AlfalfaGEDB | MS.gene066997

M. sativa cultivar XinJiangDaYe / MS.gene066997

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066997.t1	XP_013466255.2	94.7	990	51	1	1	990	1	989	0.00E+00	1883.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066997.t1	Q9S7G7	46.4	716	328	18	15	693	11	707	4.6e-151	537.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066997.t1	A0A396JN74	94.7	990	51	1	1	990	1	989	0.0e+00	1883.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene066997.t1	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066997.t1	MTR_1g026870	94.817	984	50	1	7	990	1	983	0.0	1892
MS.gene066997.t1	MTR_3g110028	56.080	995	289	31	17	984	12	885	0.0	952
MS.gene066997.t1	MTR_7g061330	75.419	179	43	1	23	201	10	187	2.90e-90	298
MS.gene066997.t1	MTR_7g061330	76.571	175	40	1	27	201	50	223	4.06e-90	299
MS.gene066997.t1	MTR_7g461410	76.571	175	40	1	27	201	50	223	4.06e-90	299
MS.gene066997.t1	MTR_5g010650	59.868	152	58	1	37	185	53	204	1.79e-56	203
MS.gene066997.t1	MTR_1g008970	42.105	209	59	4	29	194	5	194	7.10e-43	157
MS.gene066997.t1	MTR_7g037260	56.311	103	45	0	89	191	143	245	2.30e-38	147
MS.gene066997.t1	MTR_7g037260	40.625	96	56	1	39	134	145	239	5.10e-16	81.3
MS.gene066997.t1	MTR_3g077650	58.252	103	43	0	89	191	179	281	3.68e-38	149

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066997.t1	AT4G32730	41.171	1042	458	34	15	980	11	973	0.0	632
MS.gene066997.t1	AT4G32730	41.171	1042	458	34	15	980	11	973	0.0	632
MS.gene066997.t1	AT4G32730	41.171	1042	458	34	15	980	11	973	0.0	632
MS.gene066997.t1	AT4G32730	41.171	1042	458	34	15	980	11	973	0.0	632
MS.gene066997.t1	AT4G32730	46.761	710	286	20	15	668	11	684	0.0	548
MS.gene066997.t1	AT5G11510	37.055	1012	525	26	20	986	10	954	2.31e-175	536
MS.gene066997.t1	AT5G11510	37.055	1012	525	26	20	986	10	954	2.31e-175	536
MS.gene066997.t1	AT5G11510	37.055	1012	525	26	20	986	10	954	2.31e-175	536
MS.gene066997.t1	AT5G11510	40.508	669	334	13	20	668	10	634	1.57e-144	450
MS.gene066997.t1	AT5G11510	39.913	689	336	15	20	668	10	660	4.56e-142	444

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Find 200 sgRNAs with CRISPR-Local

Find 378 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGCAATGGACTCCTG+AGG	0.671854	1.3:-12805286	MS.gene066997:CDS
AAACAAGGAAGCATGGACTC+AGG	0.579770	1.3:-12803627	MS.gene066997:CDS
AAACTTGAACAATAGGAGCT+CGG	0.606050	1.3:-12801231	MS.gene066997:CDS
AAAGAAATTGGATTCTTACT+TGG	0.426445	1.3:-12803145	MS.gene066997:CDS
AAAGAAGCTACGACGCTATC+GGG	0.413664	1.3:-12800601	MS.gene066997:CDS
AAAGCTCCAGGGGAGAATTC+AGG	0.322278	1.3:-12801089	MS.gene066997:CDS
AAAGTGGTGATAACAAATCT+CGG	0.586169	1.3:+12801807	None:intergenic
AAAGTTAGAGCAGCATTACA+TGG	0.498752	1.3:-12805832	MS.gene066997:CDS
AAATGTGCACACAGAAAAGG+AGG	0.578768	1.3:-12802092	MS.gene066997:CDS
AACATTTACCTGGACGTATT+GGG	0.367354	1.3:-12804244	MS.gene066997:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAATGTACTTACCTTCC+AGG	+	chr1.3:12802469-12802488	None:intergenic	30.0%
AAAGTGGTGATAACAAATCT+CGG	+	chr1.3:12804195-12804214	None:intergenic	30.0%
AAATATTGCATGGAAAACGA+AGG	+	chr1.3:12805613-12805632	None:intergenic	30.0%
AACTTGACATGAAAAAATCG+GGG	+	chr1.3:12802718-12802737	None:intergenic	30.0%
AACTTTCTCTACACTATCAA+TGG	+	chr1.3:12800153-12800172	None:intergenic	30.0%
AACTTTCTTAAAGCAGTGTT+TGG	-	chr1.3:12801238-12801257	MS.gene066997:CDS	30.0%
AATGCTCTTGTGTTACATAT+TGG	+	chr1.3:12805693-12805712	None:intergenic	30.0%
ACAATGCTATTAAAAACCAC+TGG	-	chr1.3:12802817-12802836	MS.gene066997:CDS	30.0%
ACTTTCTCTACACTATCAAT+GGG	+	chr1.3:12800152-12800171	None:intergenic	30.0%
AGTAACTATAAAGACACAGA+AGG	+	chr1.3:12800331-12800350	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	12800107	12805914	12800107	ID=MS.gene066997
chr1.3	mRNA	12800107	12805914	12800107	ID=MS.gene066997.t1;Parent=MS.gene066997
chr1.3	exon	12805832	12805914	12805832	ID=MS.gene066997.t1.exon1;Parent=MS.gene066997.t1
chr1.3	CDS	12805832	12805914	12805832	ID=cds.MS.gene066997.t1;Parent=MS.gene066997.t1
chr1.3	exon	12805284	12805338	12805284	ID=MS.gene066997.t1.exon2;Parent=MS.gene066997.t1
chr1.3	CDS	12805284	12805338	12805284	ID=cds.MS.gene066997.t1;Parent=MS.gene066997.t1
chr1.3	exon	12805112	12805169	12805112	ID=MS.gene066997.t1.exon3;Parent=MS.gene066997.t1
chr1.3	CDS	12805112	12805169	12805112	ID=cds.MS.gene066997.t1;Parent=MS.gene066997.t1
chr1.3	exon	12804597	12804691	12804597	ID=MS.gene066997.t1.exon4;Parent=MS.gene066997.t1
chr1.3	CDS	12804597	12804691	12804597	ID=cds.MS.gene066997.t1;Parent=MS.gene066997.t1
chr1.3	exon	12804227	12804330	12804227	ID=MS.gene066997.t1.exon5;Parent=MS.gene066997.t1
chr1.3	CDS	12804227	12804330	12804227	ID=cds.MS.gene066997.t1;Parent=MS.gene066997.t1
chr1.3	exon	12803548	12803676	12803548	ID=MS.gene066997.t1.exon6;Parent=MS.gene066997.t1
chr1.3	CDS	12803548	12803676	12803548	ID=cds.MS.gene066997.t1;Parent=MS.gene066997.t1
chr1.3	exon	12801487	12803209	12801487	ID=MS.gene066997.t1.exon7;Parent=MS.gene066997.t1
chr1.3	CDS	12801487	12803209	12801487	ID=cds.MS.gene066997.t1;Parent=MS.gene066997.t1
chr1.3	exon	12801047	12801369	12801047	ID=MS.gene066997.t1.exon8;Parent=MS.gene066997.t1
chr1.3	CDS	12801047	12801369	12801047	ID=cds.MS.gene066997.t1;Parent=MS.gene066997.t1
chr1.3	exon	12800744	12800855	12800744	ID=MS.gene066997.t1.exon9;Parent=MS.gene066997.t1
chr1.3	CDS	12800744	12800855	12800744	ID=cds.MS.gene066997.t1;Parent=MS.gene066997.t1
chr1.3	exon	12800448	12800654	12800448	ID=MS.gene066997.t1.exon10;Parent=MS.gene066997.t1
chr1.3	CDS	12800448	12800654	12800448	ID=cds.MS.gene066997.t1;Parent=MS.gene066997.t1
chr1.3	exon	12800107	12800190	12800107	ID=MS.gene066997.t1.exon11;Parent=MS.gene066997.t1
chr1.3	CDS	12800107	12800190	12800107	ID=cds.MS.gene066997.t1;Parent=MS.gene066997.t1

Gene Sequence

>MS.gene066997

ATGGACGGTGAACGAATAATCGCCGTTCCTCAGGGGGAAGGGCCCATTGATAGTGTAGAGAAAGTTAGAGCAGCATTACATGGGTAAGCATAAAACTCTCCAATCAGTTTCTTCTTTTGAATTTGTCTAGATTGGATGACAACTATGATTTTTAATGGAGAAATTGTATAATTCTCTCGATTAGCAAGAAAAGATTAGAGTGACCGGTTATTATCGACGCTCCTTCTGTGTCTTTATAGTTACTATGCATTATTGGTTGGTGTCTAGCACTTTTAGCCTCTTAATAATCGACATATTAGTCATTGAAGAGTTGCAAATTCTTTCTAAACGGAATGATATTTATAAACATGCTCTTTTCTAGTGGAAAAGTTACTGAATTGTAATAGGTGAGGAATGAAGATTGAAAAACTTCCTTGCACTGTTTGTGTCTTCCCATTTCATTGAATCACTGATGCTCAATTACTGATATTTGATAGGTGTGAGTTGTAGTAGCTAGCTATATTAAGTTTCTTCTTGTTTGAGACTTTGCTGATGGGGTTAAGGAAGTTTTTGCTAATCGTTAAAATCTATTTGTAGGAGGATTACTGGTCCTACAAGACGTTCTACAAAAGGGCAATGGACTCCTGAGGAGGTGATGTTATGGATACTCAAGCAACATAATATTTTTTTCCGTTTGATGATGATTTTTACTCATACTAGAAAATCTGAACTTGGTTTACCTTTATTTTTATGTTTTTTTCTTCAGGATGAGACATTACGAAAGGCTGTTCAGCGTTTCCAAGGAAAAAATTGGAAAAAAATTGGTAGCACATTGATGTTTGGACTTATTCATTATGATTATATATGAAATTATTTGTGACCTATCACCACTGCTTGCAGTATTAAGGGCACATTGCATCTGTCCATTCTTAAGTAATGTAACTCATAGACTTAATTCGTAGCGTGTTTCTTGTTACAAATTCGTAGACTTAATTGCATAAAAAACTTTGTCCTGTTGGGGTGACTTGTTCGTAGAGTGTTTGGTTTAAAGAGCACAAAACCAATCTTTAGGTCTTCAAAACCTGTTTTGTAGTTCTACTCTCTCATATTTCGTGGGCTATTGTTCTATGTGGGTTCATTTATCTACATGATAACTTTCTTAAAGCAGTGTTTGGCTTATGCATCTTTGTTTTGATTCATTTTGTTTCATAACTTGTCTAATTGCTACTTATGTGTGTCTGAAGCGGAGTGTTTCAAGGATAGAACTGATGTGCAATGCTTACATAGGTGGCAGAAAGTGTTGAATCCTGAGCTTGTTAAAGGGCCGTGGTCTAAAGAGGTAATCATATACGTTCCTTTTGTCTTGTGTCTAAAGAGGTAGTCATATACATTCCTTTTGTCTTGAGTTATTCTGATATCTCTATATGTAGAAGTGGTTCTTTCTCTCTTTTAGTTTTTATCTTACCTAACCATAATCCAATAACTGCTATTAAAGCTTCTTTGATCATGCTACAGTTCAATTCCTGTTTTCCACATTGTTTTGATGTTGCCTTGGATTATATCAACTTTCTAGTTAGATATTTACTAATCCTAATATGTTAATAGGAAGATGACGTGATGATTGAATTGGTGAACAAATATGGGCCTAAGAAATGGTCAACTATCGCACAACATTTACCTGGACGTATTGGGAAGCAATGTCGAGAAAGGTATGGCTTAGTTAGCGAGTATCTCATGATTATTTATCCTTACAACCTTGTTAGATTAACTGGAGAGTATCTCATGAGATTTATAATTGCATTTTAGAATATTTTAGAGTATCCCTATCCTTATAGCCTAGCTAGCGAGTTCGTAGAAATTTTTCTCTAACATCACTATTTTATCAATAATATTTTCATTTTATTAACTTTAAAATGTAGTTTAACTCGGTAAGCATATTAGATTTTGCAGAGAATGAAATTTAATTCTGCATTGAAATTTTGAAAATGGTTCTTACACTCTAGAGCAGTTACAGTTTTGTATTTACAGAGAAGCCTAGGACTAGCTAACTAAGGGACTTACCTACCAGACTAATTGCAAAATGGCTAAGCAAAAATAAATAATGAAATATAGAACCAGATGTAGAGTACTAGCAAACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACCGGATGGTGCACCTTTTATCAATAATAATTTCTAAAATCTTATTAGGTGGCATAATCATCTTAATCCTGCTATAAACAAGGAAGCATGGACTCAGGAAGAGGAGTTGGCTCTAATACGTGCTCATCAGATTTATGGGAACAAGTGGGCGGAATTAACGAAATTTTTGCCTGGAAGGTAAGTACATTTTTTATTATATTTCTATTGAGAGTGAGAATATGGAACATGTTTCACTTCCGTGTGTGGTAGTTTTTAGTCATATGTGTTCCGGGACTGATTTCATCAGATACCAAAGTACCACAGGTTCTGGTATGATAAAGAGAGAATAAAATTCTTAAATTTTAATTATTAAAGTAAGATCTTATCATTTCGTCCTACTCCTGTAGTAACTACAGGGGATCCATATGATGTCTCAGTGCCCCGATTTTTTCATGTCAAGTTCTAGTTCATTCTCAGTCTTTTGCTTATCGACATGCTTTTAGATTTATTGAGTACTTGTACTTCTATGGAAACAGGACAGACAATGCTATTAAAAACCACTGGAACAGTTCAGTCAAAAAGAAATTGGATTCTTACTTGGCATCAGGCTTGCTTACTCAATTGCAATCTGCACCTCATGTTGGAAATCCAAGCCAATCAATGGTTGCAACATCTTCAAGGTCGCAATGTAATGAAGATGAGAATGCTTTTCAGCGGATTGAAGGAGATGAAGTTTTAGAGTGTAGTCATGAGTCAGCTAATGCTCTCCACTTTCCATCGACTAGAGAGATAACCAGTGTTGACTTACAACCTGAAGAGGAGAATAGACCAATTGAAGAATGTAGTTTTGGGATGGATCATAGTCCAAGTCAAGCATCCTGTTCAGAGCCATATCTTGTATCAATTGACGACTCAATTGACGATGTTACTATATGCATTCCAGAAATTGCTCATCACGAGGCATGCTCTTCTGAATTCAATGACCAGTACTCACATGAACCTGGAAATTCCATAAATGAGGATCGCCACCTTAACTTACATTCCTTACCCAATATTTCATCAATGGACTTAGGGAAGGAATCCCCGCAGATGCAAAGAGATTGTACAGATCCTAGTGGAATACGTGACTTGGTAAATGTTCAATATCAGACTTCAGTGGGTTTAGCTGCTTCAACGCACATGGAAACTACATCTATGGATTCTGCTAAACCAGATCATATGTTGATATCTGATGACGAATGTTGCCGAGTCCTGTTTTCAGAGGCAGATAATGATAGACGTTTTATCCAAGGAGATTATAATAAAGGTGTTGGTACTGTTGAATTTTCTGGTCACCCTGCATTTGTTTGTCAATCATGTCGTATTCTGATTTTCGAAACTGGTGGAACCTCATCAACTCTGCCATTAACTTGTCCTCAGTGTTCTAATAATTTCAAAGGAATGCCATCCTCCCAATCTAACCATCCAGTTCATTCTGCTGAGCCTGAGAATCAGCAGTTTGTCTCCAGAGCACCTGATAACTTCACTTATGCCAATGACATATCCAGTTCTCATTGTATTGATGCTATAGATAGTGCAGTAATGCAAGTTGTTAATCAAAACTGTTGTCCAACAGATGAAAATCCAAAGCCAAATGTGCACACAGAAAAGGAGGGCAATGGAGCACTATGTTATGAACCTCCCCGTTTTCCAAGCTTGGATATTCCTTTCTTGAGCTGTGATCTTGTACAATCTGGGGGTGATATGCAGCAAGAATTTAGTCCTCTGGGTATCCGCCAGTTTATGATGTCTTCTATGAACTGTATGACTCCGTCAAGGTTGTGGGACTCGCCATCTCGCGACGATAGTCCAGAAGCATTATTGAAAAGTGCAGCTAAAACTTTTACGGGTACACCATCAATATTAAAGAAACGATGCCGAGATTTGTTATCACCACTTTCAGATAAAAGAATCGGCAAGAAACTTGAGACTGACACGTCATCCTCTTTGTCCAAAGCTTTTTCTATTTTGGAAGCAGATATACTTTCTCCATCTTCATTGCAAAAGTATAACTCTGGGGCTTCTGGTTTTGATGACGATAAAGAAAATTGCGGACAAGCTGATAAAGGTAAACAAGTAGAGGAGACAAATAAATCGGCAATTTTGGAAGAAAAGAAGTCTCAAAGAAATGCTCTTGACAGTAATTCTCCTGGTAAGGTTAAGCAGCGACATTTTGACGTTGATTCTAAAATGAAGATTGATGCTGCTGCTTCTGAGATTGTAAGTACTTGTACAGTTCATCTCCTCTTATTGTAATCTGGAGTTACTTCTCCCTATGTCCTCCTCTGTCTCATTTCTGTTAGATTACTTTTTCACTCCTTTTGTCGTGTTTATCAGGTGCAACAATCTTCTGGAGTTTTGTCTGAACATGATAGGAACGACCTTTCATTATACTCATCTGATCAAGTTGGTTTTAGAGACAGAGTTCTAGGTTCTAGTGTTAGAACTCCCAGAAACTTGAACAATAGGAGCTCGGAAACAGTTCCAAACCAGAGCATTCCTTCAAAATTATCTTCTGAGAATCCTTGCAGGTTTAGCTCTCCTTGTGTTCGTGCAAAGGAGCATGAAAATCTTACAGTTTCTGTTAATCGTGTAAAAGCTCCAGGGGAGAATTCAGGGGATCAAAGTAAAAATGATGGAGGTTTTGAAACTTATAGCATGTAATGTTCTTTAAATTTCTTGTTATTGATATCAATCGAGTAATTTCTTGTTAAGATAATAGCATTATTGCTAATTGTTTAAGCTGCCTCCACAGTTTTGTTGTCTGTGGGGCAACTGAAAATTCATTTTCTGCTTATTGTTATTTGCAAGAAGTCACACTGTTTCTGACTGTCTGCTTCTTTGATTGTAGATTTGGTGGAACACCTTTCATGAAAGGTTTTGAATCTCCTTCTGCATGGAAATCATCTCCTTGGTTCAGGAATACTTTTCTCTGTAGCCCCAATACTGAAATTAAAATTGAGGTGCTTTAGCTTATATTGGATAACTACTGTAATGATCTTTGAAATATATTTTAATTTTGACCTGCTAAAAACAGTAAACATGTTTTCAGGATTTTGGATTCTTCAAGAGCCCAGAAGGTGAAAGAAGCTACGACGCTATCGGGTTGTTAAAACAAGTCGGTGAACAAACTGCTGCTACATATGAAAATGCACAGGAGCTTTTGAAAAATGATACTCCTAAAGCAGTACCTCAAGATGCATCCGGAAACGATAATAGTCCTAGCGCGAACAATTCTAAGTTGAATTCAAATGCTTTGGTAAAGTTGAATTTAATTAATCCGTTATGCTTGCTTCCTTCGTTTTCCATGCAATATTTAATCTTGACACTGTTTTCTTTAATAAACATTAAAGTTATTTTTGTTGGTGTCCCTCACCAATATGTAACACAAGAGCATTGTAATCTCATTCGCAATTACTATGAGTATTATATGTGGTTTCCACTGTACAAAGAACATTTATGATAAACCTTACTTTTGACAATATCTTATAGCTTAATGGGATTTTATTTTCTTAGGTTGAGCGACGCGTGCTTGACTTTAGTGAATGTGGAACACCAGAAAAGGGTGATAGCAGCAAATCCTCAGATAGTCGGCTATGA

Protein sequence

>MS.gene066997.t1

MDGERIIAVPQGEGPIDSVEKVRAALHGRITGPTRRSTKGQWTPEEDETLRKAVQRFQGKNWKKIAECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDDVMIELVNKYGPKKWSTIAQHLPGRIGKQCRERWHNHLNPAINKEAWTQEEELALIRAHQIYGNKWAELTKFLPGRTDNAIKNHWNSSVKKKLDSYLASGLLTQLQSAPHVGNPSQSMVATSSRSQCNEDENAFQRIEGDEVLECSHESANALHFPSTREITSVDLQPEEENRPIEECSFGMDHSPSQASCSEPYLVSIDDSIDDVTICIPEIAHHEACSSEFNDQYSHEPGNSINEDRHLNLHSLPNISSMDLGKESPQMQRDCTDPSGIRDLVNVQYQTSVGLAASTHMETTSMDSAKPDHMLISDDECCRVLFSEADNDRRFIQGDYNKGVGTVEFSGHPAFVCQSCRILIFETGGTSSTLPLTCPQCSNNFKGMPSSQSNHPVHSAEPENQQFVSRAPDNFTYANDISSSHCIDAIDSAVMQVVNQNCCPTDENPKPNVHTEKEGNGALCYEPPRFPSLDIPFLSCDLVQSGGDMQQEFSPLGIRQFMMSSMNCMTPSRLWDSPSRDDSPEALLKSAAKTFTGTPSILKKRCRDLLSPLSDKRIGKKLETDTSSSLSKAFSILEADILSPSSLQKYNSGASGFDDDKENCGQADKGKQVEETNKSAILEEKKSQRNALDSNSPGKVKQRHFDVDSKMKIDAAASEIVQQSSGVLSEHDRNDLSLYSSDQVGFRDRVLGSSVRTPRNLNNRSSETVPNQSIPSKLSSENPCRFSSPCVRAKEHENLTVSVNRVKAPGENSGDQSKNDGGFETYSIFGGTPFMKGFESPSAWKSSPWFRNTFLCSPNTEIKIEDFGFFKSPEGERSYDAIGLLKQVGEQTAATYENAQELLKNDTPKAVPQDASGNDNSPSANNSKLNSNALVERRVLDFSECGTPEKGDSSKSSDSRL