Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066323.t1 | RHN62980.1 | 97.4 | 232 | 6 | 0 | 1 | 232 | 1 | 232 | 2.50E-136 | 494.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066323.t1 | Q8VWG3 | 80.5 | 154 | 30 | 0 | 72 | 225 | 130 | 283 | 6.4e-80 | 298.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066323.t1 | A0A396IBK2 | 97.4 | 232 | 6 | 0 | 1 | 232 | 1 | 232 | 1.8e-136 | 494.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene066323.t1 | TF | C2H2 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066323.t1 | MTR_1g093095 | 67.816 | 174 | 51 | 2 | 61 | 229 | 87 | 260 | 4.67e-85 | 254 |
MS.gene066323.t1 | MTR_2g090745 | 34.783 | 161 | 95 | 5 | 59 | 218 | 8 | 159 | 5.39e-21 | 90.9 |
MS.gene066323.t1 | MTR_1g112270 | 33.540 | 161 | 95 | 5 | 61 | 218 | 56 | 207 | 4.67e-20 | 88.6 |
MS.gene066323.t1 | MTR_4g059870 | 33.775 | 151 | 91 | 4 | 69 | 218 | 49 | 191 | 5.53e-20 | 88.2 |
MS.gene066323.t1 | MTR_2g093960 | 35.099 | 151 | 89 | 4 | 69 | 218 | 43 | 185 | 1.19e-19 | 87.0 |
MS.gene066323.t1 | MTR_1g112270 | 33.775 | 151 | 90 | 4 | 69 | 218 | 55 | 196 | 2.36e-19 | 86.7 |
MS.gene066323.t1 | MTR_1g094115 | 34.868 | 152 | 87 | 5 | 69 | 218 | 58 | 199 | 5.93e-19 | 85.5 |
MS.gene066323.t1 | MTR_8g017210 | 32.911 | 158 | 95 | 5 | 63 | 218 | 66 | 214 | 7.18e-19 | 85.1 |
MS.gene066323.t1 | MTR_1g016010 | 32.895 | 152 | 91 | 5 | 69 | 218 | 52 | 194 | 1.42e-18 | 84.0 |
MS.gene066323.t1 | MTR_2g099990 | 32.911 | 158 | 95 | 5 | 63 | 218 | 50 | 198 | 6.15e-18 | 82.4 |
MS.gene066323.t1 | MTR_1g094115 | 37.500 | 136 | 73 | 5 | 85 | 218 | 57 | 182 | 6.94e-18 | 82.4 |
MS.gene066323.t1 | MTR_2g099990 | 33.333 | 138 | 82 | 4 | 82 | 218 | 1 | 129 | 1.45e-16 | 78.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066323.t1 | AT1G34790 | 66.010 | 203 | 54 | 2 | 40 | 227 | 83 | 285 | 2.54e-96 | 283 |
MS.gene066323.t1 | AT3G57670 | 69.832 | 179 | 54 | 0 | 47 | 225 | 177 | 355 | 2.90e-91 | 273 |
MS.gene066323.t1 | AT1G51220 | 76.250 | 160 | 38 | 0 | 72 | 231 | 163 | 322 | 2.70e-90 | 270 |
MS.gene066323.t1 | AT3G20880 | 59.091 | 220 | 55 | 2 | 39 | 224 | 175 | 393 | 1.55e-89 | 270 |
MS.gene066323.t1 | AT1G13290 | 64.615 | 195 | 59 | 4 | 40 | 228 | 54 | 244 | 6.71e-87 | 259 |
MS.gene066323.t1 | AT1G08290 | 53.333 | 255 | 75 | 5 | 6 | 224 | 72 | 318 | 4.16e-86 | 259 |
MS.gene066323.t1 | AT1G34370 | 40.113 | 177 | 95 | 6 | 57 | 224 | 3 | 177 | 1.32e-30 | 114 |
MS.gene066323.t1 | AT1G34370 | 38.000 | 200 | 113 | 6 | 34 | 224 | 190 | 387 | 3.16e-30 | 117 |
MS.gene066323.t1 | AT1G34370 | 38.000 | 200 | 113 | 6 | 34 | 224 | 190 | 387 | 3.16e-30 | 117 |
MS.gene066323.t1 | AT5G22890 | 37.580 | 157 | 89 | 5 | 80 | 229 | 211 | 365 | 1.50e-24 | 100 |
MS.gene066323.t1 | AT5G03150 | 34.437 | 151 | 90 | 4 | 69 | 218 | 64 | 206 | 2.81e-21 | 92.0 |
MS.gene066323.t1 | AT1G14580 | 31.707 | 205 | 123 | 6 | 15 | 218 | 17 | 205 | 3.74e-20 | 89.0 |
MS.gene066323.t1 | AT1G14580 | 31.707 | 205 | 123 | 6 | 15 | 218 | 17 | 205 | 3.74e-20 | 89.0 |
MS.gene066323.t1 | AT1G14580 | 31.707 | 205 | 123 | 6 | 15 | 218 | 31 | 219 | 3.76e-20 | 89.0 |
MS.gene066323.t1 | AT5G44160 | 32.044 | 181 | 103 | 5 | 49 | 218 | 18 | 189 | 4.75e-20 | 88.6 |
MS.gene066323.t1 | AT5G44160 | 34.437 | 151 | 89 | 4 | 69 | 218 | 9 | 150 | 1.09e-19 | 87.4 |
MS.gene066323.t1 | AT5G66730 | 33.553 | 152 | 89 | 5 | 69 | 218 | 43 | 184 | 1.61e-19 | 87.0 |
MS.gene066323.t1 | AT2G02080 | 33.155 | 187 | 110 | 7 | 34 | 218 | 33 | 206 | 1.74e-19 | 87.0 |
MS.gene066323.t1 | AT2G02080 | 33.155 | 187 | 110 | 7 | 34 | 218 | 33 | 206 | 1.74e-19 | 87.0 |
MS.gene066323.t1 | AT2G02080 | 33.155 | 187 | 110 | 7 | 34 | 218 | 33 | 206 | 1.74e-19 | 87.0 |
MS.gene066323.t1 | AT2G02080 | 33.155 | 187 | 110 | 7 | 34 | 218 | 33 | 206 | 1.74e-19 | 87.0 |
MS.gene066323.t1 | AT5G60470 | 33.929 | 168 | 100 | 5 | 49 | 214 | 32 | 190 | 2.44e-19 | 86.3 |
MS.gene066323.t1 | AT5G60470 | 33.929 | 168 | 100 | 5 | 49 | 214 | 36 | 194 | 2.55e-19 | 86.3 |
MS.gene066323.t1 | AT5G60470 | 35.374 | 147 | 87 | 3 | 69 | 214 | 46 | 185 | 2.92e-19 | 86.3 |
MS.gene066323.t1 | AT1G55110 | 33.548 | 155 | 92 | 5 | 66 | 218 | 71 | 216 | 3.63e-19 | 85.9 |
MS.gene066323.t1 | AT1G55110 | 33.548 | 155 | 92 | 5 | 66 | 218 | 71 | 216 | 3.63e-19 | 85.9 |
MS.gene066323.t1 | AT1G55110 | 33.548 | 155 | 92 | 5 | 66 | 218 | 71 | 216 | 3.63e-19 | 85.9 |
MS.gene066323.t1 | AT2G02070 | 34.932 | 146 | 85 | 4 | 74 | 218 | 68 | 204 | 4.08e-19 | 85.9 |
MS.gene066323.t1 | AT2G02070 | 34.932 | 146 | 85 | 4 | 74 | 218 | 68 | 204 | 4.08e-19 | 85.9 |
MS.gene066323.t1 | AT3G45260 | 35.443 | 158 | 92 | 5 | 63 | 218 | 43 | 192 | 7.28e-19 | 85.1 |
MS.gene066323.t1 | AT3G45260 | 35.443 | 158 | 92 | 5 | 63 | 218 | 43 | 192 | 7.28e-19 | 85.1 |
MS.gene066323.t1 | AT1G03840 | 33.544 | 158 | 94 | 5 | 63 | 218 | 45 | 193 | 9.84e-19 | 84.7 |
MS.gene066323.t1 | AT1G03840 | 33.121 | 157 | 94 | 5 | 63 | 218 | 45 | 191 | 1.22e-18 | 84.7 |
MS.gene066323.t1 | AT2G02080 | 36.842 | 133 | 74 | 4 | 87 | 218 | 6 | 129 | 2.83e-18 | 83.2 |
MS.gene066323.t1 | AT2G02080 | 36.842 | 133 | 74 | 4 | 87 | 218 | 6 | 129 | 2.83e-18 | 83.2 |
MS.gene066323.t1 | AT3G50700 | 30.939 | 181 | 112 | 6 | 42 | 218 | 15 | 186 | 8.58e-18 | 82.0 |
MS.gene066323.t1 | AT4G02670 | 32.468 | 154 | 95 | 4 | 66 | 218 | 61 | 206 | 1.10e-17 | 81.3 |
MS.gene066323.t1 | AT4G02670 | 33.117 | 154 | 94 | 4 | 66 | 218 | 63 | 208 | 1.13e-17 | 81.3 |
MS.gene066323.t1 | AT3G13810 | 31.788 | 151 | 94 | 4 | 69 | 218 | 81 | 223 | 2.07e-17 | 80.9 |
MS.gene066323.t1 | AT3G13810 | 31.788 | 151 | 94 | 4 | 69 | 218 | 81 | 223 | 2.07e-17 | 80.9 |
MS.gene066323.t1 | AT3G13810 | 31.818 | 154 | 96 | 4 | 66 | 218 | 73 | 218 | 2.46e-17 | 80.9 |
MS.gene066323.t1 | AT3G13810 | 31.818 | 154 | 96 | 4 | 66 | 218 | 59 | 204 | 2.48e-17 | 80.9 |
MS.gene066323.t1 | AT3G13810 | 31.788 | 151 | 94 | 4 | 69 | 218 | 82 | 224 | 3.18e-17 | 80.5 |
MS.gene066323.t1 | AT3G13810 | 31.788 | 151 | 94 | 4 | 69 | 218 | 68 | 210 | 3.24e-17 | 80.5 |
Find 48 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTTCATCTGGTGGGATTTA+AGG | 0.074753 | 5.4:+49899157 | MS.gene066323:CDS |
CTAAGCCATTGAAGGATTTC+AGG | 0.257197 | 5.4:+49898924 | MS.gene066323:CDS |
CCACCAGATGAAGAAGAAAA+AGG | 0.280585 | 5.4:-49899148 | None:intergenic |
CACATCAAAGCATTTGGATT+TGG | 0.282170 | 5.4:+49899118 | MS.gene066323:CDS |
ATCAAGTTCCTAACAATTAC+TGG | 0.290004 | 5.4:+49898126 | MS.gene066323:CDS |
GTTGGTATCCAGTAATTGTT+AGG | 0.349260 | 5.4:-49898134 | None:intergenic |
GGTGATTCACTTGAATTGTT+AGG | 0.354362 | 5.4:-49898074 | None:intergenic |
TTCACAAATCCATTCTCATT+TGG | 0.360159 | 5.4:-49898095 | None:intergenic |
AAGGATCACATCAAAGCATT+TGG | 0.368107 | 5.4:+49899112 | MS.gene066323:CDS |
TCCTTCAATGGCTTAGCTCT+TGG | 0.384210 | 5.4:-49898917 | None:intergenic |
CCATGTTATTGTTGTTCAAA+TGG | 0.386271 | 5.4:+49898872 | MS.gene066323:CDS |
CAATCGTTACAACAACCTTC+AGG | 0.392156 | 5.4:+49898217 | MS.gene066323:CDS |
CAAACACAAGAGGTCACTTA+AGG | 0.393293 | 5.4:+49899093 | MS.gene066323:CDS |
TAATTGTTAGGAACTTGATT+TGG | 0.405327 | 5.4:-49898122 | None:intergenic |
GTTAGGAAGGCCTATTTGTA+AGG | 0.411385 | 5.4:-49898057 | None:intergenic |
CCTTTGCTAAGTAGCTTCCT+AGG | 0.417085 | 5.4:+49897957 | MS.gene066323:CDS |
GTCACAGTGGCCTTACAAAT+AGG | 0.422585 | 5.4:+49898047 | MS.gene066323:CDS |
ACTCAAGAACAGATTCTCAT+TGG | 0.435131 | 5.4:+49898155 | MS.gene066323:CDS |
TCGAAAATGTGGGAAGCCAT+TGG | 0.482738 | 5.4:+49898997 | MS.gene066323:CDS |
CAATCACCTTTCACTGCCAA+TGG | 0.484406 | 5.4:-49899013 | None:intergenic |
AGTGAATCACCAAATGAGAA+TGG | 0.498871 | 5.4:+49898086 | MS.gene066323:CDS |
GGTCTAACAATGGTCGTGGA+TGG | 0.504798 | 5.4:-49898847 | None:intergenic |
CATTGGCAGTGAAAGGTGAT+TGG | 0.508045 | 5.4:+49899014 | MS.gene066323:CDS |
TCCAAGAGCTAAGCCATTGA+AGG | 0.510873 | 5.4:+49898916 | MS.gene066323:CDS |
ATGAGAATCTGTTCTTGAGT+TGG | 0.521544 | 5.4:-49898152 | None:intergenic |
ACGTTTACTTGTCGAAAATG+TGG | 0.532025 | 5.4:+49898986 | MS.gene066323:CDS |
AGTGTCCTGAAATCCTTCAA+TGG | 0.536755 | 5.4:-49898929 | None:intergenic |
GTCTAACAATGGTCGTGGAT+GGG | 0.548133 | 5.4:-49898846 | None:intergenic |
AAGCTACTTAGCAAAGGTAG+AGG | 0.560479 | 5.4:-49897951 | None:intergenic |
ATTCACTTGAATTGTTAGGA+AGG | 0.564830 | 5.4:-49898070 | None:intergenic |
GGTAGGTCTAACAATGGTCG+TGG | 0.569196 | 5.4:-49898851 | None:intergenic |
CGTTTACTTGTCGAAAATGT+GGG | 0.576502 | 5.4:+49898987 | MS.gene066323:CDS |
TTTGGTGATAGATGCATATG+TGG | 0.589947 | 5.4:+49898777 | MS.gene066323:intron |
TTGAACAACAATAACATGGT+AGG | 0.599315 | 5.4:-49898868 | None:intergenic |
GTTCTTGTGAAGTTGAACCT+AGG | 0.608229 | 5.4:-49897974 | None:intergenic |
CCTAGGAAGCTACTTAGCAA+AGG | 0.615377 | 5.4:-49897957 | None:intergenic |
ACACACTACAAGAGAAAGCA+TGG | 0.621285 | 5.4:+49898956 | MS.gene066323:CDS |
CCATTTGAACAACAATAACA+TGG | 0.622921 | 5.4:-49898872 | None:intergenic |
TTGGTGATAGATGCATATGT+GGG | 0.631361 | 5.4:+49898778 | MS.gene066323:intron |
AAGCGTTGGCTTTGTATCTG+TGG | 0.634099 | 5.4:+49899061 | MS.gene066323:CDS |
GGGAAGCCATTGGCAGTGAA+AGG | 0.634540 | 5.4:+49899007 | MS.gene066323:CDS |
GATCAGATTTCAAACACAAG+AGG | 0.638076 | 5.4:+49899083 | MS.gene066323:CDS |
ATCATGTTTCAATCAAGCTG+AGG | 0.648432 | 5.4:+49898022 | MS.gene066323:CDS |
CATGGTTCGCAGTATCGAAG+AGG | 0.675110 | 5.4:+49898803 | MS.gene066323:CDS |
TAACATGGTAGGTCTAACAA+TGG | 0.693527 | 5.4:-49898857 | None:intergenic |
TGGTGATAGATGCATATGTG+GGG | 0.723679 | 5.4:+49898779 | MS.gene066323:intron |
TCAAGCTGAGGATGTCACAG+TGG | 0.732110 | 5.4:+49898034 | MS.gene066323:CDS |
GGTGATAGATGCATATGTGG+GGG | 0.769392 | 5.4:+49898780 | MS.gene066323:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ACCAAATTGAATATATAATA+AGG | - | chr5.4:49898763-49898782 | None:intergenic | 15.0% |
!! | CCAAATTGAATATATAATAA+GGG | - | chr5.4:49898762-49898781 | None:intergenic | 15.0% |
!!! | TAAAATATTGATTGCAATAA+GGG | - | chr5.4:49898662-49898681 | None:intergenic | 15.0% |
!!! | TTAAAATATTGATTGCAATA+AGG | - | chr5.4:49898663-49898682 | None:intergenic | 15.0% |
!! | CCCTTATTATATATTCAATT+TGG | + | chr5.4:49898759-49898778 | MS.gene066323:intron | 20.0% |
!! | TAATCTCTCCAAAAAAAAAA+AGG | + | chr5.4:49898392-49898411 | MS.gene066323:intron | 20.0% |
!!! | AGCATTTACCTTTTTTTTTT+TGG | - | chr5.4:49898403-49898422 | None:intergenic | 20.0% |
! | AAACTTTAATTGAAGTTCCT+AGG | + | chr5.4:49898517-49898536 | MS.gene066323:intron | 25.0% |
! | AACTTTAATTGAAGTTCCTA+GGG | + | chr5.4:49898518-49898537 | MS.gene066323:intron | 25.0% |
! | AGTGATTCTCTATAATATCA+AGG | + | chr5.4:49898618-49898637 | MS.gene066323:intron | 25.0% |
! | TAATTGTTAGGAACTTGATT+TGG | - | chr5.4:49898125-49898144 | None:intergenic | 25.0% |
! | TAATTTATTTGCGACTATCA+AGG | - | chr5.4:49898687-49898706 | None:intergenic | 25.0% |
!! | GATTTATGACTTTCATTTTG+TGG | - | chr5.4:49898005-49898024 | None:intergenic | 25.0% |
!! | GTGACAATAAAGTATTATGT+AGG | - | chr5.4:49898318-49898337 | None:intergenic | 25.0% |
AAACCTAGATTTCTGATCTT+AGG | + | chr5.4:49898722-49898741 | MS.gene066323:intron | 30.0% | |
AATCCTAAGATCAGAAATCT+AGG | - | chr5.4:49898728-49898747 | None:intergenic | 30.0% | |
ATCAAGTTCCTAACAATTAC+TGG | + | chr5.4:49898126-49898145 | MS.gene066323:CDS | 30.0% | |
ATTCACTTGAATTGTTAGGA+AGG | - | chr5.4:49898073-49898092 | None:intergenic | 30.0% | |
CAACTCAATAGCATAATCTT+TGG | + | chr5.4:49898263-49898282 | MS.gene066323:intron | 30.0% | |
CCATTTGAACAACAATAACA+TGG | - | chr5.4:49898875-49898894 | None:intergenic | 30.0% | |
TTCACAAATCCATTCTCATT+TGG | - | chr5.4:49898098-49898117 | None:intergenic | 30.0% | |
TTGAACAACAATAACATGGT+AGG | - | chr5.4:49898871-49898890 | None:intergenic | 30.0% | |
! | CCATGTTATTGTTGTTCAAA+TGG | + | chr5.4:49898872-49898891 | MS.gene066323:CDS | 30.0% |
! | TGACTTTCATTTTGTGGTAA+AGG | - | chr5.4:49897999-49898018 | None:intergenic | 30.0% |
! | TGTAACGATTGAAAGTTTTG+AGG | - | chr5.4:49898208-49898227 | None:intergenic | 30.0% |
AAGAAAACTACTACACCTGA+AGG | - | chr5.4:49898235-49898254 | None:intergenic | 35.0% | |
ACGTTTACTTGTCGAAAATG+TGG | + | chr5.4:49898986-49899005 | MS.gene066323:CDS | 35.0% | |
ACTCAAGAACAGATTCTCAT+TGG | + | chr5.4:49898155-49898174 | MS.gene066323:CDS | 35.0% | |
AGAACTCATGAGAAAAACTG+TGG | + | chr5.4:49899037-49899056 | MS.gene066323:CDS | 35.0% | |
AGTGAATCACCAAATGAGAA+TGG | + | chr5.4:49898086-49898105 | MS.gene066323:CDS | 35.0% | |
ATCATGTTTCAATCAAGCTG+AGG | + | chr5.4:49898022-49898041 | MS.gene066323:CDS | 35.0% | |
ATGAGAATCTGTTCTTGAGT+TGG | - | chr5.4:49898155-49898174 | None:intergenic | 35.0% | |
CACCAGATGAAGAAGAAAAA+GGG | - | chr5.4:49899150-49899169 | None:intergenic | 35.0% | |
CATACAATCCTTGTCAAATC+TGG | + | chr5.4:49898488-49898507 | MS.gene066323:intron | 35.0% | |
CGTTTACTTGTCGAAAATGT+GGG | + | chr5.4:49898987-49899006 | MS.gene066323:CDS | 35.0% | |
GATCAGATTTCAAACACAAG+AGG | + | chr5.4:49899083-49899102 | MS.gene066323:CDS | 35.0% | |
GGTGATTCACTTGAATTGTT+AGG | - | chr5.4:49898077-49898096 | None:intergenic | 35.0% | |
GTTGGTATCCAGTAATTGTT+AGG | - | chr5.4:49898137-49898156 | None:intergenic | 35.0% | |
TAACATGGTAGGTCTAACAA+TGG | - | chr5.4:49898860-49898879 | None:intergenic | 35.0% | |
TTCATTGACCAGATTTGACA+AGG | - | chr5.4:49898499-49898518 | None:intergenic | 35.0% | |
! | AAGGATCACATCAAAGCATT+TGG | + | chr5.4:49899112-49899131 | MS.gene066323:CDS | 35.0% |
! | ATTGAAGTTCCTAGGGTTTT+AGG | + | chr5.4:49898525-49898544 | MS.gene066323:intron | 35.0% |
! | CACATCAAAGCATTTGGATT+TGG | + | chr5.4:49899118-49899137 | MS.gene066323:CDS | 35.0% |
! | CTTTTTCTTCTTCATCTGGT+GGG | + | chr5.4:49899149-49899168 | MS.gene066323:CDS | 35.0% |
! | TTGGTGATAGATGCATATGT+GGG | + | chr5.4:49898778-49898797 | MS.gene066323:intron | 35.0% |
! | TTTGGTGATAGATGCATATG+TGG | + | chr5.4:49898777-49898796 | MS.gene066323:intron | 35.0% |
!!! | TGAAAGTTTTGAGGCAAACT+GGG | - | chr5.4:49898199-49898218 | None:intergenic | 35.0% |
!!! | TTGAAAGTTTTGAGGCAAAC+TGG | - | chr5.4:49898200-49898219 | None:intergenic | 35.0% |
AAGCTACTTAGCAAAGGTAG+AGG | - | chr5.4:49897954-49897973 | None:intergenic | 40.0% | |
ACACACTACAAGAGAAAGCA+TGG | + | chr5.4:49898956-49898975 | MS.gene066323:CDS | 40.0% | |
AGTGTCCTGAAATCCTTCAA+TGG | - | chr5.4:49898932-49898951 | None:intergenic | 40.0% | |
ATTGATTGCAATAAGGGTCG+TGG | - | chr5.4:49898656-49898675 | None:intergenic | 40.0% | |
CAAACACAAGAGGTCACTTA+AGG | + | chr5.4:49899093-49899112 | MS.gene066323:CDS | 40.0% | |
CAATCGTTACAACAACCTTC+AGG | + | chr5.4:49898217-49898236 | MS.gene066323:CDS | 40.0% | |
CCACCAGATGAAGAAGAAAA+AGG | - | chr5.4:49899151-49899170 | None:intergenic | 40.0% | |
CTAAGCCATTGAAGGATTTC+AGG | + | chr5.4:49898924-49898943 | MS.gene066323:CDS | 40.0% | |
CTGTTATGTCCTAAAACCCT+AGG | - | chr5.4:49898537-49898556 | None:intergenic | 40.0% | |
GTTAGGAAGGCCTATTTGTA+AGG | - | chr5.4:49898060-49898079 | None:intergenic | 40.0% | |
GTTCTTGTGAAGTTGAACCT+AGG | - | chr5.4:49897977-49897996 | None:intergenic | 40.0% | |
TGGTGATAGATGCATATGTG+GGG | + | chr5.4:49898779-49898798 | MS.gene066323:intron | 40.0% | |
! | AGCCCTTTTTCTTCTTCATC+TGG | + | chr5.4:49899145-49899164 | MS.gene066323:CDS | 40.0% |
! | CCTTTTTCTTCTTCATCTGG+TGG | + | chr5.4:49899148-49899167 | MS.gene066323:CDS | 40.0% |
AGAAAAACTGTGGCAAGCGT+TGG | + | chr5.4:49899047-49899066 | MS.gene066323:CDS | 45.0% | |
ATTGCAATAAGGGTCGTGGT+AGG | - | chr5.4:49898652-49898671 | None:intergenic | 45.0% | |
CAATCACCTTTCACTGCCAA+TGG | - | chr5.4:49899016-49899035 | None:intergenic | 45.0% | |
CATTGGCAGTGAAAGGTGAT+TGG | + | chr5.4:49899014-49899033 | MS.gene066323:CDS | 45.0% | |
CCTAGGAAGCTACTTAGCAA+AGG | - | chr5.4:49897960-49897979 | None:intergenic | 45.0% | |
CCTTTGCTAAGTAGCTTCCT+AGG | + | chr5.4:49897957-49897976 | MS.gene066323:CDS | 45.0% | |
GAACGCAATCGAGGTTTCAT+CGG | + | chr5.4:49898584-49898603 | MS.gene066323:intron | 45.0% | |
GAGGTTTCATCGGTCAGATT+TGG | + | chr5.4:49898594-49898613 | MS.gene066323:intron | 45.0% | |
GGTGATAGATGCATATGTGG+GGG | + | chr5.4:49898780-49898799 | MS.gene066323:intron | 45.0% | |
GTCTAACAATGGTCGTGGAT+GGG | - | chr5.4:49898849-49898868 | None:intergenic | 45.0% | |
TCCAAGAGCTAAGCCATTGA+AGG | + | chr5.4:49898916-49898935 | MS.gene066323:CDS | 45.0% | |
TCGAAAATGTGGGAAGCCAT+TGG | + | chr5.4:49898997-49899016 | MS.gene066323:CDS | 45.0% | |
! | GTCACAGTGGCCTTACAAAT+AGG | + | chr5.4:49898047-49898066 | MS.gene066323:CDS | 45.0% |
! | TCCTTCAATGGCTTAGCTCT+TGG | - | chr5.4:49898920-49898939 | None:intergenic | 45.0% |
!! | AAGCGTTGGCTTTGTATCTG+TGG | + | chr5.4:49899061-49899080 | MS.gene066323:CDS | 45.0% |
!! | TGGGTTCTTTTTAGCGAGTC+TGG | - | chr5.4:49898830-49898849 | None:intergenic | 45.0% |
GGTAGGTCTAACAATGGTCG+TGG | - | chr5.4:49898854-49898873 | None:intergenic | 50.0% | |
GGTCTAACAATGGTCGTGGA+TGG | - | chr5.4:49898850-49898869 | None:intergenic | 50.0% | |
TAGATGCATATGTGGGGGCA+TGG | + | chr5.4:49898785-49898804 | MS.gene066323:intron | 50.0% | |
TCAAGCTGAGGATGTCACAG+TGG | + | chr5.4:49898034-49898053 | MS.gene066323:CDS | 50.0% | |
TTGCAACACGAACGCAATCG+AGG | + | chr5.4:49898575-49898594 | MS.gene066323:intron | 50.0% | |
! | CATGGTTCGCAGTATCGAAG+AGG | + | chr5.4:49898803-49898822 | MS.gene066323:CDS | 50.0% |
GGGAAGCCATTGGCAGTGAA+AGG | + | chr5.4:49899007-49899026 | MS.gene066323:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 49897930 | 49899177 | 49897930 | ID=MS.gene066323 |
chr5.4 | mRNA | 49897930 | 49899177 | 49897930 | ID=MS.gene066323.t1;Parent=MS.gene066323 |
chr5.4 | exon | 49897930 | 49898238 | 49897930 | ID=MS.gene066323.t1.exon1;Parent=MS.gene066323.t1 |
chr5.4 | CDS | 49897930 | 49898238 | 49897930 | ID=cds.MS.gene066323.t1;Parent=MS.gene066323.t1 |
chr5.4 | exon | 49898788 | 49899177 | 49898788 | ID=MS.gene066323.t1.exon2;Parent=MS.gene066323.t1 |
chr5.4 | CDS | 49898788 | 49899177 | 49898788 | ID=cds.MS.gene066323.t1;Parent=MS.gene066323.t1 |
Gene Sequence |
Protein sequence |