AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene067264

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene067264.t1 MTR_8g046350 93.976 166 7 1 1 166 1 163 7.74e-112 315
MS.gene067264.t1 MTR_8g051580 62.147 177 64 1 1 174 1 177 5.21e-75 223
MS.gene067264.t1 MTR_1g047550 55.429 175 75 1 1 172 1 175 8.07e-65 197
MS.gene067264.t1 MTR_4g131030 52.973 185 67 1 1 165 1 185 7.90e-64 196
MS.gene067264.t1 MTR_8g079502 56.287 167 70 1 1 164 1 167 6.40e-62 189
MS.gene067264.t1 MTR_1g063160 52.000 175 81 1 1 172 1 175 3.58e-59 182
MS.gene067264.t1 MTR_1g054265 51.190 168 79 1 1 165 1 168 6.43e-56 174
MS.gene067264.t1 MTR_4g094632 36.747 166 86 5 1 161 1 152 4.59e-29 105
MS.gene067264.t1 MTR_3g080940 44.538 119 58 3 1 114 8 123 8.85e-26 98.2
MS.gene067264.t1 MTR_3g052870 38.095 147 70 3 2 141 9 141 6.18e-25 96.3
MS.gene067264.t1 MTR_1g105920 43.860 114 57 2 2 108 9 122 1.60e-24 95.9
MS.gene067264.t1 MTR_1g106070 41.228 114 60 2 2 108 9 122 1.02e-23 92.4
MS.gene067264.t1 MTR_3g052920 47.423 97 46 2 2 93 9 105 1.21e-23 93.6
MS.gene067264.t1 MTR_5g045560 51.282 78 38 0 1 78 8 85 2.62e-23 92.4
MS.gene067264.t1 MTR_1g105910 45.545 101 50 1 2 97 9 109 6.03e-23 91.7
MS.gene067264.t1 MTR_5g055100 53.247 77 36 0 2 78 9 85 6.09e-23 91.7
MS.gene067264.t1 MTR_2g105290 36.567 134 79 3 1 133 11 139 6.81e-23 90.1
MS.gene067264.t1 MTR_1g077360 54.545 77 35 0 2 78 9 85 9.10e-23 91.3
MS.gene067264.t1 MTR_2g030740 41.880 117 61 2 2 111 9 125 1.21e-22 90.9
MS.gene067264.t1 MTR_1g108580 36.735 147 67 3 2 122 9 155 1.39e-22 90.5
MS.gene067264.t1 MTR_4g094638 50.000 76 38 0 1 76 1 76 2.74e-22 88.6
MS.gene067264.t1 MTR_3g030770 40.496 121 67 2 2 117 9 129 3.01e-22 89.7
MS.gene067264.t1 MTR_8g043650 45.361 97 48 1 2 93 9 105 3.36e-22 89.7
MS.gene067264.t1 MTR_1g108510 43.243 111 57 3 2 107 9 118 5.27e-22 89.0
MS.gene067264.t1 MTR_1g012570 40.650 123 61 2 2 112 9 131 5.58e-22 89.0
MS.gene067264.t1 MTR_1g075600 53.247 77 36 0 2 78 9 85 6.13e-22 89.0
MS.gene067264.t1 MTR_2g093190 36.054 147 68 1 2 122 9 155 8.93e-22 88.6
MS.gene067264.t1 MTR_8g086290 36.496 137 79 4 2 136 12 142 1.01e-21 87.0
MS.gene067264.t1 MTR_0121s0080 35.065 154 85 2 2 140 9 162 3.31e-21 87.0
MS.gene067264.t1 MTR_3g030780 50.649 77 38 0 2 78 9 85 3.39e-21 84.3
MS.gene067264.t1 MTR_7g028448 36.364 132 68 3 17 135 27 155 5.07e-21 85.1
MS.gene067264.t1 MTR_4g036915 36.364 132 68 3 17 135 27 155 5.07e-21 85.1
MS.gene067264.t1 MTR_5g053390 50.649 77 38 0 2 78 9 85 5.24e-21 86.7
MS.gene067264.t1 MTR_0121s0100 40.541 111 60 2 2 107 9 118 8.36e-21 83.6
MS.gene067264.t1 MTR_2g085250 50.649 77 38 0 2 78 9 85 1.50e-20 85.5
MS.gene067264.t1 MTR_2g085280 50.649 77 38 0 2 78 9 85 1.51e-20 85.5
MS.gene067264.t1 MTR_1g105905 39.823 113 59 2 18 125 8 116 2.23e-19 82.0
MS.gene067264.t1 MTR_7g062350 53.968 63 29 0 16 78 35 97 3.44e-17 76.6
MS.gene067264.t1 MTR_4g127140 46.154 78 42 0 1 78 11 88 9.51e-17 74.3
MS.gene067264.t1 MTR_5g021270 29.167 144 68 2 1 144 1 110 5.70e-16 73.2
MS.gene067264.t1 MTR_5g021270 29.167 144 68 2 1 144 1 110 5.91e-16 73.2
MS.gene067264.t1 MTR_3g067875 58.333 48 20 0 18 65 8 55 1.69e-15 67.8
MS.gene067264.t1 MTR_5g066180 44.444 72 40 0 1 72 1 72 1.84e-15 71.6
MS.gene067264.t1 MTR_0003s0590 44.928 69 38 0 1 69 1 69 3.84e-15 71.2
MS.gene067264.t1 MTR_8g087860 32.110 109 74 0 1 109 17 125 4.59e-15 70.9
MS.gene067264.t1 MTR_1g053070 40.741 81 48 0 1 81 1 81 5.64e-15 70.5
MS.gene067264.t1 MTR_1g108500 63.830 47 17 0 18 64 113 159 7.48e-15 71.2
MS.gene067264.t1 MTR_3g067910 47.541 61 32 0 18 78 6 66 1.04e-14 67.0
MS.gene067264.t1 MTR_3g452380 44.928 69 38 0 1 69 16 84 1.18e-14 69.7
MS.gene067264.t1 MTR_8g033220 35.922 103 63 2 1 101 1 102 1.37e-14 69.3
MS.gene067264.t1 MTR_5g031000 44.928 69 38 0 1 69 1 69 1.50e-14 69.3
MS.gene067264.t1 MTR_8g033220 35.922 103 63 2 1 101 1 102 1.53e-14 69.3
MS.gene067264.t1 MTR_5g031000 44.928 69 38 0 1 69 1 69 1.69e-14 68.9
MS.gene067264.t1 MTR_3g109930 32.203 118 76 2 17 133 17 131 2.01e-14 67.8
MS.gene067264.t1 MTR_2g009890 37.931 87 53 1 1 87 1 86 2.69e-14 69.3
MS.gene067264.t1 MTR_4g093970 35.897 117 66 2 1 108 27 143 2.77e-14 68.6
MS.gene067264.t1 MTR_5g066960 50.000 60 30 0 1 60 1 60 4.92e-14 63.9
MS.gene067264.t1 MTR_2g017865 30.275 109 76 0 1 109 16 124 6.18e-14 68.2
MS.gene067264.t1 MTR_3g113030 45.833 72 37 1 1 72 1 70 9.01e-14 67.0
MS.gene067264.t1 MTR_7g075870 31.683 101 69 0 1 101 1 101 9.87e-14 66.6
MS.gene067264.t1 MTR_4g102530 42.029 69 40 0 1 69 1 69 1.74e-13 65.9
MS.gene067264.t1 MTR_3g005530 39.130 69 42 0 1 69 1 69 1.74e-13 66.2
MS.gene067264.t1 MTR_5g032150 39.286 84 50 1 1 84 1 83 2.45e-13 65.9
MS.gene067264.t1 MTR_8g033270 40.580 69 41 0 1 69 1 69 3.30e-13 65.9
MS.gene067264.t1 MTR_5g032520 39.286 84 50 1 1 84 1 83 3.67e-13 65.5
MS.gene067264.t1 MTR_7g075870 48.276 58 30 0 1 58 1 58 3.97e-13 65.1
MS.gene067264.t1 MTR_1g101970 40.845 71 42 0 1 71 1 71 9.80e-13 63.5
MS.gene067264.t1 MTR_4g084740 42.254 71 40 1 1 70 1 71 1.37e-12 64.7
MS.gene067264.t1 MTR_7g016600 44.262 61 34 0 1 61 1 61 2.09e-12 63.5
MS.gene067264.t1 MTR_1g038300 42.254 71 39 1 1 69 1 71 2.61e-12 63.2
MS.gene067264.t1 MTR_2g461710 43.860 57 32 0 1 57 1 57 2.82e-12 59.3
MS.gene067264.t1 MTR_8g022970 33.065 124 69 3 2 122 15 127 3.27e-12 62.0
MS.gene067264.t1 MTR_1g029670 33.621 116 60 3 1 114 1 101 3.70e-12 62.0
MS.gene067264.t1 MTR_3g102570 40.845 71 41 1 1 70 1 71 5.18e-12 63.2
MS.gene067264.t1 MTR_5g046870 45.614 57 31 0 1 57 1 57 6.39e-12 59.7
MS.gene067264.t1 MTR_3g437790 44.262 61 33 1 19 78 30 90 6.49e-12 61.2
MS.gene067264.t1 MTR_4g093030 36.170 94 58 1 1 92 1 94 6.85e-12 60.8
MS.gene067264.t1 MTR_4g109830 32.979 94 50 2 1 81 1 94 8.11e-12 62.0
MS.gene067264.t1 MTR_7g016630 35.616 73 46 1 1 72 1 73 8.65e-12 62.0
MS.gene067264.t1 MTR_8g066260 37.500 72 42 1 1 72 1 69 9.00e-12 61.6
MS.gene067264.t1 MTR_3g084980 47.368 57 30 0 1 57 1 57 9.08e-12 62.0
MS.gene067264.t1 MTR_3g088615 30.357 112 74 2 1 108 1 112 9.93e-12 60.8
MS.gene067264.t1 MTR_5g046790 36.111 72 43 1 1 72 1 69 1.04e-11 61.2
MS.gene067264.t1 MTR_5g041650 46.296 54 29 0 1 54 38 91 1.19e-11 62.4
MS.gene067264.t1 MTR_4g036050 40.278 72 42 1 1 71 1 72 1.25e-11 60.8
MS.gene067264.t1 MTR_8g097090 44.262 61 34 0 1 61 1 61 1.29e-11 61.2
MS.gene067264.t1 MTR_6g015975 45.614 57 31 0 1 57 1 57 1.38e-11 61.2
MS.gene067264.t1 MTR_4g036050 40.278 72 42 1 1 71 1 72 1.40e-11 60.5
MS.gene067264.t1 MTR_4g036050 40.278 72 42 1 1 71 1 72 1.45e-11 60.5
MS.gene067264.t1 MTR_4g109810 42.623 61 35 0 1 61 1 61 1.46e-11 61.2
MS.gene067264.t1 MTR_4g036050 40.278 72 42 1 1 71 1 72 1.61e-11 60.1
MS.gene067264.t1 MTR_4g108720 29.323 133 67 2 1 106 1 133 3.35e-11 60.8
MS.gene067264.t1 MTR_4g051538 31.250 96 54 2 19 108 26 115 3.36e-11 60.1
MS.gene067264.t1 MTR_7g075850 44.262 61 34 0 1 61 1 61 4.71e-11 60.1
MS.gene067264.t1 MTR_1g041615 59.524 42 17 0 17 58 21 62 8.76e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene067264.t1 AT2G34440 38.596 171 92 2 1 158 1 171 2.09e-34 119
MS.gene067264.t1 AT3G66656 48.819 127 59 2 1 121 1 127 5.93e-31 110
MS.gene067264.t1 AT2G24840 43.802 121 63 2 1 117 62 181 8.57e-29 107
MS.gene067264.t1 AT5G60440 42.254 142 71 4 2 136 7 144 9.97e-26 100
MS.gene067264.t1 AT4G36590 38.554 166 77 5 2 157 7 157 1.48e-24 96.3
MS.gene067264.t1 AT1G01530 37.500 152 87 3 1 148 6 153 9.53e-23 91.3
MS.gene067264.t1 AT1G65360 37.241 145 72 4 1 136 6 140 3.36e-21 87.0
MS.gene067264.t1 AT1G72350 38.843 121 67 3 2 122 43 156 6.60e-19 80.9
MS.gene067264.t1 AT1G47760 29.814 161 103 3 1 154 1 158 2.44e-18 78.6
MS.gene067264.t1 AT1G28460 46.377 69 37 0 2 70 8 76 3.69e-18 77.8
MS.gene067264.t1 AT1G29962 44.444 72 40 0 2 73 8 79 1.93e-17 76.3
MS.gene067264.t1 AT5G65070 37.815 119 70 4 1 116 1 118 3.14e-17 74.7
MS.gene067264.t1 AT5G65070 36.429 140 82 5 1 134 1 139 1.19e-16 74.3
MS.gene067264.t1 AT4G24540 35.632 87 56 0 1 87 1 87 2.96e-16 73.6
MS.gene067264.t1 AT4G22950 46.377 69 37 0 1 69 1 69 3.73e-16 72.4
MS.gene067264.t1 AT3G04100 43.421 76 40 1 2 74 14 89 3.77e-16 73.2
MS.gene067264.t1 AT3G61120 40.964 83 47 1 1 81 1 83 9.02e-16 72.8
MS.gene067264.t1 AT2G22630 47.826 69 36 0 1 69 1 69 1.27e-15 72.0
MS.gene067264.t1 AT2G22630 47.826 69 36 0 1 69 1 69 1.27e-15 72.0
MS.gene067264.t1 AT3G57230 43.478 69 39 0 1 69 1 69 1.64e-15 70.1
MS.gene067264.t1 AT4G22950 46.377 69 37 0 1 69 1 69 2.35e-15 71.2
MS.gene067264.t1 AT4G22950 46.377 69 37 0 1 69 1 69 2.35e-15 71.2
MS.gene067264.t1 AT5G65080 34.507 142 87 3 1 136 8 149 2.49e-15 70.5
MS.gene067264.t1 AT3G57390 44.928 69 38 0 1 69 1 69 2.76e-15 71.2
MS.gene067264.t1 AT3G57230 43.478 69 39 0 1 69 1 69 2.96e-15 71.2
MS.gene067264.t1 AT3G57230 43.478 69 39 0 1 69 1 69 2.96e-15 71.2
MS.gene067264.t1 AT2G45660 33.333 105 70 0 1 105 1 105 3.35e-15 69.7
MS.gene067264.t1 AT1G17310 50.685 73 34 1 2 74 48 118 3.40e-15 70.9
MS.gene067264.t1 AT3G57390 44.928 69 38 0 1 69 1 69 4.50e-15 71.2
MS.gene067264.t1 AT5G65070 38.298 94 56 1 1 94 1 92 5.00e-15 70.5
MS.gene067264.t1 AT1G17310 50.685 73 34 1 2 74 59 129 5.09e-15 70.5
MS.gene067264.t1 AT2G22540 36.538 104 64 2 1 103 1 103 5.95e-15 70.5
MS.gene067264.t1 AT2G22540 36.538 104 64 2 1 103 1 103 5.95e-15 70.5
MS.gene067264.t1 AT5G65070 38.298 94 56 1 1 94 1 92 6.98e-15 69.7
MS.gene067264.t1 AT2G45660 33.333 105 70 0 1 105 1 105 9.53e-15 69.7
MS.gene067264.t1 AT4G37940 44.928 69 38 0 1 69 1 69 9.74e-15 69.7
MS.gene067264.t1 AT5G13790 33.607 122 59 1 1 122 1 100 1.15e-14 70.1
MS.gene067264.t1 AT4G37940 44.928 69 38 0 1 69 1 69 1.33e-14 69.3
MS.gene067264.t1 AT2G45650 42.029 69 40 0 1 69 1 69 1.83e-14 69.3
MS.gene067264.t1 AT5G13790 35.052 97 63 0 1 97 1 97 2.20e-14 69.3
MS.gene067264.t1 AT4G37940 41.975 81 43 1 1 77 1 81 2.47e-14 67.8
MS.gene067264.t1 AT4G09960 34.066 91 55 1 1 91 1 86 3.64e-14 68.2
MS.gene067264.t1 AT4G09960 34.066 91 55 1 1 91 1 86 3.69e-14 68.2
MS.gene067264.t1 AT4G09960 34.066 91 55 1 1 91 2 87 3.90e-14 68.2
MS.gene067264.t1 AT4G11880 49.180 61 31 0 1 61 1 61 5.64e-14 66.6
MS.gene067264.t1 AT4G11880 49.180 61 31 0 1 61 1 61 5.64e-14 66.6
MS.gene067264.t1 AT4G09960 34.066 91 55 1 1 91 11 96 5.82e-14 67.8
MS.gene067264.t1 AT1G28450 40.278 72 43 0 2 73 8 79 6.41e-14 66.6
MS.gene067264.t1 AT4G09960 34.066 91 55 1 1 91 96 181 8.16e-14 68.2
MS.gene067264.t1 AT4G09960 34.066 91 55 1 1 91 27 112 8.16e-14 67.8
MS.gene067264.t1 AT5G10140 47.368 57 30 0 1 57 1 57 1.36e-13 65.5
MS.gene067264.t1 AT3G54340 45.161 62 34 0 1 62 1 62 1.51e-13 66.6
MS.gene067264.t1 AT4G11880 49.180 61 31 0 1 61 1 61 1.53e-13 66.2
MS.gene067264.t1 AT4G11880 49.180 61 31 0 1 61 1 61 1.53e-13 66.2
MS.gene067264.t1 AT5G10140 47.368 57 30 0 1 57 1 57 2.16e-13 65.5
MS.gene067264.t1 AT5G10140 47.368 57 30 0 1 57 1 57 2.34e-13 65.5
MS.gene067264.t1 AT5G10140 47.368 57 30 0 1 57 1 57 2.52e-13 65.1
MS.gene067264.t1 AT1G22130 45.070 71 38 1 1 70 1 71 2.87e-13 67.0
MS.gene067264.t1 AT2G42830 40.580 69 41 0 1 69 16 84 2.87e-13 65.9
MS.gene067264.t1 AT5G51870 40.580 69 41 0 1 69 1 69 3.04e-13 65.5
MS.gene067264.t1 AT5G51870 40.580 69 41 0 1 69 1 69 3.14e-13 64.7
MS.gene067264.t1 AT2G42830 35.106 94 56 2 1 94 16 104 3.18e-13 65.9
MS.gene067264.t1 AT3G58780 35.106 94 56 2 1 94 16 104 3.25e-13 65.9
MS.gene067264.t1 AT5G62165 38.667 75 46 0 1 75 1 75 3.37e-13 64.3
MS.gene067264.t1 AT5G62165 38.667 75 46 0 1 75 1 75 3.37e-13 64.3
MS.gene067264.t1 AT5G62165 38.667 75 46 0 1 75 1 75 3.37e-13 64.3
MS.gene067264.t1 AT3G58780 35.106 94 56 2 1 94 22 110 3.43e-13 65.9
MS.gene067264.t1 AT5G65070 44.828 58 32 0 1 58 1 58 3.62e-13 65.5
MS.gene067264.t1 AT5G62165 38.667 75 46 0 1 75 1 75 3.97e-13 62.8
MS.gene067264.t1 AT5G65060 50.909 55 27 0 1 55 1 55 4.01e-13 64.7
MS.gene067264.t1 AT5G20240 44.444 63 35 0 1 63 1 63 4.09e-13 63.9
MS.gene067264.t1 AT5G62165 49.123 57 29 0 1 57 1 57 4.72e-13 63.9
MS.gene067264.t1 AT5G62165 49.123 57 29 0 1 57 1 57 4.72e-13 63.9
MS.gene067264.t1 AT5G62165 49.123 57 29 0 1 57 1 57 4.72e-13 63.9
MS.gene067264.t1 AT5G62165 49.123 57 29 0 1 57 1 57 4.72e-13 63.9
MS.gene067264.t1 AT5G62165 49.123 57 29 0 1 57 1 57 4.72e-13 63.9
MS.gene067264.t1 AT5G51870 40.580 69 41 0 1 69 24 92 4.89e-13 64.7
MS.gene067264.t1 AT5G51870 40.580 69 41 0 1 69 1 69 5.10e-13 65.1
MS.gene067264.t1 AT3G58780 37.209 86 41 1 1 73 16 101 5.46e-13 65.1
MS.gene067264.t1 AT5G65050 49.091 55 28 0 1 55 1 55 6.06e-13 63.9
MS.gene067264.t1 AT3G58780 35.106 94 56 2 1 94 16 104 6.09e-13 65.5
MS.gene067264.t1 AT5G62165 38.667 75 46 0 1 75 1 75 6.70e-13 64.3
MS.gene067264.t1 AT5G62165 38.667 75 46 0 1 75 1 75 6.70e-13 64.3
MS.gene067264.t1 AT5G65060 50.909 55 27 0 1 55 1 55 7.06e-13 64.3
MS.gene067264.t1 AT5G51870 40.580 69 41 0 1 69 11 79 7.12e-13 64.7
MS.gene067264.t1 AT5G62165 40.580 69 41 0 1 69 1 69 7.15e-13 64.3
MS.gene067264.t1 AT5G62165 40.580 69 41 0 1 69 1 69 7.15e-13 64.3
MS.gene067264.t1 AT5G62165 40.580 69 41 0 1 69 1 69 7.15e-13 64.3
MS.gene067264.t1 AT5G65060 50.909 55 27 0 1 55 1 55 7.58e-13 63.9
MS.gene067264.t1 AT1G18750 40.789 76 43 1 1 74 1 76 8.49e-13 65.9
MS.gene067264.t1 AT1G18750 40.789 76 43 1 1 74 1 76 8.50e-13 65.9
MS.gene067264.t1 AT1G18750 40.789 76 43 1 1 74 1 76 8.82e-13 65.5
MS.gene067264.t1 AT1G77980 43.662 71 39 1 1 70 1 71 9.07e-13 65.5
MS.gene067264.t1 AT2G22540 49.091 55 28 0 1 55 1 55 1.01e-12 64.3
MS.gene067264.t1 AT5G20240 44.444 63 35 0 1 63 1 63 1.09e-12 63.9
MS.gene067264.t1 AT2G14210 42.857 70 39 1 1 69 1 70 1.49e-12 63.9
MS.gene067264.t1 AT4G18960 29.231 130 87 2 2 131 18 142 1.51e-12 64.3
MS.gene067264.t1 AT2G14210 42.857 70 39 1 1 69 1 70 1.56e-12 63.9
MS.gene067264.t1 AT5G51860 40.580 69 41 0 1 69 1 69 1.75e-12 63.5
MS.gene067264.t1 AT1G60920 43.750 80 39 3 3 76 5 84 1.89e-12 62.8
MS.gene067264.t1 AT5G51860 40.580 69 41 0 1 69 1 69 1.89e-12 63.2
MS.gene067264.t1 AT5G23260 54.386 57 26 0 1 57 1 57 1.96e-12 63.9
MS.gene067264.t1 AT5G23260 54.386 57 26 0 1 57 17 73 2.05e-12 63.9
MS.gene067264.t1 AT5G23260 54.386 57 26 0 1 57 17 73 2.15e-12 63.9
MS.gene067264.t1 AT2G03710 49.123 57 29 0 1 57 1 57 2.16e-12 62.8
MS.gene067264.t1 AT3G30260 34.831 89 54 2 1 88 1 86 2.17e-12 63.5
MS.gene067264.t1 AT5G23260 54.386 57 26 0 1 57 1 57 2.23e-12 63.5
MS.gene067264.t1 AT1G69120 40.278 72 40 1 1 72 1 69 2.38e-12 63.5
MS.gene067264.t1 AT5G65050 49.091 55 28 0 1 55 1 55 2.64e-12 62.8
MS.gene067264.t1 AT5G65050 49.091 55 28 0 1 55 1 55 2.90e-12 62.4
MS.gene067264.t1 AT5G65050 49.091 55 28 0 1 55 1 55 2.91e-12 62.4
MS.gene067264.t1 AT1G71692 50.909 55 27 0 1 55 1 55 3.58e-12 62.4
MS.gene067264.t1 AT1G69540 40.000 75 44 1 1 74 1 75 3.60e-12 63.9
MS.gene067264.t1 AT1G69120 40.278 72 40 1 1 72 1 69 3.79e-12 63.2
MS.gene067264.t1 AT1G69540 40.000 75 44 1 1 74 1 75 4.06e-12 63.5
MS.gene067264.t1 AT5G65080 44.643 56 31 0 1 56 8 63 5.15e-12 62.0
MS.gene067264.t1 AT3G02310 45.902 61 33 0 1 61 1 61 5.28e-12 62.0
MS.gene067264.t1 AT2G03710 49.123 57 29 0 1 57 1 57 5.32e-12 62.8
MS.gene067264.t1 AT2G03710 49.123 57 29 0 1 57 1 57 5.37e-12 62.8
MS.gene067264.t1 AT5G38620 41.667 72 38 1 3 70 6 77 5.77e-12 63.2
MS.gene067264.t1 AT4G37435 30.899 178 85 8 1 152 1 166 6.01e-12 61.6
MS.gene067264.t1 AT1G77950 38.028 71 43 1 1 70 1 71 6.03e-12 62.4
MS.gene067264.t1 AT1G77950 38.028 71 43 1 1 70 1 71 6.03e-12 62.4
MS.gene067264.t1 AT1G77950 38.028 71 43 1 1 70 1 71 6.03e-12 62.4
MS.gene067264.t1 AT1G77950 38.028 71 43 1 1 70 1 71 6.03e-12 62.4
MS.gene067264.t1 AT5G49490 43.056 72 37 1 3 70 46 117 6.34e-12 62.8
MS.gene067264.t1 AT1G46408 44.444 81 38 4 1 74 1 81 6.35e-12 62.4
MS.gene067264.t1 AT5G49420 41.558 77 40 2 3 74 8 84 6.75e-12 62.8
MS.gene067264.t1 AT5G60910 37.500 72 42 1 1 72 1 69 7.04e-12 62.0
MS.gene067264.t1 AT3G58780 44.262 61 34 0 1 61 16 76 7.25e-12 62.4
MS.gene067264.t1 AT5G04640 38.961 77 42 2 3 74 5 81 8.64e-12 62.4
MS.gene067264.t1 AT5G15800 44.262 61 34 0 1 61 1 61 8.66e-12 62.0
MS.gene067264.t1 AT5G15800 44.262 61 34 0 1 61 1 61 1.25e-11 61.6
MS.gene067264.t1 AT3G02310 47.368 57 30 0 1 57 1 57 1.31e-11 61.6
MS.gene067264.t1 AT1G26310 41.935 62 36 0 1 62 1 62 1.46e-11 61.6
MS.gene067264.t1 AT2G26320 44.262 61 34 0 1 61 17 77 1.51e-11 58.5
MS.gene067264.t1 AT1G24260 44.262 61 34 0 1 61 1 61 1.60e-11 61.2
MS.gene067264.t1 AT1G24260 44.262 61 34 0 1 61 1 61 1.61e-11 61.2
MS.gene067264.t1 AT1G24260 44.262 61 34 0 1 61 1 61 1.66e-11 61.2
MS.gene067264.t1 AT2G03060 42.105 76 42 2 1 74 1 76 7.06e-11 60.1
MS.gene067264.t1 AT2G03060 42.105 76 42 2 1 74 1 76 7.06e-11 60.1
MS.gene067264.t1 AT2G03060 42.105 76 42 2 1 74 1 76 7.06e-11 60.1
MS.gene067264.t1 AT2G03060 42.105 76 42 2 1 74 1 76 7.11e-11 60.1

Find 49 sgRNAs with CRISPR-Local

Find 55 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGAATAAACCTTACTCTTT+TGG 0.260036 8.1:+59327938 MS.gene067264:CDS
GAATACAACAATAACAATTT+TGG 0.284019 8.1:-59327909 None:intergenic
CCATCACCTTCTCATGTTGT+TGG 0.285658 8.1:-59328060 None:intergenic
TGTTAGAGGAAGGGGTTTCT+AGG 0.312060 8.1:-59328024 None:intergenic
ATTAATGGAGCTCAAGGATA+TGG 0.358058 8.1:+59328183 MS.gene067264:CDS
GGAATGGAAAGATTCATTAA+TGG 0.365090 8.1:+59328168 MS.gene067264:CDS
ATTCCTTAGGCTGGCTGAGT+AGG 0.404026 8.1:-59328150 None:intergenic
ACATTCTCAAAGCGCCGAAT+GGG 0.416565 8.1:+59327845 MS.gene067264:CDS
TTCTAGGACATCGTTTAGAT+CGG 0.426926 8.1:-59328008 None:intergenic
GTTCAGATCATCTATGTTAG+AGG 0.427003 8.1:-59328038 None:intergenic
ATCATCTATGTTAGAGGAAG+GGG 0.438239 8.1:-59328032 None:intergenic
GTTATTGTTGTATTCTCTCC+CGG 0.443926 8.1:+59327917 MS.gene067264:CDS
TGATATAGCTGAGGCTGAAA+AGG 0.444985 8.1:+59328084 MS.gene067264:CDS
AATCTTTCCATTCCTTAGGC+TGG 0.454254 8.1:-59328159 None:intergenic
AAAAGAGTAAGGTTTATTCC+CGG 0.457419 8.1:-59327936 None:intergenic
AATGTGACTTGTCTCGCCTC+TGG 0.460805 8.1:-59327827 None:intergenic
TCTAGGACATCGTTTAGATC+GGG 0.468128 8.1:-59328007 None:intergenic
TTCCTTAGGCTGGCTGAGTA+GGG 0.493210 8.1:-59328149 None:intergenic
CACATTCTCAAAGCGCCGAA+TGG 0.503482 8.1:+59327844 MS.gene067264:CDS
CTCGCAAAGGAGCCCGTGGT+TGG 0.507286 8.1:+59328253 MS.gene067264:CDS
TATGCTAAAAGAATACAAAT+CGG 0.512468 8.1:+59328126 MS.gene067264:CDS
CTAGGGTGGCCAAAAGAGTA+AGG 0.515417 8.1:-59327947 None:intergenic
AATGAATCTTTCCATTCCTT+AGG 0.516915 8.1:-59328163 None:intergenic
AGATTCATTAATGGAGCTCA+AGG 0.527990 8.1:+59328177 MS.gene067264:CDS
TGAGGCTGAAAAGGAAGATA+AGG 0.530489 8.1:+59328093 MS.gene067264:CDS
AACGAGCTTGCCATCTTGTG+TGG 0.537015 8.1:+59327884 MS.gene067264:CDS
GGCCCTACTCAGCCAGCCTA+AGG 0.543600 8.1:+59328147 MS.gene067264:CDS
AAAGAGTAAGGTTTATTCCC+GGG 0.547640 8.1:-59327935 None:intergenic
ACAATTAACTCATTATGGGT+CGG 0.550393 8.1:+59327774 None:intergenic
CTCCTTTGCGAGGAGCATCA+TGG 0.550709 8.1:-59328242 None:intergenic
TTATTGTTGTATTCTCTCCC+GGG 0.551946 8.1:+59327918 MS.gene067264:CDS
CAACCACGGGCTCCTTTGCG+AGG 0.553129 8.1:-59328252 None:intergenic
AGATCATCTATGTTAGAGGA+AGG 0.556275 8.1:-59328034 None:intergenic
GATCATCTATGTTAGAGGAA+GGG 0.557711 8.1:-59328033 None:intergenic
GACGCAATAGCATCAACACT+AGG 0.558461 8.1:-59327965 None:intergenic
AACCAAGTCACAGAAAAGAA+AGG 0.564249 8.1:+59328283 MS.gene067264:CDS
TACTCAGCCAGCCTAAGGAA+TGG 0.565385 8.1:+59328152 MS.gene067264:CDS
GCTCCTCGCAAAGGAGCCCG+TGG 0.600673 8.1:+59328249 MS.gene067264:CDS
GTCCATGATGCTCCTCGCAA+AGG 0.601271 8.1:+59328240 MS.gene067264:CDS
GGGTCGGCGCAAAATTGAGA+TGG 0.616384 8.1:+59327790 MS.gene067264:CDS
TCTGAACCAACAACATGAGA+AGG 0.616384 8.1:+59328054 MS.gene067264:CDS
ACGAGCTTGCCATCTTGTGT+GGG 0.628479 8.1:+59327885 MS.gene067264:CDS
GCGCAAAATTGAGATGGCGA+TGG 0.635830 8.1:+59327796 MS.gene067264:CDS
AAAGGAAGATAAGGCCAATG+AGG 0.641735 8.1:+59328102 MS.gene067264:CDS
ACGCAATAGCATCAACACTA+GGG 0.643020 8.1:-59327964 None:intergenic
CATTCTCAAAGCGCCGAATG+GGG 0.649352 8.1:+59327846 MS.gene067264:CDS
CAATAGCATCAACACTAGGG+TGG 0.685148 8.1:-59327961 None:intergenic
CCAACAACATGAGAAGGTGA+TGG 0.695579 8.1:+59328060 MS.gene067264:CDS
GGTGATGGCTGATATAGCTG+AGG 0.696275 8.1:+59328075 MS.gene067264:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGCTAAAAGAATACAAAT+CGG + chr8.1:59328126-59328145 MS.gene067264:CDS 20.0%
!!! GAATACAACAATAACAATTT+TGG - chr8.1:59327912-59327931 None:intergenic 20.0%
AAAAGAGTAAGGTTTATTCC+CGG - chr8.1:59327939-59327958 None:intergenic 30.0%
AATGAATCTTTCCATTCCTT+AGG - chr8.1:59328166-59328185 None:intergenic 30.0%
GGAATGGAAAGATTCATTAA+TGG + chr8.1:59328168-59328187 MS.gene067264:CDS 30.0%
! TTCTTTTAGCATATCCTCAT+TGG - chr8.1:59328119-59328138 None:intergenic 30.0%
!! TTGGTTTTTAATTCCAACCA+CGG - chr8.1:59328269-59328288 None:intergenic 30.0%
!!! CTTTTTTGAATAACCCCATT+CGG - chr8.1:59327862-59327881 None:intergenic 30.0%
AAAGAGTAAGGTTTATTCCC+GGG - chr8.1:59327938-59327957 None:intergenic 35.0%
AACCAAGTCACAGAAAAGAA+AGG + chr8.1:59328283-59328302 MS.gene067264:CDS 35.0%
AGATCATCTATGTTAGAGGA+AGG - chr8.1:59328037-59328056 None:intergenic 35.0%
AGATTCATTAATGGAGCTCA+AGG + chr8.1:59328177-59328196 MS.gene067264:CDS 35.0%
ATCATCTATGTTAGAGGAAG+GGG - chr8.1:59328035-59328054 None:intergenic 35.0%
ATTAATGGAGCTCAAGGATA+TGG + chr8.1:59328183-59328202 MS.gene067264:CDS 35.0%
GATCATCTATGTTAGAGGAA+GGG - chr8.1:59328036-59328055 None:intergenic 35.0%
GTTATTGTTGTATTCTCTCC+CGG + chr8.1:59327917-59327936 MS.gene067264:CDS 35.0%
GTTCAGATCATCTATGTTAG+AGG - chr8.1:59328041-59328060 None:intergenic 35.0%
TTATTGTTGTATTCTCTCCC+GGG + chr8.1:59327918-59327937 MS.gene067264:CDS 35.0%
! GGGAATAAACCTTACTCTTT+TGG + chr8.1:59327938-59327957 MS.gene067264:CDS 35.0%
! TTCCTTTCTTTTCTGTGACT+TGG - chr8.1:59328288-59328307 None:intergenic 35.0%
!! TGGTTTTTAATTCCAACCAC+GGG - chr8.1:59328268-59328287 None:intergenic 35.0%
!! TTCTAGGACATCGTTTAGAT+CGG - chr8.1:59328011-59328030 None:intergenic 35.0%
AAAGGAAGATAAGGCCAATG+AGG + chr8.1:59328102-59328121 MS.gene067264:CDS 40.0%
AATCTTTCCATTCCTTAGGC+TGG - chr8.1:59328162-59328181 None:intergenic 40.0%
ACGCAATAGCATCAACACTA+GGG - chr8.1:59327967-59327986 None:intergenic 40.0%
TCTGAACCAACAACATGAGA+AGG + chr8.1:59328054-59328073 MS.gene067264:CDS 40.0%
TGAGGCTGAAAAGGAAGATA+AGG + chr8.1:59328093-59328112 MS.gene067264:CDS 40.0%
TGATATAGCTGAGGCTGAAA+AGG + chr8.1:59328084-59328103 MS.gene067264:CDS 40.0%
! TCTAGGACATCGTTTAGATC+GGG - chr8.1:59328010-59328029 None:intergenic 40.0%
!! AATTTTGGTCCCACACAAGA+TGG - chr8.1:59327897-59327916 None:intergenic 40.0%
CAATAGCATCAACACTAGGG+TGG - chr8.1:59327964-59327983 None:intergenic 45.0%
CCAACAACATGAGAAGGTGA+TGG + chr8.1:59328060-59328079 MS.gene067264:CDS 45.0%
CCATCACCTTCTCATGTTGT+TGG - chr8.1:59328063-59328082 None:intergenic 45.0%
GACGCAATAGCATCAACACT+AGG - chr8.1:59327968-59327987 None:intergenic 45.0%
TGTTAGAGGAAGGGGTTTCT+AGG - chr8.1:59328027-59328046 None:intergenic 45.0%
!! ACATTCTCAAAGCGCCGAAT+GGG + chr8.1:59327845-59327864 MS.gene067264:CDS 45.0%
AACGAGCTTGCCATCTTGTG+TGG + chr8.1:59327884-59327903 MS.gene067264:CDS 50.0%
ACGAGCTTGCCATCTTGTGT+GGG + chr8.1:59327885-59327904 MS.gene067264:CDS 50.0%
CTAGGGTGGCCAAAAGAGTA+AGG - chr8.1:59327950-59327969 None:intergenic 50.0%
GCGCAAAATTGAGATGGCGA+TGG + chr8.1:59327796-59327815 MS.gene067264:CDS 50.0%
GGCGATGGTGAAAAAACCAG+AGG + chr8.1:59327811-59327830 MS.gene067264:CDS 50.0%
TACTCAGCCAGCCTAAGGAA+TGG + chr8.1:59328152-59328171 MS.gene067264:CDS 50.0%
! AATGTGACTTGTCTCGCCTC+TGG - chr8.1:59327830-59327849 None:intergenic 50.0%
! ATTCCTTAGGCTGGCTGAGT+AGG - chr8.1:59328153-59328172 None:intergenic 50.0%
! GGTGATGGCTGATATAGCTG+AGG + chr8.1:59328075-59328094 MS.gene067264:CDS 50.0%
! TTCCTTAGGCTGGCTGAGTA+GGG - chr8.1:59328152-59328171 None:intergenic 50.0%
!! CACATTCTCAAAGCGCCGAA+TGG + chr8.1:59327844-59327863 MS.gene067264:CDS 50.0%
!! CATTCTCAAAGCGCCGAATG+GGG + chr8.1:59327846-59327865 MS.gene067264:CDS 50.0%
GGGTCGGCGCAAAATTGAGA+TGG + chr8.1:59327790-59327809 MS.gene067264:CDS 55.0%
GTCCATGATGCTCCTCGCAA+AGG + chr8.1:59328240-59328259 MS.gene067264:CDS 55.0%
!! CTCCTTTGCGAGGAGCATCA+TGG - chr8.1:59328245-59328264 None:intergenic 55.0%
CAACCACGGGCTCCTTTGCG+AGG - chr8.1:59328255-59328274 None:intergenic 65.0%
CTCGCAAAGGAGCCCGTGGT+TGG + chr8.1:59328253-59328272 MS.gene067264:CDS 65.0%
GGCCCTACTCAGCCAGCCTA+AGG + chr8.1:59328147-59328166 MS.gene067264:CDS 65.0%
GCTCCTCGCAAAGGAGCCCG+TGG + chr8.1:59328249-59328268 MS.gene067264:CDS 70.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 59327788 59328315 59327788 ID=MS.gene067264
chr8.1 mRNA 59327788 59328315 59327788 ID=MS.gene067264.t1;Parent=MS.gene067264
chr8.1 exon 59327788 59328315 59327788 ID=MS.gene067264.t1.exon1;Parent=MS.gene067264.t1
chr8.1 CDS 59327788 59328315 59327788 ID=cds.MS.gene067264.t1;Parent=MS.gene067264.t1
Gene Sequence

>MS.gene067264

ATGGGTCGGCGCAAAATTGAGATGGCGATGGTGAAAAAACCAGAGGCGAGACAAGTCACATTCTCAAAGCGCCGAATGGGGTTATTCAAAAAAGCAAACGAGCTTGCCATCTTGTGTGGGACCAAAATTGTTATTGTTGTATTCTCTCCCGGGAATAAACCTTACTCTTTTGGCCACCCTAGTGTTGATGCTATTGCGTCTAAATTTCTTCAACAAGAGCCCGATCTAAACGATGTCCTAGAAACCCCTTCCTCTAACATAGATGATCTGAACCAACAACATGAGAAGGTGATGGCTGATATAGCTGAGGCTGAAAAGGAAGATAAGGCCAATGAGGATATGCTAAAAGAATACAAATCGGCCCTACTCAGCCAGCCTAAGGAATGGAAAGATTCATTAATGGAGCTCAAGGATATGGTAAAATCACGTCTTTGTGATTTAGATATATCACAGTCCATGATGCTCCTCGCAAAGGAGCCCGTGGTTGGAATTAAAAACCAAGTCACAGAAAAGAAAGGAAAATATTAA
Protein sequence

>MS.gene067264.t1

MGRRKIEMAMVKKPEARQVTFSKRRMGLFKKANELAILCGTKIVIVVFSPGNKPYSFGHPSVDAIASKFLQQEPDLNDVLETPSSNIDDLNQQHEKVMADIAEAEKEDKANEDMLKEYKSALLSQPKEWKDSLMELKDMVKSRLCDLDISQSMMLLAKEPVVGIKNQVTEKKGKY