AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene067013

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene067013.t1 MTR_1g004990 97.636 423 10 0 1 423 1 423 0.0 859
MS.gene067013.t1 MTR_3g110180 62.383 428 154 2 1 421 1 428 0.0 536
MS.gene067013.t1 MTR_3g110180 62.383 428 153 3 1 421 1 427 0.0 533
MS.gene067013.t1 MTR_6g087070 71.605 324 91 1 1 323 1 324 6.77e-177 501
MS.gene067013.t1 MTR_8g102930 59.251 427 163 5 1 421 1 422 1.21e-176 500
MS.gene067013.t1 MTR_4g126010 66.565 329 107 1 1 326 1 329 4.96e-166 474
MS.gene067013.t1 MTR_2g099670 67.398 319 104 0 1 319 1 319 8.62e-165 472
MS.gene067013.t1 MTR_2g039930 65.653 329 110 1 1 326 1 329 5.13e-164 469
MS.gene067013.t1 MTR_1g042280 65.465 333 110 1 1 333 2 329 1.33e-163 468
MS.gene067013.t1 MTR_1g075870 64.832 327 110 1 1 327 2 323 8.91e-162 458
MS.gene067013.t1 MTR_1g069720 69.831 295 89 0 1 295 1 295 9.62e-162 463
MS.gene067013.t1 MTR_1g075870 64.832 327 110 1 1 327 2 323 5.70e-161 461
MS.gene067013.t1 MTR_8g018310 65.831 319 108 1 1 319 1 318 5.88e-160 459
MS.gene067013.t1 MTR_8g018310 65.831 319 108 1 1 319 1 318 1.17e-158 454
MS.gene067013.t1 MTR_7g097160 67.785 298 96 0 1 298 1 298 1.21e-157 453
MS.gene067013.t1 MTR_1g042280 66.667 288 91 1 40 327 9 291 5.65e-144 412
MS.gene067013.t1 MTR_0492s0030 61.342 313 119 1 1 311 1 313 2.70e-141 408
MS.gene067013.t1 MTR_0543s0020 61.342 313 119 1 1 311 1 313 2.70e-141 408
MS.gene067013.t1 MTR_1g075870 66.296 270 86 1 58 327 2 266 1.13e-134 388
MS.gene067013.t1 MTR_2g099670 67.829 258 83 0 62 319 10 267 5.78e-133 389
MS.gene067013.t1 MTR_2g039930 64.919 248 84 1 82 326 1 248 1.27e-119 353
MS.gene067013.t1 MTR_7g097160 71.613 155 44 0 144 298 25 179 1.49e-78 247
MS.gene067013.t1 MTR_1g007150 38.163 283 161 7 2 273 114 393 2.33e-54 192
MS.gene067013.t1 MTR_1g116210 37.857 280 160 6 5 273 113 389 2.65e-54 191
MS.gene067013.t1 MTR_7g006030 35.789 285 164 6 5 273 31 312 3.90e-53 187
MS.gene067013.t1 MTR_3g110240 36.749 283 165 7 2 273 111 390 4.54e-52 185
MS.gene067013.t1 MTR_7g085540 35.106 282 167 5 9 277 147 425 1.23e-49 179
MS.gene067013.t1 MTR_8g014050 34.043 282 164 6 9 273 128 404 3.47e-46 169
MS.gene067013.t1 MTR_7g116400 44.444 81 37 2 82 154 3 83 1.59e-15 72.0
MS.gene067013.t1 MTR_5g022030 27.854 219 142 5 2 213 92 301 2.27e-14 75.5
MS.gene067013.t1 MTR_5g022030 27.854 219 142 5 2 213 92 301 2.96e-14 75.1
MS.gene067013.t1 MTR_5g075060 27.016 248 146 9 3 236 6 232 2.05e-13 72.0
MS.gene067013.t1 MTR_8g099095 29.717 212 131 7 9 213 66 266 2.08e-13 72.4
MS.gene067013.t1 MTR_8g079790 26.106 226 144 5 1 213 117 332 2.37e-13 72.4
MS.gene067013.t1 MTR_5g009830 28.182 220 132 6 5 213 63 267 2.38e-13 71.6
MS.gene067013.t1 MTR_3g098090 29.114 237 147 7 9 238 32 254 2.59e-13 72.0
MS.gene067013.t1 MTR_5g009830 28.182 220 132 6 5 213 63 267 3.22e-13 71.6
MS.gene067013.t1 MTR_4g132860 27.881 269 164 9 11 269 82 330 4.02e-13 70.9
MS.gene067013.t1 MTR_0028s0170 29.545 220 129 8 5 213 74 278 4.41e-13 71.2
MS.gene067013.t1 MTR_4g128820 28.326 233 144 8 7 232 8 224 4.53e-13 70.9
MS.gene067013.t1 MTR_3g466400 27.500 240 153 9 4 236 9 234 5.22e-13 70.9
MS.gene067013.t1 MTR_7g116390 25.424 236 157 5 8 237 15 237 2.58e-12 67.8
MS.gene067013.t1 MTR_1g101630 26.582 237 155 7 8 238 40 263 3.26e-12 68.6
MS.gene067013.t1 MTR_5g067150 25.439 228 151 6 7 227 7 222 3.99e-12 67.8
MS.gene067013.t1 MTR_5g067150 26.201 229 148 7 7 227 7 222 4.10e-12 67.8
MS.gene067013.t1 MTR_5g067150 26.201 229 148 7 7 227 7 222 4.85e-12 67.8
MS.gene067013.t1 MTR_7g073520 26.923 234 149 7 9 236 148 365 5.18e-12 67.8
MS.gene067013.t1 MTR_5g017890 24.252 301 195 10 8 293 371 653 6.64e-12 67.8
MS.gene067013.t1 MTR_7g118020 25.339 221 145 5 3 213 138 348 7.40e-12 67.8
MS.gene067013.t1 MTR_7g072710 26.552 290 167 14 11 278 47 312 1.05e-11 66.2
MS.gene067013.t1 MTR_8g095440 27.014 211 138 5 9 213 30 230 1.35e-11 66.2
MS.gene067013.t1 MTR_1g026190 27.234 235 150 7 9 234 78 300 2.17e-11 65.9
MS.gene067013.t1 MTR_3g099920 26.667 225 119 8 9 213 19 217 2.82e-11 65.5
MS.gene067013.t1 MTR_7g106730 25.822 213 142 5 9 215 88 290 3.08e-11 65.1
MS.gene067013.t1 MTR_4g086660 26.222 225 142 6 1 213 129 341 3.17e-11 65.5
MS.gene067013.t1 MTR_2g049790 29.279 222 128 11 6 214 20 225 3.35e-11 65.1
MS.gene067013.t1 MTR_8g095440 27.014 211 138 5 9 213 30 230 3.68e-11 65.1
MS.gene067013.t1 MTR_4g066660 29.586 169 109 4 8 167 71 238 4.04e-11 65.1
MS.gene067013.t1 MTR_5g007590 44.776 67 29 1 79 145 61 119 4.78e-11 60.5
MS.gene067013.t1 MTR_8g024100 26.897 290 179 12 1 282 8 272 6.50e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene067013.t1 AT4G28860 59.375 416 149 3 1 408 1 404 8.07e-180 508
MS.gene067013.t1 AT4G28880 57.656 418 165 4 1 413 1 411 4.73e-177 501
MS.gene067013.t1 AT4G28880 57.656 418 165 4 1 413 1 411 4.73e-177 501
MS.gene067013.t1 AT4G28880 57.656 418 165 4 1 413 1 411 4.73e-177 501
MS.gene067013.t1 AT4G28880 57.656 418 165 4 1 413 1 411 4.73e-177 501
MS.gene067013.t1 AT4G28860 63.934 366 120 2 1 366 1 354 1.07e-175 496
MS.gene067013.t1 AT4G26100 55.637 408 169 5 1 405 1 399 3.89e-166 474
MS.gene067013.t1 AT5G57015 67.702 322 102 1 1 320 1 322 8.40e-166 473
MS.gene067013.t1 AT3G23340 56.219 402 163 4 1 396 1 395 2.32e-160 459
MS.gene067013.t1 AT1G72710 66.144 319 107 1 1 319 1 318 5.78e-160 459
MS.gene067013.t1 AT5G44100 68.456 298 94 0 1 298 1 298 7.74e-159 457
MS.gene067013.t1 AT5G44100 68.456 298 94 0 1 298 1 298 7.74e-159 457
MS.gene067013.t1 AT1G03930 67.114 298 98 0 1 298 1 298 7.52e-158 454
MS.gene067013.t1 AT2G19470 54.912 397 164 3 1 397 1 382 2.13e-156 449
MS.gene067013.t1 AT4G28540 66.441 295 99 0 1 295 5 299 4.16e-155 447
MS.gene067013.t1 AT5G43320 67.450 298 97 0 1 298 1 298 5.01e-155 447
MS.gene067013.t1 AT4G14340 62.691 327 118 1 1 327 7 329 7.17e-154 443
MS.gene067013.t1 AT1G04440 66.779 298 99 0 1 298 1 298 1.50e-153 443
MS.gene067013.t1 AT4G14340 62.691 327 118 1 1 327 7 329 1.57e-153 439
MS.gene067013.t1 AT5G43320 67.450 298 97 0 1 298 1 298 2.86e-153 438
MS.gene067013.t1 AT5G43320 67.450 298 97 0 1 298 1 298 2.86e-153 438
MS.gene067013.t1 AT3G23340 52.985 402 162 5 1 396 1 381 3.30e-146 423
MS.gene067013.t1 AT4G08800 57.383 298 95 2 1 298 1 266 1.80e-123 360
MS.gene067013.t1 AT2G25760 36.786 280 162 4 9 273 107 386 5.63e-55 193
MS.gene067013.t1 AT3G13670 35.986 289 166 6 5 277 131 416 8.37e-54 191
MS.gene067013.t1 AT2G25760 36.786 280 159 5 9 273 107 383 1.59e-53 189
MS.gene067013.t1 AT3G03940 35.461 282 166 5 9 277 140 418 1.78e-50 181
MS.gene067013.t1 AT5G18190 35.106 282 167 5 9 277 130 408 2.95e-50 181
MS.gene067013.t1 AT5G18190 35.106 282 167 5 9 277 130 408 2.95e-50 181
MS.gene067013.t1 AT3G06030 29.412 221 127 7 8 213 67 273 1.67e-14 75.9
MS.gene067013.t1 AT4G36070 27.523 218 141 6 8 217 70 278 3.54e-14 74.7
MS.gene067013.t1 AT2G17890 27.700 213 138 5 8 213 107 310 3.90e-14 74.7
MS.gene067013.t1 AT4G36070 27.523 218 141 6 8 217 70 278 5.25e-14 74.3
MS.gene067013.t1 AT5G66210 27.830 212 137 5 9 213 62 264 5.45e-14 73.9
MS.gene067013.t1 AT5G66210 27.830 212 137 5 9 213 62 264 5.97e-14 73.9
MS.gene067013.t1 AT5G66210 27.830 212 137 5 9 213 62 264 6.46e-14 73.6
MS.gene067013.t1 AT5G66210 27.830 212 137 5 9 213 62 264 6.46e-14 73.6
MS.gene067013.t1 AT5G66210 27.830 212 137 5 9 213 62 264 7.62e-14 73.6
MS.gene067013.t1 AT5G66210 27.830 212 137 5 9 213 62 264 7.62e-14 73.6
MS.gene067013.t1 AT2G46700 27.354 223 138 7 3 213 137 347 1.22e-13 73.2
MS.gene067013.t1 AT5G66850 27.039 233 147 7 5 224 342 564 1.29e-13 73.2
MS.gene067013.t1 AT5G66850 27.039 233 147 7 5 224 342 564 1.41e-13 73.2
MS.gene067013.t1 AT3G49370 27.854 219 138 6 7 215 140 348 4.74e-13 71.2
MS.gene067013.t1 AT5G25110 25.726 241 158 8 3 236 37 263 6.55e-13 70.9
MS.gene067013.t1 AT3G53930 25.000 268 174 6 5 254 16 274 6.63e-13 71.2
MS.gene067013.t1 AT3G53930 25.000 268 174 6 5 254 16 274 6.63e-13 71.2
MS.gene067013.t1 AT1G62400 28.090 267 162 9 11 267 88 334 8.22e-13 70.1
MS.gene067013.t1 AT3G50530 26.009 223 145 5 1 213 140 352 1.19e-12 70.1
MS.gene067013.t1 AT5G10930 25.620 242 158 8 3 236 6 233 2.15e-12 68.9
MS.gene067013.t1 AT4G23650 30.876 217 126 8 9 215 78 280 2.17e-12 69.3
MS.gene067013.t1 AT4G14580 27.511 229 134 9 2 213 10 223 2.61e-12 68.6
MS.gene067013.t1 AT3G23000 26.068 234 152 8 3 227 19 240 4.75e-12 67.8
MS.gene067013.t1 AT3G08720 25.431 232 154 6 9 236 140 356 5.03e-12 67.8
MS.gene067013.t1 AT3G08720 25.431 232 154 6 9 236 140 356 5.03e-12 67.8
MS.gene067013.t1 AT3G08720 25.431 232 154 6 9 236 140 356 5.03e-12 67.8
MS.gene067013.t1 AT3G08720 25.431 232 154 6 9 236 140 356 5.03e-12 67.8
MS.gene067013.t1 AT1G51660 25.882 255 156 10 12 255 82 314 5.11e-12 67.4
MS.gene067013.t1 AT2G31500 28.111 217 130 7 8 213 65 266 5.45e-12 68.2
MS.gene067013.t1 AT1G01140 27.686 242 145 12 7 236 17 240 8.49e-12 67.0
MS.gene067013.t1 AT1G01140 27.686 242 145 12 7 236 17 240 1.00e-11 67.0
MS.gene067013.t1 AT1G08650 26.829 246 147 9 8 240 14 239 1.20e-11 65.5
MS.gene067013.t1 AT1G08650 26.033 242 154 7 8 240 14 239 1.42e-11 65.5
MS.gene067013.t1 AT3G08730 26.050 238 156 7 4 236 128 350 1.59e-11 66.2
MS.gene067013.t1 AT3G08730 26.050 238 156 7 4 236 128 350 1.59e-11 66.2
MS.gene067013.t1 AT5G24430 27.397 219 139 7 7 215 141 349 2.06e-11 66.2
MS.gene067013.t1 AT4G24400 25.200 250 156 8 7 249 7 232 2.11e-11 65.9
MS.gene067013.t1 AT3G01090 30.047 213 127 9 9 213 42 240 2.58e-11 65.9
MS.gene067013.t1 AT5G21326 26.506 249 139 10 7 236 11 234 2.60e-11 65.5
MS.gene067013.t1 AT3G01090 30.047 213 127 9 9 213 19 217 2.75e-11 65.9
MS.gene067013.t1 AT3G01090 30.047 213 127 9 9 213 19 217 2.75e-11 65.9
MS.gene067013.t1 AT1G35670 27.586 232 149 7 9 234 26 244 3.67e-11 65.5
MS.gene067013.t1 AT4G24400 25.200 250 156 8 7 249 7 232 3.70e-11 65.1
MS.gene067013.t1 AT1G67580 27.848 237 143 8 14 240 411 629 4.21e-11 65.5
MS.gene067013.t1 AT1G67580 27.848 237 143 8 14 240 411 629 4.21e-11 65.5
MS.gene067013.t1 AT1G01140 27.686 242 147 12 7 236 17 242 5.25e-11 64.7
MS.gene067013.t1 AT4G32830 26.160 237 145 9 9 236 31 246 5.75e-11 63.5
MS.gene067013.t1 AT2G38910 27.488 211 137 6 9 213 134 334 7.34e-11 64.7

Find 97 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTCTAGTTCTTGAACTTA+TGG 0.162372 1.3:-12488352 MS.gene067013:CDS
GAGGTTTCCACAGTCGTTTC+TGG 0.189583 1.3:+12485466 None:intergenic
TCCACAGTCGTTTCTGGTTT+TGG 0.193952 1.3:+12485472 None:intergenic
GTACCAAACCATTTCATTCT+TGG 0.227657 1.3:+12488390 None:intergenic
CATTAGACTAACCTTCTTAA+TGG 0.235709 1.3:+12489186 None:intergenic
TATAGAGTTGGTAGGAAAAT+TGG 0.237607 1.3:-12489363 MS.gene067013:CDS
CAGGTTTGTATGATTGATTT+TGG 0.244306 1.3:-12487587 MS.gene067013:CDS
TTACTCCCTAACACGTCATT+AGG 0.254485 1.3:+12485439 None:intergenic
CAAACCGGATAACTTTCTTA+TGG 0.257400 1.3:-12487725 MS.gene067013:CDS
TCATTTGGTGAAATTTATAT+TGG 0.266055 1.3:-12489333 MS.gene067013:intron
AAGTTATATAATATTCTTAA+AGG 0.281266 1.3:-12488534 MS.gene067013:CDS
GTTCTAGTTCTTGAACTTAT+GGG 0.300638 1.3:-12488351 MS.gene067013:CDS
TTCGATCAACGACCAGATTA+TGG 0.303765 1.3:-12486539 MS.gene067013:CDS
GCAAAGCCGCAGAGATGATT+TGG 0.307778 1.3:-12486992 MS.gene067013:CDS
AAACCGGATAACTTTCTTAT+GGG 0.337171 1.3:-12487724 MS.gene067013:CDS
CGTGAATTGTTCACTTCTAA+AGG 0.340115 1.3:-12486497 MS.gene067013:intron
GTCCCCTACCGTCTAATTGA+TGG 0.360338 1.3:+12485369 None:intergenic
TCAAACCCTAATGACGTGTT+AGG 0.365272 1.3:-12485445 MS.gene067013:CDS
GATAACTTTCTTATGGGTCT+TGG 0.366159 1.3:-12487718 MS.gene067013:CDS
GTTACAAGCATATCCCTTAC+AGG 0.376749 1.3:-12487535 MS.gene067013:intron
TCAGGAGATTCAACAGATAA+AGG 0.377164 1.3:-12486273 MS.gene067013:CDS
CGCTTCAAATATCCATAATC+TGG 0.378050 1.3:+12486527 None:intergenic
TAGAAAATCTTATACCTGTA+AGG 0.385287 1.3:+12487521 None:intergenic
TTAGGCATGACAGTGGAAAT+AGG 0.394364 1.3:+12485505 None:intergenic
TTGGACTTTCAAAAGGATAC+AGG 0.395538 1.3:-12487568 MS.gene067013:CDS
AAAATTGGTAGTGGATCATT+TGG 0.395776 1.3:-12489348 MS.gene067013:CDS
AGACTGGTAGGCACGGCAAC+TGG 0.401062 1.3:+12485937 None:intergenic
TACTCCCTAACACGTCATTA+GGG 0.401326 1.3:+12485440 None:intergenic
CACGTGTTTGTATGAAGCTC+AGG 0.404014 1.3:-12485715 MS.gene067013:CDS
AGCAATACTCACAAAGGAAT+TGG 0.405316 1.3:-12487114 MS.gene067013:intron
ATTCCAAGAATGAAATGGTT+TGG 0.419642 1.3:-12488393 MS.gene067013:CDS
ATAACTTTCTTATGGGTCTT+GGG 0.425665 1.3:-12487717 MS.gene067013:CDS
TTTGATGTTGGCCGATCAAA+TGG 0.434639 1.3:-12488271 MS.gene067013:intron
CATGATACGCATACCTCAAC+GGG 0.445042 1.3:+12486724 None:intergenic
GTGGTATTCCAAGAATGAAA+TGG 0.445472 1.3:-12488398 MS.gene067013:CDS
ATGCTGACTATTTATATGAC+TGG 0.453335 1.3:-12486310 MS.gene067013:CDS
AAGTGAACAATTCACGAAAC+AGG 0.453549 1.3:+12486504 None:intergenic
GATAGAGTATTTACATTCCA+AGG 0.456851 1.3:-12487767 MS.gene067013:CDS
TAACACGTCATTAGGGTTTG+AGG 0.458544 1.3:+12485447 None:intergenic
TCTTGGGAAGAAAGCAAATC+AGG 0.466032 1.3:-12487701 MS.gene067013:intron
GTTGGAGGAAAGTATAGAGT+TGG 0.472527 1.3:-12489375 MS.gene067013:CDS
GATGGAACTCGGCGTATTGA+AGG 0.476339 1.3:+12485391 None:intergenic
CAGTCTTGAACCAGGGGATG+TGG 0.476450 1.3:-12485920 MS.gene067013:CDS
ATCTCTGTGTAGTAATCCCT+TGG 0.476514 1.3:+12487750 None:intergenic
TGAGCTTGTGGCCATTAAGA+AGG 0.478601 1.3:-12489197 MS.gene067013:intron
AGAGATGATTTGGAGTCTCT+TGG 0.485541 1.3:-12486982 MS.gene067013:CDS
CACATCCCCTGGTTCAAGAC+TGG 0.508245 1.3:+12485921 None:intergenic
ACAACCACAGCTACTATATG+AGG 0.509476 1.3:-12488559 MS.gene067013:CDS
ATCAATGATTACCATTTGAT+CGG 0.517254 1.3:+12488260 None:intergenic
TTGATGGAAAAGGTTGTTGG+AGG 0.519460 1.3:-12489390 MS.gene067013:CDS
ATGTGGTGCTTCTGATGACT+TGG 0.519856 1.3:-12485416 MS.gene067013:CDS
TGTTGTGACTTCTGAGCTTG+TGG 0.519886 1.3:-12489209 MS.gene067013:CDS
AGAAAATCTTATACCTGTAA+GGG 0.525824 1.3:+12487522 None:intergenic
ATGAAATGGTTTGGTACTGA+TGG 0.526555 1.3:-12488384 MS.gene067013:CDS
GGGATATGCTTGTAACTGAT+AGG 0.529353 1.3:+12487542 None:intergenic
GTGCCTACCAGTCTTGAACC+AGG 0.530109 1.3:-12485928 MS.gene067013:CDS
GTATGCTCATCCACATCCCC+TGG 0.539165 1.3:+12485910 None:intergenic
GGGGATGTGGATGAGCATAC+AGG 0.543688 1.3:-12485907 MS.gene067013:intron
AGACCCATAAGAAAGTTATC+CGG 0.547262 1.3:+12487721 None:intergenic
CTTGCAGACCTTGCCAAGGA+AGG 0.550925 1.3:+12486800 None:intergenic
TATTTCCACTGTCATGCCTA+AGG 0.553869 1.3:-12485503 MS.gene067013:CDS
GTTGGTAGGAAAATTGGTAG+TGG 0.554470 1.3:-12489357 MS.gene067013:CDS
TTATATAATATTCTTAAAGG+AGG 0.558963 1.3:-12488531 MS.gene067013:CDS
ACCTGCTTTACTACTGTAGT+GGG 0.563020 1.3:-12488314 MS.gene067013:CDS
CAAACCCTAATGACGTGTTA+GGG 0.568940 1.3:-12485444 MS.gene067013:CDS
ATAGAGTATTTACATTCCAA+GGG 0.572950 1.3:-12487766 MS.gene067013:CDS
CATACAAACACGTGGACGGT+CGG 0.573243 1.3:+12485724 None:intergenic
TGCCTACCAGTCTTGAACCA+GGG 0.578146 1.3:-12485927 MS.gene067013:CDS
GAGGAAAGTATAGAGTTGGT+AGG 0.580361 1.3:-12489371 MS.gene067013:CDS
TTCTTTGATGACAGCTTACG+AGG 0.582045 1.3:-12487789 MS.gene067013:intron
TTTGCCTCATATAGTAGCTG+TGG 0.584195 1.3:+12488555 None:intergenic
TCCCACTACAGTAGTAAAGC+AGG 0.584326 1.3:+12488313 None:intergenic
TGGACTTTCAAAAGGATACA+GGG 0.587624 1.3:-12487567 MS.gene067013:CDS
GACCTGCTTTACTACTGTAG+TGG 0.588567 1.3:-12488315 MS.gene067013:CDS
ACTACACAGAGATATCAAAC+CGG 0.594392 1.3:-12487740 MS.gene067013:CDS
TAAAGCAGGTCATCGAGACT+CGG 0.601579 1.3:+12488327 None:intergenic
GCATGATACGCATACCTCAA+CGG 0.615775 1.3:+12486723 None:intergenic
TCTAATTGATGGATGGAACT+CGG 0.618953 1.3:+12485380 None:intergenic
GCCTACCAGTCTTGAACCAG+GGG 0.620423 1.3:-12485926 MS.gene067013:CDS
CCTACCGTCTAATTGATGGA+TGG 0.625189 1.3:+12485373 None:intergenic
GCTTCATACAAACACGTGGA+CGG 0.629471 1.3:+12485720 None:intergenic
AAGTAAGAAGCAAACTCCAC+GGG 0.633022 1.3:+12486584 None:intergenic
AAAGTAAGAAGCAAACTCCA+CGG 0.637426 1.3:+12486583 None:intergenic
GCAAGTAGCAATACTCACAA+AGG 0.640002 1.3:-12487120 MS.gene067013:CDS
TGGTTCAAGACTGGTAGGCA+CGG 0.645835 1.3:+12485930 None:intergenic
GCAGCTTGCAGACCTTGCCA+AGG 0.651297 1.3:+12486796 None:intergenic
ACGTGTTTGTATGAAGCTCA+GGG 0.653358 1.3:-12485714 MS.gene067013:CDS
TGGTCGTTGATCGAATGTCA+AGG 0.653518 1.3:+12486547 None:intergenic
TCCCCTGGTTCAAGACTGGT+AGG 0.656075 1.3:+12485925 None:intergenic
CTGAGCTTCATACAAACACG+TGG 0.660997 1.3:+12485716 None:intergenic
ACTTTGCAAGTCATGTCCCG+TGG 0.667670 1.3:-12486600 MS.gene067013:CDS
ATCTTCCTTAGGCATGACAG+TGG 0.673478 1.3:+12485498 None:intergenic
AAAGTTAAACACTCCCGTTG+AGG 0.684502 1.3:-12486737 MS.gene067013:intron
TCCAAAACCAGAAACGACTG+TGG 0.684719 1.3:-12485473 MS.gene067013:CDS
GTTGATCGAATGTCAAGGAG+CGG 0.693721 1.3:+12486552 None:intergenic
GAGACTCCAAATCATCTCTG+CGG 0.717836 1.3:+12486986 None:intergenic
GACGTGTTAGGGAGTAAATG+TGG 0.739037 1.3:-12485433 MS.gene067013:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAAATAAAGAAAAAAAAT+AGG + chr1.3:12485650-12485669 None:intergenic 10.0%
!! AAGTTATATAATATTCTTAA+AGG - chr1.3:12486234-12486253 MS.gene067013:intron 10.0%
!!! GGAATTTTTTTTTTTTTTTT+CGG + chr1.3:12485867-12485886 None:intergenic 10.0%
!! AAATGATGTAATCAAATTTA+AGG + chr1.3:12485974-12485993 None:intergenic 15.0%
!! ATAAAAATTTAACCATGAAA+AGG + chr1.3:12488606-12488625 None:intergenic 15.0%
!! ATAAATCATACGTTAAAAAT+TGG + chr1.3:12487144-12487163 None:intergenic 15.0%
!! ATATAGTTAAATTCAAACTT+TGG - chr1.3:12488576-12488595 MS.gene067013:CDS 15.0%
!! ATCACTATAATAAATTAGAA+AGG + chr1.3:12486340-12486359 None:intergenic 15.0%
!! TAAAAATTTAACCATGAAAA+GGG + chr1.3:12488605-12488624 None:intergenic 15.0%
!! TTATATAATATTCTTAAAGG+AGG - chr1.3:12486237-12486256 MS.gene067013:intron 15.0%
!! TTTCTAATTTATTATAGTGA+TGG - chr1.3:12486339-12486358 MS.gene067013:intron 15.0%
!!! AAGAAAAAAAAAGTACTAAT+TGG + chr1.3:12488704-12488723 None:intergenic 15.0%
!!! ATTACATCATTTTTATCTTT+TGG - chr1.3:12485982-12486001 MS.gene067013:intron 15.0%
!!! TTACATCATTTTTATCTTTT+GGG - chr1.3:12485983-12486002 MS.gene067013:intron 15.0%
!!! TTTTTACTTATGTTTAATAC+CGG + chr1.3:12488093-12488112 None:intergenic 15.0%
!! ACATTTCTACAAATGAAAAT+AGG + chr1.3:12488729-12488748 None:intergenic 20.0%
!! AGACAAATTTAAAAACAGAA+AGG + chr1.3:12486563-12486582 None:intergenic 20.0%
!! ATGAAATATGTTACAATAAC+AGG - chr1.3:12487162-12487181 MS.gene067013:intron 20.0%
!! ATTACAAATTTCTTGTTCTT+AGG - chr1.3:12488144-12488163 MS.gene067013:intron 20.0%
!! GTAGAAATGTAAAATGTATA+CGG - chr1.3:12488739-12488758 MS.gene067013:intron 20.0%
!! TCAAAATAAAAATTGAAGCT+TGG + chr1.3:12488553-12488572 None:intergenic 20.0%
!! TTGGAATTAAAATGTTTAAG+AGG + chr1.3:12488685-12488704 None:intergenic 20.0%
!! TTGTTGTAATAATTGTGATT+AGG - chr1.3:12485665-12485684 MS.gene067013:intron 20.0%
!!! GTTAATTTATGATCATTTTC+AGG - chr1.3:12485530-12485549 MS.gene067013:intron 20.0%
!!! TAGACATATTCTTGTTTTAT+AGG - chr1.3:12486170-12486189 MS.gene067013:intron 20.0%
!!! TATTATAGTGATGGAATTTA+AGG - chr1.3:12486348-12486367 MS.gene067013:intron 20.0%
!!! TCATTTGGTGAAATTTATAT+TGG - chr1.3:12485435-12485454 MS.gene067013:CDS 20.0%
!!! TGATTGTTAATTTACTCTTT+TGG - chr1.3:12486103-12486122 MS.gene067013:intron 20.0%
!!! TTTTTCATATTTTTGCATTC+TGG + chr1.3:12488000-12488019 None:intergenic 20.0%
! AAAGAAATAAAACAGGCTTA+GGG + chr1.3:12486965-12486984 None:intergenic 25.0%
! AACAAAGGAATAATATTGTG+AGG + chr1.3:12486309-12486328 None:intergenic 25.0%
! AATAAGCTAAACACAACTAA+TGG - chr1.3:12486871-12486890 MS.gene067013:intron 25.0%
! ACAAAGGAATAATATTGTGA+GGG + chr1.3:12486308-12486327 None:intergenic 25.0%
! ACTATAGAGGAATTAAAACA+TGG + chr1.3:12487120-12487139 None:intergenic 25.0%
! AGAAAATCTTATACCTGTAA+GGG + chr1.3:12487249-12487268 None:intergenic 25.0%
! ATACCTAAAGACAATAAAGA+AGG + chr1.3:12487701-12487720 None:intergenic 25.0%
! ATAGATAGCTTAATTCAAAG+TGG + chr1.3:12487548-12487567 None:intergenic 25.0%
! ATCAATGATTACCATTTGAT+CGG + chr1.3:12486511-12486530 None:intergenic 25.0%
! ATGGTAAAAGTAGAATCAAT+AGG + chr1.3:12487853-12487872 None:intergenic 25.0%
! CTCAAATAAGTAAATCAAAC+AGG - chr1.3:12486939-12486958 MS.gene067013:intron 25.0%
! GTTAAAAATTGGAACTATAG+AGG + chr1.3:12487133-12487152 None:intergenic 25.0%
! TAGAAAATCTTATACCTGTA+AGG + chr1.3:12487250-12487269 None:intergenic 25.0%
! TATGAATTACAAATACTCCT+GGG - chr1.3:12485752-12485771 MS.gene067013:CDS 25.0%
! TCACTTCCTAAATTTATGTT+TGG - chr1.3:12488426-12488445 MS.gene067013:intron 25.0%
! TGTCATCAAAGAAATAAAAC+AGG + chr1.3:12486972-12486991 None:intergenic 25.0%
! TTTCCTTCTTTATTGTCTTT+AGG - chr1.3:12487695-12487714 MS.gene067013:intron 25.0%
!! ATAGAGTATTTACATTCCAA+GGG - chr1.3:12487002-12487021 MS.gene067013:intron 25.0%
!! CAATCATTGTATTCTGAAAA+AGG + chr1.3:12488989-12489008 None:intergenic 25.0%
!! TTGAGCACATTAGTTTAAAA+TGG - chr1.3:12486672-12486691 MS.gene067013:intron 25.0%
!!! ATTGATTTTGGACTTTCAAA+AGG - chr1.3:12487193-12487212 MS.gene067013:intron 25.0%
!!! GAAATTGTTGCTTTGATTTT+TGG - chr1.3:12485607-12485626 MS.gene067013:intron 25.0%
!!! GTTCTTTTGTACTTTTTAAG+AGG - chr1.3:12487813-12487832 MS.gene067013:intron 25.0%
!!! TTTTGTACTTTTTAAGAGGA+AGG - chr1.3:12487817-12487836 MS.gene067013:intron 25.0%
AAACCGGATAACTTTCTTAT+GGG - chr1.3:12487044-12487063 MS.gene067013:intron 30.0%
AAACGTAAGACTTGACTATT+TGG - chr1.3:12487923-12487942 MS.gene067013:intron 30.0%
AAAGGAAAAGATGCATTCAA+CGG + chr1.3:12486545-12486564 None:intergenic 30.0%
ACTAAGATACACCTATTCTT+AGG + chr1.3:12485787-12485806 None:intergenic 30.0%
AGAAAGGACTAAGAAAACAA+AGG + chr1.3:12486324-12486343 None:intergenic 30.0%
AGAGAGAACAAAAACTTAAC+AGG - chr1.3:12487612-12487631 MS.gene067013:intron 30.0%
AGCTTAATTCAAAGTGGTAA+GGG + chr1.3:12487542-12487561 None:intergenic 30.0%
ATAACTTTCTTATGGGTCTT+GGG - chr1.3:12487051-12487070 MS.gene067013:intron 30.0%
ATCCTGCCAAACATAAATTT+AGG + chr1.3:12488435-12488454 None:intergenic 30.0%
ATCGTGAGTATCAAACAATT+TGG + chr1.3:12488381-12488400 None:intergenic 30.0%
ATTCCAAGAATGAAATGGTT+TGG - chr1.3:12486375-12486394 MS.gene067013:intron 30.0%
ATTTCTCGTTGGAAATTTGT+AGG - chr1.3:12488806-12488825 MS.gene067013:intron 30.0%
CAAAGAAATAAAACAGGCTT+AGG + chr1.3:12486966-12486985 None:intergenic 30.0%
CATTAGACTAACCTTCTTAA+TGG + chr1.3:12485585-12485604 None:intergenic 30.0%
CTATGAATTACAAATACTCC+TGG - chr1.3:12485751-12485770 MS.gene067013:CDS 30.0%
GCAAGTTTGATGTAAAAAGA+AGG + chr1.3:12486642-12486661 None:intergenic 30.0%
TACTTATGTTTAATACCGGA+GGG + chr1.3:12488089-12488108 None:intergenic 30.0%
TAGCTTAATTCAAAGTGGTA+AGG + chr1.3:12487543-12487562 None:intergenic 30.0%
TATAAACCATCACATAGTTG+AGG + chr1.3:12486149-12486168 None:intergenic 30.0%
TCCAAGGTATATAAAAGCAA+CGG + chr1.3:12485889-12485908 None:intergenic 30.0%
TGAAGTAACTCACTTTGAAT+TGG - chr1.3:12489207-12489226 MS.gene067013:CDS 30.0%
TGTTTGATCTCTTCTTGATA+TGG - chr1.3:12487287-12487306 MS.gene067013:intron 30.0%
TTACATCAAACTTGCATCAA+CGG - chr1.3:12486647-12486666 MS.gene067013:intron 30.0%
TTACTTATGTTTAATACCGG+AGG + chr1.3:12488090-12488109 None:intergenic 30.0%
TTCCTAAATTTATGTTTGGC+AGG - chr1.3:12488430-12488449 MS.gene067013:intron 30.0%
TTTGCTTGATTCATTCTTAG+TGG - chr1.3:12487511-12487530 MS.gene067013:intron 30.0%
! ACTATTCTCACTCACAATTT+TGG - chr1.3:12487738-12487757 MS.gene067013:CDS 30.0%
! AGCACATTAGTTTAAAATGG+AGG - chr1.3:12486675-12486694 MS.gene067013:intron 30.0%
! ATGCTGACTATTTATATGAC+TGG - chr1.3:12488458-12488477 MS.gene067013:intron 30.0%
! CAATATTTTCCGTATTGTGA+AGG - chr1.3:12488928-12488947 MS.gene067013:intron 30.0%
! GATAGAGTATTTACATTCCA+AGG - chr1.3:12487001-12487020 MS.gene067013:intron 30.0%
! GCACATTAGTTTAAAATGGA+GGG - chr1.3:12486676-12486695 MS.gene067013:intron 30.0%
! TATAGTGATGGAATTTAAGG+TGG - chr1.3:12486351-12486370 MS.gene067013:intron 30.0%
! TCATGTTTTCTGTATGCTAT+TGG - chr1.3:12486594-12486613 MS.gene067013:CDS 30.0%
! TGACAGAAAAGCTGTTATTT+AGG + chr1.3:12487360-12487379 None:intergenic 30.0%
! TGTTAAGTTTTTGTTCTCTC+TGG + chr1.3:12487613-12487632 None:intergenic 30.0%
! TGTTCACTTCTAAAGGTAAT+TGG - chr1.3:12488278-12488297 MS.gene067013:CDS 30.0%
!! AAAATTGGTAGTGGATCATT+TGG - chr1.3:12485420-12485439 MS.gene067013:CDS 30.0%
!! CAGGTTTGTATGATTGATTT+TGG - chr1.3:12487181-12487200 MS.gene067013:intron 30.0%
!! CATTAAGAAGGTTAGTCTAA+TGG - chr1.3:12485583-12485602 MS.gene067013:intron 30.0%
!! GATTTTGTTTGATTTCTCGT+TGG - chr1.3:12488795-12488814 MS.gene067013:intron 30.0%
!! GTTCTAGTTCTTGAACTTAT+GGG - chr1.3:12486417-12486436 MS.gene067013:intron 30.0%
!! TATAGAGTTGGTAGGAAAAT+TGG - chr1.3:12485405-12485424 MS.gene067013:CDS 30.0%
!! TGTTCTAGTTCTTGAACTTA+TGG - chr1.3:12486416-12486435 MS.gene067013:intron 30.0%
!! TTCATATTTTTGCATTCTGG+TGG + chr1.3:12487997-12488016 None:intergenic 30.0%
!! TTTATCTTTTGGGTAGTACA+TGG - chr1.3:12485993-12486012 MS.gene067013:intron 30.0%
!!! CTGGACGATTTTAAAATATC+AGG - chr1.3:12488477-12488496 MS.gene067013:intron 30.0%
!!! TCGGTATAGATTTTTGGTTT+TGG + chr1.3:12489028-12489047 None:intergenic 30.0%
AAAAGTCCTCAACTATGTGA+TGG - chr1.3:12486140-12486159 MS.gene067013:intron 35.0%
AAAGTAAGAAGCAAACTCCA+CGG + chr1.3:12488188-12488207 None:intergenic 35.0%
AAGCAACATCTTATGATGCA+TGG + chr1.3:12487872-12487891 None:intergenic 35.0%
AAGTGAACAATTCACGAAAC+AGG + chr1.3:12488267-12488286 None:intergenic 35.0%
ACACATTCTAGTCACAGTTA+CGG - chr1.3:12485918-12485937 MS.gene067013:CDS 35.0%
ACTACACAGAGATATCAAAC+CGG - chr1.3:12487028-12487047 MS.gene067013:intron 35.0%
AGACCCATAAGAAAGTTATC+CGG + chr1.3:12487050-12487069 None:intergenic 35.0%
AGCAATACTCACAAAGGAAT+TGG - chr1.3:12487654-12487673 MS.gene067013:intron 35.0%
AGTCACAGTTACGGTAATAA+TGG - chr1.3:12485927-12485946 MS.gene067013:CDS 35.0%
ATGGATGAAGCTTAAAGACT+AGG - chr1.3:12486016-12486035 MS.gene067013:intron 35.0%
CAAACCGGATAACTTTCTTA+TGG - chr1.3:12487043-12487062 MS.gene067013:intron 35.0%
CAAACTGGAAGGTCTTAATA+CGG - chr1.3:12488302-12488321 MS.gene067013:CDS 35.0%
CATGTCACAACGAAGAAAAA+AGG + chr1.3:12488642-12488661 None:intergenic 35.0%
CCAAGGTATATAAAAGCAAC+GGG + chr1.3:12485888-12485907 None:intergenic 35.0%
CGCTTCAAATATCCATAATC+TGG + chr1.3:12488244-12488263 None:intergenic 35.0%
CGTGAATTGTTCACTTCTAA+AGG - chr1.3:12488271-12488290 MS.gene067013:intron 35.0%
CTTTAGGTATGATGTAACCA+CGG - chr1.3:12487711-12487730 MS.gene067013:CDS 35.0%
GATAACTTTCTTATGGGTCT+TGG - chr1.3:12487050-12487069 MS.gene067013:intron 35.0%
GTACCAAACCATTTCATTCT+TGG + chr1.3:12486381-12486400 None:intergenic 35.0%
GTGGTATTCCAAGAATGAAA+TGG - chr1.3:12486370-12486389 MS.gene067013:intron 35.0%
TAAAGCCATTACAACATGCT+CGG + chr1.3:12488963-12488982 None:intergenic 35.0%
TCAGGAGATTCAACAGATAA+AGG - chr1.3:12488495-12488514 MS.gene067013:intron 35.0%
TGGACTTTCAAAAGGATACA+GGG - chr1.3:12487201-12487220 MS.gene067013:intron 35.0%
TTACAAATACTCCTGGGATT+AGG - chr1.3:12485758-12485777 MS.gene067013:CDS 35.0%
TTGGACTTTCAAAAGGATAC+AGG - chr1.3:12487200-12487219 MS.gene067013:intron 35.0%
! TGGGAAGTTTTCGCTAAAAT+CGG - chr1.3:12486473-12486492 MS.gene067013:intron 35.0%
!! ATGAAATGGTTTGGTACTGA+TGG - chr1.3:12486384-12486403 MS.gene067013:intron 35.0%
!! GCTAAAATCGGTTTTGATGT+TGG - chr1.3:12486485-12486504 MS.gene067013:intron 35.0%
!! GGTAATCATTGATTCGTCTA+TGG - chr1.3:12486518-12486537 MS.gene067013:CDS 35.0%
!! TTTTGCATTTTAGCCTTCCT+TGG - chr1.3:12487955-12487974 MS.gene067013:intron 35.0%
AAAGCCATTACAACATGCTC+GGG + chr1.3:12488962-12488981 None:intergenic 40.0%
AAAGTTAAACACTCCCGTTG+AGG - chr1.3:12488031-12488050 MS.gene067013:intron 40.0%
AAGCTATCTGAGAGAGCTTA+TGG - chr1.3:12486847-12486866 MS.gene067013:intron 40.0%
AAGTAAGAAGCAAACTCCAC+GGG + chr1.3:12488187-12488206 None:intergenic 40.0%
AATAACTTCAGCATGCAGAG+AGG + chr1.3:12489132-12489151 None:intergenic 40.0%
ACAACCACAGCTACTATATG+AGG - chr1.3:12486209-12486228 MS.gene067013:intron 40.0%
ACCTGCTTTACTACTGTAGT+GGG - chr1.3:12486454-12486473 MS.gene067013:intron 40.0%
ACGTGTTTGTATGAAGCTCA+GGG - chr1.3:12489054-12489073 MS.gene067013:intron 40.0%
ATCTCTGTGTAGTAATCCCT+TGG + chr1.3:12487021-12487040 None:intergenic 40.0%
CAAACCCTAATGACGTGTTA+GGG - chr1.3:12489324-12489343 MS.gene067013:intron 40.0%
CGTATTAAGACCTTCCAGTT+TGG + chr1.3:12488304-12488323 None:intergenic 40.0%
CTAAAGGTAATTGGCCAAAC+TGG - chr1.3:12488287-12488306 MS.gene067013:CDS 40.0%
CTCTCTGGATGAGTTTATCA+AGG + chr1.3:12487598-12487617 None:intergenic 40.0%
GAGTGCATTCCTTCACAATA+CGG + chr1.3:12488940-12488959 None:intergenic 40.0%
GCAAGTAGCAATACTCACAA+AGG - chr1.3:12487648-12487667 MS.gene067013:intron 40.0%
GGATTAGGCATCCTAAGAAT+AGG - chr1.3:12485773-12485792 MS.gene067013:CDS 40.0%
GGGATATGCTTGTAACTGAT+AGG + chr1.3:12487229-12487248 None:intergenic 40.0%
GTTACAAGCATATCCCTTAC+AGG - chr1.3:12487233-12487252 MS.gene067013:intron 40.0%
TAACACGTCATTAGGGTTTG+AGG + chr1.3:12489324-12489343 None:intergenic 40.0%
TACTCCCTAACACGTCATTA+GGG + chr1.3:12489331-12489350 None:intergenic 40.0%
TATTTCCACTGTCATGCCTA+AGG - chr1.3:12489265-12489284 MS.gene067013:intron 40.0%
TCAAACCCTAATGACGTGTT+AGG - chr1.3:12489323-12489342 MS.gene067013:intron 40.0%
TCTTGGGAAGAAAGCAAATC+AGG - chr1.3:12487067-12487086 MS.gene067013:intron 40.0%
TTACTCCCTAACACGTCATT+AGG + chr1.3:12489332-12489351 None:intergenic 40.0%
TTAGGCATGACAGTGGAAAT+AGG + chr1.3:12489266-12489285 None:intergenic 40.0%
TTCGATCAACGACCAGATTA+TGG - chr1.3:12488229-12488248 MS.gene067013:intron 40.0%
TTTGATGTTGGCCGATCAAA+TGG - chr1.3:12486497-12486516 MS.gene067013:intron 40.0%
TTTGCCTCATATAGTAGCTG+TGG + chr1.3:12486216-12486235 None:intergenic 40.0%
! AACTTTGGTCACCCTTTTCA+TGG - chr1.3:12488591-12488610 MS.gene067013:intron 40.0%
! AGAGATGATTTGGAGTCTCT+TGG - chr1.3:12487786-12487805 MS.gene067013:intron 40.0%
! GAGGAAAGTATAGAGTTGGT+AGG - chr1.3:12485397-12485416 MS.gene067013:CDS 40.0%
! GGTCGAGGATTTTCAATTTC+AGG - chr1.3:12488323-12488342 MS.gene067013:CDS 40.0%
! GTTGGAGGAAAGTATAGAGT+TGG - chr1.3:12485393-12485412 MS.gene067013:CDS 40.0%
! GTTGGTAGGAAAATTGGTAG+TGG - chr1.3:12485411-12485430 MS.gene067013:CDS 40.0%
! TTCTTTGATGACAGCTTACG+AGG - chr1.3:12486979-12486998 MS.gene067013:CDS 40.0%
!! AATGTGTTCGAGAGTATCCA+AGG + chr1.3:12485905-12485924 None:intergenic 40.0%
!! TCTTTTGGGTAGTACATGGA+TGG - chr1.3:12485997-12486016 MS.gene067013:intron 40.0%
!!! CCCGTTGCTTTTATATACCT+TGG - chr1.3:12485885-12485904 MS.gene067013:intron 40.0%
!!! GGTTTTGGAACATCTTCCTT+AGG + chr1.3:12489284-12489303 None:intergenic 40.0%
AGGTAATTGGCCAAACTGGA+AGG - chr1.3:12488291-12488310 MS.gene067013:CDS 45.0%
ATCTTCCTTAGGCATGACAG+TGG + chr1.3:12489273-12489292 None:intergenic 45.0%
ATGTGGTGCTTCTGATGACT+TGG - chr1.3:12489352-12489371 MS.gene067013:CDS 45.0%
CACGTGTTTGTATGAAGCTC+AGG - chr1.3:12489053-12489072 MS.gene067013:intron 45.0%
CATGATACGCATACCTCAAC+GGG + chr1.3:12488047-12488066 None:intergenic 45.0%
CTGAGCTTCATACAAACACG+TGG + chr1.3:12489055-12489074 None:intergenic 45.0%
GACCTGCTTTACTACTGTAG+TGG - chr1.3:12486453-12486472 MS.gene067013:intron 45.0%
GACGTGTTAGGGAGTAAATG+TGG - chr1.3:12489335-12489354 MS.gene067013:CDS 45.0%
GAGACTCCAAATCATCTCTG+CGG + chr1.3:12487785-12487804 None:intergenic 45.0%
GAGTGAGAATAGTTACTCCG+TGG + chr1.3:12487731-12487750 None:intergenic 45.0%
GCATGATACGCATACCTCAA+CGG + chr1.3:12488048-12488067 None:intergenic 45.0%
GCTTCATACAAACACGTGGA+CGG + chr1.3:12489051-12489070 None:intergenic 45.0%
GTTGATCGAATGTCAAGGAG+CGG + chr1.3:12488219-12488238 None:intergenic 45.0%
GTTGTCAGACATGTGTTGCA+CGG + chr1.3:12485831-12485850 None:intergenic 45.0%
TAAAGCAGGTCATCGAGACT+CGG + chr1.3:12486444-12486463 None:intergenic 45.0%
TAATACCGGAGGGAATACGT+AGG + chr1.3:12488079-12488098 None:intergenic 45.0%
TCCAAAACCAGAAACGACTG+TGG - chr1.3:12489295-12489314 MS.gene067013:intron 45.0%
TCCCACTACAGTAGTAAAGC+AGG + chr1.3:12486458-12486477 None:intergenic 45.0%
TGAGCTTGTGGCCATTAAGA+AGG - chr1.3:12485571-12485590 MS.gene067013:intron 45.0%
TGGTCGTTGATCGAATGTCA+AGG + chr1.3:12488224-12488243 None:intergenic 45.0%
TGTTGTGACTTCTGAGCTTG+TGG - chr1.3:12485559-12485578 MS.gene067013:intron 45.0%
TTCTTAGGATGCCTAATCCC+AGG + chr1.3:12485772-12485791 None:intergenic 45.0%
! GGACGGTCGGTATAGATTTT+TGG + chr1.3:12489034-12489053 None:intergenic 45.0%
!! CATTTTAGCCTTCCTTGGCA+AGG - chr1.3:12487960-12487979 MS.gene067013:intron 45.0%
!!! TCCACAGTCGTTTCTGGTTT+TGG + chr1.3:12489299-12489318 None:intergenic 45.0%
ACTTTGCAAGTCATGTCCCG+TGG - chr1.3:12488168-12488187 MS.gene067013:intron 50.0%
CACTCCCGAGCATGTTGTAA+TGG - chr1.3:12488955-12488974 MS.gene067013:intron 50.0%
CATACAAACACGTGGACGGT+CGG + chr1.3:12489047-12489066 None:intergenic 50.0%
CCATTCCTACGTATTCCCTC+CGG - chr1.3:12488071-12488090 MS.gene067013:intron 50.0%
CGGAGGGAATACGTAGGAAT+GGG + chr1.3:12488073-12488092 None:intergenic 50.0%
GAGGTTTCCACAGTCGTTTC+TGG + chr1.3:12489305-12489324 None:intergenic 50.0%
GCAAAGCCGCAGAGATGATT+TGG - chr1.3:12487776-12487795 MS.gene067013:CDS 50.0%
GGAAGGTCTTAATACGGTCG+AGG - chr1.3:12488308-12488327 MS.gene067013:CDS 50.0%
TGCCTACCAGTCTTGAACCA+GGG - chr1.3:12488841-12488860 MS.gene067013:intron 50.0%
TGGTTCAAGACTGGTAGGCA+CGG + chr1.3:12488841-12488860 None:intergenic 50.0%
TTGCGACTCTCAACAGTGCA+GGG - chr1.3:12487890-12487909 MS.gene067013:intron 50.0%
CACATCCCCTGGTTCAAGAC+TGG + chr1.3:12488850-12488869 None:intergenic 55.0%
CAGTCTTGAACCAGGGGATG+TGG - chr1.3:12488848-12488867 MS.gene067013:intron 55.0%
CCGGAGGGAATACGTAGGAA+TGG + chr1.3:12488074-12488093 None:intergenic 55.0%
CTTGCAGACCTTGCCAAGGA+AGG + chr1.3:12487971-12487990 None:intergenic 55.0%
CTTGCGACTCTCAACAGTGC+AGG - chr1.3:12487889-12487908 MS.gene067013:intron 55.0%
GCCTACCAGTCTTGAACCAG+GGG - chr1.3:12488842-12488861 MS.gene067013:intron 55.0%
GGGGATGTGGATGAGCATAC+AGG - chr1.3:12488861-12488880 MS.gene067013:intron 55.0%
GTATGCTCATCCACATCCCC+TGG + chr1.3:12488861-12488880 None:intergenic 55.0%
GTGCCTACCAGTCTTGAACC+AGG - chr1.3:12488840-12488859 MS.gene067013:intron 55.0%
TCCCCTGGTTCAAGACTGGT+AGG + chr1.3:12488846-12488865 None:intergenic 55.0%
AGACTGGTAGGCACGGCAAC+TGG + chr1.3:12488834-12488853 None:intergenic 60.0%
GCAGCTTGCAGACCTTGCCA+AGG + chr1.3:12487975-12487994 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 12485381 12489409 12485381 ID=MS.gene067013
chr1.3 mRNA 12485381 12489409 12485381 ID=MS.gene067013.t1;Parent=MS.gene067013
chr1.3 exon 12489334 12489409 12489334 ID=MS.gene067013.t1.exon1;Parent=MS.gene067013.t1
chr1.3 CDS 12489334 12489409 12489334 ID=cds.MS.gene067013.t1;Parent=MS.gene067013.t1
chr1.3 exon 12489198 12489238 12489198 ID=MS.gene067013.t1.exon2;Parent=MS.gene067013.t1
chr1.3 CDS 12489198 12489238 12489198 ID=cds.MS.gene067013.t1;Parent=MS.gene067013.t1
chr1.3 exon 12488529 12488598 12488529 ID=MS.gene067013.t1.exon3;Parent=MS.gene067013.t1
chr1.3 CDS 12488529 12488598 12488529 ID=cds.MS.gene067013.t1;Parent=MS.gene067013.t1
chr1.3 exon 12488272 12488420 12488272 ID=MS.gene067013.t1.exon4;Parent=MS.gene067013.t1
chr1.3 CDS 12488272 12488420 12488272 ID=cds.MS.gene067013.t1;Parent=MS.gene067013.t1
chr1.3 exon 12487702 12487797 12487702 ID=MS.gene067013.t1.exon5;Parent=MS.gene067013.t1
chr1.3 CDS 12487702 12487797 12487702 ID=cds.MS.gene067013.t1;Parent=MS.gene067013.t1
chr1.3 exon 12487536 12487606 12487536 ID=MS.gene067013.t1.exon6;Parent=MS.gene067013.t1
chr1.3 CDS 12487536 12487606 12487536 ID=cds.MS.gene067013.t1;Parent=MS.gene067013.t1
chr1.3 exon 12487115 12487176 12487115 ID=MS.gene067013.t1.exon7;Parent=MS.gene067013.t1
chr1.3 CDS 12487115 12487176 12487115 ID=cds.MS.gene067013.t1;Parent=MS.gene067013.t1
chr1.3 exon 12486952 12487015 12486952 ID=MS.gene067013.t1.exon8;Parent=MS.gene067013.t1
chr1.3 CDS 12486952 12487015 12486952 ID=cds.MS.gene067013.t1;Parent=MS.gene067013.t1
chr1.3 exon 12486738 12486822 12486738 ID=MS.gene067013.t1.exon9;Parent=MS.gene067013.t1
chr1.3 CDS 12486738 12486822 12486738 ID=cds.MS.gene067013.t1;Parent=MS.gene067013.t1
chr1.3 exon 12486498 12486624 12486498 ID=MS.gene067013.t1.exon10;Parent=MS.gene067013.t1
chr1.3 CDS 12486498 12486624 12486498 ID=cds.MS.gene067013.t1;Parent=MS.gene067013.t1
chr1.3 exon 12486256 12486338 12486256 ID=MS.gene067013.t1.exon11;Parent=MS.gene067013.t1
chr1.3 CDS 12486256 12486338 12486256 ID=cds.MS.gene067013.t1;Parent=MS.gene067013.t1
chr1.3 exon 12485908 12485962 12485908 ID=MS.gene067013.t1.exon12;Parent=MS.gene067013.t1
chr1.3 CDS 12485908 12485962 12485908 ID=cds.MS.gene067013.t1;Parent=MS.gene067013.t1
chr1.3 exon 12485667 12485794 12485667 ID=MS.gene067013.t1.exon13;Parent=MS.gene067013.t1
chr1.3 CDS 12485667 12485794 12485667 ID=cds.MS.gene067013.t1;Parent=MS.gene067013.t1
chr1.3 exon 12485381 12485545 12485381 ID=MS.gene067013.t1.exon14;Parent=MS.gene067013.t1
chr1.3 CDS 12485381 12485545 12485381 ID=cds.MS.gene067013.t1;Parent=MS.gene067013.t1
Gene Sequence

>MS.gene067013

ATGGAAAAGGTTGTTGGAGGAAAGTATAGAGTTGGTAGGAAAATTGGTAGTGGATCATTTGGTGAAATTTATATTGGTATGAATCATAAGAAACTTTATTTCATTTTGCATGTTTGAATTAATTTTTTTTTTTTTTGTTTAATGTTTGAGTTAATTTATGATCATTTTCAGGTGCACATGTTGTGACTTCTGAGCTTGTGGCCATTAAGAAGGTTAGTCTAATGGAGAAATTGTTGCTTTGATTTTTGGTTATTGCTAAGAATTTTCCTATTTTTTTTCTTTATTTGTTGTAATAATTGTGATTAGGAAGTGATCATTTTGAGTTAATTATTGCATTTTAAATATGAAGAGACAATAATTGTGTTAATTGCTATGAATTACAAATACTCCTGGGATTAGGCATCCTAAGAATAGGTGTATCTTAGTTGTATGACACTCGTATGACATCCGTGCAACACATGTCTGACAACTTAGACATGTGTTCCGAAAAAAAAAAAAAAAATTCCCGTTGCTTTTATATACCTTGGATACTCTCGAACACATTCTAGTCACAGTTACGGTAATAATGGTGATGATCGATGAGAGAGTTACCTTAAATTTGATTACATCATTTTTATCTTTTGGGTAGTACATGGATGGATGAAGCTTAAAGACTAGGATATCTTATATTATAAATTTTTTGTAATGAATCAAATTGCTCAATTAGATGCATGTTTAAATTTTGATTGTTAATTTACTCTTTTGGTCACTGAACGTGTAAAAAGTCCTCAACTATGTGATGGTTTATAATAGACATATTCTTGTTTTATAGGAGAAGAAGAAAACTCAACAACCACAGCTACTATATGAGGCAAAGTTATATAATATTCTTAAAGGAGGAAGTAAGTTATAAAAGCATAACTTCAATTTATGTTGAGCTTGTTTCCCTCACAATATTATTCCTTTGTTTTCTTAGTCCTTTCTAATTTATTATAGTGATGGAATTTAAGGTGGTATTCCAAGAATGAAATGGTTTGGTACTGATGGAGACTATAATGTTCTAGTTCTTGAACTTATGGGTCCGAGTCTCGATGACCTGCTTTACTACTGTAGTGGGAAGTTTTCGCTAAAATCGGTTTTGATGTTGGCCGATCAAATGGTAATCATTGATTCGTCTATGGACCGTTGAATGCATCTTTTCCTTTCTGTTTTTAAATTTGTCTTCTTTATATGATCATGTTTTCTGTATGCTATTGGAGATGTTTTCTCTCTTTGTATTCCTTCTTTTTACATCAAACTTGCATCAACGGTTTTGAGCACATTAGTTTAAAATGGAGGGTCTATTTCGATATACAGCTTAATTAAGTGCTTATAGCATAAGTGTTTATCATATAAATGCATATATTATATATAAGCTATGTCTTTTGTTATAACATAAGAAAAAATAAATTCAAATTGTGTTCATATAAGCTATCAGTTGTTTTCATAAGCTATCTGAGAGAGCTTATGGAAATAAGCTAAACACAACTAATGGACATGTCATAAGCTGTTTTCGTTAGTGTTTATATTAGTAGATATACTCAAATAAGTAAATCAAACAGGCCCTAAGCCTGTTTTATTTCTTTGATGACAGCTTACGAGGATAGAGTATTTACATTCCAAGGGATTACTACACAGAGATATCAAACCGGATAACTTTCTTATGGGTCTTGGGAAGAAAGCAAATCAGGTAGCTTCAATGCTTCATTAGTATTCTTCCATGTTTTAATTCCTCTATAGTTCCAATTTTTAACGTATGATTTATGAAATATGTTACAATAACAGGTTTGTATGATTGATTTTGGACTTTCAAAAGGATACAGGGATCCTATCAGTTACAAGCATATCCCTTACAGGTATAAGATTTTCTATCTAGTTTTATAATTTTTGTTTGATCTCTTCTTGATATGGATCATATTTATCATGTGTTGTATAGTAACGTTTTCTAGTCACTTAAACCTAAATAACAGCTTTTCTGTCATACGATTTTTAAAGTCAATAATAAGCGATGAAACATCTTTCTGTTGCGAGTCATTTCTCTTTCTGTCAATCTGAAATCTTCGAAATTGTCATATATTGATTTTAACTTTGATTTTTATTTTCTGAAACGATTTTGCTTGATTCATTCTTAGTGGCTTGTCCCTTACCACTTTGAATTAAGCTATCTATGTTTACGTTGTTTAATATTTTGTTTTACCTTGATAAACTCATCCAGAGAGAACAAAAACTTAACAGGAACTGCACGTTATGCAAGTAGCAATACTCACAAAGGAATTGGTTAGTAAATGAGAGAATTTTTCCTTCTTTATTGTCTTTAGGTATGATGTAACCACGGAGTAACTATTCTCACTCACAATTTTGGTTTAACTTCTTCAGAGCAAAGCCGCAGAGATGATTTGGAGTCTCTTGGCTATGTTCTTTTGTACTTTTTAAGAGGAAGGTATATCTCATCCTATTGATTCTACTTTTACCATGCATCATAAGATGTTGCTTGCGACTCTCAACAGTGCAGGGTTATTTTTGTAAACGTAAGACTTGACTATTTGGTTTTTGCGTTTTTGCATTTTAGCCTTCCTTGGCAAGGTCTGCAAGCTGCCACCAGAATGCAAAAATATGAAAAAATATGCGAAACAAAGTTAAACACTCCCGTTGAGGTATGCGTATCATGCTTCCCATTCCTACGTATTCCCTCCGGTATTAAACATAAGTAAAAAGTACATGTATTTCATCTAAAAATGTTTTCTGATTACAAATTTCTTGTTCTTAGGTACTTTGCAAGTCATGTCCCGTGGAGTTTGCTTCTTACTTTCATTATTGCCGCTCCTTGACATTCGATCAACGACCAGATTATGGATATTTGAAGCGCCTGTTTCGTGAATTGTTCACTTCTAAAGGTAATTGGCCAAACTGGAAGGTCTTAATACGGTCGAGGATTTTCAATTTCAGGAATTACTTTACAATTTTCATTAATTTCAGAGACCAAATTGTTTGATACTCACGATTTCAGAAACTAAACTGAAATGTAATTCACTTCCTAAATTTATGTTTGGCAGGATATGATGCTGACTATTTATATGACTGGACGATTTTAAAATATCAGGAGATTCAACAGATAAAGGCACAAAATCAATCAATAGTGCGTGATTCTTTGCCAAGCTTCAATTTTTATTTTGAATGATATAGTTAAATTCAAACTTTGGTCACCCTTTTCATGGTTAAATTTTTATCACAGTGCTCTAACCTTTTTTCTTCGTTGTGACATGTTAAGTTAAAGCTTTAAAAGCCTCTTAAACATTTTAATTCCAATTAGTACTTTTTTTTTCTTTTCCTATTTTCATTTGTAGAAATGTAAAATGTATACGGATTTTCTGATAGCTTTTGCATTAAAATTTTACTGATTTTGTTTGATTTCTCGTTGGAAATTTGTAGGCTCCAGTTGCCGTGCCTACCAGTCTTGAACCAGGGGATGTGGATGAGCATACAGGTAACTTCATTCTTGTAGTTGAAGAATTGTTTGTGAATTCTTTCACAATATTTTCCGTATTGTGAAGGAATGCACTCCCGAGCATGTTGTAATGGCTTTAGTTCCTTTTTCAGAATACAATGATTGTACTCAAAATGCTGTGCCAAAACCAAAAATCTATACCGACCGTCCACGTGTTTGTATGAAGCTCAGGGTAGCTAACGTCGACAATCTTGATGATGAGATTCAAACAGATACACAAGTATACCTCTCTGCATGCTGAAGTTATTAGTTATTACTTAAACTATACTGATATTGAATTGAAGTTACATTCATATATTTTGCTGAAGTAACTCACTTTGAATTGGATATGATTTTTGCAGAATGTGAATACTGATTTACCTATTTCCACTGTCATGCCTAAGGAAGATGTTCCAAAACCAGAAACGACTGTGGAAACCTCAAACCCTAATGACGTGTTAGGGAGTAAATGTGGTGCTTCTGATGACTTGGTTCCTTCAATACGCCGAGTTCCATCCATCAATTAG
Protein sequence

>MS.gene067013.t1

MEKVVGGKYRVGRKIGSGSFGEIYIGAHVVTSELVAIKKEKKKTQQPQLLYEAKLYNILKGGSGIPRMKWFGTDGDYNVLVLELMGPSLDDLLYYCSGKFSLKSVLMLADQMLTRIEYLHSKGLLHRDIKPDNFLMGLGKKANQVCMIDFGLSKGYRDPISYKHIPYRENKNLTGTARYASSNTHKGIEQSRRDDLESLGYVLLYFLRGSLPWQGLQAATRMQKYEKICETKLNTPVEVLCKSCPVEFASYFHYCRSLTFDQRPDYGYLKRLFRELFTSKGYDADYLYDWTILKYQEIQQIKAQNQSIAPVAVPTSLEPGDVDEHTEYNDCTQNAVPKPKIYTDRPRVCMKLRVANVDNLDDEIQTDTQNVNTDLPISTVMPKEDVPKPETTVETSNPNDVLGSKCGASDDLVPSIRRVPSIN