Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067199.t1 | KEH40808.1 | 62.9 | 525 | 94 | 6 | 407 | 927 | 7 | 434 | 2.90E-114 | 423.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067199.t1 | A0A072VHA4 | 62.9 | 525 | 94 | 6 | 407 | 927 | 7 | 434 | 2.1e-114 | 423.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene067199.t1 | TF | B3 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067199.t1 | MTR_1g035640 | 66.826 | 419 | 113 | 5 | 459 | 866 | 60 | 463 | 7.01e-172 | 508 |
MS.gene067199.t1 | MTR_1g035640 | 55.426 | 258 | 76 | 5 | 1 | 229 | 1 | 248 | 9.65e-79 | 264 |
MS.gene067199.t1 | MTR_1g035640 | 62.195 | 164 | 48 | 3 | 764 | 927 | 285 | 434 | 5.80e-50 | 184 |
MS.gene067199.t1 | MTR_1g035640 | 59.259 | 135 | 54 | 1 | 260 | 394 | 157 | 290 | 2.01e-43 | 165 |
MS.gene067199.t1 | MTR_1g035640 | 37.405 | 131 | 51 | 2 | 366 | 496 | 366 | 465 | 1.21e-11 | 68.6 |
MS.gene067199.t1 | MTR_1g035570 | 59.167 | 240 | 91 | 3 | 265 | 502 | 167 | 401 | 7.80e-84 | 276 |
MS.gene067199.t1 | MTR_1g035570 | 36.768 | 427 | 193 | 12 | 1 | 383 | 1 | 394 | 1.05e-68 | 234 |
MS.gene067199.t1 | MTR_1g035570 | 39.604 | 303 | 136 | 7 | 459 | 743 | 60 | 333 | 3.06e-49 | 180 |
MS.gene067199.t1 | MTR_1g035490 | 52.157 | 255 | 92 | 4 | 264 | 497 | 85 | 330 | 2.87e-75 | 250 |
MS.gene067199.t1 | MTR_1g035490 | 41.624 | 197 | 96 | 6 | 542 | 736 | 52 | 231 | 7.06e-38 | 145 |
MS.gene067199.t1 | MTR_1g035490 | 30.868 | 311 | 137 | 10 | 112 | 382 | 55 | 327 | 2.86e-27 | 114 |
MS.gene067199.t1 | MTR_1g035620 | 46.875 | 256 | 105 | 9 | 264 | 494 | 159 | 408 | 1.20e-54 | 196 |
MS.gene067199.t1 | MTR_1g035620 | 33.478 | 460 | 188 | 17 | 1 | 388 | 1 | 414 | 1.18e-53 | 193 |
MS.gene067199.t1 | MTR_1g035620 | 36.103 | 349 | 167 | 13 | 391 | 731 | 10 | 310 | 3.51e-46 | 171 |
MS.gene067199.t1 | MTR_1g050845 | 37.463 | 339 | 108 | 12 | 1 | 267 | 1 | 307 | 3.77e-42 | 166 |
MS.gene067199.t1 | MTR_1g050845 | 36.857 | 350 | 155 | 12 | 391 | 733 | 10 | 300 | 1.87e-41 | 164 |
MS.gene067199.t1 | MTR_1g050845 | 45.455 | 209 | 88 | 7 | 278 | 462 | 158 | 364 | 2.36e-39 | 157 |
MS.gene067199.t1 | MTR_6g061070 | 35.548 | 301 | 147 | 9 | 240 | 495 | 172 | 470 | 5.89e-40 | 155 |
MS.gene067199.t1 | MTR_6g061070 | 27.632 | 456 | 230 | 17 | 14 | 382 | 27 | 469 | 2.49e-27 | 117 |
MS.gene067199.t1 | MTR_6g061070 | 34.909 | 275 | 129 | 10 | 463 | 704 | 76 | 333 | 2.92e-26 | 114 |
MS.gene067199.t1 | MTR_1g035650 | 40.278 | 216 | 81 | 5 | 1 | 181 | 1 | 203 | 5.74e-37 | 138 |
MS.gene067199.t1 | MTR_1g035650 | 30.263 | 228 | 120 | 7 | 391 | 613 | 10 | 203 | 1.58e-13 | 70.9 |
MS.gene067199.t1 | MTR_5g044670 | 26.073 | 303 | 189 | 10 | 421 | 706 | 32 | 316 | 2.06e-20 | 94.0 |
MS.gene067199.t1 | MTR_5g044670 | 28.030 | 264 | 123 | 7 | 14 | 228 | 25 | 270 | 3.66e-20 | 93.2 |
MS.gene067199.t1 | MTR_5g044670 | 34.395 | 157 | 84 | 4 | 250 | 390 | 156 | 309 | 8.18e-16 | 80.1 |
MS.gene067199.t1 | MTR_7g050710 | 26.524 | 328 | 178 | 13 | 391 | 691 | 14 | 305 | 2.23e-16 | 81.6 |
MS.gene067199.t1 | MTR_1g035540 | 58.333 | 48 | 20 | 0 | 658 | 705 | 31 | 78 | 1.35e-13 | 69.3 |
MS.gene067199.t1 | MTR_1g035540 | 40.000 | 95 | 49 | 3 | 322 | 416 | 8 | 94 | 8.31e-13 | 67.0 |
MS.gene067199.t1 | MTR_8g103940 | 24.407 | 295 | 179 | 11 | 421 | 691 | 55 | 329 | 4.63e-12 | 70.1 |
MS.gene067199.t1 | MTR_1g035480 | 32.000 | 150 | 71 | 3 | 14 | 137 | 26 | 170 | 5.44e-12 | 65.9 |
MS.gene067199.t1 | MTR_7g050560 | 25.360 | 347 | 190 | 14 | 391 | 713 | 14 | 315 | 8.91e-12 | 67.8 |
MS.gene067199.t1 | MTR_1g035520 | 41.758 | 91 | 47 | 4 | 410 | 495 | 294 | 383 | 1.53e-11 | 67.8 |
MS.gene067199.t1 | MTR_1g033740 | 30.000 | 150 | 76 | 3 | 14 | 137 | 31 | 177 | 2.80e-11 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 166 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTGTTCAACAAGAAATATTT+TGG | 0.120375 | 1.2:+20640664 | MS.gene067199:CDS |
TATTTCAAGGTTAAGATATT+TGG | 0.166474 | 1.2:+20647289 | MS.gene067199:intron |
TGTTTCAAGGTTAAGATATT+TGG | 0.182176 | 1.2:+20640789 | MS.gene067199:CDS |
TCCAAAAGTGCATGCTCTTC+AGG | 0.202285 | 1.2:+20648513 | MS.gene067199:CDS |
CCCTGAAGAGCTTGCACTTT+TGG | 0.204038 | 1.2:-20648705 | None:intergenic |
AAACTCTCTGGAGTTGAAAA+TGG | 0.208119 | 1.2:+20644717 | MS.gene067199:CDS |
CCATGGGAAGCATGCTCTTT+TGG | 0.216932 | 1.2:-20649364 | None:intergenic |
CCCTGAAGAGCATGCACTTT+TGG | 0.222036 | 1.2:-20648862 | None:intergenic |
TGGCAATGTAACATCGAAAA+AGG | 0.224536 | 1.2:-20641984 | None:intergenic |
AAGAACTCACCTGAGAATTT+TGG | 0.224542 | 1.2:-20641011 | None:intergenic |
CCCTGAAGAGCATGCACTTT+TGG | 0.229018 | 1.2:-20648514 | None:intergenic |
TCCAAAAGTGCAAGCTCTTC+AGG | 0.235087 | 1.2:+20648704 | MS.gene067199:CDS |
TCCAAAAGTGCATGCTCTTC+AGG | 0.235087 | 1.2:+20648861 | MS.gene067199:CDS |
TTTGGGAATTGAAGGAATAT+TGG | 0.249785 | 1.2:-20640639 | None:intergenic |
CCCTGGAGAGCATGCACTTT+TGG | 0.251459 | 1.2:-20649054 | None:intergenic |
AGAAGTATGTGCAGAACTTT+TGG | 0.251833 | 1.2:+20640601 | MS.gene067199:CDS |
GCATGCACCAAAGAGATTTA+TGG | 0.255225 | 1.2:+20650284 | MS.gene067199:intron |
GCACACTTGAACAAATTTAA+AGG | 0.264956 | 1.2:+20642191 | MS.gene067199:CDS |
GCACACTTGAACAAATTTAA+AGG | 0.264956 | 1.2:+20643610 | MS.gene067199:CDS |
ACACAATACATTCAAGGTTT+TGG | 0.282064 | 1.2:+20650146 | MS.gene067199:CDS |
AAAATTTGTGGAGTTGAAAA+TGG | 0.282812 | 1.2:+20650323 | MS.gene067199:CDS |
CCTCTTTCCATAAATCTCTT+TGG | 0.284821 | 1.2:-20650291 | None:intergenic |
ACGATAGTATTCATGGTTAT+AGG | 0.290213 | 1.2:+20644773 | MS.gene067199:CDS |
AAAGTTCTGCACATACTTCT+TGG | 0.296036 | 1.2:-20640598 | None:intergenic |
AAGCTTGGTTGCTCCCTTGA+TGG | 0.305403 | 1.2:-20643823 | None:intergenic |
ATTTCTTGTTGAACACCATT+TGG | 0.305917 | 1.2:-20640657 | None:intergenic |
TCTTCTAATTCTATGACTAT+TGG | 0.312742 | 1.2:+20647982 | MS.gene067199:CDS |
CAATATTATCCTATGAAAAT+CGG | 0.317709 | 1.2:-20640440 | None:intergenic |
AAGGATTTGAAGGAACTTCT+AGG | 0.319754 | 1.2:+20642602 | MS.gene067199:CDS |
TTGGGAATTGAAGGAATATT+GGG | 0.332157 | 1.2:-20640638 | None:intergenic |
CTTAGGGTTTGGTCCCTTGT+TGG | 0.342702 | 1.2:-20648109 | None:intergenic |
CCTTGCAACTTCTTAGGGTT+TGG | 0.347894 | 1.2:-20648120 | None:intergenic |
AATTATTACGATAGTATTCA+TGG | 0.354510 | 1.2:+20644766 | MS.gene067199:CDS |
GTGTTTGATGTTTCAATTGT+TGG | 0.364550 | 1.2:+20644886 | MS.gene067199:CDS |
GGGATTGCAAATTTAATAGT+TGG | 0.369832 | 1.2:+20642212 | MS.gene067199:CDS |
CACACTTGAACAAATTTAAA+GGG | 0.370401 | 1.2:+20642192 | MS.gene067199:CDS |
CACACTTGAACAAATTTAAA+GGG | 0.370401 | 1.2:+20643611 | MS.gene067199:CDS |
TATAAAGAAGGGATCTCTTC+TGG | 0.374152 | 1.2:+20648248 | MS.gene067199:CDS |
AATTTACCCTACCGGGTGTT+TGG | 0.375647 | 1.2:-20650175 | None:intergenic |
TATAAAGAAGGGATCTCTTA+TGG | 0.386855 | 1.2:+20648630 | MS.gene067199:CDS |
CAAGCTCAAATGACAACAAA+TGG | 0.395225 | 1.2:+20647427 | MS.gene067199:CDS |
TTTCTTGTTGAACACCATTT+GGG | 0.398115 | 1.2:-20640656 | None:intergenic |
ATAGTTTATTTCTAAAGTAT+TGG | 0.406626 | 1.2:-20640814 | None:intergenic |
AAATTTGTGGAGTTGAAAAT+GGG | 0.407272 | 1.2:+20650324 | MS.gene067199:CDS |
AACTCTCTGGAGTTGAAAAT+GGG | 0.410653 | 1.2:+20644718 | MS.gene067199:CDS |
CTCTCATTAACAACTTCAAC+TGG | 0.412647 | 1.2:-20643373 | None:intergenic |
AATATTATCCTATGAAAATC+GGG | 0.414910 | 1.2:-20640439 | None:intergenic |
CTCTCATTAACAACTTCAAC+TGG | 0.420982 | 1.2:-20641944 | None:intergenic |
AGCTTCAACAACTTCATCAA+TGG | 0.423599 | 1.2:-20640850 | None:intergenic |
TCCAAAAGTGCATGCTCTCC+AGG | 0.424580 | 1.2:+20649053 | MS.gene067199:CDS |
AAAGAATTCAAAGTGGAGAT+TGG | 0.425579 | 1.2:+20644823 | MS.gene067199:CDS |
GTTGTCATTTGAGCTTGCTT+TGG | 0.430811 | 1.2:-20647421 | None:intergenic |
CCAAAAGTGCATGCTCTTCA+GGG | 0.432133 | 1.2:+20648514 | MS.gene067199:CDS |
GGGATTGCAAATTTAAGAGT+TGG | 0.438060 | 1.2:+20643631 | MS.gene067199:CDS |
CCAAAGGAGTTTATGAAAAG+AGG | 0.438669 | 1.2:+20644685 | MS.gene067199:CDS |
GAACACCATTTGGGAATTGA+AGG | 0.440819 | 1.2:-20640647 | None:intergenic |
AGTTGGTGAGGACAAGACTA+TGG | 0.440819 | 1.2:+20643648 | MS.gene067199:CDS |
CATAGGTGGATCATGTTTCA+AGG | 0.445568 | 1.2:+20640776 | MS.gene067199:intron |
AAGTTCTGCACATACTTCTT+GGG | 0.445593 | 1.2:-20640597 | None:intergenic |
GATGAAACACAATACATTCA+AGG | 0.445828 | 1.2:+20650140 | MS.gene067199:CDS |
AGTTGGTGAGGACAAGACTA+TGG | 0.446007 | 1.2:+20642229 | MS.gene067199:CDS |
CCAAAGAGAAAAGGATTTGA+AGG | 0.447001 | 1.2:+20642592 | MS.gene067199:CDS |
AGGAAGTCATGAAAACTCTC+TGG | 0.451275 | 1.2:+20644705 | MS.gene067199:CDS |
CTTTCAAGAAGATGATTTGT+TGG | 0.452264 | 1.2:-20642631 | None:intergenic |
CCAAAAGTGCATGCTCTTCA+GGG | 0.454566 | 1.2:+20648862 | MS.gene067199:CDS |
GACTTACCATCCTGCATCCA+TGG | 0.457913 | 1.2:-20642018 | None:intergenic |
GAGACACTGGAGAAACTTGT+AGG | 0.463029 | 1.2:+20648294 | MS.gene067199:CDS |
GTTATAGGTTCTCTGAAGGT+TGG | 0.464034 | 1.2:+20644788 | MS.gene067199:CDS |
GATATTAATTTCTTTAAGCT+TGG | 0.469147 | 1.2:-20643838 | None:intergenic |
TTTCAAGAAGATGATTTGTT+GGG | 0.470648 | 1.2:-20642630 | None:intergenic |
CCAAAAGTGCAAGCTCTTCA+GGG | 0.474142 | 1.2:+20648705 | MS.gene067199:CDS |
AGAAGATCTCTTGTGACTAC+TGG | 0.477196 | 1.2:+20643700 | MS.gene067199:CDS |
CCGTGACAAGGTTATAAAGA+AGG | 0.482547 | 1.2:+20648618 | MS.gene067199:intron |
TTACGCCCATGGTCATATCT+TGG | 0.485636 | 1.2:+20647761 | MS.gene067199:CDS |
CCATGACAAGGTTATAAAGA+AGG | 0.491612 | 1.2:+20648236 | MS.gene067199:intron |
CCATGACAAGGTTATAAAGA+AGG | 0.491612 | 1.2:+20648775 | MS.gene067199:intron |
AATCTTACGCCCATGGATGC+AGG | 0.492072 | 1.2:+20642008 | MS.gene067199:CDS |
GTAAATTTGTGATGACTCAA+AGG | 0.493932 | 1.2:+20648052 | MS.gene067199:CDS |
AAGACACTCGAGAAACTTGT+AGG | 0.496208 | 1.2:+20648485 | MS.gene067199:CDS |
CCGTTACTATTACTCCATCA+AGG | 0.499776 | 1.2:+20643809 | MS.gene067199:CDS |
TGCAAATTTAATAGTTGGTG+AGG | 0.500399 | 1.2:+20642217 | MS.gene067199:CDS |
AACAATAGAACAAACAGCTA+AGG | 0.501698 | 1.2:-20644917 | None:intergenic |
AAGACGCTGGAGAAACTTGT+AGG | 0.502167 | 1.2:+20648676 | MS.gene067199:CDS |
TAAATTTGTGATGACTCAAA+GGG | 0.506330 | 1.2:+20648053 | MS.gene067199:CDS |
ACTATATCCACTTTCATAGC+AGG | 0.506832 | 1.2:-20647943 | None:intergenic |
GGTGATAATCCAAAGAGAAA+AGG | 0.509436 | 1.2:+20642583 | MS.gene067199:CDS |
CCAAAGAGATTTATGGAAAG+AGG | 0.511759 | 1.2:+20650291 | MS.gene067199:CDS |
ATATTCCTTCAATTCCCAAA+TGG | 0.516176 | 1.2:+20640642 | MS.gene067199:CDS |
CAATTACCAGGTTATAAAGA+AGG | 0.517705 | 1.2:+20642547 | MS.gene067199:intron |
AAGACATTGGAGAAACATCT+AGG | 0.517707 | 1.2:+20649335 | MS.gene067199:CDS |
TGCAAATTTAAGAGTTGGTG+AGG | 0.518069 | 1.2:+20643636 | MS.gene067199:CDS |
TCATACTTGAACAAATTTGA+AGG | 0.519341 | 1.2:+20647892 | MS.gene067199:CDS |
ATAGTAATAGTGAATAAAAG+TGG | 0.519587 | 1.2:-20648078 | None:intergenic |
CTAATTCTATGACTATTGGT+TGG | 0.519860 | 1.2:+20647986 | MS.gene067199:CDS |
CATACTTGAACAAATTTGAA+GGG | 0.523429 | 1.2:+20647893 | MS.gene067199:CDS |
GGGATTGCAAGCTTAAGAGT+TGG | 0.529065 | 1.2:+20647913 | MS.gene067199:CDS |
ACAATAGAACAAACAGCTAA+GGG | 0.530051 | 1.2:-20644916 | None:intergenic |
ATTCTAAAGAGGAGAGACAC+TGG | 0.536518 | 1.2:+20648281 | MS.gene067199:CDS |
ACTACCCAGCCAAAATTCTC+AGG | 0.537063 | 1.2:+20641002 | MS.gene067199:CDS |
TTACCAACATATTGCTGCCA+TGG | 0.540173 | 1.2:-20643447 | None:intergenic |
CATGGTTATAGGTTCTCTGA+AGG | 0.540492 | 1.2:+20644784 | MS.gene067199:CDS |
GTTTCTCCAATGTCTTTCCT+CGG | 0.540949 | 1.2:-20649328 | None:intergenic |
CATCCATGGGCGTAAGATTG+TGG | 0.545061 | 1.2:-20642004 | None:intergenic |
GTTGAAGTTGTTAATGAGAG+TGG | 0.546800 | 1.2:+20641947 | MS.gene067199:CDS |
ATGATCGTGATATTCTAAAG+AGG | 0.547186 | 1.2:+20648809 | MS.gene067199:CDS |
TACTATCACTAAAGCCAACA+AGG | 0.548522 | 1.2:+20648095 | MS.gene067199:CDS |
TCCTTTGCAGGTGGGGACAG+AGG | 0.549969 | 1.2:+20641890 | MS.gene067199:intron |
ATTCTAAAGAGGAAAGACAT+TGG | 0.551775 | 1.2:+20648820 | MS.gene067199:CDS |
CATGACAAGGTTATAAAGAA+GGG | 0.554767 | 1.2:+20648237 | MS.gene067199:intron |
CATGACAAGGTTATAAAGAA+GGG | 0.554767 | 1.2:+20648776 | MS.gene067199:intron |
TGGATTATCACCACAAGAAG+AGG | 0.557132 | 1.2:-20642572 | None:intergenic |
AAGCTCAAATGACAACAAAT+GGG | 0.558116 | 1.2:+20647428 | MS.gene067199:CDS |
CAGAGGAGGCATGATTAAGA+AGG | 0.558194 | 1.2:+20641907 | MS.gene067199:CDS |
CGTGACAAGGTTATAAAGAA+GGG | 0.558822 | 1.2:+20648619 | MS.gene067199:intron |
GTGATCGTGATATTCTAAAG+TGG | 0.561806 | 1.2:+20648461 | MS.gene067199:CDS |
GATCTCTTGTGACTACTGGT+TGG | 0.563285 | 1.2:+20643704 | MS.gene067199:CDS |
TTAAAGAAATTAATATCGCA+AGG | 0.569842 | 1.2:+20643844 | MS.gene067199:CDS |
AAGACACTGGAGAAATTTGT+CGG | 0.573497 | 1.2:+20649025 | MS.gene067199:CDS |
CAGTGGAGGCATGATTAAGA+AGG | 0.573799 | 1.2:+20643336 | MS.gene067199:CDS |
ATAGTAACGGTGAATGAAAG+TGG | 0.574816 | 1.2:-20643796 | None:intergenic |
TTGTCAAAATCTTACGTCCA+TGG | 0.576626 | 1.2:+20643430 | MS.gene067199:CDS |
TATGATCTTGAAAAGTTGCA+TGG | 0.578670 | 1.2:-20647874 | None:intergenic |
TACTTTGCAGGTAGGGACAG+TGG | 0.579327 | 1.2:+20643319 | MS.gene067199:intron |
CGTCCATGGCAGCAATATGT+TGG | 0.579724 | 1.2:+20643444 | MS.gene067199:CDS |
AATTACCAGGTTATAAAGAA+GGG | 0.583013 | 1.2:+20642548 | MS.gene067199:intron |
TGCAAGCTTAAGAGTTGGAG+AGG | 0.584782 | 1.2:+20647918 | MS.gene067199:CDS |
GTGATCGTGATATTCTAAAG+AGG | 0.585254 | 1.2:+20648652 | MS.gene067199:CDS |
GTTTCTCCAGATTCAGAAGG+TGG | 0.585383 | 1.2:+20644508 | MS.gene067199:intron |
TTGCCACAATCTTACGCCCA+TGG | 0.586417 | 1.2:+20642001 | MS.gene067199:CDS |
ACATTTGCAGAATGTTCCAA+AGG | 0.587088 | 1.2:+20644669 | MS.gene067199:intron |
AGAGGACCCTGCTATGAAAG+TGG | 0.587637 | 1.2:+20647936 | MS.gene067199:CDS |
ATTCTACCGAGGAAAGACAT+TGG | 0.588353 | 1.2:+20649322 | MS.gene067199:CDS |
CCAAAAGAGCATGCTTCCCA+TGG | 0.588789 | 1.2:+20649364 | MS.gene067199:CDS |
ATTTGTGGAGTTGAAAATGG+GGG | 0.588853 | 1.2:+20650326 | MS.gene067199:CDS |
ACTTACCATCCTGCATCCAT+GGG | 0.589632 | 1.2:-20642017 | None:intergenic |
CCAAACCCTAAGAAGTTGCA+AGG | 0.590895 | 1.2:+20648120 | MS.gene067199:CDS |
TGTGTTTCTCCAGATTCAGA+AGG | 0.591761 | 1.2:+20644505 | MS.gene067199:intron |
GTGATCGTGATATTCTAAAG+AGG | 0.591830 | 1.2:+20648270 | MS.gene067199:CDS |
ATGACACAAACTTACGCCCA+TGG | 0.594951 | 1.2:+20647750 | MS.gene067199:CDS |
CCAAAAGTGCATGCTCTCCA+GGG | 0.599112 | 1.2:+20649054 | MS.gene067199:CDS |
AAAGAAGGAGTTGAAGTGAG+TGG | 0.599535 | 1.2:+20640885 | MS.gene067199:CDS |
CTCTCTGGAGTTGAAAATGG+GGG | 0.599653 | 1.2:+20644720 | MS.gene067199:CDS |
ATTCTAAAGAGGAAAGACGC+TGG | 0.600604 | 1.2:+20648663 | MS.gene067199:CDS |
TTTGTGGAGTTGAAAATGGG+GGG | 0.605902 | 1.2:+20650327 | MS.gene067199:CDS |
CGTTACTATTACTCCATCAA+GGG | 0.606445 | 1.2:+20643810 | MS.gene067199:CDS |
TTTGGTGAATTCCAAACACC+CGG | 0.613257 | 1.2:+20650164 | MS.gene067199:CDS |
ATTCATAAAAGAATTCAAAG+TGG | 0.616700 | 1.2:+20644816 | MS.gene067199:CDS |
CTATATCCACTTTCATAGCA+GGG | 0.623870 | 1.2:-20647942 | None:intergenic |
TTTGCAGGTGGGGACAGAGG+AGG | 0.624914 | 1.2:+20641893 | MS.gene067199:intron |
AATTTGTGGAGTTGAAAATG+GGG | 0.630421 | 1.2:+20650325 | MS.gene067199:CDS |
AAATACGCACCCAAGCTCAA+AGG | 0.630442 | 1.2:+20640937 | MS.gene067199:CDS |
AAAGAAGGGACCTCTTCTTG+TGG | 0.632268 | 1.2:+20642562 | MS.gene067199:CDS |
TGATGTGTATTCAAAATACC+CGG | 0.654603 | 1.2:+20644561 | MS.gene067199:CDS |
CCTTGATGGAGTAATAGTAA+CGG | 0.655922 | 1.2:-20643809 | None:intergenic |
ACTCTCTGGAGTTGAAAATG+GGG | 0.658989 | 1.2:+20644719 | MS.gene067199:CDS |
ACTATCACTAAAGCCAACAA+GGG | 0.662647 | 1.2:+20648096 | MS.gene067199:CDS |
TTACGCCCATGGATGCAGGA+TGG | 0.665735 | 1.2:+20642012 | MS.gene067199:CDS |
CAATAGAACAAACAGCTAAG+GGG | 0.667474 | 1.2:-20644915 | None:intergenic |
ACTTACCAAGATATGACCAT+GGG | 0.667874 | 1.2:-20647766 | None:intergenic |
ATATTATCCTATGAAAATCG+GGG | 0.671225 | 1.2:-20640438 | None:intergenic |
AGGTAGGAACATTGAAGACA+CGG | 0.671619 | 1.2:+20647647 | MS.gene067199:intron |
AAGACATTGGAGAAACCTGT+AGG | 0.672963 | 1.2:+20648833 | MS.gene067199:CDS |
GTGATAAGAATATTCTACCG+AGG | 0.677906 | 1.2:+20649311 | MS.gene067199:CDS |
TACTTACCAAGATATGACCA+TGG | 0.678715 | 1.2:-20647767 | None:intergenic |
TCTCTGGAGTTGAAAATGGG+GGG | 0.680996 | 1.2:+20644721 | MS.gene067199:CDS |
TTTGCAGGTAGGGACAGTGG+AGG | 0.713017 | 1.2:+20643322 | MS.gene067199:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 20640421 | 20650353 | 20640421 | ID=MS.gene067199 |
chr1.2 | mRNA | 20640421 | 20650353 | 20640421 | ID=MS.gene067199.t1;Parent=MS.gene067199 |
chr1.2 | exon | 20640421 | 20640477 | 20640421 | ID=MS.gene067199.t1.exon1;Parent=MS.gene067199.t1 |
chr1.2 | CDS | 20640421 | 20640477 | 20640421 | ID=cds.MS.gene067199.t1;Parent=MS.gene067199.t1 |
chr1.2 | exon | 20640591 | 20640699 | 20640591 | ID=MS.gene067199.t1.exon2;Parent=MS.gene067199.t1 |
chr1.2 | CDS | 20640591 | 20640699 | 20640591 | ID=cds.MS.gene067199.t1;Parent=MS.gene067199.t1 |
chr1.2 | exon | 20640781 | 20641023 | 20640781 | ID=MS.gene067199.t1.exon3;Parent=MS.gene067199.t1 |
chr1.2 | CDS | 20640781 | 20641023 | 20640781 | ID=cds.MS.gene067199.t1;Parent=MS.gene067199.t1 |
chr1.2 | exon | 20641900 | 20642033 | 20641900 | ID=MS.gene067199.t1.exon4;Parent=MS.gene067199.t1 |
chr1.2 | CDS | 20641900 | 20642033 | 20641900 | ID=cds.MS.gene067199.t1;Parent=MS.gene067199.t1 |
chr1.2 | exon | 20642167 | 20642302 | 20642167 | ID=MS.gene067199.t1.exon5;Parent=MS.gene067199.t1 |
chr1.2 | CDS | 20642167 | 20642302 | 20642167 | ID=cds.MS.gene067199.t1;Parent=MS.gene067199.t1 |
chr1.2 | exon | 20642557 | 20642652 | 20642557 | ID=MS.gene067199.t1.exon6;Parent=MS.gene067199.t1 |
chr1.2 | CDS | 20642557 | 20642652 | 20642557 | ID=cds.MS.gene067199.t1;Parent=MS.gene067199.t1 |
chr1.2 | exon | 20643329 | 20643465 | 20643329 | ID=MS.gene067199.t1.exon7;Parent=MS.gene067199.t1 |
chr1.2 | CDS | 20643329 | 20643465 | 20643329 | ID=cds.MS.gene067199.t1;Parent=MS.gene067199.t1 |
chr1.2 | exon | 20643586 | 20643865 | 20643586 | ID=MS.gene067199.t1.exon8;Parent=MS.gene067199.t1 |
chr1.2 | CDS | 20643586 | 20643865 | 20643586 | ID=cds.MS.gene067199.t1;Parent=MS.gene067199.t1 |
chr1.2 | exon | 20644518 | 20644582 | 20644518 | ID=MS.gene067199.t1.exon9;Parent=MS.gene067199.t1 |
chr1.2 | CDS | 20644518 | 20644582 | 20644518 | ID=cds.MS.gene067199.t1;Parent=MS.gene067199.t1 |
chr1.2 | exon | 20644679 | 20644924 | 20644679 | ID=MS.gene067199.t1.exon10;Parent=MS.gene067199.t1 |
chr1.2 | CDS | 20644679 | 20644924 | 20644679 | ID=cds.MS.gene067199.t1;Parent=MS.gene067199.t1 |
chr1.2 | exon | 20647298 | 20647499 | 20647298 | ID=MS.gene067199.t1.exon11;Parent=MS.gene067199.t1 |
chr1.2 | CDS | 20647298 | 20647499 | 20647298 | ID=cds.MS.gene067199.t1;Parent=MS.gene067199.t1 |
chr1.2 | exon | 20647649 | 20647782 | 20647649 | ID=MS.gene067199.t1.exon12;Parent=MS.gene067199.t1 |
chr1.2 | CDS | 20647649 | 20647782 | 20647649 | ID=cds.MS.gene067199.t1;Parent=MS.gene067199.t1 |
chr1.2 | exon | 20647868 | 20648141 | 20647868 | ID=MS.gene067199.t1.exon13;Parent=MS.gene067199.t1 |
chr1.2 | CDS | 20647868 | 20648141 | 20647868 | ID=cds.MS.gene067199.t1;Parent=MS.gene067199.t1 |
chr1.2 | exon | 20648246 | 20648344 | 20648246 | ID=MS.gene067199.t1.exon14;Parent=MS.gene067199.t1 |
chr1.2 | CDS | 20648246 | 20648344 | 20648246 | ID=cds.MS.gene067199.t1;Parent=MS.gene067199.t1 |
chr1.2 | exon | 20648437 | 20648535 | 20648437 | ID=MS.gene067199.t1.exon15;Parent=MS.gene067199.t1 |
chr1.2 | CDS | 20648437 | 20648535 | 20648437 | ID=cds.MS.gene067199.t1;Parent=MS.gene067199.t1 |
chr1.2 | exon | 20648628 | 20648726 | 20648628 | ID=MS.gene067199.t1.exon16;Parent=MS.gene067199.t1 |
chr1.2 | CDS | 20648628 | 20648726 | 20648628 | ID=cds.MS.gene067199.t1;Parent=MS.gene067199.t1 |
chr1.2 | exon | 20648785 | 20648883 | 20648785 | ID=MS.gene067199.t1.exon17;Parent=MS.gene067199.t1 |
chr1.2 | CDS | 20648785 | 20648883 | 20648785 | ID=cds.MS.gene067199.t1;Parent=MS.gene067199.t1 |
chr1.2 | exon | 20649023 | 20649075 | 20649023 | ID=MS.gene067199.t1.exon18;Parent=MS.gene067199.t1 |
chr1.2 | CDS | 20649023 | 20649075 | 20649023 | ID=cds.MS.gene067199.t1;Parent=MS.gene067199.t1 |
chr1.2 | exon | 20649287 | 20649385 | 20649287 | ID=MS.gene067199.t1.exon19;Parent=MS.gene067199.t1 |
chr1.2 | CDS | 20649287 | 20649385 | 20649287 | ID=cds.MS.gene067199.t1;Parent=MS.gene067199.t1 |
chr1.2 | exon | 20650129 | 20650185 | 20650129 | ID=MS.gene067199.t1.exon20;Parent=MS.gene067199.t1 |
chr1.2 | CDS | 20650129 | 20650185 | 20650129 | ID=cds.MS.gene067199.t1;Parent=MS.gene067199.t1 |
chr1.2 | exon | 20650285 | 20650353 | 20650285 | ID=MS.gene067199.t1.exon21;Parent=MS.gene067199.t1 |
chr1.2 | CDS | 20650285 | 20650353 | 20650285 | ID=cds.MS.gene067199.t1;Parent=MS.gene067199.t1 |
Gene Sequence |
Protein sequence |