Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066909.t1 | XP_013445290.1 | 89.3 | 272 | 28 | 1 | 1 | 272 | 1 | 271 | 1.60E-142 | 515.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066909.t1 | Q94JM3 | 48.7 | 275 | 134 | 3 | 2 | 272 | 102 | 373 | 6.2e-74 | 278.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066909.t1 | A0A072TQ39 | 89.3 | 272 | 28 | 1 | 1 | 272 | 1 | 271 | 1.2e-142 | 515.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene066909.t1 | TF | B3-ARF |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066909.t1 | MTR_8g446900 | 89.338 | 272 | 28 | 1 | 1 | 272 | 1 | 271 | 0.0 | 508 |
MS.gene066909.t1 | MTR_8g100050 | 49.270 | 274 | 132 | 3 | 3 | 272 | 101 | 371 | 3.61e-85 | 269 |
MS.gene066909.t1 | MTR_8g100050 | 49.270 | 274 | 132 | 3 | 3 | 272 | 101 | 371 | 2.45e-84 | 269 |
MS.gene066909.t1 | MTR_2g005240 | 46.350 | 274 | 141 | 3 | 2 | 272 | 64 | 334 | 1.01e-78 | 251 |
MS.gene066909.t1 | MTR_4g060460 | 42.708 | 288 | 145 | 5 | 1 | 272 | 93 | 376 | 4.70e-73 | 238 |
MS.gene066909.t1 | MTR_4g060460 | 42.708 | 288 | 145 | 5 | 1 | 272 | 93 | 376 | 6.63e-73 | 238 |
MS.gene066909.t1 | MTR_2g093740 | 41.667 | 288 | 148 | 5 | 1 | 272 | 95 | 378 | 1.54e-72 | 235 |
MS.gene066909.t1 | MTR_2g093740 | 41.667 | 288 | 148 | 5 | 1 | 272 | 95 | 378 | 6.03e-72 | 234 |
MS.gene066909.t1 | MTR_2g093740 | 41.667 | 288 | 148 | 5 | 1 | 272 | 95 | 378 | 1.28e-71 | 235 |
MS.gene066909.t1 | MTR_8g027440 | 44.727 | 275 | 142 | 6 | 2 | 272 | 70 | 338 | 6.34e-71 | 231 |
MS.gene066909.t1 | MTR_4g088210 | 41.343 | 283 | 146 | 5 | 7 | 272 | 78 | 357 | 8.70e-69 | 225 |
MS.gene066909.t1 | MTR_4g088210 | 41.343 | 283 | 146 | 5 | 7 | 272 | 78 | 357 | 1.04e-68 | 225 |
MS.gene066909.t1 | MTR_2g093740 | 39.867 | 301 | 148 | 6 | 1 | 272 | 95 | 391 | 1.09e-68 | 225 |
MS.gene066909.t1 | MTR_4g021580 | 43.636 | 275 | 144 | 5 | 3 | 272 | 61 | 329 | 1.83e-68 | 223 |
MS.gene066909.t1 | MTR_4g021580 | 43.636 | 275 | 144 | 5 | 3 | 272 | 61 | 329 | 3.67e-68 | 223 |
MS.gene066909.t1 | MTR_2g093740 | 39.867 | 301 | 148 | 6 | 1 | 272 | 95 | 391 | 3.86e-68 | 224 |
MS.gene066909.t1 | MTR_2g093740 | 39.867 | 301 | 148 | 6 | 1 | 272 | 95 | 391 | 5.91e-68 | 225 |
MS.gene066909.t1 | MTR_7g062540 | 42.909 | 275 | 146 | 5 | 3 | 272 | 56 | 324 | 1.93e-66 | 219 |
MS.gene066909.t1 | MTR_2g014770 | 41.935 | 279 | 146 | 4 | 7 | 272 | 92 | 367 | 3.02e-66 | 217 |
MS.gene066909.t1 | MTR_2g014770 | 41.935 | 279 | 146 | 4 | 7 | 272 | 92 | 367 | 1.23e-65 | 217 |
MS.gene066909.t1 | MTR_1g024025 | 44.964 | 278 | 139 | 8 | 2 | 271 | 84 | 355 | 9.35e-64 | 216 |
MS.gene066909.t1 | MTR_5g076270 | 42.086 | 278 | 150 | 7 | 2 | 272 | 65 | 338 | 1.71e-62 | 211 |
MS.gene066909.t1 | MTR_8g079492 | 42.029 | 276 | 150 | 6 | 3 | 272 | 65 | 336 | 2.68e-62 | 211 |
MS.gene066909.t1 | MTR_8g079492 | 42.029 | 276 | 150 | 6 | 3 | 272 | 65 | 336 | 3.09e-62 | 211 |
MS.gene066909.t1 | MTR_2g093740 | 42.562 | 242 | 127 | 5 | 39 | 272 | 11 | 248 | 7.18e-62 | 206 |
MS.gene066909.t1 | MTR_2g018690 | 42.960 | 277 | 147 | 7 | 3 | 272 | 65 | 337 | 1.29e-61 | 209 |
MS.gene066909.t1 | MTR_2g093740 | 42.562 | 242 | 127 | 5 | 39 | 272 | 11 | 248 | 1.42e-61 | 206 |
MS.gene066909.t1 | MTR_2g043250 | 41.155 | 277 | 151 | 6 | 3 | 272 | 64 | 335 | 8.30e-61 | 207 |
MS.gene066909.t1 | MTR_3g064050 | 41.155 | 277 | 154 | 6 | 2 | 272 | 67 | 340 | 1.23e-60 | 206 |
MS.gene066909.t1 | MTR_4g124900 | 39.643 | 280 | 151 | 6 | 3 | 272 | 64 | 335 | 2.31e-60 | 206 |
MS.gene066909.t1 | MTR_4g124900 | 39.643 | 280 | 151 | 6 | 3 | 272 | 64 | 335 | 2.35e-60 | 206 |
MS.gene066909.t1 | MTR_2g093740 | 40.392 | 255 | 127 | 6 | 39 | 272 | 11 | 261 | 3.00e-58 | 196 |
MS.gene066909.t1 | MTR_8g079492 | 42.636 | 258 | 138 | 6 | 21 | 272 | 1 | 254 | 5.85e-58 | 198 |
MS.gene066909.t1 | MTR_2g093740 | 40.392 | 255 | 127 | 6 | 39 | 272 | 11 | 261 | 5.92e-58 | 196 |
MS.gene066909.t1 | MTR_8g101360 | 40.283 | 283 | 150 | 7 | 1 | 272 | 71 | 345 | 2.46e-57 | 197 |
MS.gene066909.t1 | MTR_2g094570 | 33.333 | 306 | 166 | 4 | 5 | 272 | 50 | 355 | 4.75e-49 | 172 |
MS.gene066909.t1 | MTR_2g094570 | 33.333 | 306 | 166 | 4 | 5 | 272 | 50 | 355 | 5.97e-49 | 172 |
MS.gene066909.t1 | MTR_2g094570 | 33.333 | 306 | 166 | 4 | 5 | 272 | 106 | 411 | 9.48e-49 | 172 |
MS.gene066909.t1 | MTR_1g094960 | 33.226 | 310 | 169 | 6 | 1 | 272 | 53 | 362 | 9.94e-48 | 167 |
MS.gene066909.t1 | MTR_4g058930 | 33.550 | 307 | 158 | 5 | 12 | 272 | 56 | 362 | 9.21e-47 | 166 |
MS.gene066909.t1 | MTR_4g058930 | 33.550 | 307 | 158 | 5 | 12 | 272 | 56 | 362 | 1.63e-46 | 165 |
MS.gene066909.t1 | MTR_1g064430 | 31.833 | 311 | 166 | 7 | 8 | 272 | 82 | 392 | 3.60e-43 | 156 |
MS.gene066909.t1 | MTR_1g064430 | 31.833 | 311 | 166 | 7 | 8 | 272 | 69 | 379 | 3.84e-43 | 156 |
MS.gene066909.t1 | MTR_7g101275 | 31.769 | 277 | 166 | 7 | 8 | 271 | 34 | 300 | 1.93e-38 | 139 |
MS.gene066909.t1 | MTR_7g101280 | 30.503 | 318 | 164 | 10 | 8 | 272 | 73 | 386 | 2.48e-38 | 142 |
MS.gene066909.t1 | MTR_0041s0110 | 30.503 | 318 | 164 | 10 | 8 | 272 | 73 | 386 | 2.48e-38 | 142 |
MS.gene066909.t1 | MTR_3g073420 | 30.100 | 299 | 167 | 6 | 12 | 272 | 66 | 360 | 2.24e-35 | 133 |
MS.gene066909.t1 | MTR_5g040880 | 28.679 | 265 | 172 | 4 | 12 | 272 | 60 | 311 | 2.77e-34 | 130 |
MS.gene066909.t1 | MTR_5g061220 | 30.041 | 243 | 151 | 3 | 14 | 237 | 70 | 312 | 2.93e-32 | 124 |
MS.gene066909.t1 | MTR_2g024430 | 29.213 | 267 | 164 | 6 | 14 | 272 | 72 | 321 | 3.01e-31 | 121 |
MS.gene066909.t1 | MTR_1g058210 | 29.537 | 281 | 176 | 7 | 1 | 266 | 51 | 324 | 1.55e-29 | 116 |
MS.gene066909.t1 | MTR_0041s0120 | 29.452 | 292 | 165 | 9 | 8 | 271 | 34 | 312 | 7.55e-29 | 114 |
MS.gene066909.t1 | MTR_5g082140 | 27.138 | 269 | 175 | 6 | 12 | 272 | 61 | 316 | 3.17e-26 | 107 |
MS.gene066909.t1 | MTR_5g040740 | 27.612 | 268 | 173 | 6 | 12 | 272 | 61 | 314 | 6.67e-26 | 105 |
MS.gene066909.t1 | MTR_2g006270 | 29.268 | 246 | 158 | 6 | 13 | 251 | 65 | 301 | 6.70e-22 | 94.7 |
MS.gene066909.t1 | MTR_5g062970 | 32.432 | 148 | 96 | 1 | 9 | 152 | 81 | 228 | 2.62e-21 | 90.1 |
MS.gene066909.t1 | MTR_5g060630 | 24.715 | 263 | 155 | 8 | 9 | 237 | 58 | 311 | 9.12e-20 | 89.0 |
MS.gene066909.t1 | MTR_5g460740 | 24.715 | 263 | 155 | 8 | 9 | 237 | 58 | 311 | 9.12e-20 | 89.0 |
MS.gene066909.t1 | MTR_5g060780 | 26.496 | 234 | 150 | 8 | 10 | 237 | 59 | 276 | 3.41e-18 | 84.0 |
MS.gene066909.t1 | MTR_5g460920 | 27.119 | 236 | 146 | 9 | 10 | 237 | 59 | 276 | 7.04e-18 | 82.8 |
MS.gene066909.t1 | MTR_5g061890 | 26.068 | 234 | 151 | 8 | 10 | 237 | 59 | 276 | 1.66e-16 | 79.0 |
MS.gene066909.t1 | MTR_2g006380 | 25.000 | 256 | 153 | 10 | 13 | 252 | 72 | 304 | 1.91e-16 | 79.0 |
MS.gene066909.t1 | MTR_3g064050 | 44.330 | 97 | 51 | 3 | 179 | 272 | 7 | 103 | 6.17e-13 | 68.9 |
MS.gene066909.t1 | MTR_5g074840 | 42.553 | 94 | 49 | 2 | 125 | 217 | 59 | 148 | 9.89e-11 | 59.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066909.t1 | AT5G62000 | 48.727 | 275 | 134 | 3 | 2 | 272 | 102 | 373 | 1.84e-88 | 280 |
MS.gene066909.t1 | AT5G62000 | 48.727 | 275 | 134 | 3 | 2 | 272 | 102 | 373 | 1.85e-88 | 280 |
MS.gene066909.t1 | AT5G62000 | 48.727 | 275 | 134 | 3 | 2 | 272 | 102 | 373 | 1.85e-88 | 280 |
MS.gene066909.t1 | AT5G62000 | 48.727 | 275 | 134 | 3 | 2 | 272 | 102 | 373 | 1.85e-88 | 280 |
MS.gene066909.t1 | AT5G62000 | 48.727 | 275 | 134 | 3 | 2 | 272 | 102 | 373 | 1.85e-88 | 280 |
MS.gene066909.t1 | AT1G59750 | 43.636 | 275 | 147 | 4 | 2 | 272 | 63 | 333 | 9.15e-74 | 238 |
MS.gene066909.t1 | AT1G59750 | 43.636 | 275 | 147 | 4 | 2 | 272 | 63 | 333 | 1.02e-73 | 238 |
MS.gene066909.t1 | AT1G59750 | 43.636 | 275 | 147 | 4 | 2 | 272 | 63 | 333 | 1.02e-73 | 238 |
MS.gene066909.t1 | AT1G59750 | 43.636 | 275 | 147 | 4 | 2 | 272 | 63 | 333 | 1.11e-73 | 238 |
MS.gene066909.t1 | AT3G61830 | 44.000 | 275 | 143 | 6 | 2 | 272 | 16 | 283 | 1.93e-72 | 232 |
MS.gene066909.t1 | AT3G61830 | 44.000 | 275 | 143 | 6 | 2 | 272 | 67 | 334 | 7.18e-72 | 231 |
MS.gene066909.t1 | AT2G46530 | 43.066 | 274 | 147 | 5 | 2 | 272 | 63 | 330 | 5.98e-71 | 229 |
MS.gene066909.t1 | AT2G46530 | 43.066 | 274 | 147 | 5 | 2 | 272 | 84 | 351 | 7.67e-71 | 229 |
MS.gene066909.t1 | AT5G60450 | 42.561 | 289 | 142 | 5 | 1 | 272 | 80 | 361 | 4.41e-70 | 230 |
MS.gene066909.t1 | AT5G60450 | 42.561 | 289 | 142 | 5 | 1 | 272 | 104 | 385 | 7.55e-70 | 230 |
MS.gene066909.t1 | AT4G23980 | 43.431 | 274 | 143 | 7 | 4 | 272 | 56 | 322 | 1.47e-68 | 223 |
MS.gene066909.t1 | AT4G23980 | 43.431 | 274 | 143 | 7 | 4 | 272 | 56 | 322 | 1.69e-68 | 223 |
MS.gene066909.t1 | AT2G33860 | 38.214 | 280 | 157 | 3 | 6 | 272 | 92 | 368 | 1.84e-64 | 212 |
MS.gene066909.t1 | AT1G19220 | 42.599 | 277 | 147 | 7 | 3 | 272 | 64 | 335 | 5.87e-64 | 216 |
MS.gene066909.t1 | AT1G19850 | 43.571 | 280 | 143 | 9 | 2 | 272 | 84 | 357 | 3.36e-63 | 213 |
MS.gene066909.t1 | AT1G19850 | 43.571 | 280 | 143 | 9 | 2 | 272 | 95 | 368 | 3.66e-63 | 213 |
MS.gene066909.t1 | AT5G37020 | 42.029 | 276 | 151 | 6 | 3 | 272 | 64 | 336 | 2.17e-62 | 209 |
MS.gene066909.t1 | AT5G37020 | 42.029 | 276 | 151 | 6 | 3 | 272 | 64 | 336 | 5.96e-62 | 209 |
MS.gene066909.t1 | AT5G20730 | 42.446 | 278 | 147 | 8 | 3 | 272 | 65 | 337 | 9.11e-62 | 210 |
MS.gene066909.t1 | AT5G20730 | 42.446 | 278 | 147 | 8 | 3 | 272 | 65 | 337 | 1.07e-61 | 210 |
MS.gene066909.t1 | AT5G20730 | 42.238 | 277 | 148 | 7 | 3 | 272 | 65 | 336 | 1.75e-61 | 209 |
MS.gene066909.t1 | AT2G46530 | 44.444 | 216 | 112 | 4 | 59 | 272 | 34 | 243 | 3.88e-59 | 196 |
MS.gene066909.t1 | AT1G30330 | 40.942 | 276 | 154 | 6 | 3 | 272 | 65 | 337 | 1.65e-57 | 197 |
MS.gene066909.t1 | AT1G30330 | 40.942 | 276 | 154 | 6 | 3 | 272 | 67 | 339 | 1.69e-57 | 197 |
MS.gene066909.t1 | AT1G30330 | 40.942 | 276 | 154 | 6 | 3 | 272 | 67 | 339 | 1.69e-57 | 197 |
MS.gene066909.t1 | AT2G33860 | 41.784 | 213 | 119 | 2 | 62 | 272 | 2 | 211 | 6.53e-57 | 189 |
MS.gene066909.t1 | AT1G34170 | 38.686 | 274 | 154 | 8 | 4 | 272 | 68 | 332 | 1.74e-56 | 189 |
MS.gene066909.t1 | AT1G35540 | 37.269 | 271 | 160 | 5 | 4 | 272 | 70 | 332 | 1.98e-56 | 191 |
MS.gene066909.t1 | AT1G34310 | 36.531 | 271 | 162 | 5 | 4 | 272 | 70 | 332 | 6.33e-56 | 189 |
MS.gene066909.t1 | AT1G35240 | 36.531 | 271 | 162 | 5 | 4 | 272 | 70 | 332 | 3.00e-55 | 187 |
MS.gene066909.t1 | AT5G37020 | 42.623 | 244 | 132 | 5 | 34 | 272 | 1 | 241 | 9.81e-54 | 185 |
MS.gene066909.t1 | AT1G34410 | 35.793 | 271 | 164 | 5 | 4 | 272 | 70 | 332 | 2.65e-53 | 182 |
MS.gene066909.t1 | AT1G34390 | 36.900 | 271 | 159 | 6 | 4 | 272 | 70 | 330 | 4.24e-52 | 179 |
MS.gene066909.t1 | AT1G35520 | 35.055 | 271 | 166 | 5 | 4 | 272 | 70 | 332 | 4.42e-52 | 179 |
MS.gene066909.t1 | AT2G28350 | 32.915 | 319 | 163 | 6 | 4 | 272 | 44 | 361 | 1.02e-49 | 174 |
MS.gene066909.t1 | AT2G28350 | 32.915 | 319 | 163 | 6 | 4 | 272 | 44 | 361 | 1.04e-49 | 174 |
MS.gene066909.t1 | AT1G34170 | 37.729 | 273 | 132 | 9 | 4 | 272 | 68 | 306 | 2.60e-49 | 169 |
MS.gene066909.t1 | AT1G34170 | 37.729 | 273 | 132 | 9 | 4 | 272 | 68 | 306 | 8.66e-49 | 169 |
MS.gene066909.t1 | AT4G30080 | 32.797 | 311 | 170 | 8 | 1 | 272 | 53 | 363 | 1.04e-46 | 166 |
MS.gene066909.t1 | AT1G77850 | 29.703 | 303 | 167 | 4 | 10 | 272 | 61 | 357 | 2.44e-39 | 144 |
MS.gene066909.t1 | AT1G77850 | 29.703 | 303 | 167 | 4 | 10 | 272 | 61 | 357 | 3.00e-39 | 144 |
MS.gene066909.t1 | AT1G43950 | 40.506 | 158 | 89 | 2 | 4 | 161 | 70 | 222 | 1.05e-34 | 125 |
MS.gene066909.t1 | AT2G36080 | 36.190 | 105 | 63 | 2 | 62 | 162 | 38 | 142 | 9.87e-12 | 62.4 |
MS.gene066909.t1 | AT2G36080 | 36.190 | 105 | 63 | 2 | 62 | 162 | 38 | 142 | 9.87e-12 | 62.4 |
MS.gene066909.t1 | AT4G01500 | 37.778 | 90 | 53 | 2 | 62 | 151 | 36 | 122 | 1.18e-11 | 64.3 |
MS.gene066909.t1 | AT1G01030 | 38.889 | 90 | 54 | 1 | 62 | 151 | 56 | 144 | 1.25e-11 | 64.3 |
MS.gene066909.t1 | AT1G01030 | 38.889 | 90 | 54 | 1 | 62 | 151 | 56 | 144 | 1.57e-11 | 64.3 |
MS.gene066909.t1 | AT5G06250 | 31.928 | 166 | 86 | 5 | 53 | 206 | 37 | 187 | 2.48e-11 | 62.8 |
MS.gene066909.t1 | AT5G06250 | 31.928 | 166 | 86 | 5 | 53 | 206 | 37 | 187 | 2.50e-11 | 62.8 |
MS.gene066909.t1 | AT2G46870 | 35.849 | 106 | 62 | 2 | 62 | 162 | 35 | 139 | 2.72e-11 | 63.2 |
MS.gene066909.t1 | AT1G25560 | 35.965 | 114 | 65 | 2 | 44 | 150 | 178 | 290 | 2.74e-11 | 63.5 |
MS.gene066909.t1 | AT2G36080 | 36.190 | 105 | 63 | 2 | 62 | 162 | 38 | 142 | 2.84e-11 | 62.4 |
MS.gene066909.t1 | AT5G06250 | 31.928 | 166 | 86 | 5 | 53 | 206 | 37 | 187 | 2.91e-11 | 62.8 |
MS.gene066909.t1 | AT5G06250 | 31.928 | 166 | 86 | 5 | 53 | 206 | 37 | 187 | 3.49e-11 | 62.8 |
MS.gene066909.t1 | AT2G36080 | 36.190 | 105 | 63 | 2 | 62 | 162 | 38 | 142 | 4.12e-11 | 62.0 |
MS.gene066909.t1 | AT5G06250 | 31.928 | 166 | 86 | 5 | 53 | 206 | 37 | 187 | 4.25e-11 | 62.4 |
MS.gene066909.t1 | AT1G13260 | 35.000 | 100 | 63 | 1 | 62 | 159 | 188 | 287 | 9.37e-11 | 62.0 |
Find 56 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGACATTATGATCACCTTCT+TGG | 0.264286 | 8.4:+54804438 | None:intergenic |
AGTTGTGGGTGTTCAATTAA+AGG | 0.274617 | 8.4:-54807206 | MS.gene066909:intron |
TTAGAAGGCAAATGATAGTT+TGG | 0.288718 | 8.4:+54807241 | None:intergenic |
CTAAAAGAGCAGATTTCATT+AGG | 0.304072 | 8.4:+54806688 | None:intergenic |
AGGGGAGAGAATGGTGAAAT+TGG | 0.305389 | 8.4:-54804858 | MS.gene066909:CDS |
GTTGTCCATGCTGTTTCTAT+TGG | 0.311077 | 8.4:-54804735 | MS.gene066909:CDS |
GAGAATGGTGAAATTGGTAT+TGG | 0.352900 | 8.4:-54804852 | MS.gene066909:CDS |
CATCTATCTGCATGTTGCTT+TGG | 0.355107 | 8.4:+54806616 | None:intergenic |
AGATAGATGCTTTCCCCATC+TGG | 0.359903 | 8.4:-54806602 | MS.gene066909:intron |
TTCTGAACCAGGCCACCTAA+TGG | 0.364231 | 8.4:+54804095 | None:intergenic |
TAGTAAGTTGCTCACTTCAA+TGG | 0.390845 | 8.4:-54806668 | MS.gene066909:CDS |
GCAACAAGAATATGCATTAG+AGG | 0.392171 | 8.4:-54806731 | MS.gene066909:CDS |
AGAATGGTGAAATTGGTATT+GGG | 0.394064 | 8.4:-54804851 | MS.gene066909:CDS |
GAGGACAATCATGCACTTCA+TGG | 0.415546 | 8.4:-54806712 | MS.gene066909:CDS |
GATCTTGCATTGGTGGTTGA+AGG | 0.416950 | 8.4:+54806052 | None:intergenic |
TATCTCACCAAGGGTGGTAT+TGG | 0.417596 | 8.4:+54804697 | None:intergenic |
GCCACTAGATCTTGCATTGG+TGG | 0.421362 | 8.4:+54806045 | None:intergenic |
TCTGAACCAGGCCACCTAAT+GGG | 0.429682 | 8.4:+54804096 | None:intergenic |
CAGAGGAATCATAAATTCAA+AGG | 0.441039 | 8.4:+54804539 | None:intergenic |
AGAGCACACTTGCTTACTAA+TGG | 0.459202 | 8.4:-54805122 | MS.gene066909:CDS |
AACTGAGTAGTCTTTCTCAA+TGG | 0.461873 | 8.4:+54804500 | None:intergenic |
AATAGGTATGGTACAATAGT+TGG | 0.463172 | 8.4:-54804135 | MS.gene066909:intron |
ATTGATCCCATTAGGTGGCC+TGG | 0.478400 | 8.4:-54804102 | MS.gene066909:CDS |
TGTTATTGTAGGGGAGAGAA+TGG | 0.481096 | 8.4:-54804867 | MS.gene066909:intron |
ATGAAGATATTGATCCCATT+AGG | 0.481523 | 8.4:-54804110 | MS.gene066909:CDS |
CACACTTGCTTACTAATGGT+TGG | 0.485940 | 8.4:-54805118 | MS.gene066909:CDS |
AGAGGAATCATAAATTCAAA+GGG | 0.491970 | 8.4:+54804540 | None:intergenic |
AAACATTCAACTTGGAGCAT+TGG | 0.497605 | 8.4:-54804763 | MS.gene066909:CDS |
TGCATGAATCTCCAGGAAGA+AGG | 0.528511 | 8.4:+54805072 | None:intergenic |
AGGACATGCATGGAATTGAA+TGG | 0.531700 | 8.4:-54806020 | MS.gene066909:CDS |
TCCATGTCCAATACCACCCT+TGG | 0.536464 | 8.4:-54804704 | MS.gene066909:intron |
ATCTTGCATTGGTGGTTGAA+GGG | 0.538894 | 8.4:+54806053 | None:intergenic |
TCAAGTCAAAACATTCAACT+TGG | 0.553845 | 8.4:-54804771 | MS.gene066909:CDS |
ATTGAGAAAGACTACTCAGT+TGG | 0.556162 | 8.4:-54804498 | MS.gene066909:CDS |
TAAACTAAAACAAACCAGAT+GGG | 0.562205 | 8.4:+54806588 | None:intergenic |
TTCGCCACTAGATCTTGCAT+TGG | 0.562318 | 8.4:+54806042 | None:intergenic |
ATACATCTCCATTCTGAACC+AGG | 0.563789 | 8.4:+54804084 | None:intergenic |
TTCAGAATGGAGATGTATCA+AGG | 0.571681 | 8.4:-54804079 | MS.gene066909:intron |
TACATTATTTCCATTGCTCG+AGG | 0.574951 | 8.4:-54807060 | MS.gene066909:intron |
AAATAACTAACCTCGAGCAA+TGG | 0.576524 | 8.4:+54807050 | None:intergenic |
TTAGGTGGCCTGGTTCAGAA+TGG | 0.591720 | 8.4:-54804092 | MS.gene066909:CDS |
AGACTACTCAGTTGGAAGGA+GGG | 0.596500 | 8.4:-54804490 | MS.gene066909:CDS |
ACCAAGGGTGGTATTGGACA+TGG | 0.602110 | 8.4:+54804703 | None:intergenic |
AAGACTACTCAGTTGGAAGG+AGG | 0.602756 | 8.4:-54804491 | MS.gene066909:CDS |
AGAAAGACTACTCAGTTGGA+AGG | 0.604367 | 8.4:-54804494 | MS.gene066909:CDS |
AATGCAAGATCTAGTGGCGA+AGG | 0.612003 | 8.4:-54806040 | MS.gene066909:CDS |
AACTTCCAATAGAAACAGCA+TGG | 0.614686 | 8.4:+54804730 | None:intergenic |
ACCACCAATGCAAGATCTAG+TGG | 0.615505 | 8.4:-54806046 | MS.gene066909:CDS |
CATTGGTATCTCACCAAGGG+TGG | 0.616532 | 8.4:+54804691 | None:intergenic |
AAGTTGAAGGATGTCCAAGA+AGG | 0.624899 | 8.4:-54804452 | MS.gene066909:intron |
AAACTAAAACAAACCAGATG+GGG | 0.640336 | 8.4:+54806589 | None:intergenic |
AAGATATTGATCCCATTAGG+TGG | 0.658591 | 8.4:-54804107 | MS.gene066909:CDS |
TCAATGGAAACAAGTACACA+TGG | 0.685853 | 8.4:-54806652 | MS.gene066909:CDS |
CAGATGTTGTCTGAAGTTGA+AGG | 0.687407 | 8.4:-54804465 | MS.gene066909:CDS |
CTAGTGGCGAAGGACATGCA+TGG | 0.702589 | 8.4:-54806030 | MS.gene066909:CDS |
ATGGAAACAAGTACACATGG+TGG | 0.710626 | 8.4:-54806649 | MS.gene066909:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTAATTTAAATAAAATTA+TGG | + | chr8.4:54804121-54804140 | None:intergenic | 0.0% |
!! | AAAAAATCATAAATTCTATA+CGG | - | chr8.4:54804722-54804741 | MS.gene066909:CDS | 10.0% |
!! | AAAATGAATAATAATGTTAT+TGG | + | chr8.4:54806016-54806035 | None:intergenic | 10.0% |
!! | AAATAAAATAGTTGTAATTT+GGG | + | chr8.4:54805733-54805752 | None:intergenic | 10.0% |
!! | GAAAAAACAAAAATAAAATA+CGG | + | chr8.4:54805381-54805400 | None:intergenic | 10.0% |
!!! | AATTTATGATTTTTTATGTT+TGG | + | chr8.4:54804717-54804736 | None:intergenic | 10.0% |
!! | AAAGTAGAAAAAAACTTAAA+AGG | - | chr8.4:54805566-54805585 | MS.gene066909:intron | 15.0% |
!! | AGAAAAAAAAACATAAAACT+GGG | + | chr8.4:54805708-54805727 | None:intergenic | 15.0% |
!! | ATATACAATAACATTATCAA+AGG | + | chr8.4:54804407-54804426 | None:intergenic | 15.0% |
!! | ATTTCAAATTGTAAAATCAT+TGG | + | chr8.4:54806279-54806298 | None:intergenic | 15.0% |
!! | CTGTAAATAATATACTTATT+TGG | - | chr8.4:54803824-54803843 | MS.gene066909:intron | 15.0% |
!! | GAAATAAAATAGTTGTAATT+TGG | + | chr8.4:54805734-54805753 | None:intergenic | 15.0% |
!! | GTATTTACTAAAATTCATAT+GGG | + | chr8.4:54806646-54806665 | None:intergenic | 15.0% |
!! | TGTATTTACTAAAATTCATA+TGG | + | chr8.4:54806647-54806666 | None:intergenic | 15.0% |
!!! | AAAAATAAACGACAAATTTT+TGG | + | chr8.4:54804825-54804844 | None:intergenic | 15.0% |
!!! | ATATCTGTTTTATTTGATAA+AGG | + | chr8.4:54807107-54807126 | None:intergenic | 15.0% |
!!! | CATTAATTGTTTTACTTAAT+AGG | - | chr8.4:54806798-54806817 | MS.gene066909:intron | 15.0% |
!!! | TATCTGTTTTATTTGATAAA+GGG | + | chr8.4:54807106-54807125 | None:intergenic | 15.0% |
!!! | TTTGTTTTTTCTTTTTTTGA+GGG | - | chr8.4:54805390-54805409 | MS.gene066909:intron | 15.0% |
!!! | TTTTCTCTGAAAAAATTTAA+TGG | + | chr8.4:54805640-54805659 | None:intergenic | 15.0% |
!!! | TTTTGTTTTTTCTTTTTTTG+AGG | - | chr8.4:54805389-54805408 | MS.gene066909:intron | 15.0% |
!! | AAAACTTAAAACGACTTAAT+TGG | - | chr8.4:54805171-54805190 | MS.gene066909:intron | 20.0% |
!! | AAAGGAAAAATATGTATAAG+AGG | + | chr8.4:54805429-54805448 | None:intergenic | 20.0% |
!! | AAGGAAAAATATGTATAAGA+GGG | + | chr8.4:54805428-54805447 | None:intergenic | 20.0% |
!! | AATTAACTTAAAGACCTAAA+TGG | - | chr8.4:54805231-54805250 | MS.gene066909:intron | 20.0% |
!! | ACAAAAATTTGTAATTCTAC+AGG | + | chr8.4:54804527-54804546 | None:intergenic | 20.0% |
!! | ACAATTCTTATGTTATTGTA+GGG | - | chr8.4:54806073-54806092 | MS.gene066909:intron | 20.0% |
!! | ATATACTTATTTGGTATTGT+AGG | - | chr8.4:54803833-54803852 | MS.gene066909:intron | 20.0% |
!! | ATCATAATGTCAAATTACTA+TGG | - | chr8.4:54806523-54806542 | MS.gene066909:intron | 20.0% |
!! | ATGATACTTATAGTCTATAA+AGG | - | chr8.4:54806746-54806765 | MS.gene066909:intron | 20.0% |
!! | ATGTATTAACTAAAACATCA+TGG | + | chr8.4:54806934-54806953 | None:intergenic | 20.0% |
!! | CAAAAATTTGTAATTCTACA+GGG | + | chr8.4:54804526-54804545 | None:intergenic | 20.0% |
!! | CTGTTTCATATAAATAGAAA+GGG | - | chr8.4:54805079-54805098 | MS.gene066909:CDS | 20.0% |
!! | GAGAAAAAAAAACATAAAAC+TGG | + | chr8.4:54805709-54805728 | None:intergenic | 20.0% |
!! | TAAATTCATAAAAATATGCG+AGG | + | chr8.4:54804582-54804601 | None:intergenic | 20.0% |
!! | TCTGTTTCATATAAATAGAA+AGG | - | chr8.4:54805078-54805097 | MS.gene066909:CDS | 20.0% |
!! | TGTATTAACTAAAACATCAT+GGG | + | chr8.4:54806933-54806952 | None:intergenic | 20.0% |
!! | TGTTTCATATAAATAGAAAG+GGG | - | chr8.4:54805080-54805099 | MS.gene066909:CDS | 20.0% |
!! | TTTATTTCATTGTATTCCAT+GGG | - | chr8.4:54805933-54805952 | MS.gene066909:intron | 20.0% |
!!! | AATATAATTTGGGTTATTAC+TGG | - | chr8.4:54804187-54804206 | MS.gene066909:intron | 20.0% |
!!! | ATACTTAACTTTTTTAACGA+GGG | - | chr8.4:54807125-54807144 | MS.gene066909:intron | 20.0% |
!!! | ATTGTTTTACTTAATAGGTA+TGG | - | chr8.4:54806803-54806822 | MS.gene066909:intron | 20.0% |
!!! | CAACTATTTTATTTCAAGAA+TGG | - | chr8.4:54805739-54805758 | MS.gene066909:intron | 20.0% |
!!! | GTCGTTTTTATAAAAAAGTA+TGG | + | chr8.4:54804006-54804025 | None:intergenic | 20.0% |
!!! | TATACTTAACTTTTTTAACG+AGG | - | chr8.4:54807124-54807143 | MS.gene066909:intron | 20.0% |
!!! | TTTTATTTCATTGTATTCCA+TGG | - | chr8.4:54805932-54805951 | MS.gene066909:intron | 20.0% |
! | AAATACGGAAAACAAAAGTT+AGG | + | chr8.4:54805366-54805385 | None:intergenic | 25.0% |
! | AAATGGTACCAAAAAAACTA+AGG | - | chr8.4:54805248-54805267 | MS.gene066909:intron | 25.0% |
! | AATACACATATACACAATGA+AGG | + | chr8.4:54804478-54804497 | None:intergenic | 25.0% |
! | AGAGGAATCATAAATTCAAA+GGG | + | chr8.4:54806413-54806432 | None:intergenic | 25.0% |
! | AGGAAAAATATGTATAAGAG+GGG | + | chr8.4:54805427-54805446 | None:intergenic | 25.0% |
! | AGTCCTTATAAAGCAAAATA+AGG | - | chr8.4:54804662-54804681 | MS.gene066909:intron | 25.0% |
! | ATAAACTAAAACAAACCAGA+TGG | + | chr8.4:54804366-54804385 | None:intergenic | 25.0% |
! | ATATATATATTATGGGTGAG+CGG | - | chr8.4:54805455-54805474 | MS.gene066909:intron | 25.0% |
! | ATTTAATTACATCTCCTCTT+AGG | - | chr8.4:54806983-54807002 | MS.gene066909:intron | 25.0% |
! | ATTTCATACCAAATATTGAG+AGG | - | chr8.4:54807015-54807034 | MS.gene066909:intron | 25.0% |
! | CAATTCTTATGTTATTGTAG+GGG | - | chr8.4:54806074-54806093 | MS.gene066909:intron | 25.0% |
! | GACAATTCTTATGTTATTGT+AGG | - | chr8.4:54806072-54806091 | MS.gene066909:intron | 25.0% |
! | GTGTATATGTGTATTATACA+AGG | - | chr8.4:54804483-54804502 | MS.gene066909:CDS | 25.0% |
! | GTTTCATATAAATAGAAAGG+GGG | - | chr8.4:54805081-54805100 | MS.gene066909:CDS | 25.0% |
! | TAAACTAAAACAAACCAGAT+GGG | + | chr8.4:54804365-54804384 | None:intergenic | 25.0% |
! | TAATGGCTAAATTACATCAA+AGG | + | chr8.4:54805623-54805642 | None:intergenic | 25.0% |
! | TGTCTTTGTTACATTGTTAT+AGG | - | chr8.4:54804868-54804887 | MS.gene066909:intron | 25.0% |
! | TTAAAACGACTTAATTGGTA+TGG | - | chr8.4:54805176-54805195 | MS.gene066909:intron | 25.0% |
! | TTATGTCATAGAAATTTACG+TGG | - | chr8.4:54806050-54806069 | MS.gene066909:CDS | 25.0% |
! | TTATTTGATAAAGGGAGAAT+TGG | + | chr8.4:54807098-54807117 | None:intergenic | 25.0% |
! | TTTCATACCAAATATTGAGA+GGG | - | chr8.4:54807016-54807035 | MS.gene066909:intron | 25.0% |
! | TTTCATATAAATAGAAAGGG+GGG | - | chr8.4:54805082-54805101 | MS.gene066909:CDS | 25.0% |
!! | AAAATTTTATGCGTAGTTGT+GGG | - | chr8.4:54803730-54803749 | MS.gene066909:intron | 25.0% |
!! | AAATGAATTTTTGAATCCCA+TGG | + | chr8.4:54805952-54805971 | None:intergenic | 25.0% |
!! | AATTTTCGACATATTTATCG+TGG | - | chr8.4:54804953-54804972 | MS.gene066909:intron | 25.0% |
!! | ACTAATACACATCTTTTGTA+GGG | - | chr8.4:54806382-54806401 | MS.gene066909:intron | 25.0% |
!! | ACTACGCATAAAATTTTAGA+AGG | + | chr8.4:54803727-54803746 | None:intergenic | 25.0% |
!! | TAAAATTTTATGCGTAGTTG+TGG | - | chr8.4:54803729-54803748 | MS.gene066909:intron | 25.0% |
!!! | AATGTATGCTGATTTTATTC+AGG | - | chr8.4:54805314-54805333 | MS.gene066909:intron | 25.0% |
!!! | AATTTTAATCTCTCTCAGTA+GGG | - | chr8.4:54804027-54804046 | MS.gene066909:intron | 25.0% |
!!! | ATGTATGCTGATTTTATTCA+GGG | - | chr8.4:54805315-54805334 | MS.gene066909:intron | 25.0% |
!!! | CATCCTTATTTTGCTTTATA+AGG | + | chr8.4:54804668-54804687 | None:intergenic | 25.0% |
!!! | TAATTTTAATCTCTCTCAGT+AGG | - | chr8.4:54804026-54804045 | MS.gene066909:intron | 25.0% |
!!! | TAGATCAACCTTAGTTTTTT+TGG | + | chr8.4:54805259-54805278 | None:intergenic | 25.0% |
!!! | TAGTTTTTTTGGTACCATTT+AGG | + | chr8.4:54805248-54805267 | None:intergenic | 25.0% |
!!! | TTTTTCTTTTTTTGAGGGTT+CGG | - | chr8.4:54805395-54805414 | MS.gene066909:intron | 25.0% |
!!! | TTTTTTCTTAATCAAGAGTG+AGG | + | chr8.4:54805546-54805565 | None:intergenic | 25.0% |
AAAACATAAAACTGGGAGAA+TGG | + | chr8.4:54805701-54805720 | None:intergenic | 30.0% | |
AAACTAAAACAAACCAGATG+GGG | + | chr8.4:54804364-54804383 | None:intergenic | 30.0% | |
AATAGGTATGGTACAATAGT+TGG | - | chr8.4:54806815-54806834 | MS.gene066909:intron | 30.0% | |
ACATCTTGAATTCATCTCTA+GGG | - | chr8.4:54804745-54804764 | MS.gene066909:CDS | 30.0% | |
AGAATGGTGAAATTGGTATT+GGG | - | chr8.4:54806099-54806118 | MS.gene066909:intron | 30.0% | |
AGAGAGATACATACATTCAT+CGG | + | chr8.4:54804782-54804801 | None:intergenic | 30.0% | |
ATGAAGATATTGATCCCATT+AGG | - | chr8.4:54806840-54806859 | MS.gene066909:intron | 30.0% | |
CAGAGGAATCATAAATTCAA+AGG | + | chr8.4:54806414-54806433 | None:intergenic | 30.0% | |
CTAAAAGAGCAGATTTCATT+AGG | + | chr8.4:54804265-54804284 | None:intergenic | 30.0% | |
GGAAAAATATGTATAAGAGG+GGG | + | chr8.4:54805426-54805445 | None:intergenic | 30.0% | |
TCAAGTCAAAACATTCAACT+TGG | - | chr8.4:54806179-54806198 | MS.gene066909:intron | 30.0% | |
TTAGAAGGCAAATGATAGTT+TGG | + | chr8.4:54803712-54803731 | None:intergenic | 30.0% | |
! | CACTAATACACATCTTTTGT+AGG | - | chr8.4:54806381-54806400 | MS.gene066909:intron | 30.0% |
! | GAGGTTAGTTATTTCGAATT+TGG | - | chr8.4:54803909-54803928 | MS.gene066909:intron | 30.0% |
! | GGTCAATCATAAACTCTTTT+AGG | + | chr8.4:54805027-54805046 | None:intergenic | 30.0% |
! | GTTAGTTATTTCGAATTTGG+TGG | - | chr8.4:54803912-54803931 | MS.gene066909:intron | 30.0% |
! | TTATTCAGGGGGATATTTTT+AGG | - | chr8.4:54805328-54805347 | MS.gene066909:intron | 30.0% |
! | TTTTAAACTCTCGTAGACAT+TGG | + | chr8.4:54805155-54805174 | None:intergenic | 30.0% |
!! | TATTCAGGGGGATATTTTTA+GGG | - | chr8.4:54805329-54805348 | MS.gene066909:intron | 30.0% |
!!! | TGTATGCTGATTTTATTCAG+GGG | - | chr8.4:54805316-54805335 | MS.gene066909:intron | 30.0% |
!!! | TTAACTTTTTTAACGAGGGT+TGG | - | chr8.4:54807129-54807148 | MS.gene066909:intron | 30.0% |
!!! | TTTTGACTTGATGATAGTTG+AGG | + | chr8.4:54806170-54806189 | None:intergenic | 30.0% |
AAACATTCAACTTGGAGCAT+TGG | - | chr8.4:54806187-54806206 | MS.gene066909:intron | 35.0% | |
AAATAACTAACCTCGAGCAA+TGG | + | chr8.4:54803903-54803922 | None:intergenic | 35.0% | |
AAATCATTGGTATCTCACCA+AGG | + | chr8.4:54806266-54806285 | None:intergenic | 35.0% | |
AACAAAAGTTAGGTAACCCA+TGG | + | chr8.4:54805356-54805375 | None:intergenic | 35.0% | |
AACTGAGTAGTCTTTCTCAA+TGG | + | chr8.4:54806453-54806472 | None:intergenic | 35.0% | |
AACTTCCAATAGAAACAGCA+TGG | + | chr8.4:54806223-54806242 | None:intergenic | 35.0% | |
AAGATATTGATCCCATTAGG+TGG | - | chr8.4:54806843-54806862 | MS.gene066909:intron | 35.0% | |
AATCATTGGTATCTCACCAA+GGG | + | chr8.4:54806265-54806284 | None:intergenic | 35.0% | |
ACAAAAATGCATGAATCTCC+AGG | + | chr8.4:54805888-54805907 | None:intergenic | 35.0% | |
AGTTGTGGGTGTTCAATTAA+AGG | - | chr8.4:54803744-54803763 | MS.gene066909:intron | 35.0% | |
ATAATCTTGGGAGATCCATA+GGG | + | chr8.4:54807062-54807081 | None:intergenic | 35.0% | |
ATCTTTACACTGTTCAGACA+CGG | - | chr8.4:54805282-54805301 | MS.gene066909:intron | 35.0% | |
ATTGAGAAAGACTACTCAGT+TGG | - | chr8.4:54806452-54806471 | MS.gene066909:intron | 35.0% | |
GACATCTTGAATTCATCTCT+AGG | - | chr8.4:54804744-54804763 | MS.gene066909:CDS | 35.0% | |
GAGAATGGTGAAATTGGTAT+TGG | - | chr8.4:54806098-54806117 | MS.gene066909:intron | 35.0% | |
GCAACAAGAATATGCATTAG+AGG | - | chr8.4:54804219-54804238 | MS.gene066909:intron | 35.0% | |
TACATTATTTCCATTGCTCG+AGG | - | chr8.4:54803890-54803909 | MS.gene066909:intron | 35.0% | |
TAGTAAGTTGCTCACTTCAA+TGG | - | chr8.4:54804282-54804301 | MS.gene066909:intron | 35.0% | |
TCAATGGAAACAAGTACACA+TGG | - | chr8.4:54804298-54804317 | MS.gene066909:intron | 35.0% | |
TGACATTATGATCACCTTCT+TGG | + | chr8.4:54806515-54806534 | None:intergenic | 35.0% | |
TGCATGACGAGTAGTTATAT+AGG | + | chr8.4:54805048-54805067 | None:intergenic | 35.0% | |
TTCAGAATGGAGATGTATCA+AGG | - | chr8.4:54806871-54806890 | MS.gene066909:intron | 35.0% | |
! | AACTCTAAAAACCTTCTTCC+TGG | - | chr8.4:54805867-54805886 | MS.gene066909:intron | 35.0% |
! | GAGATTCATGCATTTTTGTC+AGG | - | chr8.4:54805889-54805908 | MS.gene066909:intron | 35.0% |
! | GAGGCAATTTTGTGCATATA+TGG | + | chr8.4:54806151-54806170 | None:intergenic | 35.0% |
!!! | ATTCAGGGGGATATTTTTAG+GGG | - | chr8.4:54805330-54805349 | MS.gene066909:intron | 35.0% |
!!! | GTATGCTGATTTTATTCAGG+GGG | - | chr8.4:54805317-54805336 | MS.gene066909:intron | 35.0% |
AAGTTGAAGGATGTCCAAGA+AGG | - | chr8.4:54806498-54806517 | MS.gene066909:intron | 40.0% | |
AATGCCCTTCAGCATAATCT+TGG | + | chr8.4:54807075-54807094 | None:intergenic | 40.0% | |
AGAAAGACTACTCAGTTGGA+AGG | - | chr8.4:54806456-54806475 | MS.gene066909:intron | 40.0% | |
AGAGCACACTTGCTTACTAA+TGG | - | chr8.4:54805828-54805847 | MS.gene066909:intron | 40.0% | |
AGGACATGCATGGAATTGAA+TGG | - | chr8.4:54804930-54804949 | MS.gene066909:intron | 40.0% | |
ATACATCTCCATTCTGAACC+AGG | + | chr8.4:54806869-54806888 | None:intergenic | 40.0% | |
ATATTGAGAGGGTTTGTCCA+TGG | - | chr8.4:54807027-54807046 | MS.gene066909:intron | 40.0% | |
ATCTCCCAAGATTATGCTGA+AGG | - | chr8.4:54807067-54807086 | MS.gene066909:CDS | 40.0% | |
ATGCCCTTCAGCATAATCTT+GGG | + | chr8.4:54807074-54807093 | None:intergenic | 40.0% | |
ATGGAAACAAGTACACATGG+TGG | - | chr8.4:54804301-54804320 | MS.gene066909:intron | 40.0% | |
CACACTTGCTTACTAATGGT+TGG | - | chr8.4:54805832-54805851 | MS.gene066909:intron | 40.0% | |
CATAATCTTGGGAGATCCAT+AGG | + | chr8.4:54807063-54807082 | None:intergenic | 40.0% | |
GGACAAACCCTCTCAATATT+TGG | + | chr8.4:54807026-54807045 | None:intergenic | 40.0% | |
GTGTCTGAACAGTGTAAAGA+TGG | + | chr8.4:54805283-54805302 | None:intergenic | 40.0% | |
TCTCCCAAGATTATGCTGAA+GGG | - | chr8.4:54807068-54807087 | MS.gene066909:CDS | 40.0% | |
TGTTATTGTAGGGGAGAGAA+TGG | - | chr8.4:54806083-54806102 | MS.gene066909:intron | 40.0% | |
! | AGAGGATTTGAGTTCCTTGA+AGG | - | chr8.4:54805479-54805498 | MS.gene066909:intron | 40.0% |
! | ATCTTGCATTGGTGGTTGAA+GGG | + | chr8.4:54804900-54804919 | None:intergenic | 40.0% |
! | CAGATGTTGTCTGAAGTTGA+AGG | - | chr8.4:54806485-54806504 | MS.gene066909:intron | 40.0% |
! | CATCTATCTGCATGTTGCTT+TGG | + | chr8.4:54804337-54804356 | None:intergenic | 40.0% |
! | GACTCAGCATAAGTTTTCAG+AGG | + | chr8.4:54806431-54806450 | None:intergenic | 40.0% |
!! | GTTGTCCATGCTGTTTCTAT+TGG | - | chr8.4:54806215-54806234 | MS.gene066909:intron | 40.0% |
!!! | AAATAGAAAGGGGGGTGTTT+TGG | - | chr8.4:54805090-54805109 | MS.gene066909:CDS | 40.0% |
!!! | AATAGAAAGGGGGGTGTTTT+GGG | - | chr8.4:54805091-54805110 | MS.gene066909:CDS | 40.0% |
!!! | CTTTTTTTGAGGGTTCGGTT+TGG | - | chr8.4:54805400-54805419 | MS.gene066909:intron | 40.0% |
AAGACTACTCAGTTGGAAGG+AGG | - | chr8.4:54806459-54806478 | MS.gene066909:intron | 45.0% | |
AATGCAAGATCTAGTGGCGA+AGG | - | chr8.4:54804910-54804929 | MS.gene066909:intron | 45.0% | |
ACATCTCCTCTTAGGTGCAA+TGG | - | chr8.4:54806991-54807010 | MS.gene066909:intron | 45.0% | |
ACCACCAATGCAAGATCTAG+TGG | - | chr8.4:54804904-54804923 | MS.gene066909:intron | 45.0% | |
AGACTACTCAGTTGGAAGGA+GGG | - | chr8.4:54806460-54806479 | MS.gene066909:intron | 45.0% | |
AGATAGATGCTTTCCCCATC+TGG | - | chr8.4:54804348-54804367 | MS.gene066909:intron | 45.0% | |
AGGGGAGAGAATGGTGAAAT+TGG | - | chr8.4:54806092-54806111 | MS.gene066909:intron | 45.0% | |
CATCTCCTCTTAGGTGCAAT+GGG | - | chr8.4:54806992-54807011 | MS.gene066909:intron | 45.0% | |
GAAATCCCATTGCACCTAAG+AGG | + | chr8.4:54807000-54807019 | None:intergenic | 45.0% | |
GAGGACAATCATGCACTTCA+TGG | - | chr8.4:54804238-54804257 | MS.gene066909:intron | 45.0% | |
GGAAGACATCAAAGAGTCGT+TGG | + | chr8.4:54805525-54805544 | None:intergenic | 45.0% | |
TACACTGTTCAGACACGGTT+TGG | - | chr8.4:54805287-54805306 | MS.gene066909:intron | 45.0% | |
TATCTCACCAAGGGTGGTAT+TGG | + | chr8.4:54806256-54806275 | None:intergenic | 45.0% | |
TGCATGAATCTCCAGGAAGA+AGG | + | chr8.4:54805881-54805900 | None:intergenic | 45.0% | |
TTCGCCACTAGATCTTGCAT+TGG | + | chr8.4:54804911-54804930 | None:intergenic | 45.0% | |
! | GATCTTGCATTGGTGGTTGA+AGG | + | chr8.4:54804901-54804920 | None:intergenic | 45.0% |
! | TTTGAGTTCCTTGAAGGTGC+CGG | - | chr8.4:54805485-54805504 | MS.gene066909:intron | 45.0% |
!! | TTGGGGTTGATGGTATGGAT+TGG | - | chr8.4:54805109-54805128 | MS.gene066909:CDS | 45.0% |
!!! | ATAGAAAGGGGGGTGTTTTG+GGG | - | chr8.4:54805092-54805111 | MS.gene066909:CDS | 45.0% |
!!! | GGGATATTTTTAGGGGCCAT+GGG | - | chr8.4:54805337-54805356 | MS.gene066909:intron | 45.0% |
!!! | GTGTTTTGGGGTTGATGGTA+TGG | - | chr8.4:54805104-54805123 | MS.gene066909:CDS | 45.0% |
!! | AAAAAAATTGAATATAATTT+GGG | - | chr8.4:54804177-54804196 | MS.gene066909:intron | 5.0% |
!! | TAAAAAAATTGAATATAATT+TGG | - | chr8.4:54804176-54804195 | MS.gene066909:intron | 5.0% |
!! | TAATATATATATAGAAAAAA+AGG | + | chr8.4:54805447-54805466 | None:intergenic | 5.0% |
!!! | TTTTTCTATATATATATTAT+GGG | - | chr8.4:54805448-54805467 | MS.gene066909:intron | 5.0% |
!!! | TTTTTTCTATATATATATTA+TGG | - | chr8.4:54805447-54805466 | MS.gene066909:intron | 5.0% |
AGTCGTTGGACATCCCAACT+AGG | + | chr8.4:54805511-54805530 | None:intergenic | 50.0% | |
ATATTATGGGTGAGCGGCAG+AGG | - | chr8.4:54805461-54805480 | MS.gene066909:intron | 50.0% | |
ATTGATCCCATTAGGTGGCC+TGG | - | chr8.4:54806848-54806867 | MS.gene066909:intron | 50.0% | |
CATTGGTATCTCACCAAGGG+TGG | + | chr8.4:54806262-54806281 | None:intergenic | 50.0% | |
GCCACTAGATCTTGCATTGG+TGG | + | chr8.4:54804908-54804927 | None:intergenic | 50.0% | |
TCCATGTCCAATACCACCCT+TGG | - | chr8.4:54806246-54806265 | MS.gene066909:intron | 50.0% | |
TCTGAACCAGGCCACCTAAT+GGG | + | chr8.4:54806857-54806876 | None:intergenic | 50.0% | |
TTAGGTGGCCTGGTTCAGAA+TGG | - | chr8.4:54806858-54806877 | MS.gene066909:intron | 50.0% | |
TTCTGAACCAGGCCACCTAA+TGG | + | chr8.4:54806858-54806877 | None:intergenic | 50.0% | |
TTGAGAGGGTTTGTCCATGG+TGG | - | chr8.4:54807030-54807049 | MS.gene066909:intron | 50.0% | |
! | ACCAAGGGTGGTATTGGACA+TGG | + | chr8.4:54806250-54806269 | None:intergenic | 50.0% |
! | ACTGTTCAGACACGGTTTGG+CGG | - | chr8.4:54805290-54805309 | MS.gene066909:intron | 50.0% |
!!! | GGGGATATTTTTAGGGGCCA+TGG | - | chr8.4:54805336-54805355 | MS.gene066909:intron | 50.0% |
CCATAGGGCTCAATCCACCA+TGG | + | chr8.4:54807047-54807066 | None:intergenic | 55.0% | |
CTAGTGGCGAAGGACATGCA+TGG | - | chr8.4:54804920-54804939 | MS.gene066909:intron | 55.0% | |
GTTGGACATCCCAACTAGGC+CGG | + | chr8.4:54805507-54805526 | None:intergenic | 55.0% | |
! | CTGTTCAGACACGGTTTGGC+GGG | - | chr8.4:54805291-54805310 | MS.gene066909:intron | 55.0% |
!! | CCATGGTGGATTGAGCCCTA+TGG | - | chr8.4:54807044-54807063 | MS.gene066909:intron | 55.0% |
!! | TTGAAGGTGCCGGCCTAGTT+GGG | - | chr8.4:54805495-54805514 | MS.gene066909:intron | 55.0% |
CAACTAGGCCGGCACCTTCA+AGG | + | chr8.4:54805496-54805515 | None:intergenic | 60.0% | |
!! | CTTGAAGGTGCCGGCCTAGT+TGG | - | chr8.4:54805494-54805513 | MS.gene066909:intron | 60.0% |
!!! | GGGGGGTGTTTTGGGGTTGA+TGG | - | chr8.4:54805099-54805118 | MS.gene066909:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 54803700 | 54807272 | 54803700 | ID=MS.gene066909 |
chr8.4 | mRNA | 54803700 | 54807272 | 54803700 | ID=MS.gene066909.t1;Parent=MS.gene066909 |
chr8.4 | exon | 54807207 | 54807272 | 54807207 | ID=MS.gene066909.t1.exon1;Parent=MS.gene066909.t1 |
chr8.4 | CDS | 54807207 | 54807272 | 54807207 | ID=cds.MS.gene066909.t1;Parent=MS.gene066909.t1 |
chr8.4 | exon | 54807061 | 54807117 | 54807061 | ID=MS.gene066909.t1.exon2;Parent=MS.gene066909.t1 |
chr8.4 | CDS | 54807061 | 54807117 | 54807061 | ID=cds.MS.gene066909.t1;Parent=MS.gene066909.t1 |
chr8.4 | exon | 54806603 | 54806752 | 54806603 | ID=MS.gene066909.t1.exon3;Parent=MS.gene066909.t1 |
chr8.4 | CDS | 54806603 | 54806752 | 54806603 | ID=cds.MS.gene066909.t1;Parent=MS.gene066909.t1 |
chr8.4 | exon | 54805998 | 54806082 | 54805998 | ID=MS.gene066909.t1.exon4;Parent=MS.gene066909.t1 |
chr8.4 | CDS | 54805998 | 54806082 | 54805998 | ID=cds.MS.gene066909.t1;Parent=MS.gene066909.t1 |
chr8.4 | exon | 54805062 | 54805152 | 54805062 | ID=MS.gene066909.t1.exon5;Parent=MS.gene066909.t1 |
chr8.4 | CDS | 54805062 | 54805152 | 54805062 | ID=cds.MS.gene066909.t1;Parent=MS.gene066909.t1 |
chr8.4 | exon | 54804705 | 54804878 | 54804705 | ID=MS.gene066909.t1.exon6;Parent=MS.gene066909.t1 |
chr8.4 | CDS | 54804705 | 54804878 | 54804705 | ID=cds.MS.gene066909.t1;Parent=MS.gene066909.t1 |
chr8.4 | exon | 54804453 | 54804569 | 54804453 | ID=MS.gene066909.t1.exon7;Parent=MS.gene066909.t1 |
chr8.4 | CDS | 54804453 | 54804569 | 54804453 | ID=cds.MS.gene066909.t1;Parent=MS.gene066909.t1 |
chr8.4 | exon | 54804080 | 54804152 | 54804080 | ID=MS.gene066909.t1.exon8;Parent=MS.gene066909.t1 |
chr8.4 | CDS | 54804080 | 54804152 | 54804080 | ID=cds.MS.gene066909.t1;Parent=MS.gene066909.t1 |
chr8.4 | exon | 54803700 | 54803705 | 54803700 | ID=MS.gene066909.t1.exon9;Parent=MS.gene066909.t1 |
chr8.4 | CDS | 54803700 | 54803705 | 54803700 | ID=cds.MS.gene066909.t1;Parent=MS.gene066909.t1 |
Gene Sequence |
Protein sequence |