AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene066711

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene066711.t1 MTR_4g021845 88.584 219 23 1 1 219 1 217 1.42e-142 398
MS.gene066711.t1 MTR_4g021855 83.636 220 34 1 1 220 1 218 7.68e-134 379
MS.gene066711.t1 MTR_4g021760 82.353 221 36 2 1 220 1 219 1.13e-131 374
MS.gene066711.t1 MTR_4g021790 81.818 220 38 1 1 220 1 218 8.45e-130 367
MS.gene066711.t1 MTR_5g055260 60.000 220 59 5 1 220 1 191 2.67e-81 244
MS.gene066711.t1 MTR_4g023980 79.137 139 27 1 55 193 35 171 1.41e-77 231
MS.gene066711.t1 MTR_1g032570 44.444 243 102 5 10 221 11 251 9.64e-64 209
MS.gene066711.t1 MTR_6g045327 46.262 214 109 4 10 221 14 223 2.79e-54 179
MS.gene066711.t1 MTR_3g086100 40.167 239 113 4 10 220 13 249 3.91e-54 182
MS.gene066711.t1 MTR_8g079940 40.336 238 114 4 9 220 24 259 1.00e-53 181
MS.gene066711.t1 MTR_4g121020 40.506 237 113 3 10 220 31 265 2.67e-53 182
MS.gene066711.t1 MTR_4g121020 40.506 237 113 3 10 220 31 265 2.82e-53 182
MS.gene066711.t1 MTR_2g034960 40.851 235 113 3 10 220 29 261 1.33e-52 179
MS.gene066711.t1 MTR_8g105600 39.442 251 130 3 4 234 3 251 1.05e-51 176
MS.gene066711.t1 MTR_1g013170 38.750 240 121 4 7 220 2 241 9.84e-49 167
MS.gene066711.t1 MTR_4g131600 38.034 234 122 4 9 220 19 251 2.49e-47 165
MS.gene066711.t1 MTR_7g117705 36.250 240 127 3 7 220 2 241 8.25e-46 159
MS.gene066711.t1 MTR_3g106220 36.100 241 124 3 10 220 8 248 1.55e-44 158
MS.gene066711.t1 MTR_8g093040 40.678 236 117 7 1 231 1 218 1.78e-43 148
MS.gene066711.t1 MTR_1g013180 37.083 240 125 4 7 220 153 392 1.99e-43 155
MS.gene066711.t1 MTR_2g450070 34.146 246 127 4 10 220 18 263 6.02e-42 151
MS.gene066711.t1 MTR_2g450070 34.146 246 127 4 10 220 18 263 6.65e-42 151
MS.gene066711.t1 MTR_6g016850 43.750 160 86 2 4 161 3 160 1.64e-41 139
MS.gene066711.t1 MTR_4g131570 34.034 238 129 4 10 220 17 253 4.25e-41 148
MS.gene066711.t1 MTR_4g131580 34.894 235 128 4 10 220 17 250 5.97e-40 145
MS.gene066711.t1 MTR_3g102590 37.264 212 104 4 10 219 8 192 1.23e-39 135
MS.gene066711.t1 MTR_3g102590 37.089 213 105 4 10 220 8 193 1.37e-39 137
MS.gene066711.t1 MTR_1g032570 40.217 184 78 4 68 221 1 182 7.13e-39 141
MS.gene066711.t1 MTR_3g102600 34.685 222 105 4 4 224 4 186 9.45e-38 130
MS.gene066711.t1 MTR_3g102600 35.321 218 101 4 4 220 4 182 1.08e-37 131
MS.gene066711.t1 MTR_3g086100 38.333 180 82 3 68 220 1 178 7.81e-36 132
MS.gene066711.t1 MTR_7g026400 36.508 189 107 4 45 220 19 207 6.53e-32 122
MS.gene066711.t1 MTR_0450s0040 30.876 217 139 3 12 220 6 219 2.96e-31 117
MS.gene066711.t1 MTR_3g102600 34.911 169 73 2 52 220 2 133 1.67e-30 111
MS.gene066711.t1 MTR_3g102600 34.104 173 77 2 52 224 2 137 2.34e-30 110
MS.gene066711.t1 MTR_4g121020 37.342 158 72 2 88 220 6 161 5.65e-26 105
MS.gene066711.t1 MTR_1g013160 33.784 148 73 3 71 193 1 148 3.34e-19 81.6
MS.gene066711.t1 MTR_8g032710 26.190 252 142 8 12 220 19 269 1.13e-18 84.7
MS.gene066711.t1 MTR_5g041350 55.769 52 22 1 170 220 15 66 9.50e-14 70.1
MS.gene066711.t1 MTR_2g090675 41.176 85 48 2 138 220 127 211 1.71e-13 69.3
MS.gene066711.t1 MTR_6g032990 55.769 52 22 1 170 220 42 93 4.93e-13 68.2
MS.gene066711.t1 MTR_2g086450 53.846 52 23 1 170 220 45 96 2.20e-12 66.2
MS.gene066711.t1 MTR_4g078810 48.077 52 27 0 169 220 157 208 5.20e-12 65.1
MS.gene066711.t1 MTR_4g098870 49.057 53 27 0 169 221 309 361 2.74e-11 63.2
MS.gene066711.t1 MTR_4g098870 49.057 53 27 0 169 221 329 381 2.96e-11 63.2
MS.gene066711.t1 MTR_4g098870 49.057 53 27 0 169 221 309 361 3.26e-11 62.8
MS.gene066711.t1 MTR_4g098870 49.057 53 27 0 169 221 348 400 3.37e-11 62.8
MS.gene066711.t1 MTR_4g098870 49.057 53 27 0 169 221 329 381 3.42e-11 62.8
MS.gene066711.t1 MTR_6g444980 46.154 65 33 2 170 233 35 98 6.70e-11 61.6
MS.gene066711.t1 MTR_6g444980 44.928 69 36 2 166 233 31 98 8.27e-11 61.2
MS.gene066711.t1 MTR_7g089010 50.000 52 26 0 169 220 90 141 8.53e-11 60.8
MS.gene066711.t1 MTR_5g014040 29.508 122 81 3 10 129 14 132 8.94e-11 61.6
MS.gene066711.t1 MTR_5g014040 29.508 122 81 3 10 129 14 132 9.14e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene066711.t1 AT2G01760 38.889 252 113 6 7 221 4 251 3.15e-55 181
MS.gene066711.t1 AT1G67710 40.506 237 114 5 11 220 8 244 5.49e-50 171
MS.gene066711.t1 AT2G01760 35.000 280 113 7 7 221 4 279 1.81e-49 167
MS.gene066711.t1 AT3G16857 36.863 255 117 4 10 220 33 287 2.12e-48 169
MS.gene066711.t1 AT3G16857 36.863 255 117 4 10 220 33 287 3.06e-48 169
MS.gene066711.t1 AT4G31920 38.288 222 127 2 10 221 13 234 4.30e-46 161
MS.gene066711.t1 AT2G25180 37.815 238 118 4 10 221 13 246 2.58e-44 157
MS.gene066711.t1 AT5G58080 37.500 248 126 7 10 231 14 258 7.27e-38 139
MS.gene066711.t1 AT3G16857 35.185 216 96 4 49 220 2 217 2.56e-36 135
MS.gene066711.t1 AT5G49240 32.231 242 137 6 3 219 33 272 1.52e-35 128
MS.gene066711.t1 AT2G01760 36.316 190 81 5 68 221 1 186 1.34e-34 126
MS.gene066711.t1 AT1G67710 39.665 179 82 4 68 220 1 179 2.38e-32 122
MS.gene066711.t1 AT1G49190 29.167 240 141 5 10 220 30 269 5.67e-30 115
MS.gene066711.t1 AT3G62670 29.412 221 135 5 28 227 53 273 3.84e-29 113
MS.gene066711.t1 AT1G67710 38.365 159 72 4 88 220 12 170 7.43e-24 99.4
MS.gene066711.t1 AT5G07210 26.255 259 137 6 14 220 16 272 1.36e-23 99.4
MS.gene066711.t1 AT5G07210 25.468 267 137 7 14 220 16 280 4.07e-21 92.0
MS.gene066711.t1 AT1G49190 33.871 124 81 1 10 132 30 153 1.43e-19 87.4
MS.gene066711.t1 AT2G27070 24.046 262 142 7 14 220 16 275 1.57e-17 81.6
MS.gene066711.t1 AT1G68210 24.444 270 143 8 8 220 7 272 2.10e-16 78.6
MS.gene066711.t1 AT5G29000 34.615 130 68 5 103 224 166 286 5.53e-14 70.5
MS.gene066711.t1 AT5G29000 30.682 176 93 7 69 224 77 243 1.14e-13 69.7
MS.gene066711.t1 AT5G29000 30.682 176 93 7 69 224 77 243 1.14e-13 69.7
MS.gene066711.t1 AT5G29000 30.682 176 93 7 69 224 120 286 1.15e-13 70.1
MS.gene066711.t1 AT3G04030 55.769 52 22 1 170 220 45 96 4.46e-13 68.2
MS.gene066711.t1 AT3G04030 55.769 52 22 1 170 220 45 96 4.71e-13 68.2
MS.gene066711.t1 AT5G18240 49.275 69 33 2 153 220 29 96 8.05e-13 67.4
MS.gene066711.t1 AT5G18240 49.275 69 33 2 153 220 29 96 8.05e-13 67.4
MS.gene066711.t1 AT5G18240 49.275 69 33 2 153 220 29 96 9.40e-13 67.4
MS.gene066711.t1 AT5G18240 49.275 69 33 2 153 220 29 96 9.40e-13 67.4
MS.gene066711.t1 AT5G18240 49.275 69 33 2 153 220 29 96 9.63e-13 67.4
MS.gene066711.t1 AT5G44190 51.923 52 25 0 169 220 146 197 2.61e-12 65.9
MS.gene066711.t1 AT3G04030 52.941 51 24 0 170 220 45 95 2.86e-12 65.9
MS.gene066711.t1 AT5G44190 51.923 52 25 0 169 220 146 197 2.90e-12 65.9
MS.gene066711.t1 AT2G01060 50.794 63 30 1 159 220 4 66 3.13e-12 65.1
MS.gene066711.t1 AT5G59570 44.615 65 33 1 156 220 130 191 6.65e-12 64.3
MS.gene066711.t1 AT5G59570 44.615 65 33 1 156 220 130 191 6.65e-12 64.3
MS.gene066711.t1 AT2G40970 50.000 52 26 0 169 220 104 155 2.09e-11 62.4
MS.gene066711.t1 AT5G05090 40.964 83 37 2 138 220 61 131 2.54e-11 62.4
MS.gene066711.t1 AT2G20570 50.000 52 26 0 169 220 152 203 3.28e-11 62.8
MS.gene066711.t1 AT4G18020 38.571 70 40 1 152 221 281 347 3.45e-11 62.8
MS.gene066711.t1 AT4G18020 38.571 70 40 1 152 221 281 347 3.45e-11 62.8
MS.gene066711.t1 AT4G18020 38.571 70 40 1 152 221 281 347 3.45e-11 62.8
MS.gene066711.t1 AT4G18020 38.571 70 40 1 152 221 281 347 3.45e-11 62.8
MS.gene066711.t1 AT4G18020 38.571 70 40 1 152 221 281 347 3.45e-11 62.8
MS.gene066711.t1 AT4G18020 38.571 70 40 1 152 221 281 347 3.45e-11 62.8
MS.gene066711.t1 AT4G18020 38.571 70 40 1 152 221 281 347 3.66e-11 62.8
MS.gene066711.t1 AT4G18020 38.571 70 40 1 152 221 281 347 3.66e-11 62.8
MS.gene066711.t1 AT4G18020 38.571 70 40 1 152 221 281 347 3.66e-11 62.8
MS.gene066711.t1 AT4G18020 38.571 70 40 1 152 221 281 347 3.66e-11 62.8
MS.gene066711.t1 AT4G18020 38.571 70 40 1 152 221 281 347 3.66e-11 62.8
MS.gene066711.t1 AT1G79430 47.692 65 32 2 170 233 34 97 3.78e-11 62.4
MS.gene066711.t1 AT3G10760 50.000 52 26 0 169 220 104 155 6.01e-11 61.6
MS.gene066711.t1 AT3G46640 48.077 52 27 0 169 220 143 194 9.16e-11 61.2
MS.gene066711.t1 AT3G46640 48.077 52 27 0 169 220 143 194 9.65e-11 61.2
MS.gene066711.t1 AT3G46640 48.077 52 27 0 169 220 143 194 9.65e-11 61.2

Find 48 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATGTTGCCAGCCATTTAC+AGG 0.283862 4.3:+76380765 MS.gene066711:CDS
TGCTAAAACGAACCTGTAAA+TGG 0.306750 4.3:-76380777 None:intergenic
CTTGAATTTGTTGGAAAGAA+AGG 0.326280 4.3:+76380067 MS.gene066711:CDS
AGAAACCGCTGATGCAGTTC+TGG 0.337779 4.3:-76380566 None:intergenic
TTCTGATGCCTTGAATTTGT+TGG 0.373586 4.3:+76380058 MS.gene066711:CDS
TGAGTTGTAGGGTAACATTT+TGG 0.376494 4.3:-76380151 None:intergenic
CACATATTGGACTAAGCCTT+TGG 0.377509 4.3:+76380364 MS.gene066711:CDS
TTTAATGTAAAGAATCATCT+TGG 0.381877 4.3:-76381516 None:intergenic
CTTTCTTTCCAACAAATTCA+AGG 0.396613 4.3:-76380066 None:intergenic
ATCAGAAGCTGTATTGCATT+TGG 0.403201 4.3:-76380042 None:intergenic
TGACAGGAATGTTGAGTTGT+AGG 0.408636 4.3:-76380163 None:intergenic
AATAAAGAATATGAAATTGT+TGG 0.416766 4.3:+76380449 MS.gene066711:CDS
AAAGAATCATCTTGGGAGTT+GGG 0.445795 4.3:-76381508 None:intergenic
TTGAGACCGGCTGGGAATGA+TGG 0.453544 4.3:-76379802 None:intergenic
TAAAGAATCATCTTGGGAGT+TGG 0.460215 4.3:-76381509 None:intergenic
TTCTGGCGACCAAGACAAAC+GGG 0.460294 4.3:-76380549 None:intergenic
AATAAATTCTTACTAATGAC+AGG 0.461511 4.3:-76380179 None:intergenic
TGTAATCGATATCATTATCA+AGG 0.463829 4.3:+76379877 MS.gene066711:CDS
AAGTCATAAACATCCATGTT+TGG 0.465091 4.3:-76380125 None:intergenic
AATGTGGGGCTTGCACATAT+TGG 0.467947 4.3:+76380351 MS.gene066711:CDS
CAAAGAAGGCCCGTTTGTCT+TGG 0.473177 4.3:+76380540 MS.gene066711:CDS
GCAATAACCTTGAGACCGGC+TGG 0.475576 4.3:-76379811 None:intergenic
AAAAGAAACACATGCAAAGA+AGG 0.478150 4.3:+76380526 MS.gene066711:CDS
GTTCTGGCGACCAAGACAAA+CGG 0.493157 4.3:-76380550 None:intergenic
CTATATGCTGTCAATCAACT+AGG 0.499504 4.3:+76380587 MS.gene066711:CDS
ATGATGAAGGCAGGCAGAGA+AGG 0.502025 4.3:+76381471 MS.gene066711:CDS
TTAATGTAAAGAATCATCTT+GGG 0.504417 4.3:-76381515 None:intergenic
AGGAAAGAATCATACTATCA+AGG 0.510494 4.3:-76380610 None:intergenic
ATTATGAAGTCTATTGAATG+TGG 0.513075 4.3:+76380335 MS.gene066711:CDS
ATATGAAATTGTTGGAAGCT+CGG 0.515274 4.3:+76380457 MS.gene066711:CDS
GACAGGAATGTTGAGTTGTA+GGG 0.519779 4.3:-76380162 None:intergenic
TTATGAAGTCTATTGAATGT+GGG 0.532174 4.3:+76380336 MS.gene066711:CDS
AAAACGAACCTGTAAATGGC+TGG 0.535893 4.3:-76380773 None:intergenic
CACTGTCCTCAACTCTATTG+AGG 0.546156 4.3:+76379849 MS.gene066711:CDS
ATCATTCCCAGCCGGTCTCA+AGG 0.552068 4.3:+76379804 MS.gene066711:CDS
TGAGACCGGCTGGGAATGAT+GGG 0.577892 4.3:-76379801 None:intergenic
CTTCATAATAGAACTTGCTG+TGG 0.579779 4.3:-76380321 None:intergenic
AATTGCAATAACCTTGAGAC+CGG 0.581075 4.3:-76379815 None:intergenic
TGGAAGAGGATGATGAAGGC+AGG 0.590224 4.3:+76381462 MS.gene066711:intron
TATGAAGTCTATTGAATGTG+GGG 0.598969 4.3:+76380337 MS.gene066711:CDS
TGATGCTCATATGCCAAACA+TGG 0.604750 4.3:+76380112 MS.gene066711:CDS
GGTCGCCAGAACTGCATCAG+CGG 0.609761 4.3:+76380561 MS.gene066711:CDS
CAATAACCTTGAGACCGGCT+GGG 0.613963 4.3:-76379810 None:intergenic
GACAACCCATCATTCCCAGC+CGG 0.620153 4.3:+76379796 MS.gene066711:CDS
TCTTACTACATGTTGCCACA+TGG 0.630006 4.3:-76380405 None:intergenic
CTGCTGGAAGAGGATGATGA+AGG 0.632380 4.3:+76381458 MS.gene066711:intron
ACATCTCCTCAATAGAGTTG+AGG 0.637933 4.3:-76379855 None:intergenic
TGAAATTGTTGGAAGCTCGG+TGG 0.670504 4.3:+76380460 MS.gene066711:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAGAATATGAAATTGT+TGG + chr4.3:76380449-76380468 MS.gene066711:CDS 15.0%
!! CATATAGTAAAAAAGTAATT+AGG - chr4.3:76380633-76380652 None:intergenic 15.0%
!!! TGATTTTAAACTGAAATTTA+TGG + chr4.3:76381083-76381102 MS.gene066711:intron 15.0%
!! AAAAATGTTGTTAGTAATGT+CGG - chr4.3:76381356-76381375 None:intergenic 20.0%
!! AATAAATTCTTACTAATGAC+AGG - chr4.3:76380182-76380201 None:intergenic 20.0%
!! ATAAATCATCATCAACATAT+GGG - chr4.3:76381399-76381418 None:intergenic 20.0%
!! TGGTTCAAAAAAATAGAAAA+CGG + chr4.3:76380480-76380499 MS.gene066711:CDS 20.0%
!!! AAAAAAGATTCTGAAAATCA+TGG + chr4.3:76380720-76380739 MS.gene066711:CDS 20.0%
!!! AACATGTTCTTTTTTCATAT+CGG - chr4.3:76380752-76380771 None:intergenic 20.0%
!!! AGAAACTTTAGAATTGAATA+AGG - chr4.3:76379924-76379943 None:intergenic 20.0%
!!! ATGATTTTCAGAATCTTTTT+TGG - chr4.3:76380721-76380740 None:intergenic 20.0%
!!! ATGTTTTTCTCTTAATTTTC+AGG + chr4.3:76380688-76380707 MS.gene066711:intron 20.0%
!!! TGTTTTTCTCTTAATTTTCA+GGG + chr4.3:76380689-76380708 MS.gene066711:intron 20.0%
! AAAATTACAACAACAGAGTT+AGG - chr4.3:76380877-76380896 None:intergenic 25.0%
! AGTAGTATATTATCAACAAG+AGG - chr4.3:76381047-76381066 None:intergenic 25.0%
! ATTATGAAGTCTATTGAATG+TGG + chr4.3:76380335-76380354 MS.gene066711:CDS 25.0%
! GATAAATCATCATCAACATA+TGG - chr4.3:76381400-76381419 None:intergenic 25.0%
! GGTTCAAAAAAATAGAAAAC+GGG + chr4.3:76380481-76380500 MS.gene066711:CDS 25.0%
! GTAGAATGAAAAAATCAAAG+AGG + chr4.3:76381194-76381213 MS.gene066711:intron 25.0%
! GTTCAAAAAAATAGAAAACG+GGG + chr4.3:76380482-76380501 MS.gene066711:CDS 25.0%
! TGTAATCGATATCATTATCA+AGG + chr4.3:76379877-76379896 MS.gene066711:CDS 25.0%
! TTATGAAGTCTATTGAATGT+GGG + chr4.3:76380336-76380355 MS.gene066711:CDS 25.0%
! TTTAATAACATGCAAGACTA+AGG - chr4.3:76380923-76380942 None:intergenic 25.0%
!! GTTTTTCTCTTAATTTTCAG+GGG + chr4.3:76380690-76380709 MS.gene066711:intron 25.0%
!!! ACATGTTCTTTTTTCATATC+GGG - chr4.3:76380751-76380770 None:intergenic 25.0%
!!! TGTTAATTGATTATTTCTGC+TGG + chr4.3:76381442-76381461 MS.gene066711:intron 25.0%
!!! TTATTTCTCTTTTGTAGTGA+TGG + chr4.3:76380289-76380308 MS.gene066711:intron 25.0%
!!! TTTCTACGTTCTTACTTTTA+TGG + chr4.3:76379939-76379958 MS.gene066711:intron 25.0%
AAAAGAAACACATGCAAAGA+AGG + chr4.3:76380526-76380545 MS.gene066711:CDS 30.0%
AAGTCATAAACATCCATGTT+TGG - chr4.3:76380128-76380147 None:intergenic 30.0%
ACGCTAAATTGTGTTTCAAA+AGG - chr4.3:76381223-76381242 None:intergenic 30.0%
AGAGGATATATAGAAGCTAA+TGG - chr4.3:76381029-76381048 None:intergenic 30.0%
AGGAAAGAATCATACTATCA+AGG - chr4.3:76380613-76380632 None:intergenic 30.0%
ATATGAAATTGTTGGAAGCT+CGG + chr4.3:76380457-76380476 MS.gene066711:CDS 30.0%
ATGATTTATCATCACTTGTG+TGG + chr4.3:76381410-76381429 MS.gene066711:intron 30.0%
CTTTCTTTCCAACAAATTCA+AGG - chr4.3:76380069-76380088 None:intergenic 30.0%
TATGAAGTCTATTGAATGTG+GGG + chr4.3:76380337-76380356 MS.gene066711:CDS 30.0%
!! CTTGAATTTGTTGGAAAGAA+AGG + chr4.3:76380067-76380086 MS.gene066711:CDS 30.0%
AAAAGATCACTGACAATCCT+AGG - chr4.3:76380853-76380872 None:intergenic 35.0%
AATTGCAATAACCTTGAGAC+CGG - chr4.3:76379818-76379837 None:intergenic 35.0%
AGTAGTGAATTATGCAGTCA+TGG + chr4.3:76380959-76380978 MS.gene066711:intron 35.0%
ATCAACATATGGGAACAAGT+TGG - chr4.3:76381389-76381408 None:intergenic 35.0%
ATCAGAAGCTGTATTGCATT+TGG - chr4.3:76380045-76380064 None:intergenic 35.0%
CTATATGCTGTCAATCAACT+AGG + chr4.3:76380587-76380606 MS.gene066711:CDS 35.0%
TAAGCCTTTGGTTGAAAAAG+AGG + chr4.3:76380376-76380395 MS.gene066711:CDS 35.0%
TCAACATATGGGAACAAGTT+GGG - chr4.3:76381388-76381407 None:intergenic 35.0%
TGCTAAAACGAACCTGTAAA+TGG - chr4.3:76380780-76380799 None:intergenic 35.0%
TTCTGATGCCTTGAATTTGT+TGG + chr4.3:76380058-76380077 MS.gene066711:CDS 35.0%
TTTAAAGAGCTCAACCAAAG+AGG + chr4.3:76381165-76381184 MS.gene066711:intron 35.0%
! CATTCTACCTTTTTCCTCTT+TGG - chr4.3:76381182-76381201 None:intergenic 35.0%
! CTTTGCATGTGTTTCTTTTG+AGG - chr4.3:76380525-76380544 None:intergenic 35.0%
! TGAGTTGTAGGGTAACATTT+TGG - chr4.3:76380154-76380173 None:intergenic 35.0%
!! CTTCATAATAGAACTTGCTG+TGG - chr4.3:76380324-76380343 None:intergenic 35.0%
!! TTGATTATTTCTGCTGGAAG+AGG + chr4.3:76381448-76381467 MS.gene066711:intron 35.0%
!!! TTGACCTCTTTTTCAACCAA+AGG - chr4.3:76380383-76380402 None:intergenic 35.0%
AAAAAGAGGTCAAGACCATG+TGG + chr4.3:76380390-76380409 MS.gene066711:CDS 40.0%
AAAACGAACCTGTAAATGGC+TGG - chr4.3:76380776-76380795 None:intergenic 40.0%
AATCCTAGGCAACTAGACTT+AGG - chr4.3:76380839-76380858 None:intergenic 40.0%
ACATCTCCTCAATAGAGTTG+AGG - chr4.3:76379858-76379877 None:intergenic 40.0%
AGCTCAACCAAAGAGGAAAA+AGG + chr4.3:76381172-76381191 MS.gene066711:intron 40.0%
CACATATTGGACTAAGCCTT+TGG + chr4.3:76380364-76380383 MS.gene066711:CDS 40.0%
GCAATTGTCATGACATTGTG+TGG - chr4.3:76381299-76381318 None:intergenic 40.0%
TCGAATTCAGGAGAAAACTC+TGG - chr4.3:76381276-76381295 None:intergenic 40.0%
TCTTACTACATGTTGCCACA+TGG - chr4.3:76380408-76380427 None:intergenic 40.0%
TGATGCTCATATGCCAAACA+TGG + chr4.3:76380112-76380131 MS.gene066711:CDS 40.0%
! GACAGGAATGTTGAGTTGTA+GGG - chr4.3:76380165-76380184 None:intergenic 40.0%
! TGACAGGAATGTTGAGTTGT+AGG - chr4.3:76380166-76380185 None:intergenic 40.0%
AATGTGGGGCTTGCACATAT+TGG + chr4.3:76380351-76380370 MS.gene066711:CDS 45.0%
ACATGTTGCCAGCCATTTAC+AGG + chr4.3:76380765-76380784 MS.gene066711:CDS 45.0%
AGAAGCTACTCACTCAATGC+CGG + chr4.3:76381243-76381262 MS.gene066711:intron 45.0%
ATTGCGACACACGACAACAA+TGG + chr4.3:76381314-76381333 MS.gene066711:intron 45.0%
CACTGTCCTCAACTCTATTG+AGG + chr4.3:76379849-76379868 MS.gene066711:CDS 45.0%
GACATTGTGTGGTCGAATTC+AGG - chr4.3:76381288-76381307 None:intergenic 45.0%
GTACCTAAGTCTAGTTGCCT+AGG + chr4.3:76380833-76380852 MS.gene066711:intron 45.0%
TGAAATTGTTGGAAGCTCGG+TGG + chr4.3:76380460-76380479 MS.gene066711:CDS 45.0%
AGAAAACTCTGGTCCTGCTC+CGG - chr4.3:76381265-76381284 None:intergenic 50.0%
AGAAACCGCTGATGCAGTTC+TGG - chr4.3:76380569-76380588 None:intergenic 50.0%
ATGATGAAGGCAGGCAGAGA+AGG + chr4.3:76381471-76381490 MS.gene066711:CDS 50.0%
CAAAGAAGGCCCGTTTGTCT+TGG + chr4.3:76380540-76380559 MS.gene066711:CDS 50.0%
CAATAACCTTGAGACCGGCT+GGG - chr4.3:76379813-76379832 None:intergenic 50.0%
CGACACACGACAACAATGGA+TGG + chr4.3:76381318-76381337 MS.gene066711:intron 50.0%
CTGCTGGAAGAGGATGATGA+AGG + chr4.3:76381458-76381477 MS.gene066711:intron 50.0%
GTTCTGGCGACCAAGACAAA+CGG - chr4.3:76380553-76380572 None:intergenic 50.0%
TGGAAGAGGATGATGAAGGC+AGG + chr4.3:76381462-76381481 MS.gene066711:intron 50.0%
TTCTGGCGACCAAGACAAAC+GGG - chr4.3:76380552-76380571 None:intergenic 50.0%
ATCATTCCCAGCCGGTCTCA+AGG + chr4.3:76379804-76379823 MS.gene066711:CDS 55.0%
GACAACCCATCATTCCCAGC+CGG + chr4.3:76379796-76379815 MS.gene066711:CDS 55.0%
GCAATAACCTTGAGACCGGC+TGG - chr4.3:76379814-76379833 None:intergenic 55.0%
TACTCACTCAATGCCGGAGC+AGG + chr4.3:76381249-76381268 MS.gene066711:intron 55.0%
TGAGACCGGCTGGGAATGAT+GGG - chr4.3:76379804-76379823 None:intergenic 55.0%
TTGAGACCGGCTGGGAATGA+TGG - chr4.3:76379805-76379824 None:intergenic 55.0%
GGTCGCCAGAACTGCATCAG+CGG + chr4.3:76380561-76380580 MS.gene066711:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 76379781 76381524 76379781 ID=MS.gene066711
chr4.3 mRNA 76379781 76381524 76379781 ID=MS.gene066711.t1;Parent=MS.gene066711
chr4.3 exon 76379781 76379898 76379781 ID=MS.gene066711.t1.exon1;Parent=MS.gene066711.t1
chr4.3 CDS 76379781 76379898 76379781 ID=cds.MS.gene066711.t1;Parent=MS.gene066711.t1
chr4.3 exon 76380039 76380188 76380039 ID=MS.gene066711.t1.exon2;Parent=MS.gene066711.t1
chr4.3 CDS 76380039 76380188 76380039 ID=cds.MS.gene066711.t1;Parent=MS.gene066711.t1
chr4.3 exon 76380306 76380617 76380306 ID=MS.gene066711.t1.exon3;Parent=MS.gene066711.t1
chr4.3 CDS 76380306 76380617 76380306 ID=cds.MS.gene066711.t1;Parent=MS.gene066711.t1
chr4.3 exon 76380710 76380786 76380710 ID=MS.gene066711.t1.exon4;Parent=MS.gene066711.t1
chr4.3 CDS 76380710 76380786 76380710 ID=cds.MS.gene066711.t1;Parent=MS.gene066711.t1
chr4.3 exon 76381468 76381524 76381468 ID=MS.gene066711.t1.exon5;Parent=MS.gene066711.t1
chr4.3 CDS 76381468 76381524 76381468 ID=cds.MS.gene066711.t1;Parent=MS.gene066711.t1
Gene Sequence

>MS.gene066711

ATGGCAGTTTTCACTGACAACCCATCATTCCCAGCCGGTCTCAAGGTTATTGCAATTGATCATGACATCACTGTCCTCAACTCTATTGAGGAGATGTGTAATCGATATCATTATCAAGGTTTGTTACTTAGTTAATTGCACCTTATTCAATTCTAAAGTTTCTACGTTCTTACTTTTATGGTTTTTCATGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTCTATTCTTATGTATATTTTTATATGTTTGTTTATTTCAGTTACCAAATGCAATACAGCTTCTGATGCCTTGAATTTGTTGGAAAGAAAGGACTGTTTTGATGTAATGTTGATTGATGCTCATATGCCAAACATGGATGTTTATGACTTTGTCCAAAATGTTACCCTACAACTCAACATTCCTGTCATTAGTAAGAATTTATTCAACTTTTTCATTAAAAGTCTTTAGTTACACATTTCACATGATTTATTCATACATATGTACTTAAGAAGTGTGAACTGACATTATTATTATTTCTCTTTTGTAGTGATGGCTGTTGATTCCACAGCAAGTTCTATTATGAAGTCTATTGAATGTGGGGCTTGCACATATTGGACTAAGCCTTTGGTTGAAAAAGAGGTCAAGACCATGTGGCAACATGTAGTAAGAATTAGAAACTGTTTGACTGAAAATAAAGAATATGAAATTGTTGGAAGCTCGGTGGTTCAAAAAAATAGAAAACGGGGTAGAGAAGATGCTAATGCCTCAAAAGAAACACATGCAAAGAAGGCCCGTTTGTCTTGGTCGCCAGAACTGCATCAGCGGTTTCTATATGCTGTCAATCAACTAGGCCTTGATAGTATGATTCTTTCCTAATTACTTTTTTACTATATGCTTTGTTGCATTCTTCAACAGTTGAACTTATGTGCATGTTTTTCTCTTAATTTTCAGGGGCAACGCCAAAAAAGATTCTGAAAATCATGGATGTTCCCGATATGAAAAAAGAACATGTTGCCAGCCATTTACAGGTTCGTTTTAGCATAAATTTTGTTGATTCTGTAAATTTGATATATTGTACCTAAGTCTAGTTGCCTAGGATTGTCAGTGATCTTTTACCTAACTCTGTTGTTGTAATTTTGTAAATCATGTATGTTGTTTATACCTTAGTCTTGCATGTTATTAAAACTATTGAAATTGTAAAGTAGTGAATTATGCAGTCATGGCAGATACTGAAATCTGAGTTTTAGAATAGAATATAAGTATTTCTCCATTAGCTTCTATATATCCTCTTGTTGATAATATACTACTTGTGTTCAATTTTGTGTGATTTTAAACTGAAATTTATGGAGTATTATATATTATTAACATTGTAATTGAAATGTTGCTTTGCAGAAGTATAGAAATTATTTAAAGAGCTCAACCAAAGAGGAAAAAGGTAGAATGAAAAAATCAAAGAGGAGTCCTTTTGAAACACAATTTAGCGTAGAAGCTACTCACTCAATGCCGGAGCAGGACCAGAGTTTTCTCCTGAATTCGACCACACAATGTCATGACAATTGCGACACACGACAACAATGGATGGAAATTAGTGAATCCGACATTACTAACAACATTTTTTCAGACTTGCCCAACTTGTTCCCATATGTTGATGATGATTTATCATCACTTGTGTGGTGATTACTTTGTTAATTGATTATTTCTGCTGGAAGAGGATGATGAAGGCAGGCAGAGAAGGTCATCAAGAGTACTCCCAACTCCCAAGATGA
Protein sequence

>MS.gene066711.t1

MAVFTDNPSFPAGLKVIAIDHDITVLNSIEEMCNRYHYQVTKCNTASDALNLLERKDCFDVMLIDAHMPNMDVYDFVQNVTLQLNIPVIMMAVDSTASSIMKSIECGACTYWTKPLVEKEVKTMWQHVVRIRNCLTENKEYEIVGSSVVQKNRKRGREDANASKETHAKKARLSWSPELHQRFLYAVNQLGLDRATPKKILKIMDVPDMKKEHVASHLQRMMKAGREGHQEYSQLPR