Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06711.t1 | AFK39430.1 | 95.5 | 44 | 2 | 0 | 86 | 129 | 477 | 520 | 6.50E-17 | 97.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06711.t1 | Q9FH36 | 75.0 | 44 | 11 | 0 | 86 | 129 | 470 | 513 | 2.6e-14 | 80.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06711.t1 | G7IHE2 | 95.5 | 44 | 2 | 0 | 86 | 129 | 477 | 520 | 4.7e-17 | 97.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene06711.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06711.t1 | MTR_2g082650 | 95.455 | 44 | 2 | 0 | 86 | 129 | 477 | 520 | 3.01e-24 | 98.2 |
| MS.gene06711.t1 | MTR_2g082650 | 95.455 | 44 | 2 | 0 | 86 | 129 | 348 | 391 | 1.04e-23 | 96.3 |
| MS.gene06711.t1 | MTR_4g133570 | 77.273 | 44 | 10 | 0 | 86 | 129 | 400 | 443 | 1.39e-18 | 82.0 |
| MS.gene06711.t1 | MTR_7g012370 | 53.571 | 56 | 26 | 0 | 86 | 141 | 473 | 528 | 2.17e-13 | 67.4 |
| MS.gene06711.t1 | MTR_6g013840 | 56.818 | 44 | 19 | 0 | 86 | 129 | 468 | 511 | 8.70e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06711.t1 | AT5G54690 | 75.000 | 44 | 11 | 0 | 86 | 129 | 470 | 513 | 4.24e-18 | 80.9 |
| MS.gene06711.t1 | AT5G15470 | 56.818 | 44 | 19 | 0 | 86 | 129 | 468 | 511 | 4.44e-12 | 63.5 |
| MS.gene06711.t1 | AT3G01040 | 54.545 | 44 | 20 | 0 | 86 | 129 | 435 | 478 | 2.60e-11 | 61.2 |
| MS.gene06711.t1 | AT3G01040 | 54.545 | 44 | 20 | 0 | 86 | 129 | 468 | 511 | 2.77e-11 | 61.2 |
| MS.gene06711.t1 | AT3G01040 | 54.545 | 44 | 20 | 0 | 86 | 129 | 468 | 511 | 2.77e-11 | 61.2 |
| MS.gene06711.t1 | AT3G25140 | 52.273 | 44 | 21 | 0 | 86 | 129 | 495 | 538 | 8.50e-11 | 59.7 |
Find 34 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCACGTTATAGATCCTTTC+TGG | 0.192422 | 3.3:+76299098 | MS.gene06711:intron |
| GCTTTAGTTCCAACTGCTTC+TGG | 0.255110 | 3.3:+76296540 | MS.gene06711:CDS |
| GTCCACAATGACCTTAGTTC+TGG | 0.325187 | 3.3:-76299229 | None:intergenic |
| TAGTTCTTCTTCCACTGATT+AGG | 0.370993 | 3.3:+76299383 | MS.gene06711:CDS |
| TTCTGGCATATGCTTGGATT+GGG | 0.375631 | 3.3:+76299115 | MS.gene06711:CDS |
| TTTCTGGCATATGCTTGGAT+TGG | 0.395599 | 3.3:+76299114 | MS.gene06711:CDS |
| CAACCGAGACAACAATGATA+TGG | 0.411465 | 3.3:+76299416 | MS.gene06711:CDS |
| GAGTTGTGTTTCGATCTTTG+TGG | 0.421977 | 3.3:-76296494 | None:intergenic |
| GATCCTTTCTGGCATATGCT+TGG | 0.446300 | 3.3:+76299109 | MS.gene06711:intron |
| TCTCAGTTCTGTGCAATGTC+GGG | 0.452820 | 3.3:+76296267 | MS.gene06711:intron |
| AGTGATGATCTCATGCCTCT+TGG | 0.467908 | 3.3:+76296054 | MS.gene06711:CDS |
| CATTGTTGTCTCGGTTGTCA+TGG | 0.493701 | 3.3:-76299410 | None:intergenic |
| GTTGTCTCGGTTGTCATGGA+AGG | 0.501921 | 3.3:-76299406 | None:intergenic |
| GATGATCTCATGCCTCTTGG+TGG | 0.502003 | 3.3:+76296057 | MS.gene06711:CDS |
| GTGTCATCGATTTCAATGGC+AGG | 0.503468 | 3.3:+76299179 | MS.gene06711:CDS |
| TTCTCAGTTCTGTGCAATGT+CGG | 0.504892 | 3.3:+76296266 | MS.gene06711:intron |
| GATGTGGTATTTGTAATCCA+AGG | 0.509197 | 3.3:+76299344 | MS.gene06711:intron |
| GTTGATGATGTTGAGAATGC+TGG | 0.527031 | 3.3:+76299157 | MS.gene06711:CDS |
| ATGCCATATCATTGTTGTCT+CGG | 0.531199 | 3.3:-76299419 | None:intergenic |
| ATGCCTCTTGGTGGTTCGCG+CGG | 0.552185 | 3.3:+76296066 | MS.gene06711:CDS |
| TTTGTGGATCTTGTTCAGAA+AGG | 0.552681 | 3.3:-76296478 | None:intergenic |
| GCTGGTGTCATCGATTTCAA+TGG | 0.562896 | 3.3:+76299175 | MS.gene06711:CDS |
| AATCCAAGCATATGCCAGAA+AGG | 0.569673 | 3.3:-76299112 | None:intergenic |
| AAGTTGAATGAGTGAGAAGG+AGG | 0.583243 | 3.3:-76296018 | None:intergenic |
| CAAAACATACCAGAAGCAGT+TGG | 0.593402 | 3.3:-76296549 | None:intergenic |
| ATGTGGTATTTGTAATCCAA+GGG | 0.603557 | 3.3:+76299345 | MS.gene06711:CDS |
| ACAACAATGATATGGCATCA+TGG | 0.611409 | 3.3:+76299424 | MS.gene06711:CDS |
| TCAATGGCAGGGCAAAGCCA+TGG | 0.623067 | 3.3:+76299191 | MS.gene06711:CDS |
| TGTCATCGATTTCAATGGCA+GGG | 0.640230 | 3.3:+76299180 | MS.gene06711:CDS |
| GGAAAAGCTATGTCTAGCCA+TGG | 0.645591 | 3.3:-76299208 | None:intergenic |
| GAGAGTTGAAGTTTGAACGA+CGG | 0.650339 | 3.3:-76296295 | None:intergenic |
| TGAAAGTTGAATGAGTGAGA+AGG | 0.655625 | 3.3:-76296021 | None:intergenic |
| GTCATGGAAGGCCTAATCAG+TGG | 0.658539 | 3.3:-76299394 | None:intergenic |
| TTTCCGCGCGAACCACCAAG+AGG | 0.698046 | 3.3:-76296069 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATATCAATCAATAGAA+AGG | - | chr3.3:76296977-76296996 | None:intergenic | 15.0% |
| !! | TAAATATCAATCAATAGAAA+GGG | - | chr3.3:76296976-76296995 | None:intergenic | 15.0% |
| !! | TATATATTGGAAATAGAAAA+AGG | + | chr3.3:76297463-76297482 | MS.gene06711:intron | 15.0% |
| !! | TATTCTAAATTTGTAACTAA+AGG | + | chr3.3:76297209-76297228 | MS.gene06711:intron | 15.0% |
| !!! | AATTTCAATCTTATTTTTGT+TGG | + | chr3.3:76298206-76298225 | MS.gene06711:intron | 15.0% |
| !!! | ATTTCAATCTTATTTTTGTT+GGG | + | chr3.3:76298207-76298226 | MS.gene06711:intron | 15.0% |
| !!! | ATTTTGTTTATAATTGAGTT+AGG | + | chr3.3:76297146-76297165 | MS.gene06711:intron | 15.0% |
| !! | AAAATAAAAATTAACCGAGA+GGG | - | chr3.3:76296153-76296172 | None:intergenic | 20.0% |
| !! | AAATTAGTTGAAATAGAAAG+GGG | + | chr3.3:76296385-76296404 | MS.gene06711:intron | 20.0% |
| !! | AAATTTGTAACTAAAGGTTT+GGG | + | chr3.3:76297215-76297234 | MS.gene06711:intron | 20.0% |
| !! | AAGAATTTGGATAAAAGATT+TGG | + | chr3.3:76298673-76298692 | MS.gene06711:intron | 20.0% |
| !! | AATAGTATCAAGTCAAAATT+GGG | - | chr3.3:76298005-76298024 | None:intergenic | 20.0% |
| !! | ATTAAATACATGGAAACAAA+TGG | - | chr3.3:76297514-76297533 | None:intergenic | 20.0% |
| !! | CTATATTCTATATGAAGAAA+AGG | - | chr3.3:76297961-76297980 | None:intergenic | 20.0% |
| !! | GAAATTAGTTGAAATAGAAA+GGG | + | chr3.3:76296384-76296403 | MS.gene06711:intron | 20.0% |
| !! | GCTATTGAATAAAATGATAA+TGG | + | chr3.3:76298070-76298089 | MS.gene06711:intron | 20.0% |
| !! | GGATGACAAAATATATATAT+TGG | + | chr3.3:76297450-76297469 | MS.gene06711:intron | 20.0% |
| !! | TAAAATAAAAATTAACCGAG+AGG | - | chr3.3:76296154-76296173 | None:intergenic | 20.0% |
| !! | TAAATTTGTAACTAAAGGTT+TGG | + | chr3.3:76297214-76297233 | MS.gene06711:intron | 20.0% |
| !!! | CTTAATGGTTTTTAAGAATT+TGG | + | chr3.3:76298660-76298679 | MS.gene06711:intron | 20.0% |
| !!! | TCATTGGTTTCATAAATTAT+GGG | + | chr3.3:76298971-76298990 | MS.gene06711:intron | 20.0% |
| !!! | TTTCAATCTTATTTTTGTTG+GGG | + | chr3.3:76298208-76298227 | MS.gene06711:intron | 20.0% |
| !!! | TTTCCATGTATTTTTTGTTT+TGG | + | chr3.3:76297429-76297448 | MS.gene06711:intron | 20.0% |
| !!! | TTTTAAATTATGTGCCTTTT+TGG | + | chr3.3:76296197-76296216 | MS.gene06711:intron | 20.0% |
| !!! | TTTTAACCTTGATAGATTAT+TGG | + | chr3.3:76298507-76298526 | MS.gene06711:intron | 20.0% |
| ! | AAACATGTTTACCAAATATG+TGG | - | chr3.3:76297408-76297427 | None:intergenic | 25.0% |
| ! | AAGATTGATCAATATCTTAG+TGG | - | chr3.3:76298271-76298290 | None:intergenic | 25.0% |
| ! | AATTGAGTTCAGTTATTCAA+AGG | + | chr3.3:76297381-76297400 | MS.gene06711:intron | 25.0% |
| ! | AGTCAATTGTGATTCTTATT+AGG | + | chr3.3:76297274-76297293 | MS.gene06711:intron | 25.0% |
| ! | ATAGATTATTGGATAATCTC+AGG | + | chr3.3:76298518-76298537 | MS.gene06711:intron | 25.0% |
| ! | ATTGAGTTCAGTTATTCAAA+GGG | + | chr3.3:76297382-76297401 | MS.gene06711:intron | 25.0% |
| ! | CATCCAAAACAAAAAATACA+TGG | - | chr3.3:76297435-76297454 | None:intergenic | 25.0% |
| ! | GAATAGTATCAAGTCAAAAT+TGG | - | chr3.3:76298006-76298025 | None:intergenic | 25.0% |
| ! | GATTATCCAATAATCTATCA+AGG | - | chr3.3:76298516-76298535 | None:intergenic | 25.0% |
| ! | GGAAATTAGTTGAAATAGAA+AGG | + | chr3.3:76296383-76296402 | MS.gene06711:intron | 25.0% |
| ! | TAAACAACCATTAACAGAAA+GGG | - | chr3.3:76296870-76296889 | None:intergenic | 25.0% |
| ! | TATTGCACAGATTAAATACA+TGG | - | chr3.3:76297524-76297543 | None:intergenic | 25.0% |
| ! | TTATGTCTTTATGTTCAAGT+TGG | + | chr3.3:76296576-76296595 | MS.gene06711:intron | 25.0% |
| ! | TTATTGGTAAAGAAAGAATC+AGG | + | chr3.3:76296362-76296381 | MS.gene06711:intron | 25.0% |
| ! | TTCAATCACAAGACAAATTA+AGG | + | chr3.3:76297551-76297570 | MS.gene06711:intron | 25.0% |
| ! | TTGCAAAATTACCAAATATG+TGG | - | chr3.3:76297349-76297368 | None:intergenic | 25.0% |
| ! | TTGTCAATTATCTGATATAG+TGG | + | chr3.3:76298394-76298413 | MS.gene06711:intron | 25.0% |
| ! | TTGTTAAATAACAGCTATAG+TGG | - | chr3.3:76298891-76298910 | None:intergenic | 25.0% |
| ! | TTTAATCTGTGCAATATGTT+TGG | + | chr3.3:76297528-76297547 | MS.gene06711:intron | 25.0% |
| !! | AAGTTGTATCTAAAATCAGT+AGG | - | chr3.3:76296769-76296788 | None:intergenic | 25.0% |
| !! | GTCACTTTAATCTTTGTTAT+TGG | + | chr3.3:76296346-76296365 | MS.gene06711:intron | 25.0% |
| !! | TTTTAGATACAACTTTCTTC+TGG | + | chr3.3:76296774-76296793 | MS.gene06711:intron | 25.0% |
| !!! | GAACTTTTAGAGAAAAACAT+TGG | + | chr3.3:76296711-76296730 | MS.gene06711:intron | 25.0% |
| !!! | GTCATTGGTTTCATAAATTA+TGG | + | chr3.3:76298970-76298989 | MS.gene06711:intron | 25.0% |
| !!! | TAAGTTTATTGGTTCTGTTA+TGG | + | chr3.3:76297741-76297760 | MS.gene06711:intron | 25.0% |
| !!! | TATTTGGTAATTTTGCAACT+AGG | + | chr3.3:76297351-76297370 | MS.gene06711:intron | 25.0% |
| !!! | TGTTAATGGTTGTTTAGTTT+TGG | + | chr3.3:76296874-76296893 | MS.gene06711:intron | 25.0% |
| AAAACTGAGTCATAGACATA+GGG | - | chr3.3:76297799-76297818 | None:intergenic | 30.0% | |
| AACTCATAATTGAGAAGTCA+TGG | - | chr3.3:76299321-76299340 | None:intergenic | 30.0% | |
| AATTGAGTTCAGTGATTCAA+AGG | + | chr3.3:76297322-76297341 | MS.gene06711:intron | 30.0% | |
| ACAAGACAAATTAAGGTTAG+TGG | + | chr3.3:76297558-76297577 | MS.gene06711:intron | 30.0% | |
| ACTTAATTAATGTTCAAGCC+TGG | - | chr3.3:76297664-76297683 | None:intergenic | 30.0% | |
| ATATAGCAGTTATAGCATAG+CGG | + | chr3.3:76298321-76298340 | MS.gene06711:intron | 30.0% | |
| ATCACTCAAATCAACCAAAA+AGG | - | chr3.3:76296214-76296233 | None:intergenic | 30.0% | |
| ATGTGGTATTTGTAATCCAA+GGG | + | chr3.3:76299345-76299364 | MS.gene06711:CDS | 30.0% | |
| ATTCATGAGATGATAGATAG+TGG | + | chr3.3:76298945-76298964 | MS.gene06711:intron | 30.0% | |
| ATTGAGTTCAGTGATTCAAA+GGG | + | chr3.3:76297323-76297342 | MS.gene06711:intron | 30.0% | |
| CAACACTGGAACATATTAAA+AGG | + | chr3.3:76298908-76298927 | MS.gene06711:intron | 30.0% | |
| CATCAGAATTGCTTAAAGTT+TGG | + | chr3.3:76298117-76298136 | MS.gene06711:intron | 30.0% | |
| CATGAAATAGAGAGAATGAA+AGG | - | chr3.3:76299072-76299091 | None:intergenic | 30.0% | |
| CTAAACAACCATTAACAGAA+AGG | - | chr3.3:76296871-76296890 | None:intergenic | 30.0% | |
| CTTAATTAATGTTCAAGCCT+GGG | - | chr3.3:76297663-76297682 | None:intergenic | 30.0% | |
| CTTTCATTCTCTCTATTTCA+TGG | + | chr3.3:76299070-76299089 | MS.gene06711:intron | 30.0% | |
| GATATTGATCAATCTTGATG+TGG | + | chr3.3:76298275-76298294 | MS.gene06711:intron | 30.0% | |
| GGGTCAAATCTTAAGTTTAT+TGG | + | chr3.3:76297730-76297749 | MS.gene06711:intron | 30.0% | |
| GTTCAAATTTCAAACCATAG+AGG | - | chr3.3:76297249-76297268 | None:intergenic | 30.0% | |
| TAAAACTGAGTCATAGACAT+AGG | - | chr3.3:76297800-76297819 | None:intergenic | 30.0% | |
| TCAATCAATAGAAAGGGATT+TGG | - | chr3.3:76296970-76296989 | None:intergenic | 30.0% | |
| TCAATTATGAGTTACAGATG+TGG | + | chr3.3:76299328-76299347 | MS.gene06711:intron | 30.0% | |
| TGACAAAAATTTGTACCAAG+TGG | + | chr3.3:76298816-76298835 | MS.gene06711:intron | 30.0% | |
| TTGTGAGTGTTTAACGAAAT+CGG | - | chr3.3:76296739-76296758 | None:intergenic | 30.0% | |
| TTTCTTCTGGATCTCAATTA+AGG | + | chr3.3:76296787-76296806 | MS.gene06711:intron | 30.0% | |
| ! | ACTATTATTGGTTGGCATTA+CGG | + | chr3.3:76298635-76298654 | MS.gene06711:intron | 30.0% |
| ! | ATCTCATTTTCTTTTTCCCT+TGG | - | chr3.3:76299364-76299383 | None:intergenic | 30.0% |
| ! | TAGCTGTTATTTAACAACAC+TGG | + | chr3.3:76298894-76298913 | MS.gene06711:intron | 30.0% |
| ! | TGCTACTATAGATTTTGCTT+TGG | + | chr3.3:76296932-76296951 | MS.gene06711:intron | 30.0% |
| ! | TTTTCACCTTAACTAGCAAT+TGG | - | chr3.3:76297932-76297951 | None:intergenic | 30.0% |
| !! | AAATGATAATGGTCAGTTGT+TGG | + | chr3.3:76298081-76298100 | MS.gene06711:intron | 30.0% |
| !! | TCTCATACTTCACTTTTGTA+AGG | + | chr3.3:76296314-76296333 | MS.gene06711:intron | 30.0% |
| AAATAACAGCTATAGTGGTG+CGG | - | chr3.3:76298886-76298905 | None:intergenic | 35.0% | |
| ACAACAATGATATGGCATCA+TGG | + | chr3.3:76299424-76299443 | MS.gene06711:CDS | 35.0% | |
| ACCATTAACAGAAAGGGATT+TGG | - | chr3.3:76296864-76296883 | None:intergenic | 35.0% | |
| AGGTGGTTAGTATACACATA+GGG | - | chr3.3:76297874-76297893 | None:intergenic | 35.0% | |
| ATGCCATATCATTGTTGTCT+CGG | - | chr3.3:76299422-76299441 | None:intergenic | 35.0% | |
| CACACGCTATTTAGTACAAA+AGG | + | chr3.3:76298371-76298390 | MS.gene06711:intron | 35.0% | |
| CAGCCACTTATTTAATCCAA+CGG | - | chr3.3:76296666-76296685 | None:intergenic | 35.0% | |
| CTCAATTAAGGTCACAAACT+TGG | + | chr3.3:76296799-76296818 | MS.gene06711:intron | 35.0% | |
| GATGTGGTATTTGTAATCCA+AGG | + | chr3.3:76299344-76299363 | MS.gene06711:intron | 35.0% | |
| GTTTGAATTGTTTGCTCATG+AGG | + | chr3.3:76296424-76296443 | MS.gene06711:intron | 35.0% | |
| TATACTAGAGCACAACTTGA+TGG | + | chr3.3:76297696-76297715 | MS.gene06711:intron | 35.0% | |
| TATTCAAAGGGCCACATATT+TGG | + | chr3.3:76297394-76297413 | MS.gene06711:intron | 35.0% | |
| TCCAAATCCCTTTCTGTTAA+TGG | + | chr3.3:76296860-76296879 | MS.gene06711:intron | 35.0% | |
| TGAAAGTTGAATGAGTGAGA+AGG | - | chr3.3:76296024-76296043 | None:intergenic | 35.0% | |
| TGAACTCAATTTAAGTCTCC+TGG | - | chr3.3:76297313-76297332 | None:intergenic | 35.0% | |
| TGGTTACCAATTGCTAGTTA+AGG | + | chr3.3:76297923-76297942 | MS.gene06711:intron | 35.0% | |
| TTGTTCTACAATATGCCACT+TGG | - | chr3.3:76298834-76298853 | None:intergenic | 35.0% | |
| TTTAATCCAACGGCCAATAA+TGG | - | chr3.3:76296656-76296675 | None:intergenic | 35.0% | |
| TTTGTGGATCTTGTTCAGAA+AGG | - | chr3.3:76296481-76296500 | None:intergenic | 35.0% | |
| ! | ACAAATGGTGTACTGTTTCT+TGG | - | chr3.3:76297499-76297518 | None:intergenic | 35.0% |
| ! | ACATAGCTTTTCCAGAACTA+AGG | + | chr3.3:76299218-76299237 | MS.gene06711:CDS | 35.0% |
| ! | AGTTATAGCATAGCGGAATT+TGG | + | chr3.3:76298328-76298347 | MS.gene06711:intron | 35.0% |
| ! | ATCAAGTTGTGCTCTAGTAT+AGG | - | chr3.3:76297697-76297716 | None:intergenic | 35.0% |
| ! | CAATAAGAGCACATTCAGAT+AGG | + | chr3.3:76297629-76297648 | MS.gene06711:intron | 35.0% |
| ! | CTTTTGTACTAAATAGCGTG+TGG | - | chr3.3:76298373-76298392 | None:intergenic | 35.0% |
| ! | TAGTTCTTCTTCCACTGATT+AGG | + | chr3.3:76299383-76299402 | MS.gene06711:CDS | 35.0% |
| !! | AACTTGATGGCGTATTAGTT+AGG | + | chr3.3:76297709-76297728 | MS.gene06711:intron | 35.0% |
| !! | ACTTGATGGCGTATTAGTTA+GGG | + | chr3.3:76297710-76297729 | MS.gene06711:intron | 35.0% |
| !! | CTCATTGTGCTGACTATTAT+TGG | + | chr3.3:76298623-76298642 | MS.gene06711:intron | 35.0% |
| !! | TGATAGATAGTGGATGTCAT+TGG | + | chr3.3:76298955-76298974 | MS.gene06711:intron | 35.0% |
| !! | TTGTGCTGACTATTATTGGT+TGG | + | chr3.3:76298627-76298646 | MS.gene06711:intron | 35.0% |
| AAATAATGTGACCCTAGCAG+CGG | - | chr3.3:76298797-76298816 | None:intergenic | 40.0% | |
| AACGGCCAATAATGGTTCAT+CGG | - | chr3.3:76296648-76296667 | None:intergenic | 40.0% | |
| AAGTTGAATGAGTGAGAAGG+AGG | - | chr3.3:76296021-76296040 | None:intergenic | 40.0% | |
| AATCCAAGCATATGCCAGAA+AGG | - | chr3.3:76299115-76299134 | None:intergenic | 40.0% | |
| ATCTGATATAGTGGCGCTAT+AGG | + | chr3.3:76298403-76298422 | MS.gene06711:intron | 40.0% | |
| CAAAACATACCAGAAGCAGT+TGG | - | chr3.3:76296552-76296571 | None:intergenic | 40.0% | |
| CAACCGAGACAACAATGATA+TGG | + | chr3.3:76299416-76299435 | MS.gene06711:CDS | 40.0% | |
| CAGTTCCACATCGCAAAAAA+TGG | + | chr3.3:76298735-76298754 | MS.gene06711:intron | 40.0% | |
| GAGAGTTGAAGTTTGAACGA+CGG | - | chr3.3:76296298-76296317 | None:intergenic | 40.0% | |
| GAGGTGGTTAGTATACACAT+AGG | - | chr3.3:76297875-76297894 | None:intergenic | 40.0% | |
| GAGTTGTGTTTCGATCTTTG+TGG | - | chr3.3:76296497-76296516 | None:intergenic | 40.0% | |
| GATAATCTCAGGCTTGAGTA+GGG | + | chr3.3:76298529-76298548 | MS.gene06711:intron | 40.0% | |
| GATTCAAAGGGCCACATATT+TGG | + | chr3.3:76297335-76297354 | MS.gene06711:intron | 40.0% | |
| GCTATAGGACTATTTCGTAG+TGG | + | chr3.3:76298418-76298437 | MS.gene06711:intron | 40.0% | |
| GCTGTCATGTCATGAAATGA+TGG | + | chr3.3:76297048-76297067 | MS.gene06711:intron | 40.0% | |
| TCCACGTTATAGATCCTTTC+TGG | + | chr3.3:76299098-76299117 | MS.gene06711:intron | 40.0% | |
| TGGCCGTTGGATTAAATAAG+TGG | + | chr3.3:76296660-76296679 | MS.gene06711:intron | 40.0% | |
| TGTCGCATTAGAGCATGATA+GGG | + | chr3.3:76299289-76299308 | MS.gene06711:intron | 40.0% | |
| TTAATGTTCAAGCCTGGGAT+TGG | - | chr3.3:76297658-76297677 | None:intergenic | 40.0% | |
| TTAGGTGTCTATTTGCAACC+AGG | + | chr3.3:76297292-76297311 | MS.gene06711:intron | 40.0% | |
| TTCCAGAACTAAGGTCATTG+TGG | + | chr3.3:76299227-76299246 | MS.gene06711:intron | 40.0% | |
| TTCTCAGTTCTGTGCAATGT+CGG | + | chr3.3:76296266-76296285 | MS.gene06711:intron | 40.0% | |
| TTCTGGCATATGCTTGGATT+GGG | + | chr3.3:76299115-76299134 | MS.gene06711:CDS | 40.0% | |
| TTGGGTTTCTACTACATGTG+AGG | - | chr3.3:76297987-76298006 | None:intergenic | 40.0% | |
| TTTCATGTTTCTTCCTCTCG+TGG | + | chr3.3:76297026-76297045 | MS.gene06711:intron | 40.0% | |
| ! | ATCGACAACATTGGTTACGT+TGG | + | chr3.3:76298475-76298494 | MS.gene06711:intron | 40.0% |
| ! | CAATTGGTAACCAAATCACG+TGG | - | chr3.3:76297916-76297935 | None:intergenic | 40.0% |
| ! | TTTCTGGCATATGCTTGGAT+TGG | + | chr3.3:76299114-76299133 | MS.gene06711:CDS | 40.0% |
| ! | TTTGGGATCAAAAGCCTCTA+TGG | + | chr3.3:76297232-76297251 | MS.gene06711:intron | 40.0% |
| !! | CTGCTAGAACTTTGTTGTTG+AGG | - | chr3.3:76296604-76296623 | None:intergenic | 40.0% |
| !! | GTTGATGATGTTGAGAATGC+TGG | + | chr3.3:76299157-76299176 | MS.gene06711:CDS | 40.0% |
| !! | TGTCATCGATTTCAATGGCA+GGG | + | chr3.3:76299180-76299199 | MS.gene06711:CDS | 40.0% |
| !!! | CATTTTTTGCGATGTGGAAC+TGG | - | chr3.3:76298737-76298756 | None:intergenic | 40.0% |
| ACGGCCAATAATGGTTCATC+GGG | - | chr3.3:76296647-76296666 | None:intergenic | 45.0% | |
| AGCAATAGAGAACTAGCTGC+CGG | + | chr3.3:76296834-76296853 | MS.gene06711:intron | 45.0% | |
| AGTGATGATCTCATGCCTCT+TGG | + | chr3.3:76296054-76296073 | MS.gene06711:CDS | 45.0% | |
| ATGTTGTCGATCGCAAACGA+CGG | - | chr3.3:76298466-76298485 | None:intergenic | 45.0% | |
| CATTGTTGTCTCGGTTGTCA+TGG | - | chr3.3:76299413-76299432 | None:intergenic | 45.0% | |
| CTGTCGCATTAGAGCATGAT+AGG | + | chr3.3:76299288-76299307 | MS.gene06711:intron | 45.0% | |
| GATGAACCATTATTGGCCGT+TGG | + | chr3.3:76296647-76296666 | MS.gene06711:intron | 45.0% | |
| GATGGGTGTTAGCTAGCATA+TGG | + | chr3.3:76299013-76299032 | MS.gene06711:intron | 45.0% | |
| GCCAGAAAGGATCTATAACG+TGG | - | chr3.3:76299102-76299121 | None:intergenic | 45.0% | |
| GCGGAAATCTCAGTTGAGAA+GGG | + | chr3.3:76296085-76296104 | MS.gene06711:intron | 45.0% | |
| GGAAAAGCTATGTCTAGCCA+TGG | - | chr3.3:76299211-76299230 | None:intergenic | 45.0% | |
| GGATAATCTCAGGCTTGAGT+AGG | + | chr3.3:76298528-76298547 | MS.gene06711:intron | 45.0% | |
| GTCCACAATGACCTTAGTTC+TGG | - | chr3.3:76299232-76299251 | None:intergenic | 45.0% | |
| GTTGGCATTACGGTGCTTAA+TGG | + | chr3.3:76298645-76298664 | MS.gene06711:intron | 45.0% | |
| TCAGATAGGATTCCAATCCC+AGG | + | chr3.3:76297643-76297662 | MS.gene06711:intron | 45.0% | |
| TCGCAAACGACGGAAAATAG+CGG | - | chr3.3:76298456-76298475 | None:intergenic | 45.0% | |
| TCGTTTGCGATCGACAACAT+TGG | + | chr3.3:76298466-76298485 | MS.gene06711:intron | 45.0% | |
| TCTCAGTTCTGTGCAATGTC+GGG | + | chr3.3:76296267-76296286 | MS.gene06711:intron | 45.0% | |
| ! | ATTATGGGCTAACCGCTGAA+TGG | + | chr3.3:76298986-76299005 | MS.gene06711:intron | 45.0% |
| ! | GATCCTTTCTGGCATATGCT+TGG | + | chr3.3:76299109-76299128 | MS.gene06711:intron | 45.0% |
| ! | GCTTTAGTTCCAACTGCTTC+TGG | + | chr3.3:76296540-76296559 | MS.gene06711:CDS | 45.0% |
| !! | GCTGGTGTCATCGATTTCAA+TGG | + | chr3.3:76299175-76299194 | MS.gene06711:CDS | 45.0% |
| !! | GTGTCATCGATTTCAATGGC+AGG | + | chr3.3:76299179-76299198 | MS.gene06711:CDS | 45.0% |
| !!! | AAGCGCCATTTTTTGCGATG+TGG | - | chr3.3:76298743-76298762 | None:intergenic | 45.0% |
| AACCGCTGAATGGCACAGAT+GGG | + | chr3.3:76298996-76299015 | MS.gene06711:intron | 50.0% | |
| AACTGTGCTATACCGCTGCT+AGG | + | chr3.3:76298782-76298801 | MS.gene06711:intron | 50.0% | |
| ACTGTGCTATACCGCTGCTA+GGG | + | chr3.3:76298783-76298802 | MS.gene06711:intron | 50.0% | |
| CAATAGAGAACTAGCTGCCG+GGG | + | chr3.3:76296836-76296855 | MS.gene06711:intron | 50.0% | |
| CAATCTTGATGTGGCTGCTC+AGG | + | chr3.3:76298284-76298303 | MS.gene06711:intron | 50.0% | |
| CAGAAAGGGATTTGGATCCC+CGG | - | chr3.3:76296856-76296875 | None:intergenic | 50.0% | |
| CGCGGAAATCTCAGTTGAGA+AGG | + | chr3.3:76296084-76296103 | MS.gene06711:intron | 50.0% | |
| CGGCCAATAATGGTTCATCG+GGG | - | chr3.3:76296646-76296665 | None:intergenic | 50.0% | |
| GATGATCTCATGCCTCTTGG+TGG | + | chr3.3:76296057-76296076 | MS.gene06711:CDS | 50.0% | |
| GCAATAGAGAACTAGCTGCC+GGG | + | chr3.3:76296835-76296854 | MS.gene06711:intron | 50.0% | |
| GCTGGGATTGAACTGAATGG+AGG | - | chr3.3:76297894-76297913 | None:intergenic | 50.0% | |
| GGCCAATAATGGTTCATCGG+GGG | - | chr3.3:76296645-76296664 | None:intergenic | 50.0% | |
| GGGATTGAACTGAATGGAGG+TGG | - | chr3.3:76297891-76297910 | None:intergenic | 50.0% | |
| GGTAACCAAATCACGTGGCT+GGG | - | chr3.3:76297911-76297930 | None:intergenic | 50.0% | |
| GTCATGGAAGGCCTAATCAG+TGG | - | chr3.3:76299397-76299416 | None:intergenic | 50.0% | |
| GTGGCTGGGATTGAACTGAA+TGG | - | chr3.3:76297897-76297916 | None:intergenic | 50.0% | |
| GTTGTCTCGGTTGTCATGGA+AGG | - | chr3.3:76299409-76299428 | None:intergenic | 50.0% | |
| TAACCGCTGAATGGCACAGA+TGG | + | chr3.3:76298995-76299014 | MS.gene06711:intron | 50.0% | |
| TCAATCCCAGCCACGTGATT+TGG | + | chr3.3:76297903-76297922 | MS.gene06711:intron | 50.0% | |
| TGCCCCCGATGAACCATTAT+TGG | + | chr3.3:76296640-76296659 | MS.gene06711:intron | 50.0% | |
| TGGTAACCAAATCACGTGGC+TGG | - | chr3.3:76297912-76297931 | None:intergenic | 50.0% | |
| !! | GGGGGCATCATTAGAGAACT+TGG | - | chr3.3:76296627-76296646 | None:intergenic | 50.0% |
| !! | GTCACAAACTTGGTGCAGCA+GGG | + | chr3.3:76296809-76296828 | MS.gene06711:intron | 50.0% |
| !! | TCACAAACTTGGTGCAGCAG+GGG | + | chr3.3:76296810-76296829 | MS.gene06711:intron | 50.0% |
| AAGAGGATGGTGCTTCAGCG+GGG | - | chr3.3:76296123-76296142 | None:intergenic | 55.0% | |
| AGAGGGTGAGACGAAGAGGA+TGG | - | chr3.3:76296136-76296155 | None:intergenic | 55.0% | |
| CATGACATGACAGCCACGAG+AGG | - | chr3.3:76297042-76297061 | None:intergenic | 55.0% | |
| CGAAGAGGATGGTGCTTCAG+CGG | - | chr3.3:76296125-76296144 | None:intergenic | 55.0% | |
| GAAGAGGATGGTGCTTCAGC+GGG | - | chr3.3:76296124-76296143 | None:intergenic | 55.0% | |
| TCAATGGCAGGGCAAAGCCA+TGG | + | chr3.3:76299191-76299210 | MS.gene06711:CDS | 55.0% | |
| TCCTCTTCGTCTCACCCTCT+CGG | + | chr3.3:76296136-76296155 | MS.gene06711:intron | 55.0% | |
| ! | CACCCATCTGTGCCATTCAG+CGG | - | chr3.3:76299001-76299020 | None:intergenic | 55.0% |
| !! | GGTCACAAACTTGGTGCAGC+AGG | + | chr3.3:76296808-76296827 | MS.gene06711:intron | 55.0% |
| ACCGAGAGGGTGAGACGAAG+AGG | - | chr3.3:76296140-76296159 | None:intergenic | 60.0% | |
| AGAGGATGGTGCTTCAGCGG+GGG | - | chr3.3:76296122-76296141 | None:intergenic | 60.0% | |
| TTTCCGCGCGAACCACCAAG+AGG | - | chr3.3:76296072-76296091 | None:intergenic | 60.0% | |
| ! | ATGCCTCTTGGTGGTTCGCG+CGG | + | chr3.3:76296066-76296085 | MS.gene06711:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 76296015 | 76299462 | 76296015 | ID=MS.gene06711 |
| chr3.3 | mRNA | 76296015 | 76299462 | 76296015 | ID=MS.gene06711.t1;Parent=MS.gene06711 |
| chr3.3 | exon | 76296015 | 76296096 | 76296015 | ID=MS.gene06711.t1.exon1;Parent=MS.gene06711.t1 |
| chr3.3 | CDS | 76296015 | 76296096 | 76296015 | ID=cds.MS.gene06711.t1;Parent=MS.gene06711.t1 |
| chr3.3 | exon | 76296273 | 76296330 | 76296273 | ID=MS.gene06711.t1.exon2;Parent=MS.gene06711.t1 |
| chr3.3 | CDS | 76296273 | 76296330 | 76296273 | ID=cds.MS.gene06711.t1;Parent=MS.gene06711.t1 |
| chr3.3 | exon | 76296446 | 76296561 | 76296446 | ID=MS.gene06711.t1.exon3;Parent=MS.gene06711.t1 |
| chr3.3 | CDS | 76296446 | 76296561 | 76296446 | ID=cds.MS.gene06711.t1;Parent=MS.gene06711.t1 |
| chr3.3 | exon | 76299110 | 76299239 | 76299110 | ID=MS.gene06711.t1.exon4;Parent=MS.gene06711.t1 |
| chr3.3 | CDS | 76299110 | 76299239 | 76299110 | ID=cds.MS.gene06711.t1;Parent=MS.gene06711.t1 |
| chr3.3 | exon | 76299345 | 76299462 | 76299345 | ID=MS.gene06711.t1.exon5;Parent=MS.gene06711.t1 |
| chr3.3 | CDS | 76299345 | 76299462 | 76299345 | ID=cds.MS.gene06711.t1;Parent=MS.gene06711.t1 |
| Gene Sequence |
| Protein sequence |
