
TCACTTGATCTATCAATGGG+AGG 0.680795 3.3:+77131151 MS.gene06630:CDS
TTGGTCTAATGCAGAGACAG+TGG 0.682367 3.3:+77131060 MS.gene06630:CDS
TGGGTAGGTTCAACACCTGG+TGG 0.687244 3.3:+77131265 MS.gene06630:CDS
TGTGAAAGACATATGCATAG+AGG 0.723539 3.3:+77130120 MS.gene06630:CDS
GATTATCAAAGAATGAACGG+TGG 0.727234 3.3:-77129271 None:intergenic
AATGCTATCATTGATAATGG+CGG 0.749635 3.3:+77129392 MS.gene06630:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAAATATGAAATTAATTA+AGG - chr3.3:77129779-77129798 None:intergenic 10.0%
!! ATATATAGAAAAATAAGTAG+TGG + chr3.3:77129506-77129525 MS.gene06630:intron 15.0%
!!! AAAAAAAATCAAGCTTTATT+TGG - chr3.3:77130665-77130684 None:intergenic 15.0%
!!! TAAATAAATGCATTGTTTTA+TGG + chr3.3:77130707-77130726 MS.gene06630:intron 15.0%
!! AAAAAAGCAGAAAAAGTTAA+TGG - chr3.3:77129828-77129847 None:intergenic 20.0%
!! AAAAAGCAGAAAAAGTTAAT+GGG - chr3.3:77129827-77129846 None:intergenic 20.0%
!! ATGAAAAGGTTGAAAATTTA+AGG - chr3.3:77129423-77129442 None:intergenic 20.0%
!! ATGATTAAACTTATTGAGTA+AGG - chr3.3:77131527-77131546 None:intergenic 20.0%
!!! TTTCATGTTTTGTTTTGATT+TGG + chr3.3:77130629-77130648 MS.gene06630:intron 20.0%
!!! TTTCTAGTTTGTTATTGATT+TGG + chr3.3:77130748-77130767 MS.gene06630:intron 20.0%
! AAACACAAACTAACCTTTAA+GGG - chr3.3:77129468-77129487 None:intergenic 25.0%
! AAGGTAAATAGAATGAAAAG+TGG - chr3.3:77129884-77129903 None:intergenic 25.0%
! AATCCAACTACAAGAAAATA+TGG + chr3.3:77130282-77130301 MS.gene06630:CDS 25.0%
! ACAAAACATGAAAGTGAATA+AGG - chr3.3:77130622-77130641 None:intergenic 25.0%
! ATAGTCATCATCAAATCAAA+AGG + chr3.3:77130199-77130218 MS.gene06630:CDS 25.0%
! ATATTGAGTTTGACTAAATC+AGG + chr3.3:77130461-77130480 MS.gene06630:intron 25.0%
! CATGATTATCAAAGAATGAA+CGG - chr3.3:77129277-77129296 None:intergenic 25.0%
! TAAACACAAACTAACCTTTA+AGG - chr3.3:77129469-77129488 None:intergenic 25.0%
! TAGTCATCATCAAATCAAAA+GGG + chr3.3:77130200-77130219 MS.gene06630:CDS 25.0%
! TATGATTTACAAGTACTTGA+TGG + chr3.3:77129687-77129706 MS.gene06630:CDS 25.0%
! TATGCAAAGAAAATGAAGAT+TGG - chr3.3:77130353-77130372 None:intergenic 25.0%
! TTTAAGAGTGAATTTCATAG+AGG - chr3.3:77130691-77130710 None:intergenic 25.0%
! TTTGGTGAATTGAATGAAAA+GGG + chr3.3:77130766-77130785 MS.gene06630:intron 25.0%
!! ATTTGGTGAATTGAATGAAA+AGG + chr3.3:77130765-77130784 MS.gene06630:intron 25.0%
!! TATTTTCTTGTAGTTGGATT+AGG - chr3.3:77130282-77130301 None:intergenic 25.0%
!!! GTTTTATGGTGTTAGTATTA+TGG + chr3.3:77130721-77130740 MS.gene06630:intron 25.0%
!!! TACAAACTTTTGACTCAAAA+TGG - chr3.3:77129855-77129874 None:intergenic 25.0%
!!! TGTCTTTGTTTGTTTTGATT+TGG + chr3.3:77130591-77130610 MS.gene06630:intron 25.0%
!!! TTGTTGTTGGTTTTTTTTGT+AGG - chr3.3:77129164-77129183 None:intergenic 25.0%
AAAAGACATGTTGTATGTTG+TGG - chr3.3:77129345-77129364 None:intergenic 30.0%
AAAGACATGTTGTATGTTGT+GGG - chr3.3:77129344-77129363 None:intergenic 30.0%
AAAGCAACACATGATGAAAA+AGG - chr3.3:77129929-77129948 None:intergenic 30.0%
AATAACACTAGTAGTGTTGT+TGG + chr3.3:77129182-77129201 MS.gene06630:CDS 30.0%
ACAAAGACATAGTACATGTT+TGG - chr3.3:77130580-77130599 None:intergenic 30.0%
AGTTCAGAACTGTTATATAG+TGG - chr3.3:77130938-77130957 None:intergenic 30.0%
ATACAGATATAAACTCACCT+TGG - chr3.3:77130405-77130424 None:intergenic 30.0%
ATACATGAAAGAAGATGAGA+AGG - chr3.3:77129727-77129746 None:intergenic 30.0%
ATTAAGGAAGAAGAGAGAAA+AGG - chr3.3:77129763-77129782 None:intergenic 30.0%
ATTATGATAGGAACTTCCAT+TGG - chr3.3:77130885-77130904 None:intergenic 30.0%
CTAAAATAGCATTCTCAAGT+TGG + chr3.3:77131224-77131243 MS.gene06630:CDS 30.0%
GAAAATGAAGATTGGAGATA+AGG - chr3.3:77130345-77130364 None:intergenic 30.0%
GAAGAACAGATGGTAAAAAA+TGG + chr3.3:77130061-77130080 MS.gene06630:CDS 30.0%
GAAGCAGAAATGTTATGAAA+AGG - chr3.3:77129437-77129456 None:intergenic 30.0%
GCTAATGCTATCATTGATAA+TGG + chr3.3:77129389-77129408 MS.gene06630:CDS 30.0%
TCAATGAAACTAAAACCTCT+TGG - chr3.3:77131037-77131056 None:intergenic 30.0%
TCATCACTTGATCTATCAAT+GGG + chr3.3:77131148-77131167 MS.gene06630:CDS 30.0%
TGATAGATCAAGTGATGAAA+GGG - chr3.3:77131146-77131165 None:intergenic 30.0%
TGGAAATGAATTCAGATACT+GGG - chr3.3:77130918-77130937 None:intergenic 30.0%
TTAAGGAAGAAGAGAGAAAA+GGG - chr3.3:77129762-77129781 None:intergenic 30.0%
TTATTATGCAAAACACCAGA+TGG - chr3.3:77131427-77131446 None:intergenic 30.0%
TTCATCACTTGATCTATCAA+TGG + chr3.3:77131147-77131166 MS.gene06630:CDS 30.0%
TTGATAGATCAAGTGATGAA+AGG - chr3.3:77131147-77131166 None:intergenic 30.0%
TTGGTGAATTGAATGAAAAG+GGG + chr3.3:77130767-77130786 MS.gene06630:intron 30.0%
TTTGTCATTGAATCAATGTG+TGG + chr3.3:77129903-77129922 MS.gene06630:intron 30.0%
! ACAACATACAACATGTCTTT+TGG + chr3.3:77129344-77129363 MS.gene06630:CDS 30.0%
! ACTACTAGTGTTATTGTTGT+TGG - chr3.3:77129177-77129196 None:intergenic 30.0%
! ATAACACTAGTAGTGTTGTT+GGG + chr3.3:77129183-77129202 MS.gene06630:CDS 30.0%
! GATCCATATTTTCTTGTAGT+TGG - chr3.3:77130288-77130307 None:intergenic 30.0%
! GGATTCAGTGTTATTATGAT+AGG - chr3.3:77130897-77130916 None:intergenic 30.0%
! TGATTTTGTTGAATCCCTTA+AGG + chr3.3:77130493-77130512 MS.gene06630:intron 30.0%
!! AATGCTATCATTGATAATGG+CGG + chr3.3:77129392-77129411 MS.gene06630:CDS 30.0%
!! CACATTGATTCAATGACAAA+AGG - chr3.3:77129903-77129922 None:intergenic 30.0%
!! CTTTCACAGTACTTGTTATT+AGG - chr3.3:77130108-77130127 None:intergenic 30.0%
!!! ACTTGTGTTTTTTGTGTTTG+TGG + chr3.3:77129576-77129595 MS.gene06630:intron 30.0%
!!! GTTTTAGTTTCATTGATGCT+TGG + chr3.3:77131041-77131060 MS.gene06630:CDS 30.0%
AACAAACTTGGAATGACCAA+TGG + chr3.3:77130866-77130885 MS.gene06630:CDS 35.0%
AAGATTGGAGATAAGGATGA+AGG - chr3.3:77130338-77130357 None:intergenic 35.0%
AGATTGGAGATAAGGATGAA+GGG - chr3.3:77130337-77130356 None:intergenic 35.0%
AGTTTGCATTGGAACAACAA+GGG - chr3.3:77130999-77131018 None:intergenic 35.0%
CTGATAGAAGTAACATTGCT+TGG - chr3.3:77131313-77131332 None:intergenic 35.0%
CTGATGCATAACAACAAACT+TGG + chr3.3:77130854-77130873 MS.gene06630:CDS 35.0%
GATTATCAAAGAATGAACGG+TGG - chr3.3:77129274-77129293 None:intergenic 35.0%
GGATTAAGTAAGAGAGGAAA+GGG - chr3.3:77130977-77130996 None:intergenic 35.0%
GGGATTCAACAAAATCACAA+TGG - chr3.3:77130490-77130509 None:intergenic 35.0%
GTGGAAATGAATTCAGATAC+TGG - chr3.3:77130919-77130938 None:intergenic 35.0%
TCCAAATGTTGCATCATCAA+AGG + chr3.3:77131486-77131505 MS.gene06630:CDS 35.0%
TGTGAAAGACATATGCATAG+AGG + chr3.3:77130120-77130139 MS.gene06630:CDS 35.0%
TTATTTGTGTGAAGTTCCAC+AGG - chr3.3:77130165-77130184 None:intergenic 35.0%
TTTGCATAATACCAGCTTTG+AGG + chr3.3:77130365-77130384 MS.gene06630:CDS 35.0%
! ACATACAACATGTCTTTTGG+AGG + chr3.3:77129347-77129366 MS.gene06630:CDS 35.0%
! GCTTCATTTTCTGATAGTAG+TGG + chr3.3:77131454-77131473 MS.gene06630:CDS 35.0%
! TCAATCTGAGGCTATCAAAT+AGG + chr3.3:77130007-77130026 MS.gene06630:CDS 35.0%
! TTTCTTGTAGTTGGATTAGG+AGG - chr3.3:77130279-77130298 None:intergenic 35.0%
!! AGTTTGTTGTTATGCATCAG+AGG - chr3.3:77130854-77130873 None:intergenic 35.0%
!! GTTTGTTGTTATGCATCAGA+GGG - chr3.3:77130853-77130872 None:intergenic 35.0%
!!! TATCCTTGTTTTTGAAGCAG+TGG + chr3.3:77129975-77129994 MS.gene06630:intron 35.0%
!!! TGTGTTTTTTGTGTTTGTGG+TGG + chr3.3:77129579-77129598 MS.gene06630:intron 35.0%
AACCTCTTGGTTTCTCAGAT+TGG - chr3.3:77131024-77131043 None:intergenic 40.0%
AATGGAGATCCAATTTCCCT+TGG + chr3.3:77130806-77130825 MS.gene06630:CDS 40.0%
ACAAATCGTGTCGAATCCAT+TGG + chr3.3:77131373-77131392 MS.gene06630:CDS 40.0%
ACAAGGGGATTAAGTAAGAG+AGG - chr3.3:77130983-77131002 None:intergenic 40.0%
AGGCTTCAAATAAGCAACCA+AGG + chr3.3:77130385-77130404 MS.gene06630:CDS 40.0%
CATCCACTGCTTCAAAAACA+AGG - chr3.3:77129981-77130000 None:intergenic 40.0%
CATTGAGCAATTGTGAAAGG+AGG - chr3.3:77129646-77129665 None:intergenic 40.0%
CTCCATTGAGCAATTGTGAA+AGG - chr3.3:77129649-77129668 None:intergenic 40.0%
CTCCTTTCACAATTGCTCAA+TGG + chr3.3:77129644-77129663 MS.gene06630:CDS 40.0%
GAAAGAAGATGAGAAGGAAC+AGG - chr3.3:77129721-77129740 None:intergenic 40.0%
GAATTGAATGAAAAGGGGCT+TGG + chr3.3:77130772-77130791 MS.gene06630:intron 40.0%
GAGTTTGCATTGGAACAACA+AGG - chr3.3:77131000-77131019 None:intergenic 40.0%
GATTGGAGATAAGGATGAAG+GGG - chr3.3:77130336-77130355 None:intergenic 40.0%
GGGATTAAGTAAGAGAGGAA+AGG - chr3.3:77130978-77130997 None:intergenic 40.0%
GTTTGCATTGGAACAACAAG+GGG - chr3.3:77130998-77131017 None:intergenic 40.0%
TAGGAACAATACTGATCCAG+AGG + chr3.3:77130026-77130045 MS.gene06630:CDS 40.0%
TCACTTGATCTATCAATGGG+AGG + chr3.3:77131151-77131170 MS.gene06630:CDS 40.0%
TCAGAAGATCCAAGCCTTAA+GGG - chr3.3:77130510-77130529 None:intergenic 40.0%
TCAGATTGGAGAGTTTGCAT+TGG - chr3.3:77131010-77131029 None:intergenic 40.0%
TGATGCAGAACCATTGTTAG+AGG - chr3.3:77131110-77131129 None:intergenic 40.0%
TTGTTGAATCCCTTAAGGCT+TGG + chr3.3:77130498-77130517 MS.gene06630:intron 40.0%
! AACAATGGTTCTGCATCAGT+TGG + chr3.3:77131112-77131131 MS.gene06630:CDS 40.0%
! CTAACCTTTAAGGGTTGTGT+TGG - chr3.3:77129459-77129478 None:intergenic 40.0%
! CTTATTTGAAGCCTCAAAGC+TGG - chr3.3:77130379-77130398 None:intergenic 40.0%
! TTCTCTGCCTGATTTTACTG+TGG + chr3.3:77130248-77130267 MS.gene06630:CDS 40.0%
! TTGGTGCTTCTAATTCAGGA+TGG + chr3.3:77130825-77130844 MS.gene06630:CDS 40.0%
!! ACACGATTTGTTGTTGTGAG+AGG - chr3.3:77131364-77131383 None:intergenic 40.0%
!! ATCCTGAATTAGAAGCACCA+AGG - chr3.3:77130826-77130845 None:intergenic 40.0%
!! GCCTTTGATGATGCAACATT+TGG - chr3.3:77131490-77131509 None:intergenic 40.0%
!! TCCTGAATTAGAAGCACCAA+GGG - chr3.3:77130825-77130844 None:intergenic 40.0%
!! TTAGAAGCACCAAGGGAAAT+TGG - chr3.3:77130818-77130837 None:intergenic 40.0%
!!! CTTGTTTTTGAAGCAGTGGA+TGG + chr3.3:77129979-77129998 MS.gene06630:intron 40.0%
AACAATACTGATCCAGAGGC+TGG + chr3.3:77130030-77130049 MS.gene06630:CDS 45.0%
AGAACCATTGTTAGAGGTGG+TGG - chr3.3:77131104-77131123 None:intergenic 45.0%
ATGGCGGCTTCAATAGGAAT+AGG + chr3.3:77129616-77129635 MS.gene06630:CDS 45.0%
CTCAGAAGATCCAAGCCTTA+AGG - chr3.3:77130511-77130530 None:intergenic 45.0%
CTCCAATCTGAGAAACCAAG+AGG + chr3.3:77131019-77131038 MS.gene06630:CDS 45.0%
GCTGTTGATGCTGATGGTTA+TGG + chr3.3:77129317-77129336 MS.gene06630:CDS 45.0%
GCTTCCAACACAACCCTTAA+AGG + chr3.3:77129452-77129471 MS.gene06630:CDS 45.0%
GGAACAGCCACAGTAAAATC+AGG - chr3.3:77130258-77130277 None:intergenic 45.0%
GGAATGGTATCATCTCCATC+TGG + chr3.3:77131409-77131428 MS.gene06630:CDS 45.0%
GTCCACTAGCTGAAGTTCTA+AGG + chr3.3:77131287-77131306 MS.gene06630:CDS 45.0%
GTTCCACAGGCTTTCTTGAA+CGG - chr3.3:77130152-77130171 None:intergenic 45.0%
GTTGTTGTGAGAGGTGAAGA+TGG - chr3.3:77131355-77131374 None:intergenic 45.0%
TCGAATCCATTGGCACTTCA+GGG + chr3.3:77131383-77131402 MS.gene06630:CDS 45.0%
TGAGTTTCGCGTTCAAGACA+AGG + chr3.3:77129136-77129155 MS.gene06630:CDS 45.0%
TGCAGAACCATTGTTAGAGG+TGG - chr3.3:77131107-77131126 None:intergenic 45.0%
TGGCGGCTTCAATAGGAATA+GGG + chr3.3:77129617-77129636 MS.gene06630:CDS 45.0%
TGTGAGAGGTGAAGATGGAT+TGG - chr3.3:77131350-77131369 None:intergenic 45.0%
TTCCACAGGCTTTCTTGAAC+GGG - chr3.3:77130151-77130170 None:intergenic 45.0%
TTGGTCTAATGCAGAGACAG+TGG + chr3.3:77131060-77131079 MS.gene06630:CDS 45.0%
! CACTAGTAGTGTTGTTGGGT+CGG + chr3.3:77129187-77129206 MS.gene06630:CDS 45.0%
! TGGATGGTGGTTTCAATCTG+AGG + chr3.3:77129995-77130014 MS.gene06630:CDS 45.0%
!! TCCCTTGGTGCTTCTAATTC+AGG + chr3.3:77130821-77130840 MS.gene06630:CDS 45.0%
!!! GTTTTTGAAGCAGTGGATGG+TGG + chr3.3:77129982-77130001 MS.gene06630:intron 45.0%
AATCCAGCACAACCTTGGGT+AGG + chr3.3:77131250-77131269 MS.gene06630:CDS 50.0%
ACCACCACCACCTCTAACAA+TGG + chr3.3:77131097-77131116 MS.gene06630:CDS 50.0%
ATACTGATCCAGAGGCTGGT+AGG + chr3.3:77130034-77130053 MS.gene06630:CDS 50.0%
GAATGAAAAGGGGCTTGGAG+TGG + chr3.3:77130777-77130796 MS.gene06630:intron 50.0%
GAGATAAGGATGAAGGGGAG+TGG - chr3.3:77130331-77130350 None:intergenic 50.0%
GCTCAATCCAGCACAACCTT+GGG + chr3.3:77131246-77131265 MS.gene06630:CDS 50.0%
GGAGGTGATTCTTCTGCTCT+AGG + chr3.3:77129365-77129384 MS.gene06630:CDS 50.0%
GGCCTTAGAACTTCAGCTAG+TGG - chr3.3:77131292-77131311 None:intergenic 50.0%
GGTAGGTGCAGAAGAACAGA+TGG + chr3.3:77130051-77130070 MS.gene06630:CDS 50.0%
GTCGAATCCATTGGCACTTC+AGG + chr3.3:77131382-77131401 MS.gene06630:CDS 50.0%
TCCACAGGCTTTCTTGAACG+GGG - chr3.3:77130150-77130169 None:intergenic 50.0%
TCTGCTGCTGTTGATGCTGA+TGG + chr3.3:77129311-77129330 MS.gene06630:CDS 50.0%
! ACCATTGTTAGAGGTGGTGG+TGG - chr3.3:77131101-77131120 None:intergenic 50.0%
CCTTGGGTAGGTTCAACACC+TGG + chr3.3:77131262-77131281 MS.gene06630:CDS 55.0%
GAACCTACCCAAGGTTGTGC+TGG - chr3.3:77131256-77131275 None:intergenic 55.0%
GGCTCAATCCAGCACAACCT+TGG + chr3.3:77131245-77131264 MS.gene06630:CDS 55.0%
GGCTTGGAGTGGATGCTGAA+TGG + chr3.3:77130788-77130807 MS.gene06630:CDS 55.0%
GGTGGAATGGCGGCTTCAAT+AGG + chr3.3:77129610-77129629 MS.gene06630:CDS 55.0%
GTGTTTGTGGTGGTCACAGC+AGG + chr3.3:77129589-77129608 MS.gene06630:intron 55.0%
TCCATTGGCACTTCAGGGAC+AGG + chr3.3:77131388-77131407 MS.gene06630:CDS 55.0%
TCCCCGTTCAAGAAAGCCTG+TGG + chr3.3:77130146-77130165 MS.gene06630:CDS 55.0%
TGGCACTTCAGGGACAGGAA+TGG + chr3.3:77131393-77131412 MS.gene06630:CDS 55.0%
TGGGTAGGTTCAACACCTGG+TGG + chr3.3:77131265-77131284 MS.gene06630:CDS 55.0%
TTTGTGGTGGTCACAGCAGG+TGG + chr3.3:77129592-77129611 MS.gene06630:intron 55.0%
! ACTTCAGCTAGTGGACCACC+AGG - chr3.3:77131283-77131302 None:intergenic 55.0%
! TCCTGTCCCTGAAGTGCCAA+TGG - chr3.3:77131392-77131411 None:intergenic 55.0%
!! CCAGGTGTTGAACCTACCCA+AGG - chr3.3:77131265-77131284 None:intergenic 55.0%
!! GGGTCGGTGCAGAGTTTTGA+AGG + chr3.3:77129203-77129222 MS.gene06630:CDS 55.0%
!! GTTAGAGGTGGTGGTGGTGT+TGG - chr3.3:77131095-77131114 None:intergenic 55.0%
CTTCTGCACCTACCAGCCTC+TGG - chr3.3:77130045-77130064 None:intergenic 60.0%
GGTCACAGCAGGTGGAATGG+CGG + chr3.3:77129600-77129619 MS.gene06630:intron 60.0%
GGTGGTCACAGCAGGTGGAA+TGG + chr3.3:77129597-77129616 MS.gene06630:intron 60.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 77129131 77131564 77129131 ID=MS.gene06630
chr3.3 mRNA 77129131 77131564 77129131 ID=MS.gene06630.t1;Parent=MS.gene06630
chr3.3 exon 77129131 77129473 77129131 ID=MS.gene06630.t1.exon1;Parent=MS.gene06630.t1
chr3.3 CDS 77129131 77129473 77129131 ID=cds.MS.gene06630.t1;Parent=MS.gene06630.t1
chr3.3 exon 77129608 77129742 77129608 ID=MS.gene06630.t1.exon2;Parent=MS.gene06630.t1
chr3.3 CDS 77129608 77129742 77129608 ID=cds.MS.gene06630.t1;Parent=MS.gene06630.t1
chr3.3 exon 77129995 77130406 77129995 ID=MS.gene06630.t1.exon3;Parent=MS.gene06630.t1
chr3.3 CDS 77129995 77130406 77129995 ID=cds.MS.gene06630.t1;Parent=MS.gene06630.t1
chr3.3 exon 77130787 77131564 77130787 ID=MS.gene06630.t1.exon4;Parent=MS.gene06630.t1
chr3.3 CDS 77130787 77131564 77130787 ID=cds.MS.gene06630.t1;Parent=MS.gene06630.t1
Gene Sequence

>MS.gene06630

ATGGGTGAGTTTCGCGTTCAAGACAAGGAACCTACAAAAAAAACCAACAACAATAACACTAGTAGTGTTGTTGGGTCGGTGCAGAGTTTTGAAGGTTTCTCTAATAAGAACATGATGATACTGCAACATCATAATCATCACCACCGTTCATTCTTTGATAATCATGATTCTTCTTCTGTTTCTGCTGCTGTTGATGCTGATGGTTATGGTCCCACAACATACAACATGTCTTTTGGAGGTGATTCTTCTGCTCTAGGTGCTAATGCTATCATTGATAATGGCGGTGTGTCCTTAAATTTTCAACCTTTTCATAACATTTCTGCTTCCAACACAACCCTTAAAGGTTAGTTTGTGTTTATTTCTTATTGTTCAATAATATATAGAAAAATAAGTAGTGGTCAGAAAGAAAAAAAGAAGTTCTGTACAAATTTCTGATTCTGAACATACTTGTGTTTTTTGTGTTTGTGGTGGTCACAGCAGGTGGAATGGCGGCTTCAATAGGAATAGGGTATCCTCCTTTCACAATTGCTCAATGGAGAGAGCTTGAAAGACAAGCTATGATTTACAAGTACTTGATGGCTTCACTTCCTGTTCCTTCTCATCTTCTTTCATGTATGATATGATATGACCCTTTTCTCTCTTCTTCCTTAATTAATTTCATATTTTCATGTACAGACAAAGAAAATAACATAGCCCATTAACTTTTTCTGCTTTTTTAAGTCCATTTTGAGTCAAAAGTTTGTATTTTTACCACTTTTCATTCTATTTACCTTTTGTCATTGAATCAATGTGTGGCCTTTTTCATCATGTGTTGCTTTCTGTTCTTACTGTTTCTTGAAATTTGTATCCTTGTTTTTGAAGCAGTGGATGGTGGTTTCAATCTGAGGCTATCAAATAGGAACAATACTGATCCAGAGGCTGGTAGGTGCAGAAGAACAGATGGTAAAAAATGGAGATGTTCAAGAGATGTAGCTCCTAATAACAAGTACTGTGAAAGACATATGCATAGAGGTCGTCCCCGTTCAAGAAAGCCTGTGGAACTTCACACAAATAACAATAACAATAGCAATAGTCATCATCAAATCAAAAGGGCTCGTTGTGATTCTTCTAATTCTTTTTCTCTGCCTGATTTTACTGTGGCTGTTCCTCCTAATCCAACTACAAGAAAATATGGATCTTCATCACATTTTCTTGCTTCCACTCCCCTTCATCCTTATCTCCAATCTTCATTTTCTTTGCATAATACCAGCTTTGAGGCTTCAAATAAGCAACCAAGGTGAGTTTATATCTGTATTTTGCTATATCTGTTTAGAATCACATGTTTTGAATCATATTGAGTTTGACTAAATCAGGTTGCCATTGTGATTTTGTTGAATCCCTTAAGGCTTGGATCTTCTGAGTGTAGCTTTTGCTAAAATCTGTGATTCTTCTAAATTTATCATGAAACCAAACATGTACTATGTCTTTGTTTGTTTTGATTTGGCTTTTCCTTATTCACTTTCATGTTTTGTTTTGATTTGGTCTAAAGACTCCAAATAAAGCTTGATTTTTTTTTTTCCTCTATGAAATTCACTCTTAAATAAATGCATTGTTTTATGGTGTTAGTATTATGGAATTTTTCTAGTTTGTTATTGATTTGGTGAATTGAATGAAAAGGGGCTTGGAGTGGATGCTGAATGGAGATCCAATTTCCCTTGGTGCTTCTAATTCAGGATGGAACCCTCTGATGCATAACAACAAACTTGGAATGACCAATGGAAGTTCCTATCATAATAACACTGAATCCCAGTATCTGAATTCATTTCCACTATATAACAGTTCTGAACTAGCTCAACATGAAAAACCCTTTCCTCTCTTACTTAATCCCCTTGTTGTTCCAATGCAAACTCTCCAATCTGAGAAACCAAGAGGTTTTAGTTTCATTGATGCTTGGTCTAATGCAGAGACAGTGGAAAACAATGCCAACACCACCACCACCTCTAACAATGGTTCTGCATCAGTTGGTAAATTATCCCTTTCATCACTTGATCTATCAATGGGAGGTAGTGCTGTGAGTGAAGAAATGAGTACTATTGAAATGAGTGATGATAGTACTAAAATAGCATTCTCAAGTTGGCTCAATCCAGCACAACCTTGGGTAGGTTCAACACCTGGTGGTCCACTAGCTGAAGTTCTAAGGCCAAGCAATGTTACTTCTATCAGTGATGCAACAAATTCCAATCCATCTTCACCTCTCACAACAACAAATCGTGTCGAATCCATTGGCACTTCAGGGACAGGAATGGTATCATCTCCATCTGGTGTTTTGCATAATAAAACACTTGCTTCATTTTCTGATAGTAGTGGTAATAGCAGTCCAAATGTTGCATCATCAAAGGCTAATTCTGAAATTGCCTTACTCAATAAGTTTAATCATATTTCATATGTAAATTAA

Protein sequence

>MS.gene06630.t1

MGEFRVQDKEPTKKTNNNNTSSVVGSVQSFEGFSNKNMMILQHHNHHHRSFFDNHDSSSVSAAVDADGYGPTTYNMSFGGDSSALGANAIIDNGGVSLNFQPFHNISASNTTLKAGGMAASIGIGYPPFTIAQWRELERQAMIYKYLMASLPVPSHLLSLDGGFNLRLSNRNNTDPEAGRCRRTDGKKWRCSRDVAPNNKYCERHMHRGRPRSRKPVELHTNNNNNSNSHHQIKRARCDSSNSFSLPDFTVAVPPNPTTRKYGSSSHFLASTPLHPYLQSSFSLHNTSFEASNKQPRGLEWMLNGDPISLGASNSGWNPLMHNNKLGMTNGSSYHNNTESQYLNSFPLYNSSELAQHEKPFPLLLNPLVVPMQTLQSEKPRGFSFIDAWSNAETVENNANTTTTSNNGSASVGKLSLSSLDLSMGGSAVSEEMSTIEMSDDSTKIAFSSWLNPAQPWVGSTPGGPLAEVLRPSNVTSISDATNSNPSSPLTTTNRVESIGTSGTGMVSSPSGVLHNKTLASFSDSSGNSSPNVASSKANSEIALLNKFNHISYVN