Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066487.t1 | XP_003629092.1 | 68.1 | 226 | 71 | 1 | 1 | 226 | 1 | 225 | 1.20E-74 | 289.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066487.t1 | Q8S9H7 | 55.3 | 47 | 21 | 0 | 103 | 149 | 132 | 178 | 2.6e-09 | 63.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066487.t1 | G7L8N4 | 68.1 | 226 | 71 | 1 | 1 | 226 | 1 | 225 | 8.7e-75 | 289.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene066487.t1 | TF | MYB-related |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066487.t1 | MTR_8g073050 | 86.726 | 226 | 29 | 1 | 1 | 226 | 1 | 225 | 2.55e-121 | 343 |
MS.gene066487.t1 | MTR_6g043480 | 58.621 | 232 | 87 | 6 | 1 | 225 | 1 | 230 | 1.99e-69 | 212 |
MS.gene066487.t1 | MTR_6g043490 | 57.940 | 233 | 87 | 6 | 1 | 225 | 1 | 230 | 1.72e-66 | 205 |
MS.gene066487.t1 | MTR_8g072990 | 51.600 | 250 | 86 | 9 | 1 | 224 | 1 | 241 | 6.48e-61 | 191 |
MS.gene066487.t1 | MTR_5g027570 | 39.726 | 73 | 44 | 0 | 94 | 166 | 83 | 155 | 2.30e-14 | 70.1 |
MS.gene066487.t1 | MTR_1g048660 | 42.667 | 75 | 39 | 1 | 104 | 174 | 13 | 87 | 3.82e-13 | 63.5 |
MS.gene066487.t1 | MTR_8g063870 | 36.634 | 101 | 47 | 2 | 90 | 173 | 68 | 168 | 7.55e-13 | 66.6 |
MS.gene066487.t1 | MTR_7g067080 | 36.735 | 98 | 53 | 3 | 57 | 149 | 93 | 186 | 8.00e-13 | 66.6 |
MS.gene066487.t1 | MTR_4g111975 | 49.057 | 53 | 27 | 0 | 100 | 152 | 135 | 187 | 2.18e-12 | 65.5 |
MS.gene066487.t1 | MTR_3g462790 | 53.191 | 47 | 22 | 0 | 103 | 149 | 147 | 193 | 2.44e-12 | 65.5 |
MS.gene066487.t1 | MTR_5g081860 | 53.191 | 47 | 22 | 0 | 103 | 149 | 125 | 171 | 2.69e-12 | 64.7 |
MS.gene066487.t1 | MTR_5g069710 | 35.644 | 101 | 48 | 3 | 57 | 149 | 87 | 178 | 2.77e-12 | 65.1 |
MS.gene066487.t1 | MTR_4g100630 | 46.667 | 60 | 32 | 0 | 90 | 149 | 82 | 141 | 3.62e-12 | 65.1 |
MS.gene066487.t1 | MTR_2g100930 | 55.319 | 47 | 21 | 0 | 103 | 149 | 109 | 155 | 7.23e-12 | 64.3 |
MS.gene066487.t1 | MTR_1g111830 | 39.326 | 89 | 48 | 2 | 96 | 184 | 117 | 199 | 1.58e-11 | 62.4 |
MS.gene066487.t1 | MTR_6g092540 | 40.244 | 82 | 37 | 2 | 103 | 173 | 97 | 177 | 3.79e-11 | 61.6 |
MS.gene066487.t1 | MTR_8g101650 | 50.980 | 51 | 25 | 0 | 103 | 153 | 105 | 155 | 5.96e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066487.t1 | AT5G58900 | 55.319 | 47 | 21 | 0 | 103 | 149 | 141 | 187 | 8.81e-13 | 66.6 |
MS.gene066487.t1 | AT5G05790 | 46.774 | 62 | 32 | 1 | 90 | 150 | 117 | 178 | 1.09e-12 | 66.2 |
MS.gene066487.t1 | AT5G05790 | 46.774 | 62 | 32 | 1 | 90 | 150 | 117 | 178 | 1.09e-12 | 66.2 |
MS.gene066487.t1 | AT3G16350 | 51.724 | 58 | 27 | 1 | 93 | 149 | 126 | 183 | 1.86e-12 | 66.2 |
MS.gene066487.t1 | AT2G38090 | 28.276 | 145 | 88 | 2 | 17 | 149 | 47 | 187 | 2.28e-12 | 65.5 |
MS.gene066487.t1 | AT3G11280 | 52.083 | 48 | 23 | 0 | 103 | 150 | 127 | 174 | 2.28e-12 | 65.1 |
MS.gene066487.t1 | AT3G11280 | 52.083 | 48 | 23 | 0 | 103 | 150 | 127 | 174 | 2.28e-12 | 65.1 |
MS.gene066487.t1 | AT1G49010 | 49.057 | 53 | 27 | 0 | 100 | 152 | 131 | 183 | 2.77e-12 | 65.1 |
MS.gene066487.t1 | AT5G08520 | 40.909 | 66 | 39 | 0 | 87 | 152 | 102 | 167 | 6.37e-12 | 63.9 |
MS.gene066487.t1 | AT1G19000 | 50.909 | 55 | 26 | 1 | 96 | 149 | 94 | 148 | 1.57e-11 | 62.8 |
MS.gene066487.t1 | AT1G19000 | 50.909 | 55 | 26 | 1 | 96 | 149 | 94 | 148 | 1.57e-11 | 62.8 |
MS.gene066487.t1 | AT5G01200 | 55.319 | 47 | 21 | 0 | 103 | 149 | 146 | 192 | 2.14e-11 | 62.4 |
MS.gene066487.t1 | AT5G04760 | 44.615 | 65 | 34 | 1 | 104 | 168 | 100 | 162 | 4.37e-11 | 60.8 |
MS.gene066487.t1 | AT5G56840 | 41.538 | 65 | 38 | 0 | 103 | 167 | 91 | 155 | 7.92e-11 | 60.5 |
Find 75 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTTAAGAACCGTTGATATT+TGG | 0.199296 | 8.2:-31225383 | None:intergenic |
TCATCATCTGTTCCATATTA+TGG | 0.206416 | 8.2:+31226224 | MS.gene066487:CDS |
ATACATAGTTCTTAGCAATT+TGG | 0.264680 | 8.2:-31226064 | None:intergenic |
GGTGTTGGTGGTGATGGATT+TGG | 0.296123 | 8.2:-31225275 | None:intergenic |
CTAGCTTCTCCTCCATAATA+TGG | 0.305605 | 8.2:-31226236 | None:intergenic |
GCCTAGCTCCATTTGAGAAT+TGG | 0.318293 | 8.2:-31225428 | None:intergenic |
AGTTGATTTGGAACTTCGTT+TGG | 0.333131 | 8.2:+31226331 | MS.gene066487:CDS |
GGTGTTGATGGAGGTGAGTC+AGG | 0.358089 | 8.2:-31225183 | None:intergenic |
CTGATGGGGCTGATCAAGTA+TGG | 0.367591 | 8.2:+31226026 | MS.gene066487:CDS |
CCTAGCTCCATTTGAGAATT+GGG | 0.375616 | 8.2:-31225427 | None:intergenic |
TGGATTTGGTGGTGAAGATT+AGG | 0.385439 | 8.2:-31225261 | None:intergenic |
GCTTGCTCCGTTGTTGTTGT+TGG | 0.386799 | 8.2:-31226270 | None:intergenic |
ACTCTGCTTCCAAGAGTAAC+AGG | 0.390450 | 8.2:+31226198 | MS.gene066487:CDS |
TAGTTTGGTGTTGGTGGTGA+TGG | 0.391425 | 8.2:-31225281 | None:intergenic |
TCTCAAATGGAGCTAGGCTC+AGG | 0.396903 | 8.2:+31225433 | MS.gene066487:CDS |
GGATTTGGTGGTGAAGATTA+GGG | 0.406181 | 8.2:-31225260 | None:intergenic |
TGATGAGTTCCTGTTACTCT+TGG | 0.406940 | 8.2:-31226207 | None:intergenic |
TTTGAGAATTGGGATGTGTT+TGG | 0.407144 | 8.2:-31225417 | None:intergenic |
GCTGTGATACATGCCAGATT+GGG | 0.411636 | 8.2:-31225361 | None:intergenic |
GATAAAGATACGGGTGTTGA+TGG | 0.416245 | 8.2:-31225195 | None:intergenic |
GGCTGTGATACATGCCAGAT+TGG | 0.416389 | 8.2:-31225362 | None:intergenic |
TGGTGATGGAGGAGTTGATT+TGG | 0.416843 | 8.2:+31226319 | MS.gene066487:CDS |
GTAAGATCAATGATCTCAAT+AGG | 0.418602 | 8.2:-31225153 | None:intergenic |
GTTGATTTGGAACTTCGTTT+GGG | 0.424734 | 8.2:+31226332 | MS.gene066487:CDS |
CTACCTAGTGCTTCTGGTGA+TGG | 0.425886 | 8.2:+31226305 | MS.gene066487:CDS |
ATGACTCTACCTAGTGCTTC+TGG | 0.429378 | 8.2:+31226299 | MS.gene066487:CDS |
GTGGTACAAACAAGGTAGTT+TGG | 0.433356 | 8.2:-31225296 | None:intergenic |
GAGCTAGGCTCAGGGTTCCT+TGG | 0.446694 | 8.2:+31225442 | MS.gene066487:CDS |
TAGAAACGGGAGCAAAGTTA+AGG | 0.448465 | 8.2:-31225233 | None:intergenic |
GCTACCGGTTGGCCCCAATC+TGG | 0.452184 | 8.2:+31225348 | MS.gene066487:CDS |
TCAAGTATGGAAAAGGGAAA+TGG | 0.454658 | 8.2:+31226039 | MS.gene066487:CDS |
AAGATTAGGGTTGGTAGAAA+CGG | 0.455787 | 8.2:-31225247 | None:intergenic |
CTCTTGGAAGCAGAGTTGTT+GGG | 0.457547 | 8.2:-31226191 | None:intergenic |
GATGTGTTTGGTTCAGTTGA+CGG | 0.458493 | 8.2:-31225405 | None:intergenic |
ATTTGAGGGGACTCAAATCC+TGG | 0.458680 | 8.2:-31225324 | None:intergenic |
GGCCAACCGGTAGCAATTTG+AGG | 0.458848 | 8.2:-31225339 | None:intergenic |
ACTCTTGGAAGCAGAGTTGT+TGG | 0.461350 | 8.2:-31226192 | None:intergenic |
GGGCTGATCAAGTATGGAAA+AGG | 0.470163 | 8.2:+31226032 | MS.gene066487:CDS |
GTTGGTGGTGATGGATTTGG+TGG | 0.475694 | 8.2:-31225272 | None:intergenic |
CATGCCAGATTGGGGCCAAC+CGG | 0.482065 | 8.2:-31225352 | None:intergenic |
GACTCAAATCCTGGAGGTGG+TGG | 0.483319 | 8.2:-31225315 | None:intergenic |
CCTAAAACCATGCACAAAAG+TGG | 0.488465 | 8.2:-31226147 | None:intergenic |
GGAGCAAAGTTAAGGATTGT+TGG | 0.489039 | 8.2:-31225225 | None:intergenic |
AGATTAGGGTTGGTAGAAAC+GGG | 0.494754 | 8.2:-31225246 | None:intergenic |
CCACAACAAGTTAAAAGCTA+TGG | 0.499837 | 8.2:+31226098 | MS.gene066487:CDS |
GAGTCCCCTCAAATTGCTAC+CGG | 0.500058 | 8.2:+31225333 | MS.gene066487:CDS |
AACACATCCCAATTCTCAAA+TGG | 0.501889 | 8.2:+31225420 | MS.gene066487:CDS |
GCCAACCGGTAGCAATTTGA+GGG | 0.514459 | 8.2:-31225338 | None:intergenic |
CCTAGTGCTTCTGGTGATGG+AGG | 0.523054 | 8.2:+31226308 | MS.gene066487:CDS |
GTGTTGATGGAGGTGAGTCA+GGG | 0.531660 | 8.2:-31225182 | None:intergenic |
AGCAACACCAACAACAACAA+CGG | 0.538127 | 8.2:+31226263 | MS.gene066487:CDS |
TTGTTTGTACCACCACCTCC+AGG | 0.546643 | 8.2:+31225306 | MS.gene066487:CDS |
ACAAGGTAGTTTGGTGTTGG+TGG | 0.546899 | 8.2:-31225287 | None:intergenic |
TGGTACATTAGATAAAGATA+CGG | 0.550576 | 8.2:-31225205 | None:intergenic |
CAAACAAGGTAGTTTGGTGT+TGG | 0.559413 | 8.2:-31225290 | None:intergenic |
CCCCTCAAATTGCTACCGGT+TGG | 0.559490 | 8.2:+31225337 | MS.gene066487:CDS |
AAACCATGCACAAAAGTGGC+TGG | 0.562701 | 8.2:-31226143 | None:intergenic |
AGAAGCACTAGGTAGAGTCA+TGG | 0.563013 | 8.2:-31226297 | None:intergenic |
CCCAATTCTCAAATGGAGCT+AGG | 0.570237 | 8.2:+31225427 | MS.gene066487:CDS |
AAAGATACGGGTGTTGATGG+AGG | 0.573043 | 8.2:-31225192 | None:intergenic |
GGGGACTCAAATCCTGGAGG+TGG | 0.579811 | 8.2:-31225318 | None:intergenic |
TTGGTGGTGAAGATTAGGGT+TGG | 0.582165 | 8.2:-31225256 | None:intergenic |
GGCTGATCAAGTATGGAAAA+GGG | 0.582167 | 8.2:+31226033 | MS.gene066487:CDS |
CCTCCATCACCAGAAGCACT+AGG | 0.589074 | 8.2:-31226308 | None:intergenic |
GGTACATTAGATAAAGATAC+GGG | 0.591571 | 8.2:-31225204 | None:intergenic |
CTCAAATGGAGCTAGGCTCA+GGG | 0.594472 | 8.2:+31225434 | MS.gene066487:CDS |
TCATGCTCTAATTGACTCCA+AGG | 0.607425 | 8.2:-31225459 | None:intergenic |
TGGAGGTGGTGGTACAAACA+AGG | 0.619969 | 8.2:-31225304 | None:intergenic |
TGTTGATGGAGGTGAGTCAG+GGG | 0.623721 | 8.2:-31225181 | None:intergenic |
CATGCACAAAAGTGGCTGGT+AGG | 0.630767 | 8.2:-31226139 | None:intergenic |
CTGTGATACATGCCAGATTG+GGG | 0.653088 | 8.2:-31225360 | None:intergenic |
TCATCTGTTCCATATTATGG+AGG | 0.666793 | 8.2:+31226227 | MS.gene066487:CDS |
GTATCACAGCCAAATATCAA+CGG | 0.672262 | 8.2:+31225374 | MS.gene066487:CDS |
TGAGGGGACTCAAATCCTGG+AGG | 0.739253 | 8.2:-31225321 | None:intergenic |
CCAACCGGTAGCAATTTGAG+GGG | 0.766266 | 8.2:-31225337 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAAGTTATCATTAAATT+TGG | - | chr8.2:31225585-31225604 | None:intergenic | 10.0% |
!! | ATAAAATTAGTCATTAAATT+CGG | - | chr8.2:31225823-31225842 | None:intergenic | 10.0% |
!! | ATATCAATAGTAAAATTTAA+CGG | - | chr8.2:31225964-31225983 | None:intergenic | 10.0% |
!!! | ATTATTTTATAATCTATGAA+AGG | - | chr8.2:31225920-31225939 | None:intergenic | 10.0% |
!!! | TTATTTTATAATCTATGAAA+GGG | - | chr8.2:31225919-31225938 | None:intergenic | 10.0% |
!! | CTAAAAGTTTAATACAAAAT+TGG | - | chr8.2:31225797-31225816 | None:intergenic | 15.0% |
!! | TATCAATAGTAAAATTTAAC+GGG | - | chr8.2:31225963-31225982 | None:intergenic | 15.0% |
!!! | TATTTTAGCTTATTTCTGAT+GGG | + | chr8.2:31226011-31226030 | MS.gene066487:intron | 20.0% |
!!! | TTATTTTAGCTTATTTCTGA+TGG | + | chr8.2:31226010-31226029 | MS.gene066487:intron | 20.0% |
! | AAATTGCGATAAAAATTGAG+AGG | + | chr8.2:31225557-31225576 | MS.gene066487:intron | 25.0% |
! | ATAATCTATGAAAGGGTAAT+TGG | - | chr8.2:31225912-31225931 | None:intergenic | 25.0% |
! | ATACATAGTTCTTAGCAATT+TGG | - | chr8.2:31226067-31226086 | None:intergenic | 25.0% |
! | GTTGAATAACCACAAAAATT+TGG | + | chr8.2:31225746-31225765 | MS.gene066487:intron | 25.0% |
! | TGGTACATTAGATAAAGATA+CGG | - | chr8.2:31225208-31225227 | None:intergenic | 25.0% |
!! | TTTCTTTCTCCAAATTTTTG+TGG | - | chr8.2:31225758-31225777 | None:intergenic | 25.0% |
!!! | ATTTTAGCTTATTTCTGATG+GGG | + | chr8.2:31226012-31226031 | MS.gene066487:intron | 25.0% |
AAATAACTGCGAATTTAGTG+GGG | - | chr8.2:31225676-31225695 | None:intergenic | 30.0% | |
GAAATAACTGCGAATTTAGT+GGG | - | chr8.2:31225677-31225696 | None:intergenic | 30.0% | |
GGTACATTAGATAAAGATAC+GGG | - | chr8.2:31225207-31225226 | None:intergenic | 30.0% | |
GTAAGATCAATGATCTCAAT+AGG | - | chr8.2:31225156-31225175 | None:intergenic | 30.0% | |
GTTTAAGAACCGTTGATATT+TGG | - | chr8.2:31225386-31225405 | None:intergenic | 30.0% | |
TCATCATCTGTTCCATATTA+TGG | + | chr8.2:31226224-31226243 | MS.gene066487:CDS | 30.0% | |
TGAAATAACTGCGAATTTAG+TGG | - | chr8.2:31225678-31225697 | None:intergenic | 30.0% | |
! | ATTGGTGTAGAAGTGATTTT+AGG | - | chr8.2:31225894-31225913 | None:intergenic | 30.0% |
AACACATCCCAATTCTCAAA+TGG | + | chr8.2:31225420-31225439 | MS.gene066487:CDS | 35.0% | |
CCACAACAAGTTAAAAGCTA+TGG | + | chr8.2:31226098-31226117 | MS.gene066487:CDS | 35.0% | |
GTATCACAGCCAAATATCAA+CGG | + | chr8.2:31225374-31225393 | MS.gene066487:CDS | 35.0% | |
TCAAGTATGGAAAAGGGAAA+TGG | + | chr8.2:31226039-31226058 | MS.gene066487:CDS | 35.0% | |
TCATCTGTTCCATATTATGG+AGG | + | chr8.2:31226227-31226246 | MS.gene066487:CDS | 35.0% | |
TTTGAGAATTGGGATGTGTT+TGG | - | chr8.2:31225420-31225439 | None:intergenic | 35.0% | |
!! | AAGATTAGGGTTGGTAGAAA+CGG | - | chr8.2:31225250-31225269 | None:intergenic | 35.0% |
!! | AGTTGATTTGGAACTTCGTT+TGG | + | chr8.2:31226331-31226350 | MS.gene066487:CDS | 35.0% |
!! | GTTGATTTGGAACTTCGTTT+GGG | + | chr8.2:31226332-31226351 | MS.gene066487:CDS | 35.0% |
!!! | CCATAGCTTTTAACTTGTTG+TGG | - | chr8.2:31226101-31226120 | None:intergenic | 35.0% |
AGCAACACCAACAACAACAA+CGG | + | chr8.2:31226263-31226282 | MS.gene066487:CDS | 40.0% | |
CCTAAAACCATGCACAAAAG+TGG | - | chr8.2:31226150-31226169 | None:intergenic | 40.0% | |
CCTAGCTCCATTTGAGAATT+GGG | - | chr8.2:31225430-31225449 | None:intergenic | 40.0% | |
CTAGCTTCTCCTCCATAATA+TGG | - | chr8.2:31226239-31226258 | None:intergenic | 40.0% | |
GGAGCAAAGTTAAGGATTGT+TGG | - | chr8.2:31225228-31225247 | None:intergenic | 40.0% | |
GGCTGATCAAGTATGGAAAA+GGG | + | chr8.2:31226033-31226052 | MS.gene066487:CDS | 40.0% | |
GTGGTACAAACAAGGTAGTT+TGG | - | chr8.2:31225299-31225318 | None:intergenic | 40.0% | |
TAGAAACGGGAGCAAAGTTA+AGG | - | chr8.2:31225236-31225255 | None:intergenic | 40.0% | |
TGATGAGTTCCTGTTACTCT+TGG | - | chr8.2:31226210-31226229 | None:intergenic | 40.0% | |
! | GATGTGTTTGGTTCAGTTGA+CGG | - | chr8.2:31225408-31225427 | None:intergenic | 40.0% |
! | TCATGCTCTAATTGACTCCA+AGG | - | chr8.2:31225462-31225481 | None:intergenic | 40.0% |
!! | AGATTAGGGTTGGTAGAAAC+GGG | - | chr8.2:31225249-31225268 | None:intergenic | 40.0% |
!! | CAAACAAGGTAGTTTGGTGT+TGG | - | chr8.2:31225293-31225312 | None:intergenic | 40.0% |
!! | CCACTTTTGTGCATGGTTTT+AGG | + | chr8.2:31226147-31226166 | MS.gene066487:CDS | 40.0% |
!! | GATAAAGATACGGGTGTTGA+TGG | - | chr8.2:31225198-31225217 | None:intergenic | 40.0% |
!! | GGATTTGGTGGTGAAGATTA+GGG | - | chr8.2:31225263-31225282 | None:intergenic | 40.0% |
!! | TGGATTTGGTGGTGAAGATT+AGG | - | chr8.2:31225264-31225283 | None:intergenic | 40.0% |
AAACCATGCACAAAAGTGGC+TGG | - | chr8.2:31226146-31226165 | None:intergenic | 45.0% | |
ACTCTGCTTCCAAGAGTAAC+AGG | + | chr8.2:31226198-31226217 | MS.gene066487:CDS | 45.0% | |
ACTCTTGGAAGCAGAGTTGT+TGG | - | chr8.2:31226195-31226214 | None:intergenic | 45.0% | |
ATGACTCTACCTAGTGCTTC+TGG | + | chr8.2:31226299-31226318 | MS.gene066487:CDS | 45.0% | |
ATTTGAGGGGACTCAAATCC+TGG | - | chr8.2:31225327-31225346 | None:intergenic | 45.0% | |
CCCAATTCTCAAATGGAGCT+AGG | + | chr8.2:31225427-31225446 | MS.gene066487:CDS | 45.0% | |
CTCTTGGAAGCAGAGTTGTT+GGG | - | chr8.2:31226194-31226213 | None:intergenic | 45.0% | |
CTGTGATACATGCCAGATTG+GGG | - | chr8.2:31225363-31225382 | None:intergenic | 45.0% | |
GCCTAGCTCCATTTGAGAAT+TGG | - | chr8.2:31225431-31225450 | None:intergenic | 45.0% | |
GCTGTGATACATGCCAGATT+GGG | - | chr8.2:31225364-31225383 | None:intergenic | 45.0% | |
GGGCTGATCAAGTATGGAAA+AGG | + | chr8.2:31226032-31226051 | MS.gene066487:CDS | 45.0% | |
!! | AAAGATACGGGTGTTGATGG+AGG | - | chr8.2:31225195-31225214 | None:intergenic | 45.0% |
!! | ACAAGGTAGTTTGGTGTTGG+TGG | - | chr8.2:31225290-31225309 | None:intergenic | 45.0% |
!! | AGAAGCACTAGGTAGAGTCA+TGG | - | chr8.2:31226300-31226319 | None:intergenic | 45.0% |
!! | TAGTTTGGTGTTGGTGGTGA+TGG | - | chr8.2:31225284-31225303 | None:intergenic | 45.0% |
!! | TGGTGATGGAGGAGTTGATT+TGG | + | chr8.2:31226319-31226338 | MS.gene066487:CDS | 45.0% |
!! | TTGGTGGTGAAGATTAGGGT+TGG | - | chr8.2:31225259-31225278 | None:intergenic | 45.0% |
CATGCACAAAAGTGGCTGGT+AGG | - | chr8.2:31226142-31226161 | None:intergenic | 50.0% | |
CCAACCGGTAGCAATTTGAG+GGG | - | chr8.2:31225340-31225359 | None:intergenic | 50.0% | |
CTACCTAGTGCTTCTGGTGA+TGG | + | chr8.2:31226305-31226324 | MS.gene066487:CDS | 50.0% | |
CTCAAATGGAGCTAGGCTCA+GGG | + | chr8.2:31225434-31225453 | MS.gene066487:CDS | 50.0% | |
CTGATGGGGCTGATCAAGTA+TGG | + | chr8.2:31226026-31226045 | MS.gene066487:CDS | 50.0% | |
GAGTCCCCTCAAATTGCTAC+CGG | + | chr8.2:31225333-31225352 | MS.gene066487:CDS | 50.0% | |
GCCAACCGGTAGCAATTTGA+GGG | - | chr8.2:31225341-31225360 | None:intergenic | 50.0% | |
GGCTGTGATACATGCCAGAT+TGG | - | chr8.2:31225365-31225384 | None:intergenic | 50.0% | |
TCTCAAATGGAGCTAGGCTC+AGG | + | chr8.2:31225433-31225452 | MS.gene066487:CDS | 50.0% | |
TTGTTTGTACCACCACCTCC+AGG | + | chr8.2:31225306-31225325 | MS.gene066487:CDS | 50.0% | |
! | GCTTGCTCCGTTGTTGTTGT+TGG | - | chr8.2:31226273-31226292 | None:intergenic | 50.0% |
! | GTGTTGATGGAGGTGAGTCA+GGG | - | chr8.2:31225185-31225204 | None:intergenic | 50.0% |
! | TGGAGGTGGTGGTACAAACA+AGG | - | chr8.2:31225307-31225326 | None:intergenic | 50.0% |
! | TGTTGATGGAGGTGAGTCAG+GGG | - | chr8.2:31225184-31225203 | None:intergenic | 50.0% |
!! | GGTGTTGGTGGTGATGGATT+TGG | - | chr8.2:31225278-31225297 | None:intergenic | 50.0% |
!! | GTTGGTGGTGATGGATTTGG+TGG | - | chr8.2:31225275-31225294 | None:intergenic | 50.0% |
!!! | CTACCAGCCACTTTTGTGCA+TGG | + | chr8.2:31226140-31226159 | MS.gene066487:CDS | 50.0% |
CCCCTCAAATTGCTACCGGT+TGG | + | chr8.2:31225337-31225356 | MS.gene066487:CDS | 55.0% | |
GACTCAAATCCTGGAGGTGG+TGG | - | chr8.2:31225318-31225337 | None:intergenic | 55.0% | |
GGCCAACCGGTAGCAATTTG+AGG | - | chr8.2:31225342-31225361 | None:intergenic | 55.0% | |
TGAGGGGACTCAAATCCTGG+AGG | - | chr8.2:31225324-31225343 | None:intergenic | 55.0% | |
!! | CCTAGTGCTTCTGGTGATGG+AGG | + | chr8.2:31226308-31226327 | MS.gene066487:CDS | 55.0% |
!! | CCTCCATCACCAGAAGCACT+AGG | - | chr8.2:31226311-31226330 | None:intergenic | 55.0% |
!! | GGTGTTGATGGAGGTGAGTC+AGG | - | chr8.2:31225186-31225205 | None:intergenic | 55.0% |
CATGCCAGATTGGGGCCAAC+CGG | - | chr8.2:31225355-31225374 | None:intergenic | 60.0% | |
GAGCTAGGCTCAGGGTTCCT+TGG | + | chr8.2:31225442-31225461 | MS.gene066487:CDS | 60.0% | |
GGGGACTCAAATCCTGGAGG+TGG | - | chr8.2:31225321-31225340 | None:intergenic | 60.0% | |
! | GCTACCGGTTGGCCCCAATC+TGG | + | chr8.2:31225348-31225367 | MS.gene066487:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 31225150 | 31226367 | 31225150 | ID=MS.gene066487 |
chr8.2 | mRNA | 31225150 | 31226367 | 31225150 | ID=MS.gene066487.t1;Parent=MS.gene066487 |
chr8.2 | exon | 31225150 | 31225481 | 31225150 | ID=MS.gene066487.t1.exon1;Parent=MS.gene066487.t1 |
chr8.2 | CDS | 31225150 | 31225481 | 31225150 | ID=cds.MS.gene066487.t1;Parent=MS.gene066487.t1 |
chr8.2 | exon | 31226019 | 31226367 | 31226019 | ID=MS.gene066487.t1.exon2;Parent=MS.gene066487.t1 |
chr8.2 | CDS | 31226019 | 31226367 | 31226019 | ID=cds.MS.gene066487.t1;Parent=MS.gene066487.t1 |
Gene Sequence |
Protein sequence |