AlfalfaGEDB | MS.gene066341

M. sativa cultivar XinJiangDaYe / MS.gene066341

KEGG: K15032
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02536.17

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066341.t1	XP_003609653.2	68.9	280	85	1	1	280	94	371	9.40E-101	376.7

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066341.t1	G7JKD0	68.9	280	85	1	1	280	94	371	6.8e-101	376.7

TFs/TRs:

Gene ID	Type	Classification
MS.gene066341.t1	TR	mTERF

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066341.t1	MTR_4g120380	70.213	282	82	1	1	282	94	373	1.66e-142	405
MS.gene066341.t1	MTR_4g119580	68.929	280	85	1	1	280	94	371	9.74e-128	368
MS.gene066341.t1	MTR_4g120380	69.112	259	78	1	1	259	94	350	2.28e-125	363
MS.gene066341.t1	MTR_4g119570	59.216	255	69	2	28	282	13	232	2.26e-97	286
MS.gene066341.t1	MTR_2g437040	46.953	279	146	1	1	279	92	368	3.63e-87	265
MS.gene066341.t1	MTR_2g436400	46.809	282	148	1	1	282	99	378	1.79e-85	261
MS.gene066341.t1	MTR_2g436460	48.387	279	141	2	1	278	97	373	9.36e-85	259
MS.gene066341.t1	MTR_4g119550	46.429	280	147	2	1	279	101	378	8.38e-84	257
MS.gene066341.t1	MTR_2g437030	49.275	276	138	1	4	279	181	454	1.13e-81	254
MS.gene066341.t1	MTR_2g437990	46.786	280	145	2	1	278	102	379	1.96e-81	252
MS.gene066341.t1	MTR_2g438010	44.681	282	151	2	1	279	122	401	9.95e-80	247
MS.gene066341.t1	MTR_2g437960	45.390	282	149	2	1	279	105	384	2.41e-79	246
MS.gene066341.t1	MTR_2g437180	45.907	281	145	3	1	278	101	377	4.70e-79	244
MS.gene066341.t1	MTR_2g437150	46.479	284	145	3	1	279	107	388	5.48e-79	245
MS.gene066341.t1	MTR_2g437960	45.390	282	149	2	1	279	105	384	6.19e-79	245
MS.gene066341.t1	MTR_2g076320	44.840	281	150	2	1	278	102	380	1.28e-78	244
MS.gene066341.t1	MTR_2g437170	45.775	284	147	3	1	279	107	388	1.49e-77	241
MS.gene066341.t1	MTR_2g437020	45.520	279	151	1	1	279	91	368	1.57e-77	240
MS.gene066341.t1	MTR_2g437130	44.444	279	153	1	1	279	93	369	1.64e-77	240
MS.gene066341.t1	MTR_2g437200	42.271	317	143	3	1	279	82	396	2.52e-77	240
MS.gene066341.t1	MTR_2g437120	45.455	286	142	5	1	279	103	381	6.47e-77	240
MS.gene066341.t1	MTR_2g437100	46.127	284	146	3	1	279	112	393	9.60e-77	239
MS.gene066341.t1	MTR_2g437260	42.294	279	161	0	1	279	86	364	1.34e-76	238
MS.gene066341.t1	MTR_2g437060	43.369	279	156	1	1	279	107	383	4.97e-76	237
MS.gene066341.t1	MTR_2g437160	45.552	281	149	3	1	279	115	393	1.09e-74	234
MS.gene066341.t1	MTR_2g437080	44.444	279	153	1	1	279	92	368	1.79e-74	233
MS.gene066341.t1	MTR_2g437240	40.379	317	149	3	1	279	82	396	1.59e-73	231
MS.gene066341.t1	MTR_2g436440	44.203	276	152	1	4	279	101	374	8.21e-73	228
MS.gene066341.t1	MTR_2g438020	40.694	317	148	3	1	279	121	435	2.48e-71	228
MS.gene066341.t1	MTR_2g019810	43.357	286	146	4	1	279	81	357	3.16e-70	221
MS.gene066341.t1	MTR_2g019840	42.294	279	159	2	1	279	93	369	1.75e-68	217
MS.gene066341.t1	MTR_2g437940	41.935	279	135	4	1	279	101	352	4.60e-64	206
MS.gene066341.t1	MTR_2g437090	52.597	154	73	0	126	279	3	156	4.53e-51	166
MS.gene066341.t1	MTR_2g437160	49.123	171	85	1	109	279	134	302	7.41e-50	167
MS.gene066341.t1	MTR_3g450500	32.028	281	185	2	5	280	92	371	7.10e-46	158
MS.gene066341.t1	MTR_4g007490	31.338	284	188	3	1	279	87	368	1.21e-42	150
MS.gene066341.t1	MTR_8g080990	26.690	281	205	1	1	280	93	373	3.02e-30	117
MS.gene066341.t1	MTR_8g081000	25.704	284	208	3	1	282	106	388	5.27e-27	108
MS.gene066341.t1	MTR_8g081000	25.704	284	208	3	1	282	106	388	5.56e-27	108
MS.gene066341.t1	MTR_8g081000	25.704	284	208	3	1	282	106	388	5.73e-27	108
MS.gene066341.t1	MTR_4g119615	74.510	51	13	0	223	273	26	76	4.41e-17	75.1
MS.gene066341.t1	MTR_2g436370	36.735	98	62	0	1	98	98	195	5.71e-16	75.1
MS.gene066341.t1	MTR_2g436380	50.820	61	30	0	126	186	3	63	6.88e-13	67.8
MS.gene066341.t1	MTR_2g019830	53.968	63	28	1	217	279	136	197	1.34e-11	62.8
MS.gene066341.t1	MTR_3g085240	35.955	89	40	1	183	271	176	247	2.79e-11	62.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066341.t1	AT5G07900	30.282	284	194	2	1	280	118	401	1.92e-46	160
MS.gene066341.t1	AT1G61990	29.283	321	177	8	1	281	101	411	2.93e-30	117
MS.gene066341.t1	AT1G61990	29.283	321	177	8	1	281	101	411	2.93e-30	117
MS.gene066341.t1	AT1G21150	26.335	281	201	3	1	276	69	348	3.47e-28	111
MS.gene066341.t1	AT1G61980	25.392	319	197	7	1	280	101	417	4.90e-28	112
MS.gene066341.t1	AT1G61980	25.392	319	197	7	1	280	101	417	4.90e-28	112
MS.gene066341.t1	AT1G61980	25.392	319	197	7	1	280	101	417	4.90e-28	112
MS.gene066341.t1	AT1G61970	25.938	320	194	9	1	280	101	417	5.20e-28	111
MS.gene066341.t1	AT1G61970	25.938	320	194	9	1	280	101	417	5.20e-28	111
MS.gene066341.t1	AT1G61970	25.938	320	194	9	1	280	101	417	5.20e-28	111
MS.gene066341.t1	AT1G61970	25.938	320	194	9	1	280	101	417	5.20e-28	111
MS.gene066341.t1	AT1G61970	25.938	320	194	9	1	280	101	417	5.20e-28	111
MS.gene066341.t1	AT1G61970	25.938	320	194	9	1	280	101	417	5.20e-28	111
MS.gene066341.t1	AT1G61970	25.938	320	194	9	1	280	101	417	5.20e-28	111
MS.gene066341.t1	AT1G21150	26.335	281	201	3	1	276	105	384	5.60e-28	111
MS.gene066341.t1	AT5G64950	29.110	292	197	3	1	282	88	379	8.26e-28	110
MS.gene066341.t1	AT1G21150	26.335	281	201	3	1	276	169	448	9.47e-28	111
MS.gene066341.t1	AT1G62120	24.062	320	202	6	1	280	105	423	5.74e-25	103
MS.gene066341.t1	AT1G62010	23.913	322	198	7	1	281	87	402	3.80e-23	98.2
MS.gene066341.t1	AT1G62150	23.032	343	190	6	1	270	107	448	3.47e-21	93.2
MS.gene066341.t1	AT3G46950	21.264	348	206	6	1	281	101	447	6.59e-18	83.6
MS.gene066341.t1	AT1G62085	29.744	195	134	2	1	193	104	297	7.71e-18	83.6
MS.gene066341.t1	AT1G62085	23.784	185	137	3	89	270	262	445	4.37e-11	63.5
MS.gene066341.t1	AT1G62085	29.744	195	134	2	1	193	104	297	7.71e-18	83.6
MS.gene066341.t1	AT1G62085	23.784	185	137	3	89	270	262	445	4.37e-11	63.5
MS.gene066341.t1	AT1G62110	22.284	359	200	8	1	281	101	458	7.20e-17	80.5
MS.gene066341.t1	AT1G61960	27.179	195	136	3	90	280	261	453	1.86e-16	79.3
MS.gene066341.t1	AT1G61960	26.531	196	140	3	1	194	101	294	4.01e-15	75.5
MS.gene066341.t1	AT1G56380	21.865	311	201	7	1	270	65	374	2.65e-15	75.5
MS.gene066341.t1	AT1G56380	21.865	311	201	7	1	270	76	385	3.11e-15	75.5
MS.gene066341.t1	AT5G23930	21.387	346	204	6	1	280	104	447	3.16e-14	72.8

Find 0 sgRNAs with CRISPR-Local

Find 78 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AAGATATGTGAATTATTTTG+AGG	+	32540:7602-7621	MS.gene066341:CDS	20.0%
!!!	AATAATTCACATATCTTTTC+AGG	-	32540:7599-7618	None:intergenic	20.0%
!	AAATTGAAACTTTGGCAAAA+TGG	-	32540:6878-6897	None:intergenic	25.0%
!	AAGCAAATAGTAAATACTTG+AGG	-	32540:7130-7149	None:intergenic	25.0%
!	AGCAAATAGTAAATACTTGA+GGG	-	32540:7129-7148	None:intergenic	25.0%
!	ATACTAAATCCGAAAATATC+TGG	-	32540:7465-7484	None:intergenic	25.0%
!	GAAGCTAAAAATTGAAACTT+TGG	-	32540:6886-6905	None:intergenic	25.0%
!	TATAGTAATAGCTCTTTGAT+CGG	-	32540:7028-7047	None:intergenic	25.0%
!	TCAAGCAAAAAATGAACATT+TGG	-	32540:7093-7112	None:intergenic	25.0%
!	TCAGATATACAGAATATAGA+AGG	-	32540:7162-7181	None:intergenic	25.0%
!!	GTATATCTGATTCTGATTTT+AGG	+	32540:7172-7191	MS.gene066341:CDS	25.0%
!!!	ATATGTGAATTATTTTGAGG+AGG	+	32540:7605-7624	MS.gene066341:CDS	25.0%
!!!	GTTCATTTTTTGCTTGATTT+TGG	+	32540:7096-7115	MS.gene066341:CDS	25.0%
!!!	TTTCAATTTTTAGCTTCCAA+AGG	+	32540:6889-6908	MS.gene066341:CDS	25.0%
	AACTCATCAGTCAAAGAAAA+TGG	-	32540:7573-7592	None:intergenic	30.0%
	ACACAAAAATATCCATTGGA+AGG	-	32540:7234-7253	None:intergenic	30.0%
	CACAAAAATATCCATTGGAA+GGG	-	32540:7233-7252	None:intergenic	30.0%
	TCGGATTTAGTATAGAGAAA+AGG	+	32540:7472-7491	MS.gene066341:CDS	30.0%
	TTCTTACCAAATCAAAAGCA+GGG	-	32540:6993-7012	None:intergenic	30.0%
!	TTGAAAGCTCCAGATATTTT+CGG	+	32540:7453-7472	MS.gene066341:CDS	30.0%
!!	AATAATCCCTGCTTTTGATT+TGG	+	32540:6984-7003	MS.gene066341:CDS	30.0%
!!	ATATTTTTGTGTGGCATTAC+GGG	+	32540:7242-7261	MS.gene066341:CDS	30.0%
!!	ATCTGATTCTGATTTTAGGA+AGG	+	32540:7176-7195	MS.gene066341:CDS	30.0%
!!	GATATTTTTGTGTGGCATTA+CGG	+	32540:7241-7260	MS.gene066341:CDS	30.0%
!!	TTCCAATGGATATTTTTGTG+TGG	+	32540:7233-7252	MS.gene066341:CDS	30.0%
	ACACTGTTAAGGCTATATCA+GGG	+	32540:7636-7655	MS.gene066341:CDS	35.0%
	ACTCTTCTTCATCAAACCTT+TGG	-	32540:7535-7554	None:intergenic	35.0%
	AGAGAAAAGGCTTATTCCAA+GGG	+	32540:7485-7504	MS.gene066341:CDS	35.0%
	CAGGGATTATTTGTTTGTCA+AGG	-	32540:6975-6994	None:intergenic	35.0%
	CTTCTTACCAAATCAAAAGC+AGG	-	32540:6994-7013	None:intergenic	35.0%
	TACACTGTTAAGGCTATATC+AGG	+	32540:7635-7654	MS.gene066341:CDS	35.0%
	TAGAGAAAAGGCTTATTCCA+AGG	+	32540:7484-7503	MS.gene066341:CDS	35.0%
	TGCCACACAAAAATATCCAT+TGG	-	32540:7238-7257	None:intergenic	35.0%
	TTTGATCCAAAAACGCATCA+CGG	-	32540:7406-7425	None:intergenic	35.0%
	TTTGGCAAAATGGTTTCGAT+GGG	-	32540:6868-6887	None:intergenic	35.0%
!	AACCTTTGGAAAGAAGATAC+TGG	-	32540:7521-7540	None:intergenic	35.0%
!	ATCAACTTTTGCATCCCAAT+GGG	-	32540:7289-7308	None:intergenic	35.0%
!	ATGGGATTTGAAACGATGAT+GGG	-	32540:6850-6869	None:intergenic	35.0%
	ACAGTGACAACTATGTCTTG+AGG	-	32540:6922-6941	None:intergenic	40.0%
	CGAGATCTAGCAATTGAAGT+TGG	-	32540:7063-7082	None:intergenic	40.0%
	CTTTGGCAAAATGGTTTCGA+TGG	-	32540:6869-6888	None:intergenic	40.0%
	GTAATAGCTCTTTGATCGGA+AGG	-	32540:7024-7043	None:intergenic	40.0%
	GTCCAGTATCTTCTTTCCAA+AGG	+	32540:7516-7535	MS.gene066341:CDS	40.0%
	GTTTGTCAAGGCTTGAACAA+AGG	-	32540:6963-6982	None:intergenic	40.0%
	TGGAGGAGATAAAGGGATTA+GGG	+	32540:7202-7221	MS.gene066341:CDS	40.0%
	TTGGATCAAACAGCATGGTT+GGG	+	32540:7416-7435	MS.gene066341:CDS	40.0%
	TTTGGATCAAACAGCATGGT+TGG	+	32540:7415-7434	MS.gene066341:CDS	40.0%
!	AGTTGATGCCTTCAAGAGTT+GGG	+	32540:7302-7321	MS.gene066341:CDS	40.0%
!	CATCAACTTTTGCATCCCAA+TGG	-	32540:7290-7309	None:intergenic	40.0%
!	GATGGGATTTGAAACGATGA+TGG	-	32540:6851-6870	None:intergenic	40.0%
!	TTTTGCATCCCAATGGGATT+TGG	-	32540:7283-7302	None:intergenic	40.0%
!!	AAGTTGATGCCTTCAAGAGT+TGG	+	32540:7301-7320	MS.gene066341:CDS	40.0%
!!	AGGAAGCATCTACACTGTTA+AGG	+	32540:7625-7644	MS.gene066341:CDS	40.0%
!!	CGTTTTTGGATCAAACAGCA+TGG	+	32540:7411-7430	MS.gene066341:CDS	40.0%
!!	GAAAGCCTAGCTTTATGCTA+CGG	+	32540:7361-7380	MS.gene066341:CDS	40.0%
!!	TAGCTTTATGCTACGGTCTA+GGG	+	32540:7368-7387	MS.gene066341:CDS	40.0%
!!	TTCTGATTTTAGGAAGGCTG+TGG	+	32540:7182-7201	MS.gene066341:CDS	40.0%
	AAGGCTGTGGAGGAGATAAA+GGG	+	32540:7195-7214	MS.gene066341:CDS	45.0%
	AGAACAACCCCAACTCTTGA+AGG	-	32540:7313-7332	None:intergenic	45.0%
	AGGCTTGAACAAAGGAAACG+AGG	-	32540:6955-6974	None:intergenic	45.0%
	CTAGACCGTAGCATAAAGCT+AGG	-	32540:7369-7388	None:intergenic	45.0%
	CTGTTAAGGCTATATCAGGG+AGG	+	32540:7639-7658	MS.gene066341:CDS	45.0%
	GGCTATCTCCAAATCCCATT+GGG	+	32540:7272-7291	MS.gene066341:CDS	45.0%
	GGCTTGAACAAAGGAAACGA+GGG	-	32540:6954-6973	None:intergenic	45.0%
	GTGGAGGAGATAAAGGGATT+AGG	+	32540:7201-7220	MS.gene066341:CDS	45.0%
	GTTGATGCCTTCAAGAGTTG+GGG	+	32540:7303-7322	MS.gene066341:CDS	45.0%
	TGGCTATCTCCAAATCCCAT+TGG	+	32540:7271-7290	MS.gene066341:CDS	45.0%
	TTAGGGTTTCACCCTTCCAA+TGG	+	32540:7219-7238	MS.gene066341:CDS	45.0%
!	TCAATGCCGTGATGCGTTTT+TGG	+	32540:7397-7416	MS.gene066341:CDS	45.0%
!	TGTGGCATTACGGGCTAAAA+TGG	+	32540:7251-7270	MS.gene066341:CDS	45.0%
!!	CTAGCTTTATGCTACGGTCT+AGG	+	32540:7367-7386	MS.gene066341:CDS	45.0%
!!	GGATTTGAAACGATGATGGG+TGG	-	32540:6847-6866	None:intergenic	45.0%
!!	TGATTTTAGGAAGGCTGTGG+AGG	+	32540:7185-7204	MS.gene066341:CDS	45.0%
	GAAGGCTGTGGAGGAGATAA+AGG	+	32540:7194-7213	MS.gene066341:CDS	50.0%
	TACTGGACAACAGAAGCCCT+TGG	-	32540:7504-7523	None:intergenic	50.0%
!	GGAGCTTTCAAGAGCACGAA+AGG	-	32540:7444-7463	None:intergenic	50.0%
!!	GTCTTGAGGAGAAGCACCTT+TGG	-	32540:6908-6927	None:intergenic	50.0%
	GGGTGGAATCCTGCGAATGA+TGG	-	32540:6830-6849	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
32540	gene	6820	7668	6820	ID=MS.gene066341
32540	mRNA	6820	7668	6820	ID=MS.gene066341.t1;Parent=MS.gene066341
32540	exon	6820	7668	6820	ID=MS.gene066341.t1.exon1;Parent=MS.gene066341.t1
32540	CDS	6820	7668	6820	ID=cds.MS.gene066341.t1;Parent=MS.gene066341.t1

Gene Sequence

>MS.gene066341

ATACAAACCATCATTCGCAGGATTCCACCCATCATCGTTTCAAATCCCATCGAAACCATTTTGCCAAAGTTTCAATTTTTAGCTTCCAAAGGTGCTTCTCCTCAAGACATAGTTGTCACTGTCACTAAAAGCCCTCGTTTCCTTTGTTCAAGCCTTGACAAACAAATAATCCCTGCTTTTGATTTGGTAAGAAGTTTCTGTCCTTCCGATCAAAGAGCTATTACTATAATAAATTCTTATCCAACTTCAATTGCTAGATCTCGCATGAAACCAAATGTTCATTTTTTGCTTGATTTTGGAGTCAATCCCTCAAGTATTTACTATTTGCTTAGTAGTAGACCTTCTATATTCTGTATATCTGATTCTGATTTTAGGAAGGCTGTGGAGGAGATAAAGGGATTAGGGTTTCACCCTTCCAATGGATATTTTTGTGTGGCATTACGGGCTAAAATGGCTATCTCCAAATCCCATTGGGATGCAAAAGTTGATGCCTTCAAGAGTTGGGGTTGTTCTGAAGATGATATTTTGACTGCATTTAAAAGAAAGCCTAGCTTTATGCTACGGTCTAGGGACAAACTCAATGCCGTGATGCGTTTTTGGATCAAACAGCATGGTTGGGATCCTTTCGTGCTCTTGAAAGCTCCAGATATTTTCGGATTTAGTATAGAGAAAAGGCTTATTCCAAGGGCTTCTGTTGTCCAGTATCTTCTTTCCAAAGGTTTGATGAAGAAGAGTGCTAGCTTATATACACCATTTTCTTTGACTGATGAGTTGTTCCTGAAAAGATATGTGAATTATTTTGAGGAGGAAGCATCTACACTGTTAAGGCTATATCAGGGAGGATGCTAG

Protein sequence

>MS.gene066341.t1

IQTIIRRIPPIIVSNPIETILPKFQFLASKGASPQDIVVTVTKSPRFLCSSLDKQIIPAFDLVRSFCPSDQRAITIINSYPTSIARSRMKPNVHFLLDFGVNPSSIYYLLSSRPSIFCISDSDFRKAVEEIKGLGFHPSNGYFCVALRAKMAISKSHWDAKVDAFKSWGCSEDDILTAFKRKPSFMLRSRDKLNAVMRFWIKQHGWDPFVLLKAPDIFGFSIEKRLIPRASVVQYLLSKGLMKKSASLYTPFSLTDELFLKRYVNYFEEEASTLLRLYQGGC