Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067136.t1 | QCE16208.1 | 53 | 270 | 95 | 4 | 8 | 277 | 20 | 257 | 1.10E-57 | 233.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067136.t1 | Q9FUY2 | 32.6 | 463 | 95 | 10 | 8 | 299 | 20 | 436 | 6.7e-40 | 166.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067136.t1 | A0A4D6NS75 | 53.0 | 270 | 95 | 4 | 8 | 277 | 20 | 257 | 7.9e-58 | 233.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene067136.t1 | TR | LUG |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067136.t1 | MTR_3g107910 | 55.959 | 193 | 57 | 4 | 90 | 271 | 203 | 378 | 1.16e-47 | 171 |
| MS.gene067136.t1 | MTR_3g107910 | 74.324 | 74 | 2 | 1 | 8 | 81 | 20 | 76 | 2.26e-26 | 109 |
| MS.gene067136.t1 | MTR_3g107910 | 54.922 | 193 | 52 | 5 | 90 | 271 | 203 | 371 | 9.16e-46 | 166 |
| MS.gene067136.t1 | MTR_3g107910 | 74.324 | 74 | 2 | 1 | 8 | 81 | 20 | 76 | 2.09e-26 | 109 |
| MS.gene067136.t1 | MTR_1g011610 | 45.050 | 202 | 67 | 7 | 90 | 277 | 214 | 385 | 4.66e-33 | 129 |
| MS.gene067136.t1 | MTR_1g011610 | 74.324 | 74 | 2 | 1 | 8 | 81 | 20 | 76 | 2.47e-26 | 109 |
| MS.gene067136.t1 | MTR_1g011610 | 45.631 | 206 | 60 | 8 | 90 | 277 | 214 | 385 | 5.10e-33 | 129 |
| MS.gene067136.t1 | MTR_1g011610 | 74.324 | 74 | 2 | 1 | 8 | 81 | 20 | 76 | 2.83e-26 | 109 |
| MS.gene067136.t1 | MTR_7g058460 | 62.162 | 74 | 11 | 1 | 8 | 81 | 26 | 82 | 5.92e-21 | 94.0 |
| MS.gene067136.t1 | MTR_7g058440 | 62.162 | 74 | 11 | 1 | 8 | 81 | 26 | 82 | 6.59e-21 | 93.6 |
| MS.gene067136.t1 | MTR_1g050340 | 58.108 | 74 | 14 | 1 | 8 | 81 | 20 | 76 | 4.29e-19 | 88.2 |
| MS.gene067136.t1 | MTR_1g050340 | 58.108 | 74 | 14 | 1 | 8 | 81 | 20 | 76 | 4.37e-19 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067136.t1 | AT4G32551 | 42.152 | 223 | 88 | 7 | 90 | 299 | 242 | 436 | 8.47e-35 | 134 |
| MS.gene067136.t1 | AT4G32551 | 72.973 | 74 | 3 | 1 | 8 | 81 | 20 | 76 | 2.81e-26 | 109 |
| MS.gene067136.t1 | AT4G32551 | 40.000 | 250 | 93 | 9 | 90 | 299 | 242 | 474 | 6.50e-33 | 129 |
| MS.gene067136.t1 | AT4G32551 | 72.973 | 74 | 3 | 1 | 8 | 81 | 20 | 76 | 3.12e-26 | 109 |
| MS.gene067136.t1 | AT2G32700 | 35.545 | 211 | 72 | 8 | 8 | 171 | 20 | 213 | 7.98e-21 | 93.6 |
| MS.gene067136.t1 | AT2G32700 | 35.545 | 211 | 72 | 8 | 8 | 171 | 20 | 213 | 8.30e-21 | 93.6 |
| MS.gene067136.t1 | AT2G32700 | 35.545 | 211 | 72 | 8 | 8 | 171 | 20 | 213 | 8.30e-21 | 93.6 |
| MS.gene067136.t1 | AT2G32700 | 35.545 | 211 | 72 | 8 | 8 | 171 | 20 | 213 | 8.30e-21 | 93.6 |
| MS.gene067136.t1 | AT2G32700 | 35.545 | 211 | 72 | 8 | 8 | 171 | 20 | 213 | 8.30e-21 | 93.6 |
| MS.gene067136.t1 | AT2G32700 | 35.545 | 211 | 72 | 8 | 8 | 171 | 20 | 213 | 8.30e-21 | 93.6 |
| MS.gene067136.t1 | AT2G32700 | 35.545 | 211 | 72 | 8 | 8 | 171 | 20 | 213 | 1.03e-20 | 93.2 |
Find 81 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACCAAATTTCTTGATTTC+AGG | 0.166774 | 3.4:+93841688 | MS.gene067136:intron |
| CAAATTGTTGTTCCTTGATT+TGG | 0.191682 | 3.4:-93842065 | None:intergenic |
| TTGCCTGAAATCAAGAAATT+TGG | 0.196199 | 3.4:-93841691 | None:intergenic |
| TTCAATATTGAGGCATGATT+TGG | 0.222066 | 3.4:-93841405 | None:intergenic |
| TATGCAAATCATGAATCTTT+TGG | 0.257732 | 3.4:-93842647 | None:intergenic |
| CTTCTGAATAATAGGAATAT+TGG | 0.288773 | 3.4:+93842411 | MS.gene067136:CDS |
| GCAGCTGGTGGTCAGCCTTC+AGG | 0.296030 | 3.4:+93841435 | MS.gene067136:CDS |
| TGTTATCTCCACGGGGAAAA+AGG | 0.298244 | 3.4:-93842515 | None:intergenic |
| TGAGAATGCTTCTGAATAAT+AGG | 0.303232 | 3.4:+93842403 | MS.gene067136:CDS |
| GCTGAGGAGCCCTGCATATA+AGG | 0.305306 | 3.4:-93842280 | None:intergenic |
| TAGGAATATTGGCCTAAATA+AGG | 0.314773 | 3.4:+93842422 | MS.gene067136:CDS |
| TGAAAGGCCCATCCTTATTT+AGG | 0.316785 | 3.4:-93842434 | None:intergenic |
| TCCTTCAGGACCCGCAGCTC+TGG | 0.334645 | 3.4:-93841906 | None:intergenic |
| CATCCATGATTACCTTGTTA+AGG | 0.355984 | 3.4:+93840159 | MS.gene067136:CDS |
| AACAACAATTTGACTTTGAA+AGG | 0.413556 | 3.4:+93842076 | MS.gene067136:CDS |
| ATTCCTAACAATGATCCTTC+AGG | 0.421126 | 3.4:-93841920 | None:intergenic |
| GCAGCAAAAGCCTTATATGC+AGG | 0.436516 | 3.4:+93842270 | MS.gene067136:CDS |
| CACCTCCGAGTGCTTCTCAT+TGG | 0.442657 | 3.4:-93840453 | None:intergenic |
| TCAATATTGAGGCATGATTT+GGG | 0.442975 | 3.4:-93841404 | None:intergenic |
| TGAGAACATGGGTCAGCTCT+TGG | 0.447717 | 3.4:+93841380 | MS.gene067136:CDS |
| AGCATATCTGTTATCTCCAC+GGG | 0.450551 | 3.4:-93842523 | None:intergenic |
| GGTCCTGAAGGATCATTGTT+AGG | 0.452925 | 3.4:+93841917 | MS.gene067136:CDS |
| CCTCCTTAACAAGGTAATCA+TGG | 0.454468 | 3.4:-93840162 | None:intergenic |
| GATCATTGTTAGGAATTCTC+TGG | 0.456093 | 3.4:+93841927 | MS.gene067136:CDS |
| TGGATCACTCTTCATGGCGG+TGG | 0.461259 | 3.4:+93842487 | MS.gene067136:CDS |
| CTGCCAGTGAAGAAAGTAGA+AGG | 0.462904 | 3.4:+93842379 | MS.gene067136:CDS |
| TTGTGCCAGGATCCAAATCA+AGG | 0.465913 | 3.4:+93842053 | MS.gene067136:intron |
| CAGCCTTCTACTTTCTTCAC+TGG | 0.466524 | 3.4:-93842382 | None:intergenic |
| GAATGTTGGATCACTCTTCA+TGG | 0.466858 | 3.4:+93842481 | MS.gene067136:CDS |
| GCAGCTCTGGGATTTAAAAC+CGG | 0.474188 | 3.4:-93841893 | None:intergenic |
| CTACTTTCTTCACTGGCAGA+TGG | 0.477409 | 3.4:-93842375 | None:intergenic |
| GGATGGGCCTTTCAAATCCC+TGG | 0.477761 | 3.4:+93842443 | MS.gene067136:CDS |
| CCTTCAGGACCCGCAGCTCT+GGG | 0.479942 | 3.4:-93841905 | None:intergenic |
| GCTCGTAGTCAGCAACTACC+AGG | 0.480624 | 3.4:+93841756 | MS.gene067136:CDS |
| ATTGCAGCTATTGATGCTCC+TGG | 0.482548 | 3.4:+93840377 | MS.gene067136:intron |
| GGTTTGGAGCAACTTCGCTC+TGG | 0.483401 | 3.4:+93842238 | MS.gene067136:CDS |
| ACAACAATTTGACTTTGAAA+GGG | 0.488525 | 3.4:+93842077 | MS.gene067136:CDS |
| CATAAAGAGTGAGATAAATC+CGG | 0.499438 | 3.4:+93841874 | MS.gene067136:CDS |
| GGATCACTCTTCATGGCGGT+GGG | 0.500300 | 3.4:+93842488 | MS.gene067136:CDS |
| TATGCTGTACAGCAAAGATT+TGG | 0.504149 | 3.4:+93841357 | MS.gene067136:intron |
| GCAAAGATTTGGTGAGAACA+TGG | 0.513679 | 3.4:+93841368 | MS.gene067136:intron |
| CTTAACAAGGTAATCATGGA+TGG | 0.518299 | 3.4:-93840158 | None:intergenic |
| AATATTGGCCTAAATAAGGA+TGG | 0.521018 | 3.4:+93842426 | MS.gene067136:CDS |
| CATGATTACCTTGTTAAGGA+GGG | 0.529826 | 3.4:+93840163 | MS.gene067136:CDS |
| CCATGATTACCTTGTTAAGG+AGG | 0.538730 | 3.4:+93840162 | MS.gene067136:CDS |
| ATATTGAAGTCAGCTGCAGC+TGG | 0.539698 | 3.4:+93841420 | MS.gene067136:CDS |
| CCCAGAGCTGCGGGTCCTGA+AGG | 0.540779 | 3.4:+93841905 | MS.gene067136:CDS |
| CTATGGGGACAGAGGTGTAC+CGG | 0.542593 | 3.4:-93841786 | None:intergenic |
| CAATGAGAAGCACTCGGAGG+TGG | 0.544235 | 3.4:+93840454 | MS.gene067136:CDS |
| GATAACAGATATGCTAATGA+AGG | 0.544948 | 3.4:+93842531 | MS.gene067136:CDS |
| GATGGGCCTTTCAAATCCCT+GGG | 0.545332 | 3.4:+93842444 | MS.gene067136:CDS |
| TGCAGCTGACTTCAATATTG+AGG | 0.547077 | 3.4:-93841415 | None:intergenic |
| GTGGCTGCAATCATATATAG+AGG | 0.553031 | 3.4:+93840473 | MS.gene067136:CDS |
| TTTCAAATCCCTCCTTAACA+AGG | 0.564288 | 3.4:-93840171 | None:intergenic |
| ACAATTTGACTTTGAAAGGG+TGG | 0.565454 | 3.4:+93842080 | MS.gene067136:CDS |
| AAAGTATCATCTGACCCTGT+TGG | 0.567966 | 3.4:+93840224 | MS.gene067136:CDS |
| CAGCAAAAGCCTTATATGCA+GGG | 0.575186 | 3.4:+93842271 | MS.gene067136:CDS |
| TCACATTTGTAGTGATGAAA+CGG | 0.576619 | 3.4:-93842302 | None:intergenic |
| TAGCATATCTGTTATCTCCA+CGG | 0.577958 | 3.4:-93842524 | None:intergenic |
| AAATGATCACGTACTGTGAG+TGG | 0.589381 | 3.4:-93842103 | None:intergenic |
| GGTGACATGTTATCGAATGT+TGG | 0.590892 | 3.4:+93842467 | MS.gene067136:CDS |
| CACTCAAACAGAAAACCTCC+AGG | 0.595072 | 3.4:-93840395 | None:intergenic |
| TGACTACGAGCTTGAACTTG+TGG | 0.613035 | 3.4:-93841744 | None:intergenic |
| TTGAAGTCAGCTGCAGCTGG+TGG | 0.619431 | 3.4:+93841423 | MS.gene067136:CDS |
| TTGTAGTGATGAAACGGCTG+AGG | 0.620896 | 3.4:-93842296 | None:intergenic |
| GCAGCTATTGATGCTCCTGG+AGG | 0.625054 | 3.4:+93840380 | MS.gene067136:intron |
| ATATTGGCCTAAATAAGGAT+GGG | 0.631992 | 3.4:+93842427 | MS.gene067136:CDS |
| ATAAGCTGTTGCTGATGCTG+TGG | 0.633531 | 3.4:-93842327 | None:intergenic |
| CAAAGATTTGGTGAGAACAT+GGG | 0.639604 | 3.4:+93841369 | MS.gene067136:CDS |
| CAAGATAACTATGGGGACAG+AGG | 0.642853 | 3.4:-93841794 | None:intergenic |
| AGGTGTACCGGTGTAGACCC+TGG | 0.655843 | 3.4:-93841774 | None:intergenic |
| GCAACTACCAGGGTCTACAC+CGG | 0.673262 | 3.4:+93841767 | MS.gene067136:CDS |
| AAGGACCAATGAGAAGCACT+CGG | 0.676097 | 3.4:+93840448 | MS.gene067136:CDS |
| TTTGAGGAATCTTACCAACA+GGG | 0.679460 | 3.4:-93840238 | None:intergenic |
| CTCGTAGTCAGCAACTACCA+GGG | 0.685612 | 3.4:+93841757 | MS.gene067136:CDS |
| GACCAATGAGAAGCACTCGG+AGG | 0.730786 | 3.4:+93840451 | MS.gene067136:CDS |
| ATGGGCCTTTCAAATCCCTG+GGG | 0.730948 | 3.4:+93842445 | MS.gene067136:CDS |
| TGTTGGATCACTCTTCATGG+CGG | 0.737428 | 3.4:+93842484 | MS.gene067136:CDS |
| TGGGCCTTTCAAATCCCTGG+GGG | 0.738003 | 3.4:+93842446 | MS.gene067136:CDS |
| GATAGCAAACTAACCCACGA+AGG | 0.748997 | 3.4:-93840637 | None:intergenic |
| GCATATCTGTTATCTCCACG+GGG | 0.786796 | 3.4:-93842522 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATAAAATAAAGATAAAA+AGG | - | chr3.4:93842581-93842600 | None:intergenic | 10.0% |
| !!! | ATTTTTCCATAAAAGATTTA+TGG | + | chr3.4:93841951-93841970 | MS.gene067136:intron | 15.0% |
| !!! | GTTAAACAATTTTATTCTAT+AGG | + | chr3.4:93842611-93842630 | MS.gene067136:intron | 15.0% |
| !!! | TTATTATCGCTTTTAATTTA+TGG | + | chr3.4:93840868-93840887 | MS.gene067136:intron | 15.0% |
| !!! | TTTTTCCATAAAAGATTTAT+GGG | + | chr3.4:93841952-93841971 | MS.gene067136:intron | 15.0% |
| ! | AAAGGAAAAACTGGATTTAA+AGG | + | chr3.4:93840275-93840294 | MS.gene067136:CDS | 25.0% |
| ! | AACAATGTTCATCTTATAGT+AGG | - | chr3.4:93841304-93841323 | None:intergenic | 25.0% |
| ! | AAGCAACTAAATCACTAAAA+TGG | - | chr3.4:93840323-93840342 | None:intergenic | 25.0% |
| ! | CAAAAAAAAGCAATGAACAT+AGG | - | chr3.4:93841336-93841355 | None:intergenic | 25.0% |
| ! | CTTCTGAATAATAGGAATAT+TGG | + | chr3.4:93842411-93842430 | MS.gene067136:CDS | 25.0% |
| ! | TACACTGTTTACTACAATTA+CGG | - | chr3.4:93842022-93842041 | None:intergenic | 25.0% |
| ! | TAGTACCATCAATTTAACAA+CGG | - | chr3.4:93840805-93840824 | None:intergenic | 25.0% |
| ! | TAGTTGAAAGAAAACTTTCA+TGG | + | chr3.4:93840497-93840516 | MS.gene067136:intron | 25.0% |
| ! | TTTCATTGTAACATTAGTTG+TGG | + | chr3.4:93841975-93841994 | MS.gene067136:intron | 25.0% |
| !! | AACAACAATTTGACTTTGAA+AGG | + | chr3.4:93842076-93842095 | MS.gene067136:CDS | 25.0% |
| !! | ACAACAATTTGACTTTGAAA+GGG | + | chr3.4:93842077-93842096 | MS.gene067136:CDS | 25.0% |
| !! | CTTTATATCTTTAGTGCTTT+TGG | + | chr3.4:93841540-93841559 | MS.gene067136:intron | 25.0% |
| !! | GTTTTTCACATGTTTTGTAA+AGG | + | chr3.4:93840613-93840632 | MS.gene067136:intron | 25.0% |
| !! | TGAAACCCATAAATCTTTTA+TGG | - | chr3.4:93841960-93841979 | None:intergenic | 25.0% |
| !!! | ATCATTAATTTTTCGAAAGC+AGG | - | chr3.4:93841577-93841596 | None:intergenic | 25.0% |
| !!! | CTATGTTCATTGCTTTTTTT+TGG | + | chr3.4:93841334-93841353 | MS.gene067136:intron | 25.0% |
| !!! | GTAATGAAAGTATGTTTTGA+AGG | - | chr3.4:93842194-93842213 | None:intergenic | 25.0% |
| AACAACGGTAACAAAGATAA+TGG | - | chr3.4:93840790-93840809 | None:intergenic | 30.0% | |
| AAGCAGCTAATATGGAATAT+AGG | - | chr3.4:93841826-93841845 | None:intergenic | 30.0% | |
| AATAGCAACAAAGATGTATG+AGG | + | chr3.4:93841203-93841222 | MS.gene067136:intron | 30.0% | |
| ACACTGTTTACTACAATTAC+GGG | - | chr3.4:93842021-93842040 | None:intergenic | 30.0% | |
| ACCCTAATAAAGGATAAGAA+AGG | - | chr3.4:93842221-93842240 | None:intergenic | 30.0% | |
| AGCCTTTCTTATCCTTTATT+AGG | + | chr3.4:93842216-93842235 | MS.gene067136:intron | 30.0% | |
| AGGAAGTAACAAGATAACTA+TGG | - | chr3.4:93841806-93841825 | None:intergenic | 30.0% | |
| ATGCTATGCTAGTTAAAAGA+AGG | + | chr3.4:93840530-93840549 | MS.gene067136:intron | 30.0% | |
| ATGTATGAGGAAAGGTTAAA+AGG | + | chr3.4:93841216-93841235 | MS.gene067136:intron | 30.0% | |
| CATAAAGAGTGAGATAAATC+CGG | + | chr3.4:93841874-93841893 | MS.gene067136:CDS | 30.0% | |
| GAAAGTAGAATATATCTGCA+GGG | - | chr3.4:93842147-93842166 | None:intergenic | 30.0% | |
| GAAGTAACAAGATAACTATG+GGG | - | chr3.4:93841804-93841823 | None:intergenic | 30.0% | |
| GATAACAGATATGCTAATGA+AGG | + | chr3.4:93842531-93842550 | MS.gene067136:CDS | 30.0% | |
| GCCTTTCTTATCCTTTATTA+GGG | + | chr3.4:93842217-93842236 | MS.gene067136:intron | 30.0% | |
| GGAAGTAACAAGATAACTAT+GGG | - | chr3.4:93841805-93841824 | None:intergenic | 30.0% | |
| TAACAAAAAAACTCACCTGA+AGG | - | chr3.4:93841453-93841472 | None:intergenic | 30.0% | |
| TATGCAGACTCAATTAATCA+AGG | + | chr3.4:93840905-93840924 | MS.gene067136:intron | 30.0% | |
| TCAATATTGAGGCATGATTT+GGG | - | chr3.4:93841407-93841426 | None:intergenic | 30.0% | |
| TCACATTTGTAGTGATGAAA+CGG | - | chr3.4:93842305-93842324 | None:intergenic | 30.0% | |
| TCTTATCCTTTATTAGGGTT+TGG | + | chr3.4:93842222-93842241 | MS.gene067136:intron | 30.0% | |
| TGAAAGTAGAATATATCTGC+AGG | - | chr3.4:93842148-93842167 | None:intergenic | 30.0% | |
| TGAGAATGCTTCTGAATAAT+AGG | + | chr3.4:93842403-93842422 | MS.gene067136:CDS | 30.0% | |
| TGATTAATTGAGTCTGCATA+CGG | - | chr3.4:93840905-93840924 | None:intergenic | 30.0% | |
| TGTTACCGTTGTTAAATTGA+TGG | + | chr3.4:93840797-93840816 | MS.gene067136:intron | 30.0% | |
| TTCAATATTGAGGCATGATT+TGG | - | chr3.4:93841408-93841427 | None:intergenic | 30.0% | |
| TTGCCTGAAATCAAGAAATT+TGG | - | chr3.4:93841694-93841713 | None:intergenic | 30.0% | |
| ! | AATATTGGCCTAAATAAGGA+TGG | + | chr3.4:93842426-93842445 | MS.gene067136:CDS | 30.0% |
| ! | ATATTGGCCTAAATAAGGAT+GGG | + | chr3.4:93842427-93842446 | MS.gene067136:CDS | 30.0% |
| ! | CAAAACTGTGCTTTTATGAA+AGG | + | chr3.4:93840257-93840276 | MS.gene067136:CDS | 30.0% |
| ! | CAAATTGTTGTTCCTTGATT+TGG | - | chr3.4:93842068-93842087 | None:intergenic | 30.0% |
| ! | GCTTTTATGAAAGGAAAAAC+TGG | + | chr3.4:93840266-93840285 | MS.gene067136:CDS | 30.0% |
| ! | GTTGTTAAATTGATGGTACT+AGG | + | chr3.4:93840804-93840823 | MS.gene067136:intron | 30.0% |
| ! | TAGGAATATTGGCCTAAATA+AGG | + | chr3.4:93842422-93842441 | MS.gene067136:CDS | 30.0% |
| ! | TTTGCTATCAACAGAATAGT+TGG | + | chr3.4:93840651-93840670 | MS.gene067136:intron | 30.0% |
| !! | TTCATAAAAGCACAGTTTTG+AGG | - | chr3.4:93840257-93840276 | None:intergenic | 30.0% |
| !!! | ATTGTTTTAATGAACTCTGC+GGG | + | chr3.4:93840684-93840703 | MS.gene067136:intron | 30.0% |
| !!! | GATTGTTTTAATGAACTCTG+CGG | + | chr3.4:93840683-93840702 | MS.gene067136:intron | 30.0% |
| !!! | TATTTCACTTTTTTTGTGCC+AGG | + | chr3.4:93842040-93842059 | MS.gene067136:intron | 30.0% |
| ACAACCAGCAAAATAGAGAT+AGG | + | chr3.4:93841119-93841138 | MS.gene067136:intron | 35.0% | |
| AGACTCAATTAATCAAGGCA+AGG | + | chr3.4:93840910-93840929 | MS.gene067136:intron | 35.0% | |
| ATGAAGGTAGAATGATGTTC+TGG | + | chr3.4:93841274-93841293 | MS.gene067136:intron | 35.0% | |
| ATTCCTAACAATGATCCTTC+AGG | - | chr3.4:93841923-93841942 | None:intergenic | 35.0% | |
| CAACAAAGATGTATGAGGAA+AGG | + | chr3.4:93841208-93841227 | MS.gene067136:intron | 35.0% | |
| CAACCAGCAAAATAGAGATA+GGG | + | chr3.4:93841120-93841139 | MS.gene067136:intron | 35.0% | |
| CATCCATGATTACCTTGTTA+AGG | + | chr3.4:93840159-93840178 | MS.gene067136:CDS | 35.0% | |
| CATGATTACCTTGTTAAGGA+GGG | + | chr3.4:93840163-93840182 | MS.gene067136:CDS | 35.0% | |
| CTTAACAAGGTAATCATGGA+TGG | - | chr3.4:93840161-93840180 | None:intergenic | 35.0% | |
| CTTTATGTCCTGATTCCAAA+TGG | - | chr3.4:93841861-93841880 | None:intergenic | 35.0% | |
| GACTCAATTAATCAAGGCAA+GGG | + | chr3.4:93840911-93840930 | MS.gene067136:intron | 35.0% | |
| GATCATTGTTAGGAATTCTC+TGG | + | chr3.4:93841927-93841946 | MS.gene067136:CDS | 35.0% | |
| GATTAATTGAGTCTGCATAC+GGG | - | chr3.4:93840904-93840923 | None:intergenic | 35.0% | |
| GCACCAAATTTCTTGATTTC+AGG | + | chr3.4:93841688-93841707 | MS.gene067136:intron | 35.0% | |
| TAGCATATCTGTTATCTCCA+CGG | - | chr3.4:93842527-93842546 | None:intergenic | 35.0% | |
| TATGCTGTACAGCAAAGATT+TGG | + | chr3.4:93841357-93841376 | MS.gene067136:intron | 35.0% | |
| TTTCAAATCCCTCCTTAACA+AGG | - | chr3.4:93840174-93840193 | None:intergenic | 35.0% | |
| TTTGAGGAATCTTACCAACA+GGG | - | chr3.4:93840241-93840260 | None:intergenic | 35.0% | |
| ! | ACAATTTGACTTTGAAAGGG+TGG | + | chr3.4:93842080-93842099 | MS.gene067136:CDS | 35.0% |
| ! | TATCTTTAGTGCTTTTGGAC+AGG | + | chr3.4:93841545-93841564 | MS.gene067136:intron | 35.0% |
| ! | TCTTAAATGGTAGCGCAAAT+GGG | + | chr3.4:93841149-93841168 | MS.gene067136:intron | 35.0% |
| !! | CAAAGATTTGGTGAGAACAT+GGG | + | chr3.4:93841369-93841388 | MS.gene067136:CDS | 35.0% |
| !! | TCTATTTTGCTGGTTGTTTG+TGG | - | chr3.4:93841116-93841135 | None:intergenic | 35.0% |
| !! | TCTGGGATATTTTCATTGCA+AGG | + | chr3.4:93840429-93840448 | MS.gene067136:CDS | 35.0% |
| !! | TTTTGAGGAATCTTACCAAC+AGG | - | chr3.4:93840242-93840261 | None:intergenic | 35.0% |
| AAATGATCACGTACTGTGAG+TGG | - | chr3.4:93842106-93842125 | None:intergenic | 40.0% | |
| AGCATATCTGTTATCTCCAC+GGG | - | chr3.4:93842526-93842545 | None:intergenic | 40.0% | |
| CCATGATTACCTTGTTAAGG+AGG | + | chr3.4:93840162-93840181 | MS.gene067136:CDS | 40.0% | |
| CCTCCTTAACAAGGTAATCA+TGG | - | chr3.4:93840165-93840184 | None:intergenic | 40.0% | |
| CTGCATTCTCTATATCTGTG+TGG | + | chr3.4:93841650-93841669 | MS.gene067136:intron | 40.0% | |
| GAATGTTGGATCACTCTTCA+TGG | + | chr3.4:93842481-93842500 | MS.gene067136:CDS | 40.0% | |
| GATAGGGCTCATCTCTTAAA+TGG | + | chr3.4:93841136-93841155 | MS.gene067136:intron | 40.0% | |
| GGTGACATGTTATCGAATGT+TGG | + | chr3.4:93842467-93842486 | MS.gene067136:CDS | 40.0% | |
| GTGGCTGCAATCATATATAG+AGG | + | chr3.4:93840473-93840492 | MS.gene067136:CDS | 40.0% | |
| GTTGCTCCAAACCCTAATAA+AGG | - | chr3.4:93842231-93842250 | None:intergenic | 40.0% | |
| TCAGGGAAAAGCAGCTAATA+TGG | - | chr3.4:93841834-93841853 | None:intergenic | 40.0% | |
| TGATTCCAAATGGCAAGTCA+GGG | - | chr3.4:93841851-93841870 | None:intergenic | 40.0% | |
| ! | AAAGTATCATCTGACCCTGT+TGG | + | chr3.4:93840224-93840243 | MS.gene067136:CDS | 40.0% |
| ! | CAGCAAAAGCCTTATATGCA+GGG | + | chr3.4:93842271-93842290 | MS.gene067136:CDS | 40.0% |
| ! | CTCTTAAATGGTAGCGCAAA+TGG | + | chr3.4:93841148-93841167 | MS.gene067136:intron | 40.0% |
| ! | GATTTCAGGCAAGTTTTGCA+TGG | + | chr3.4:93841702-93841721 | MS.gene067136:CDS | 40.0% |
| ! | GTTTTGTAAAGGACCTTCGT+GGG | + | chr3.4:93840624-93840643 | MS.gene067136:intron | 40.0% |
| ! | TGAAAGGCCCATCCTTATTT+AGG | - | chr3.4:93842437-93842456 | None:intergenic | 40.0% |
| ! | TGCAGCTGACTTCAATATTG+AGG | - | chr3.4:93841418-93841437 | None:intergenic | 40.0% |
| ! | TGTTTTGTAAAGGACCTTCG+TGG | + | chr3.4:93840623-93840642 | MS.gene067136:intron | 40.0% |
| ! | TTTGTTGCTATTGCATTCGC+AGG | - | chr3.4:93841195-93841214 | None:intergenic | 40.0% |
| ! | TTTTCTGTTTGAGTGGTGGT+CGG | + | chr3.4:93840403-93840422 | MS.gene067136:CDS | 40.0% |
| !! | GCAAAGATTTGGTGAGAACA+TGG | + | chr3.4:93841368-93841387 | MS.gene067136:intron | 40.0% |
| !! | TTGTTCCTTGATTTGGATCC+TGG | - | chr3.4:93842061-93842080 | None:intergenic | 40.0% |
| ATAAGCTGTTGCTGATGCTG+TGG | - | chr3.4:93842330-93842349 | None:intergenic | 45.0% | |
| ATATTGAAGTCAGCTGCAGC+TGG | + | chr3.4:93841420-93841439 | MS.gene067136:CDS | 45.0% | |
| ATCCAAAGAATCCCTCTGTG+GGG | - | chr3.4:93841245-93841264 | None:intergenic | 45.0% | |
| ATTGCAGCTATTGATGCTCC+TGG | + | chr3.4:93840377-93840396 | MS.gene067136:intron | 45.0% | |
| CAAGATAACTATGGGGACAG+AGG | - | chr3.4:93841797-93841816 | None:intergenic | 45.0% | |
| CACTCAAACAGAAAACCTCC+AGG | - | chr3.4:93840398-93840417 | None:intergenic | 45.0% | |
| CAGCCTTCTACTTTCTTCAC+TGG | - | chr3.4:93842385-93842404 | None:intergenic | 45.0% | |
| CATCCAAAGAATCCCTCTGT+GGG | - | chr3.4:93841246-93841265 | None:intergenic | 45.0% | |
| CTACTTTCTTCACTGGCAGA+TGG | - | chr3.4:93842378-93842397 | None:intergenic | 45.0% | |
| CTGATTCCAAATGGCAAGTC+AGG | - | chr3.4:93841852-93841871 | None:intergenic | 45.0% | |
| CTGCCAGTGAAGAAAGTAGA+AGG | + | chr3.4:93842379-93842398 | MS.gene067136:CDS | 45.0% | |
| GATAGCAAACTAACCCACGA+AGG | - | chr3.4:93840640-93840659 | None:intergenic | 45.0% | |
| GCATATCTGTTATCTCCACG+GGG | - | chr3.4:93842525-93842544 | None:intergenic | 45.0% | |
| GGTCCTGAAGGATCATTGTT+AGG | + | chr3.4:93841917-93841936 | MS.gene067136:CDS | 45.0% | |
| GTTGTTTGTGGTTGTGGTTG+TGG | - | chr3.4:93841104-93841123 | None:intergenic | 45.0% | |
| TCATCCAAAGAATCCCTCTG+TGG | - | chr3.4:93841247-93841266 | None:intergenic | 45.0% | |
| TGACTACGAGCTTGAACTTG+TGG | - | chr3.4:93841747-93841766 | None:intergenic | 45.0% | |
| TGCTTATTTGCGTGTGTGTG+TGG | + | chr3.4:93840338-93840357 | MS.gene067136:intron | 45.0% | |
| TGTTATCTCCACGGGGAAAA+AGG | - | chr3.4:93842518-93842537 | None:intergenic | 45.0% | |
| TGTTGGATCACTCTTCATGG+CGG | + | chr3.4:93842484-93842503 | MS.gene067136:CDS | 45.0% | |
| TTGTAGTGATGAAACGGCTG+AGG | - | chr3.4:93842299-93842318 | None:intergenic | 45.0% | |
| TTGTGCCAGGATCCAAATCA+AGG | + | chr3.4:93842053-93842072 | MS.gene067136:intron | 45.0% | |
| TTTGGATGACGCAGCAATGA+AGG | + | chr3.4:93841258-93841277 | MS.gene067136:intron | 45.0% | |
| ! | AAGTTTTGCATGGCACTGCT+GGG | + | chr3.4:93841712-93841731 | MS.gene067136:CDS | 45.0% |
| ! | CTGACTTGCCATTTGGAATC+AGG | + | chr3.4:93841850-93841869 | MS.gene067136:intron | 45.0% |
| ! | CTGGAGGTTTTCTGTTTGAG+TGG | + | chr3.4:93840396-93840415 | MS.gene067136:CDS | 45.0% |
| ! | GAGCCCTATCTCTATTTTGC+TGG | - | chr3.4:93841126-93841145 | None:intergenic | 45.0% |
| ! | GAGGTTTTCTGTTTGAGTGG+TGG | + | chr3.4:93840399-93840418 | MS.gene067136:CDS | 45.0% |
| ! | GCAGCAAAAGCCTTATATGC+AGG | + | chr3.4:93842270-93842289 | MS.gene067136:CDS | 45.0% |
| ! | TTGCTGGTTGTTTGTGGTTG+TGG | - | chr3.4:93841110-93841129 | None:intergenic | 45.0% |
| !! | AAGGACCAATGAGAAGCACT+CGG | + | chr3.4:93840448-93840467 | MS.gene067136:CDS | 45.0% |
| !! | CTTTTCCCTGACTTGCCATT+TGG | + | chr3.4:93841843-93841862 | MS.gene067136:intron | 45.0% |
| !! | GCAGCTCTGGGATTTAAAAC+CGG | - | chr3.4:93841896-93841915 | None:intergenic | 45.0% |
| !! | GCTCAAGCTTTTCAAGCTGA+GGG | + | chr3.4:93840200-93840219 | MS.gene067136:CDS | 45.0% |
| !! | GTTTTAAATCCCAGAGCTGC+GGG | + | chr3.4:93841896-93841915 | MS.gene067136:CDS | 45.0% |
| !! | TGCTCAAGCTTTTCAAGCTG+AGG | + | chr3.4:93840199-93840218 | MS.gene067136:CDS | 45.0% |
| !! | TGTGTGGTTGATGGCAACAT+GGG | + | chr3.4:93840354-93840373 | MS.gene067136:intron | 45.0% |
| !!! | GGTTTTAAATCCCAGAGCTG+CGG | + | chr3.4:93841895-93841914 | MS.gene067136:CDS | 45.0% |
| !!! | TTATTTTAATAACATTTATT+TGG | + | chr3.4:93841607-93841626 | MS.gene067136:intron | 5.0% |
| ATCTCCACGGGGAAAAAGGA+GGG | - | chr3.4:93842514-93842533 | None:intergenic | 50.0% | |
| ATGGGCCTTTCAAATCCCTG+GGG | + | chr3.4:93842445-93842464 | MS.gene067136:CDS | 50.0% | |
| CTATTGCATTCGCAGGTTGC+CGG | - | chr3.4:93841188-93841207 | None:intergenic | 50.0% | |
| CTCGTAGTCAGCAACTACCA+GGG | + | chr3.4:93841757-93841776 | MS.gene067136:CDS | 50.0% | |
| GATGGGCCTTTCAAATCCCT+GGG | + | chr3.4:93842444-93842463 | MS.gene067136:CDS | 50.0% | |
| TATCTCCACGGGGAAAAAGG+AGG | - | chr3.4:93842515-93842534 | None:intergenic | 50.0% | |
| TATTGCATTCGCAGGTTGCC+GGG | - | chr3.4:93841187-93841206 | None:intergenic | 50.0% | |
| TCCAAAGAATCCCTCTGTGG+GGG | - | chr3.4:93841244-93841263 | None:intergenic | 50.0% | |
| TCGATAACATGTCACCCCCA+GGG | - | chr3.4:93842463-93842482 | None:intergenic | 50.0% | |
| TGAGAACATGGGTCAGCTCT+TGG | + | chr3.4:93841380-93841399 | MS.gene067136:CDS | 50.0% | |
| TTAAAAGGTCCCCCCACAGA+GGG | + | chr3.4:93841231-93841250 | MS.gene067136:intron | 50.0% | |
| TTCGATAACATGTCACCCCC+AGG | - | chr3.4:93842464-93842483 | None:intergenic | 50.0% | |
| TTGCGTGTGTGTGTGGTTGA+TGG | + | chr3.4:93840345-93840364 | MS.gene067136:intron | 50.0% | |
| ! | AGTTTTGCATGGCACTGCTG+GGG | + | chr3.4:93841713-93841732 | MS.gene067136:CDS | 50.0% |
| ! | CAAGTTTTGCATGGCACTGC+TGG | + | chr3.4:93841711-93841730 | MS.gene067136:CDS | 50.0% |
| !! | AATGGGTTAGCTGGAAACCC+CGG | + | chr3.4:93841166-93841185 | MS.gene067136:intron | 50.0% |
| !! | GTGTGTGGTTGATGGCAACA+TGG | + | chr3.4:93840353-93840372 | MS.gene067136:intron | 50.0% |
| !! | TGAGTGGTGGTCGGTTTTCT+GGG | + | chr3.4:93840412-93840431 | MS.gene067136:CDS | 50.0% |
| !! | TTGAGTGGTGGTCGGTTTTC+TGG | + | chr3.4:93840411-93840430 | MS.gene067136:CDS | 50.0% |
| ATTGCATTCGCAGGTTGCCG+GGG | - | chr3.4:93841186-93841205 | None:intergenic | 55.0% | |
| CACCTCCGAGTGCTTCTCAT+TGG | - | chr3.4:93840456-93840475 | None:intergenic | 55.0% | |
| CCAAAGAATCCCTCTGTGGG+GGG | - | chr3.4:93841243-93841262 | None:intergenic | 55.0% | |
| GCAACTACCAGGGTCTACAC+CGG | + | chr3.4:93841767-93841786 | MS.gene067136:CDS | 55.0% | |
| GCAGCTATTGATGCTCCTGG+AGG | + | chr3.4:93840380-93840399 | MS.gene067136:intron | 55.0% | |
| GCTCGTAGTCAGCAACTACC+AGG | + | chr3.4:93841756-93841775 | MS.gene067136:CDS | 55.0% | |
| GCTGAGGAGCCCTGCATATA+AGG | - | chr3.4:93842283-93842302 | None:intergenic | 55.0% | |
| GGATCACTCTTCATGGCGGT+GGG | + | chr3.4:93842488-93842507 | MS.gene067136:CDS | 55.0% | |
| GGATGGGCCTTTCAAATCCC+TGG | + | chr3.4:93842443-93842462 | MS.gene067136:CDS | 55.0% | |
| GTCACCCCCAGGGATTTGAA+AGG | - | chr3.4:93842453-93842472 | None:intergenic | 55.0% | |
| GTTAAAAGGTCCCCCCACAG+AGG | + | chr3.4:93841230-93841249 | MS.gene067136:intron | 55.0% | |
| TGCTGTGACTGCTGAGGTTG+AGG | - | chr3.4:93840969-93840988 | None:intergenic | 55.0% | |
| TGGATCACTCTTCATGGCGG+TGG | + | chr3.4:93842487-93842506 | MS.gene067136:CDS | 55.0% | |
| TGGGCCTTTCAAATCCCTGG+GGG | + | chr3.4:93842446-93842465 | MS.gene067136:CDS | 55.0% | |
| TTGAAGTCAGCTGCAGCTGG+TGG | + | chr3.4:93841423-93841442 | MS.gene067136:CDS | 55.0% | |
| ! | CTATGGGGACAGAGGTGTAC+CGG | - | chr3.4:93841789-93841808 | None:intergenic | 55.0% |
| ! | GGTTTGGAGCAACTTCGCTC+TGG | + | chr3.4:93842238-93842257 | MS.gene067136:CDS | 55.0% |
| ! | GTTTTGCATGGCACTGCTGG+GGG | + | chr3.4:93841714-93841733 | MS.gene067136:CDS | 55.0% |
| ! | TTTTGCATGGCACTGCTGGG+GGG | + | chr3.4:93841715-93841734 | MS.gene067136:CDS | 55.0% |
| !! | CAATGAGAAGCACTCGGAGG+TGG | + | chr3.4:93840454-93840473 | MS.gene067136:CDS | 55.0% |
| !! | GACCAATGAGAAGCACTCGG+AGG | + | chr3.4:93840451-93840470 | MS.gene067136:CDS | 55.0% |
| !! | GGTAGCGCAAATGGGTTAGC+TGG | + | chr3.4:93841157-93841176 | MS.gene067136:intron | 55.0% |
| CCCCCCACAGAGGGATTCTT+TGG | + | chr3.4:93841240-93841259 | MS.gene067136:intron | 60.0% | |
| GGTTGTGGTTGTGGCTGCTG+CGG | - | chr3.4:93841095-93841114 | None:intergenic | 60.0% | |
| TGCGCATGCTGTGACTGCTG+AGG | - | chr3.4:93840975-93840994 | None:intergenic | 60.0% | |
| ! | AGGTGTACCGGTGTAGACCC+TGG | - | chr3.4:93841777-93841796 | None:intergenic | 60.0% |
| CCTTCAGGACCCGCAGCTCT+GGG | - | chr3.4:93841908-93841927 | None:intergenic | 65.0% | |
| GCAGCTGGTGGTCAGCCTTC+AGG | + | chr3.4:93841435-93841454 | MS.gene067136:CDS | 65.0% | |
| TCCTTCAGGACCCGCAGCTC+TGG | - | chr3.4:93841909-93841928 | None:intergenic | 65.0% | |
| ! | TGGGCCCTCCTTTTTCCCCG+TGG | + | chr3.4:93842507-93842526 | MS.gene067136:CDS | 65.0% |
| CCCAGAGCTGCGGGTCCTGA+AGG | + | chr3.4:93841905-93841924 | MS.gene067136:CDS | 70.0% | |
| GGCTGCTGCGGCTGCGATTG+TGG | - | chr3.4:93841083-93841102 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 93840152 | 93842661 | 93840152 | ID=MS.gene067136 |
| chr3.4 | mRNA | 93840152 | 93842661 | 93840152 | ID=MS.gene067136.t1;Parent=MS.gene067136 |
| chr3.4 | exon | 93840152 | 93840296 | 93840152 | ID=MS.gene067136.t1.exon1;Parent=MS.gene067136.t1 |
| chr3.4 | CDS | 93840152 | 93840296 | 93840152 | ID=cds.MS.gene067136.t1;Parent=MS.gene067136.t1 |
| chr3.4 | exon | 93840384 | 93840494 | 93840384 | ID=MS.gene067136.t1.exon2;Parent=MS.gene067136.t1 |
| chr3.4 | CDS | 93840384 | 93840494 | 93840384 | ID=cds.MS.gene067136.t1;Parent=MS.gene067136.t1 |
| chr3.4 | exon | 93840635 | 93840645 | 93840635 | ID=MS.gene067136.t1.exon3;Parent=MS.gene067136.t1 |
| chr3.4 | CDS | 93840635 | 93840645 | 93840635 | ID=cds.MS.gene067136.t1;Parent=MS.gene067136.t1 |
| chr3.4 | exon | 93841369 | 93841456 | 93841369 | ID=MS.gene067136.t1.exon4;Parent=MS.gene067136.t1 |
| chr3.4 | CDS | 93841369 | 93841456 | 93841369 | ID=cds.MS.gene067136.t1;Parent=MS.gene067136.t1 |
| chr3.4 | exon | 93841689 | 93841807 | 93841689 | ID=MS.gene067136.t1.exon5;Parent=MS.gene067136.t1 |
| chr3.4 | CDS | 93841689 | 93841807 | 93841689 | ID=cds.MS.gene067136.t1;Parent=MS.gene067136.t1 |
| chr3.4 | exon | 93841872 | 93841948 | 93841872 | ID=MS.gene067136.t1.exon6;Parent=MS.gene067136.t1 |
| chr3.4 | CDS | 93841872 | 93841948 | 93841872 | ID=cds.MS.gene067136.t1;Parent=MS.gene067136.t1 |
| chr3.4 | exon | 93842062 | 93842111 | 93842062 | ID=MS.gene067136.t1.exon7;Parent=MS.gene067136.t1 |
| chr3.4 | CDS | 93842062 | 93842111 | 93842062 | ID=cds.MS.gene067136.t1;Parent=MS.gene067136.t1 |
| chr3.4 | exon | 93842238 | 93842552 | 93842238 | ID=MS.gene067136.t1.exon8;Parent=MS.gene067136.t1 |
| chr3.4 | CDS | 93842238 | 93842552 | 93842238 | ID=cds.MS.gene067136.t1;Parent=MS.gene067136.t1 |
| chr3.4 | exon | 93842633 | 93842661 | 93842633 | ID=MS.gene067136.t1.exon9;Parent=MS.gene067136.t1 |
| chr3.4 | CDS | 93842633 | 93842661 | 93842633 | ID=cds.MS.gene067136.t1;Parent=MS.gene067136.t1 |
| Gene Sequence |
| Protein sequence |
