AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene066923

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene066923.t1 MTR_8g046350 93.373 166 8 1 1 166 1 163 1.58e-111 314
MS.gene066923.t1 MTR_8g051580 62.712 177 63 1 1 174 1 177 5.69e-75 223
MS.gene066923.t1 MTR_1g047550 56.571 175 73 1 1 172 1 175 1.87e-65 198
MS.gene066923.t1 MTR_4g131030 54.054 185 65 1 1 165 1 185 2.20e-64 197
MS.gene066923.t1 MTR_8g079502 57.485 167 68 1 1 164 1 167 1.28e-62 191
MS.gene066923.t1 MTR_1g063160 53.714 175 78 1 1 172 1 175 3.73e-60 185
MS.gene066923.t1 MTR_1g054265 52.381 168 77 1 1 165 1 168 2.16e-56 175
MS.gene066923.t1 MTR_4g094632 36.747 166 86 5 1 161 1 152 3.17e-28 103
MS.gene066923.t1 MTR_3g080940 44.538 119 58 3 1 114 8 123 3.89e-26 99.4
MS.gene066923.t1 MTR_3g052870 39.456 147 68 3 2 141 9 141 6.74e-26 99.0
MS.gene066923.t1 MTR_1g105920 45.614 114 55 2 2 108 9 122 1.86e-25 98.2
MS.gene066923.t1 MTR_1g106070 42.982 114 58 2 2 108 9 122 1.19e-24 94.7
MS.gene066923.t1 MTR_3g052920 44.737 114 56 3 2 108 9 122 2.45e-24 95.1
MS.gene066923.t1 MTR_1g105910 43.590 117 59 2 2 111 9 125 7.60e-24 94.0
MS.gene066923.t1 MTR_5g045560 42.857 119 57 3 1 112 8 122 1.48e-23 93.2
MS.gene066923.t1 MTR_2g105290 36.765 136 76 3 1 133 11 139 1.95e-23 91.3
MS.gene066923.t1 MTR_2g030740 43.590 117 59 2 2 111 9 125 2.31e-23 92.8
MS.gene066923.t1 MTR_5g055100 54.545 77 35 0 2 78 9 85 4.21e-23 92.0
MS.gene066923.t1 MTR_3g030770 41.322 121 66 2 2 117 9 129 7.95e-23 91.3
MS.gene066923.t1 MTR_1g108580 46.392 97 47 1 2 93 9 105 9.92e-23 90.9
MS.gene066923.t1 MTR_1g077360 53.247 77 36 0 2 78 9 85 1.46e-22 90.5
MS.gene066923.t1 MTR_4g094638 51.316 76 37 0 1 76 1 76 1.70e-22 89.0
MS.gene066923.t1 MTR_8g043650 42.105 114 59 2 2 108 9 122 2.21e-22 90.1
MS.gene066923.t1 MTR_1g012570 41.463 123 60 2 2 112 9 131 2.45e-22 90.1
MS.gene066923.t1 MTR_1g108510 45.545 101 50 2 2 97 9 109 3.56e-22 89.4
MS.gene066923.t1 MTR_1g075600 54.545 77 35 0 2 78 9 85 3.62e-22 89.7
MS.gene066923.t1 MTR_2g093190 39.098 133 70 3 2 129 9 135 4.31e-22 89.4
MS.gene066923.t1 MTR_8g086290 35.766 137 80 4 2 136 12 142 2.03e-21 86.3
MS.gene066923.t1 MTR_5g053390 51.948 77 37 0 2 78 9 85 3.51e-21 87.0
MS.gene066923.t1 MTR_0121s0100 41.441 111 59 2 2 107 9 118 4.84e-21 84.0
MS.gene066923.t1 MTR_7g028448 37.037 108 55 2 17 114 27 131 5.64e-21 84.7
MS.gene066923.t1 MTR_4g036915 37.037 108 55 2 17 114 27 131 5.64e-21 84.7
MS.gene066923.t1 MTR_3g030780 49.351 77 39 0 2 78 9 85 6.19e-21 83.6
MS.gene066923.t1 MTR_2g085280 51.948 77 37 0 2 78 9 85 1.02e-20 85.9
MS.gene066923.t1 MTR_2g085250 51.948 77 37 0 2 78 9 85 1.05e-20 85.9
MS.gene066923.t1 MTR_0121s0080 35.065 154 85 2 2 140 9 162 1.08e-20 85.9
MS.gene066923.t1 MTR_1g105905 40.708 113 58 2 18 125 8 116 1.05e-19 82.8
MS.gene066923.t1 MTR_7g062350 55.556 63 28 0 16 78 35 97 2.20e-17 77.0
MS.gene066923.t1 MTR_4g127140 40.870 115 63 3 1 111 11 124 3.50e-17 75.5
MS.gene066923.t1 MTR_5g021270 48.387 62 32 0 1 62 1 62 7.93e-16 72.8
MS.gene066923.t1 MTR_5g021270 48.387 62 32 0 1 62 1 62 8.14e-16 72.8
MS.gene066923.t1 MTR_3g067875 60.417 48 19 0 18 65 8 55 1.31e-15 68.2
MS.gene066923.t1 MTR_8g087860 32.110 109 74 0 1 109 17 125 2.02e-15 71.6
MS.gene066923.t1 MTR_5g066180 43.056 72 41 0 1 72 1 72 2.81e-15 71.2
MS.gene066923.t1 MTR_0003s0590 44.928 69 38 0 1 69 1 69 3.40e-15 71.2
MS.gene066923.t1 MTR_1g053070 40.741 81 48 0 1 81 1 81 4.84e-15 70.9
MS.gene066923.t1 MTR_1g108500 63.830 47 17 0 18 64 113 159 8.43e-15 71.2
MS.gene066923.t1 MTR_5g031000 46.377 69 37 0 1 69 1 69 9.65e-15 69.7
MS.gene066923.t1 MTR_3g109930 33.607 122 69 3 17 133 17 131 1.00e-14 68.6
MS.gene066923.t1 MTR_8g033220 35.922 103 63 2 1 101 1 102 1.01e-14 69.7
MS.gene066923.t1 MTR_3g452380 44.928 69 38 0 1 69 16 84 1.03e-14 69.7
MS.gene066923.t1 MTR_5g031000 46.377 69 37 0 1 69 1 69 1.05e-14 69.7
MS.gene066923.t1 MTR_8g033220 35.922 103 63 2 1 101 1 102 1.22e-14 69.3
MS.gene066923.t1 MTR_2g009890 39.080 87 52 1 1 87 1 86 1.44e-14 70.1
MS.gene066923.t1 MTR_3g067910 45.902 61 33 0 18 78 6 66 1.74e-14 66.2
MS.gene066923.t1 MTR_2g017865 30.275 109 76 0 1 109 16 124 2.69e-14 68.9
MS.gene066923.t1 MTR_5g066960 50.000 60 30 0 1 60 1 60 4.15e-14 63.9
MS.gene066923.t1 MTR_7g075870 31.683 101 69 0 1 101 1 101 4.70e-14 67.4
MS.gene066923.t1 MTR_3g113030 45.833 72 37 1 1 72 1 70 8.65e-14 67.0
MS.gene066923.t1 MTR_4g093970 35.897 117 66 2 1 108 27 143 1.02e-13 67.0
MS.gene066923.t1 MTR_3g005530 39.130 69 42 0 1 69 1 69 1.35e-13 66.6
MS.gene066923.t1 MTR_4g102530 42.029 69 40 0 1 69 1 69 1.67e-13 65.9
MS.gene066923.t1 MTR_8g033270 40.580 69 41 0 1 69 1 69 3.01e-13 65.9
MS.gene066923.t1 MTR_7g075870 48.276 58 30 0 1 58 1 58 3.89e-13 65.1
MS.gene066923.t1 MTR_5g032150 38.095 84 51 1 1 84 1 83 4.47e-13 65.1
MS.gene066923.t1 MTR_5g032520 38.095 84 51 1 1 84 1 83 6.30e-13 64.7
MS.gene066923.t1 MTR_4g084740 43.662 71 39 1 1 70 1 71 1.02e-12 65.1
MS.gene066923.t1 MTR_1g101970 39.437 71 43 0 1 71 1 71 1.73e-12 62.8
MS.gene066923.t1 MTR_7g016600 44.262 61 34 0 1 61 1 61 2.09e-12 63.5
MS.gene066923.t1 MTR_3g437790 39.130 92 43 3 19 97 30 121 2.44e-12 62.4
MS.gene066923.t1 MTR_2g461710 43.860 57 32 0 1 57 1 57 2.61e-12 59.3
MS.gene066923.t1 MTR_4g093030 37.234 94 57 1 1 92 1 94 2.66e-12 62.0
MS.gene066923.t1 MTR_8g022970 33.871 124 68 3 2 122 15 127 3.51e-12 62.0
MS.gene066923.t1 MTR_1g038300 40.845 71 40 1 1 69 1 71 5.47e-12 62.4
MS.gene066923.t1 MTR_5g046870 45.614 57 31 0 1 57 1 57 6.32e-12 59.7
MS.gene066923.t1 MTR_1g029670 31.897 116 62 3 1 114 1 101 7.63e-12 61.2
MS.gene066923.t1 MTR_8g066260 37.500 72 42 1 1 72 1 69 8.14e-12 62.0
MS.gene066923.t1 MTR_5g046790 36.111 72 43 1 1 72 1 69 9.18e-12 61.2
MS.gene066923.t1 MTR_3g084980 47.368 57 30 0 1 57 1 57 9.27e-12 61.6
MS.gene066923.t1 MTR_3g102570 39.437 71 42 1 1 70 1 71 9.68e-12 62.4
MS.gene066923.t1 MTR_5g041650 46.296 54 29 0 1 54 38 91 1.25e-11 62.4
MS.gene066923.t1 MTR_8g097090 44.262 61 34 0 1 61 1 61 1.27e-11 61.2
MS.gene066923.t1 MTR_6g015975 45.614 57 31 0 1 57 1 57 1.42e-11 61.2
MS.gene066923.t1 MTR_4g109810 42.623 61 35 0 1 61 1 61 1.56e-11 61.2
MS.gene066923.t1 MTR_4g109830 31.915 94 51 2 1 81 1 94 1.59e-11 60.8
MS.gene066923.t1 MTR_4g036050 49.091 55 28 0 1 55 1 55 1.67e-11 60.5
MS.gene066923.t1 MTR_3g088615 36.923 65 41 0 1 65 1 65 1.70e-11 60.1
MS.gene066923.t1 MTR_7g016630 34.247 73 47 1 1 72 1 73 1.74e-11 61.2
MS.gene066923.t1 MTR_4g036050 49.091 55 28 0 1 55 1 55 1.81e-11 60.1
MS.gene066923.t1 MTR_4g036050 49.091 55 28 0 1 55 1 55 1.82e-11 60.5
MS.gene066923.t1 MTR_4g036050 49.091 55 28 0 1 55 1 55 1.91e-11 60.1
MS.gene066923.t1 MTR_3g067870 52.083 48 23 0 18 65 92 139 3.38e-11 58.9
MS.gene066923.t1 MTR_7g075850 44.262 61 34 0 1 61 1 61 4.62e-11 60.1
MS.gene066923.t1 MTR_1g041615 39.506 81 47 1 17 97 21 99 6.15e-11 57.8
MS.gene066923.t1 MTR_4g108720 28.571 133 68 2 1 106 1 133 8.69e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene066923.t1 AT2G34440 40.936 171 88 3 1 158 1 171 6.02e-35 120
MS.gene066923.t1 AT2G24840 45.455 121 61 2 1 117 62 181 4.99e-29 108
MS.gene066923.t1 AT3G66656 46.457 127 62 2 1 121 1 127 5.55e-29 105
MS.gene066923.t1 AT5G60440 43.056 144 67 5 2 136 7 144 4.94e-26 101
MS.gene066923.t1 AT4G36590 37.952 166 78 5 2 157 7 157 1.84e-23 93.2
MS.gene066923.t1 AT1G01530 38.158 152 86 3 1 148 6 153 1.79e-22 90.5
MS.gene066923.t1 AT1G65360 35.971 139 82 2 1 136 6 140 4.37e-21 86.7
MS.gene066923.t1 AT1G72350 39.669 121 66 3 2 122 43 156 2.10e-19 82.0
MS.gene066923.t1 AT1G47760 40.000 95 55 1 1 95 1 93 5.86e-19 80.1
MS.gene066923.t1 AT1G28460 47.826 69 36 0 2 70 8 76 2.29e-18 78.6
MS.gene066923.t1 AT1G29962 45.833 72 39 0 2 73 8 79 9.84e-18 77.0
MS.gene066923.t1 AT3G04100 44.737 76 39 1 2 74 14 89 2.28e-16 73.6
MS.gene066923.t1 AT4G22950 46.377 69 37 0 1 69 1 69 2.74e-16 72.8
MS.gene066923.t1 AT4G24540 34.483 87 57 0 1 87 1 87 4.44e-16 73.2
MS.gene066923.t1 AT2G22630 47.826 69 36 0 1 69 1 69 7.74e-16 72.8
MS.gene066923.t1 AT2G22630 47.826 69 36 0 1 69 1 69 7.74e-16 72.8
MS.gene066923.t1 AT3G57230 44.928 69 38 0 1 69 1 69 8.58e-16 70.9
MS.gene066923.t1 AT3G61120 40.964 83 47 1 1 81 1 83 9.50e-16 72.8
MS.gene066923.t1 AT3G57230 44.928 69 38 0 1 69 1 69 1.67e-15 72.0
MS.gene066923.t1 AT3G57230 44.928 69 38 0 1 69 1 69 1.67e-15 72.0
MS.gene066923.t1 AT5G65070 34.400 125 73 4 1 116 1 125 1.82e-15 70.1
MS.gene066923.t1 AT4G22950 46.377 69 37 0 1 69 1 69 1.87e-15 71.6
MS.gene066923.t1 AT4G22950 46.377 69 37 0 1 69 1 69 1.87e-15 71.6
MS.gene066923.t1 AT2G45660 33.333 105 70 0 1 105 1 105 1.98e-15 70.1
MS.gene066923.t1 AT2G22540 37.864 103 62 2 1 102 1 102 2.15e-15 71.6
MS.gene066923.t1 AT2G22540 37.864 103 62 2 1 102 1 102 2.15e-15 71.6
MS.gene066923.t1 AT3G57390 43.478 69 39 0 1 69 1 69 4.30e-15 70.9
MS.gene066923.t1 AT4G37940 46.377 69 37 0 1 69 1 69 4.59e-15 70.5
MS.gene066923.t1 AT1G17310 55.172 58 24 1 17 74 63 118 5.37e-15 70.1
MS.gene066923.t1 AT5G65070 38.298 94 56 1 1 94 1 92 5.37e-15 70.5
MS.gene066923.t1 AT4G37940 46.377 69 37 0 1 69 1 69 6.04e-15 70.1
MS.gene066923.t1 AT2G45660 33.333 105 70 0 1 105 1 105 6.11e-15 70.1
MS.gene066923.t1 AT1G17310 55.172 58 24 1 17 74 74 129 6.59e-15 70.1
MS.gene066923.t1 AT5G65070 34.286 140 85 5 1 134 1 139 6.70e-15 69.7
MS.gene066923.t1 AT3G57390 43.478 69 39 0 1 69 1 69 7.12e-15 70.5
MS.gene066923.t1 AT5G65070 38.298 94 56 1 1 94 1 92 7.35e-15 69.7
MS.gene066923.t1 AT4G37940 43.210 81 42 1 1 77 1 81 1.22e-14 68.6
MS.gene066923.t1 AT2G45650 42.029 69 40 0 1 69 1 69 1.68e-14 69.3
MS.gene066923.t1 AT4G09960 34.066 91 55 1 1 91 2 87 1.73e-14 68.9
MS.gene066923.t1 AT4G09960 34.066 91 55 1 1 91 1 86 1.76e-14 68.9
MS.gene066923.t1 AT4G09960 34.066 91 55 1 1 91 1 86 1.88e-14 68.9
MS.gene066923.t1 AT4G09960 34.066 91 55 1 1 91 11 96 2.79e-14 68.6
MS.gene066923.t1 AT5G13790 42.029 69 40 0 1 69 1 69 2.92e-14 68.9
MS.gene066923.t1 AT5G13790 42.029 69 40 0 1 69 1 69 2.95e-14 68.9
MS.gene066923.t1 AT1G28450 41.667 72 42 0 2 73 8 79 3.54e-14 67.4
MS.gene066923.t1 AT4G09960 34.066 91 55 1 1 91 27 112 4.09e-14 68.6
MS.gene066923.t1 AT4G09960 34.066 91 55 1 1 91 96 181 4.30e-14 68.9
MS.gene066923.t1 AT4G11880 49.180 61 31 0 1 61 1 61 6.66e-14 66.6
MS.gene066923.t1 AT4G11880 49.180 61 31 0 1 61 1 61 6.66e-14 66.6
MS.gene066923.t1 AT5G62165 30.400 125 76 1 1 125 1 114 6.92e-14 66.2
MS.gene066923.t1 AT5G62165 30.400 125 76 1 1 125 1 114 6.92e-14 66.2
MS.gene066923.t1 AT5G62165 30.400 125 76 1 1 125 1 114 6.92e-14 66.2
MS.gene066923.t1 AT5G65080 32.000 150 80 5 1 136 8 149 7.89e-14 66.6
MS.gene066923.t1 AT5G62165 30.400 125 76 1 1 125 1 114 1.08e-13 65.5
MS.gene066923.t1 AT5G62165 30.400 125 76 1 1 125 1 114 1.08e-13 65.5
MS.gene066923.t1 AT5G62165 30.400 125 76 1 1 125 1 114 1.08e-13 65.5
MS.gene066923.t1 AT5G62165 30.400 125 76 1 1 125 1 114 1.08e-13 65.5
MS.gene066923.t1 AT5G62165 30.400 125 76 1 1 125 1 114 1.08e-13 65.5
MS.gene066923.t1 AT5G10140 47.368 57 30 0 1 57 1 57 1.25e-13 65.5
MS.gene066923.t1 AT4G11880 49.180 61 31 0 1 61 1 61 1.77e-13 66.2
MS.gene066923.t1 AT4G11880 49.180 61 31 0 1 61 1 61 1.77e-13 66.2
MS.gene066923.t1 AT1G22130 46.479 71 37 1 1 70 1 71 1.79e-13 67.4
MS.gene066923.t1 AT3G54340 45.161 62 34 0 1 62 1 62 1.83e-13 66.2
MS.gene066923.t1 AT5G62165 30.400 125 76 1 1 125 1 114 1.98e-13 65.9
MS.gene066923.t1 AT5G62165 30.400 125 76 1 1 125 1 114 1.98e-13 65.9
MS.gene066923.t1 AT5G10140 47.368 57 30 0 1 57 1 57 2.07e-13 65.5
MS.gene066923.t1 AT5G10140 47.368 57 30 0 1 57 1 57 2.15e-13 65.5
MS.gene066923.t1 AT5G62165 30.400 125 76 1 1 125 1 114 2.17e-13 65.9
MS.gene066923.t1 AT5G62165 30.400 125 76 1 1 125 1 114 2.17e-13 65.9
MS.gene066923.t1 AT5G62165 30.400 125 76 1 1 125 1 114 2.17e-13 65.9
MS.gene066923.t1 AT5G10140 47.368 57 30 0 1 57 1 57 2.20e-13 65.5
MS.gene066923.t1 AT2G42830 40.580 69 41 0 1 69 16 84 2.62e-13 66.2
MS.gene066923.t1 AT2G42830 40.580 69 41 0 1 69 16 84 2.71e-13 66.2
MS.gene066923.t1 AT5G20240 43.939 66 37 0 1 66 1 66 3.15e-13 64.3
MS.gene066923.t1 AT5G62165 38.667 75 46 0 1 75 1 75 3.28e-13 63.2
MS.gene066923.t1 AT3G58780 40.580 69 41 0 1 69 16 84 3.45e-13 65.9
MS.gene066923.t1 AT3G58780 37.209 86 41 1 1 73 16 101 4.07e-13 65.5
MS.gene066923.t1 AT3G58780 35.106 94 56 2 1 94 22 110 4.11e-13 65.9
MS.gene066923.t1 AT4G18960 29.231 130 87 2 2 131 18 142 4.19e-13 65.5
MS.gene066923.t1 AT5G65070 44.828 58 32 0 1 58 1 58 4.62e-13 65.1
MS.gene066923.t1 AT5G65060 50.909 55 27 0 1 55 1 55 4.64e-13 64.7
MS.gene066923.t1 AT5G51870 39.130 69 42 0 1 69 1 69 5.24e-13 64.7
MS.gene066923.t1 AT5G51870 39.130 69 42 0 1 69 1 69 5.34e-13 63.9
MS.gene066923.t1 AT1G77980 45.070 71 38 1 1 70 1 71 5.56e-13 65.9
MS.gene066923.t1 AT1G18750 42.105 76 42 1 1 74 1 76 6.48e-13 65.9
MS.gene066923.t1 AT1G18750 42.105 76 42 1 1 74 1 76 6.61e-13 66.2
MS.gene066923.t1 AT3G58780 32.432 111 70 2 1 111 16 121 6.80e-13 65.5
MS.gene066923.t1 AT5G65050 49.091 55 28 0 1 55 1 55 7.16e-13 63.9
MS.gene066923.t1 AT1G18750 42.105 76 42 1 1 74 1 76 7.41e-13 65.9
MS.gene066923.t1 AT5G20240 43.939 66 37 0 1 66 1 66 7.62e-13 64.3
MS.gene066923.t1 AT2G22540 49.091 55 28 0 1 55 1 55 7.89e-13 64.7
MS.gene066923.t1 AT5G65060 50.909 55 27 0 1 55 1 55 7.91e-13 63.9
MS.gene066923.t1 AT5G51870 39.130 69 42 0 1 69 1 69 8.51e-13 64.3
MS.gene066923.t1 AT5G65060 50.909 55 27 0 1 55 1 55 8.76e-13 63.5
MS.gene066923.t1 AT5G51870 39.130 69 42 0 1 69 24 92 8.90e-13 63.9
MS.gene066923.t1 AT2G14210 47.541 61 32 0 1 61 1 61 1.26e-12 63.9
MS.gene066923.t1 AT5G51870 39.130 69 42 0 1 69 11 79 1.27e-12 63.9
MS.gene066923.t1 AT5G04640 31.126 151 77 3 3 149 5 132 1.34e-12 64.7
MS.gene066923.t1 AT1G60920 45.000 80 38 3 3 76 5 84 1.36e-12 63.2
MS.gene066923.t1 AT5G51860 40.580 69 41 0 1 69 1 69 1.43e-12 63.5
MS.gene066923.t1 AT2G14210 47.541 61 32 0 1 61 1 61 1.44e-12 63.9
MS.gene066923.t1 AT5G51860 40.580 69 41 0 1 69 1 69 1.52e-12 63.5
MS.gene066923.t1 AT1G69120 40.278 72 40 1 1 72 1 69 2.15e-12 63.5
MS.gene066923.t1 AT2G03710 49.123 57 29 0 1 57 1 57 2.18e-12 62.8
MS.gene066923.t1 AT5G23260 54.386 57 26 0 1 57 1 57 2.28e-12 63.5
MS.gene066923.t1 AT5G23260 54.386 57 26 0 1 57 1 57 2.41e-12 63.5
MS.gene066923.t1 AT5G23260 54.386 57 26 0 1 57 17 73 2.43e-12 63.5
MS.gene066923.t1 AT1G69540 41.333 75 43 1 1 74 1 75 2.44e-12 64.3
MS.gene066923.t1 AT5G23260 54.386 57 26 0 1 57 17 73 2.45e-12 63.5
MS.gene066923.t1 AT1G69540 41.333 75 43 1 1 74 1 75 2.53e-12 64.3
MS.gene066923.t1 AT1G69120 40.278 72 40 1 1 72 1 69 2.95e-12 63.5
MS.gene066923.t1 AT5G65050 49.091 55 28 0 1 55 1 55 3.14e-12 62.4
MS.gene066923.t1 AT5G65050 49.091 55 28 0 1 55 1 55 3.54e-12 62.0
MS.gene066923.t1 AT5G65050 49.091 55 28 0 1 55 1 55 3.64e-12 62.0
MS.gene066923.t1 AT1G77950 39.437 71 42 1 1 70 1 71 3.65e-12 63.2
MS.gene066923.t1 AT1G77950 39.437 71 42 1 1 70 1 71 3.65e-12 63.2
MS.gene066923.t1 AT1G77950 39.437 71 42 1 1 70 1 71 3.65e-12 63.2
MS.gene066923.t1 AT1G77950 39.437 71 42 1 1 70 1 71 3.65e-12 63.2
MS.gene066923.t1 AT1G71692 50.909 55 27 0 1 55 1 55 3.80e-12 62.4
MS.gene066923.t1 AT1G46408 45.679 81 37 4 1 74 1 81 4.09e-12 63.2
MS.gene066923.t1 AT5G49490 44.444 72 36 1 3 70 46 117 4.10e-12 63.2
MS.gene066923.t1 AT5G38620 43.056 72 37 1 3 70 6 77 4.36e-12 63.5
MS.gene066923.t1 AT2G03710 49.123 57 29 0 1 57 1 57 5.06e-12 62.8
MS.gene066923.t1 AT5G49420 42.857 77 39 2 3 74 8 84 5.14e-12 63.2
MS.gene066923.t1 AT2G03710 49.123 57 29 0 1 57 1 57 5.38e-12 62.8
MS.gene066923.t1 AT3G02310 45.902 61 33 0 1 61 1 61 5.56e-12 62.0
MS.gene066923.t1 AT5G65080 44.643 56 31 0 1 56 8 63 6.07e-12 61.6
MS.gene066923.t1 AT5G60910 37.500 72 42 1 1 72 1 69 6.11e-12 62.4
MS.gene066923.t1 AT3G30260 42.623 61 35 0 1 61 1 61 6.82e-12 62.4
MS.gene066923.t1 AT3G58780 44.262 61 34 0 1 61 16 76 7.32e-12 62.4
MS.gene066923.t1 AT5G15800 44.262 61 34 0 1 61 1 61 8.75e-12 62.0
MS.gene066923.t1 AT5G15800 44.262 61 34 0 1 61 1 61 1.26e-11 61.6
MS.gene066923.t1 AT3G02310 47.368 57 30 0 1 57 1 57 1.32e-11 61.6
MS.gene066923.t1 AT1G24260 44.262 61 34 0 1 61 1 61 1.61e-11 61.2
MS.gene066923.t1 AT1G26310 41.935 62 36 0 1 62 1 62 1.62e-11 61.2
MS.gene066923.t1 AT1G24260 44.262 61 34 0 1 61 1 61 1.64e-11 61.2
MS.gene066923.t1 AT1G24260 44.262 61 34 0 1 61 1 61 1.71e-11 61.2
MS.gene066923.t1 AT2G26320 44.262 61 34 0 1 61 17 77 1.90e-11 58.5
MS.gene066923.t1 AT2G03060 43.421 76 41 2 1 74 1 76 5.14e-11 60.5
MS.gene066923.t1 AT2G03060 43.421 76 41 2 1 74 1 76 5.14e-11 60.5
MS.gene066923.t1 AT2G03060 43.421 76 41 2 1 74 1 76 5.14e-11 60.5
MS.gene066923.t1 AT2G03060 43.421 76 41 2 1 74 1 76 5.18e-11 60.5

Find 49 sgRNAs with CRISPR-Local

Find 55 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGAATAAACCTTACTCTTT+TGG 0.260036 8.4:+54974684 MS.gene066923:CDS
GAATACAACAATAACAATTT+TGG 0.284019 8.4:-54974655 None:intergenic
CCATCACCTTCTCATGTTGT+TGG 0.285658 8.4:-54974806 None:intergenic
TGTTAGAGGAAGGGGTTTCT+AGG 0.312060 8.4:-54974770 None:intergenic
ATTAATGGAGCTCAAGGATA+TGG 0.358058 8.4:+54974929 MS.gene066923:CDS
GGAATGGAAAGATTCATTAA+TGG 0.365090 8.4:+54974914 MS.gene066923:CDS
ATTCCTTAGGCTGGCTGAGT+AGG 0.404026 8.4:-54974896 None:intergenic
GTTCAGATCCTCTATGTTAG+AGG 0.416449 8.4:-54974784 None:intergenic
ACATTCTCAAAGCGCCGAAT+GGG 0.416565 8.4:+54974591 MS.gene066923:CDS
TTCTAGGACATCGTTTAGAT+CGG 0.426926 8.4:-54974754 None:intergenic
TGATATAGCTAAGGCTGAAA+AGG 0.429400 8.4:+54974830 MS.gene066923:CDS
ATCCTCTATGTTAGAGGAAG+GGG 0.442115 8.4:-54974778 None:intergenic
GTTATTGTTGTATTCTCTCC+CGG 0.443926 8.4:+54974663 MS.gene066923:CDS
AATCTTTCCATTCCTTAGGC+TGG 0.454254 8.4:-54974905 None:intergenic
AAAAGAGTAAGGTTTATTCC+CGG 0.457419 8.4:-54974682 None:intergenic
AATGTGACTTGTCTCGCCTC+TGG 0.460805 8.4:-54974573 None:intergenic
TCTAGGACATCGTTTAGATC+GGG 0.468128 8.4:-54974753 None:intergenic
TTCCTTAGGCTGGCTGAGTA+GGG 0.493210 8.4:-54974895 None:intergenic
CACATTCTCAAAGCGCCGAA+TGG 0.503482 8.4:+54974590 MS.gene066923:CDS
CTCGCAAAGGAGCCCGTGGT+TGG 0.507286 8.4:+54974999 MS.gene066923:CDS
CTAGGGTGGCCAAAAGAGTA+AGG 0.515417 8.4:-54974693 None:intergenic
AATGAATCTTTCCATTCCTT+AGG 0.516915 8.4:-54974909 None:intergenic
AGATTCATTAATGGAGCTCA+AGG 0.527990 8.4:+54974923 MS.gene066923:CDS
GATGCTAAAAGAATACAAAT+CGG 0.528959 8.4:+54974872 MS.gene066923:CDS
TAAGGCTGAAAAGGAAGATA+AGG 0.530489 8.4:+54974839 MS.gene066923:CDS
AACGAGCTTGCCATCTTGTG+TGG 0.537015 8.4:+54974630 MS.gene066923:CDS
GGCCCTACTCAGCCAGCCTA+AGG 0.543600 8.4:+54974893 MS.gene066923:CDS
AAAGAGTAAGGTTTATTCCC+GGG 0.547640 8.4:-54974681 None:intergenic
ACAATTAACTCATTATGGGT+CGG 0.550393 8.4:+54974520 None:intergenic
CTCCTTTGCGAGGAGCATCA+TGG 0.550709 8.4:-54974988 None:intergenic
TTATTGTTGTATTCTCTCCC+GGG 0.551946 8.4:+54974664 MS.gene066923:CDS
CAACCACGGGCTCCTTTGCG+AGG 0.553129 8.4:-54974998 None:intergenic
AGATCCTCTATGTTAGAGGA+AGG 0.553792 8.4:-54974780 None:intergenic
GACGCAACAGCATCAACACT+AGG 0.554343 8.4:-54974711 None:intergenic
GATCCTCTATGTTAGAGGAA+GGG 0.555228 8.4:-54974779 None:intergenic
AACCAAGTCACAGAAAAGAA+AGG 0.564249 8.4:+54975029 MS.gene066923:CDS
TACTCAGCCAGCCTAAGGAA+TGG 0.565385 8.4:+54974898 MS.gene066923:CDS
AACCCCTTCCTCTAACATAG+AGG 0.589339 8.4:+54974776 MS.gene066923:CDS
GGTGATGGCTGATATAGCTA+AGG 0.598086 8.4:+54974821 MS.gene066923:CDS
GCTCCTCGCAAAGGAGCCCG+TGG 0.600673 8.4:+54974995 MS.gene066923:CDS
GTCCATGATGCTCCTCGCAA+AGG 0.601271 8.4:+54974986 MS.gene066923:CDS
TCTGAACCAACAACATGAGA+AGG 0.622910 8.4:+54974800 MS.gene066923:CDS
ACGAGCTTGCCATCTTGTGT+GGG 0.628479 8.4:+54974631 MS.gene066923:CDS
AAAGGAAGATAAGGCCAATG+AGG 0.632105 8.4:+54974848 MS.gene066923:CDS
ACGCAACAGCATCAACACTA+GGG 0.637833 8.4:-54974710 None:intergenic
CATTCTCAAAGCGCCGAATG+GGG 0.649352 8.4:+54974592 MS.gene066923:CDS
CCAACAACATGAGAAGGTGA+TGG 0.695579 8.4:+54974806 MS.gene066923:CDS
CAACAGCATCAACACTAGGG+TGG 0.697037 8.4:-54974707 None:intergenic
GCGCAAAATTGAGATGACGA+TGG 0.715155 8.4:+54974542 MS.gene066923:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAATACAACAATAACAATTT+TGG - chr8.4:54974658-54974677 None:intergenic 20.0%
! GATGCTAAAAGAATACAAAT+CGG + chr8.4:54974872-54974891 MS.gene066923:CDS 25.0%
AAAAGAGTAAGGTTTATTCC+CGG - chr8.4:54974685-54974704 None:intergenic 30.0%
AATGAATCTTTCCATTCCTT+AGG - chr8.4:54974912-54974931 None:intergenic 30.0%
GGAATGGAAAGATTCATTAA+TGG + chr8.4:54974914-54974933 MS.gene066923:CDS 30.0%
!! TTGGTTTTTAATTCCAACCA+CGG - chr8.4:54975015-54975034 None:intergenic 30.0%
!!! CTTTTTTGAATAACCCCATT+CGG - chr8.4:54974608-54974627 None:intergenic 30.0%
AAAGAGTAAGGTTTATTCCC+GGG - chr8.4:54974684-54974703 None:intergenic 35.0%
AACCAAGTCACAGAAAAGAA+AGG + chr8.4:54975029-54975048 MS.gene066923:CDS 35.0%
AGATTCATTAATGGAGCTCA+AGG + chr8.4:54974923-54974942 MS.gene066923:CDS 35.0%
ATTAATGGAGCTCAAGGATA+TGG + chr8.4:54974929-54974948 MS.gene066923:CDS 35.0%
GTTATTGTTGTATTCTCTCC+CGG + chr8.4:54974663-54974682 MS.gene066923:CDS 35.0%
TAAGGCTGAAAAGGAAGATA+AGG + chr8.4:54974839-54974858 MS.gene066923:CDS 35.0%
TGATATAGCTAAGGCTGAAA+AGG + chr8.4:54974830-54974849 MS.gene066923:CDS 35.0%
TTATTGTTGTATTCTCTCCC+GGG + chr8.4:54974664-54974683 MS.gene066923:CDS 35.0%
! GGGAATAAACCTTACTCTTT+TGG + chr8.4:54974684-54974703 MS.gene066923:CDS 35.0%
! TTCCTTTCTTTTCTGTGACT+TGG - chr8.4:54975034-54975053 None:intergenic 35.0%
! TTCTTTTAGCATCTCCTCAT+TGG - chr8.4:54974865-54974884 None:intergenic 35.0%
!! TGGTTTTTAATTCCAACCAC+GGG - chr8.4:54975014-54975033 None:intergenic 35.0%
!! TTCTAGGACATCGTTTAGAT+CGG - chr8.4:54974757-54974776 None:intergenic 35.0%
AAAGGAAGATAAGGCCAATG+AGG + chr8.4:54974848-54974867 MS.gene066923:CDS 40.0%
AATCTTTCCATTCCTTAGGC+TGG - chr8.4:54974908-54974927 None:intergenic 40.0%
AGATCCTCTATGTTAGAGGA+AGG - chr8.4:54974783-54974802 None:intergenic 40.0%
ATCCTCTATGTTAGAGGAAG+GGG - chr8.4:54974781-54974800 None:intergenic 40.0%
GATCCTCTATGTTAGAGGAA+GGG - chr8.4:54974782-54974801 None:intergenic 40.0%
GTTCAGATCCTCTATGTTAG+AGG - chr8.4:54974787-54974806 None:intergenic 40.0%
TCTGAACCAACAACATGAGA+AGG + chr8.4:54974800-54974819 MS.gene066923:CDS 40.0%
! TCTAGGACATCGTTTAGATC+GGG - chr8.4:54974756-54974775 None:intergenic 40.0%
!! AATTTTGGTCCCACACAAGA+TGG - chr8.4:54974643-54974662 None:intergenic 40.0%
AACCCCTTCCTCTAACATAG+AGG + chr8.4:54974776-54974795 MS.gene066923:CDS 45.0%
ACGCAACAGCATCAACACTA+GGG - chr8.4:54974713-54974732 None:intergenic 45.0%
CCAACAACATGAGAAGGTGA+TGG + chr8.4:54974806-54974825 MS.gene066923:CDS 45.0%
CCATCACCTTCTCATGTTGT+TGG - chr8.4:54974809-54974828 None:intergenic 45.0%
GACGATGGTGAAAAAACCAG+AGG + chr8.4:54974557-54974576 MS.gene066923:CDS 45.0%
GCGCAAAATTGAGATGACGA+TGG + chr8.4:54974542-54974561 MS.gene066923:CDS 45.0%
TGTTAGAGGAAGGGGTTTCT+AGG - chr8.4:54974773-54974792 None:intergenic 45.0%
! GGTGATGGCTGATATAGCTA+AGG + chr8.4:54974821-54974840 MS.gene066923:CDS 45.0%
!! ACATTCTCAAAGCGCCGAAT+GGG + chr8.4:54974591-54974610 MS.gene066923:CDS 45.0%
AACGAGCTTGCCATCTTGTG+TGG + chr8.4:54974630-54974649 MS.gene066923:CDS 50.0%
ACGAGCTTGCCATCTTGTGT+GGG + chr8.4:54974631-54974650 MS.gene066923:CDS 50.0%
CAACAGCATCAACACTAGGG+TGG - chr8.4:54974710-54974729 None:intergenic 50.0%
CTAGGGTGGCCAAAAGAGTA+AGG - chr8.4:54974696-54974715 None:intergenic 50.0%
GACGCAACAGCATCAACACT+AGG - chr8.4:54974714-54974733 None:intergenic 50.0%
TACTCAGCCAGCCTAAGGAA+TGG + chr8.4:54974898-54974917 MS.gene066923:CDS 50.0%
! AATGTGACTTGTCTCGCCTC+TGG - chr8.4:54974576-54974595 None:intergenic 50.0%
! ATTCCTTAGGCTGGCTGAGT+AGG - chr8.4:54974899-54974918 None:intergenic 50.0%
! TTCCTTAGGCTGGCTGAGTA+GGG - chr8.4:54974898-54974917 None:intergenic 50.0%
!! CACATTCTCAAAGCGCCGAA+TGG + chr8.4:54974590-54974609 MS.gene066923:CDS 50.0%
!! CATTCTCAAAGCGCCGAATG+GGG + chr8.4:54974592-54974611 MS.gene066923:CDS 50.0%
GTCCATGATGCTCCTCGCAA+AGG + chr8.4:54974986-54975005 MS.gene066923:CDS 55.0%
!! CTCCTTTGCGAGGAGCATCA+TGG - chr8.4:54974991-54975010 None:intergenic 55.0%
CAACCACGGGCTCCTTTGCG+AGG - chr8.4:54975001-54975020 None:intergenic 65.0%
CTCGCAAAGGAGCCCGTGGT+TGG + chr8.4:54974999-54975018 MS.gene066923:CDS 65.0%
GGCCCTACTCAGCCAGCCTA+AGG + chr8.4:54974893-54974912 MS.gene066923:CDS 65.0%
GCTCCTCGCAAAGGAGCCCG+TGG + chr8.4:54974995-54975014 MS.gene066923:CDS 70.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 54974534 54975061 54974534 ID=MS.gene066923
chr8.4 mRNA 54974534 54975061 54974534 ID=MS.gene066923.t1;Parent=MS.gene066923
chr8.4 exon 54974534 54975061 54974534 ID=MS.gene066923.t1.exon1;Parent=MS.gene066923.t1
chr8.4 CDS 54974534 54975061 54974534 ID=cds.MS.gene066923.t1;Parent=MS.gene066923.t1
Gene Sequence

>MS.gene066923

ATGGGTCGGCGCAAAATTGAGATGACGATGGTGAAAAAACCAGAGGCGAGACAAGTCACATTCTCAAAGCGCCGAATGGGGTTATTCAAAAAAGCAAACGAGCTTGCCATCTTGTGTGGGACCAAAATTGTTATTGTTGTATTCTCTCCCGGGAATAAACCTTACTCTTTTGGCCACCCTAGTGTTGATGCTGTTGCGTCTAAATTTCTTCAACAAGAGCCCGATCTAAACGATGTCCTAGAAACCCCTTCCTCTAACATAGAGGATCTGAACCAACAACATGAGAAGGTGATGGCTGATATAGCTAAGGCTGAAAAGGAAGATAAGGCCAATGAGGAGATGCTAAAAGAATACAAATCGGCCCTACTCAGCCAGCCTAAGGAATGGAAAGATTCATTAATGGAGCTCAAGGATATGGTAAAATCACGTCTTTGTGATTTAGATATATCACAGTCCATGATGCTCCTCGCAAAGGAGCCCGTGGTTGGAATTAAAAACCAAGTCACAGAAAAGAAAGGAAAATATTAA
Protein sequence

>MS.gene066923.t1

MGRRKIEMTMVKKPEARQVTFSKRRMGLFKKANELAILCGTKIVIVVFSPGNKPYSFGHPSVDAVASKFLQQEPDLNDVLETPSSNIEDLNQQHEKVMADIAKAEKEDKANEEMLKEYKSALLSQPKEWKDSLMELKDMVKSRLCDLDISQSMMLLAKEPVVGIKNQVTEKKGKY