Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067387.t1 | XP_003612667.1 | 89.8 | 235 | 21 | 2 | 3 | 237 | 2 | 233 | 6.30E-90 | 340.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067387.t1 | Q8S9H7 | 49.5 | 107 | 45 | 3 | 98 | 204 | 135 | 232 | 1.8e-16 | 87.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067387.t1 | G7K885 | 89.8 | 235 | 21 | 2 | 3 | 237 | 2 | 233 | 4.5e-90 | 340.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene067387.t1 | TF | MYB-related |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067387.t1 | MTR_5g027570 | 89.787 | 235 | 21 | 2 | 3 | 237 | 2 | 233 | 1.97e-147 | 410 |
MS.gene067387.t1 | MTR_5g088060 | 57.597 | 283 | 59 | 7 | 3 | 235 | 190 | 461 | 2.97e-87 | 266 |
MS.gene067387.t1 | MTR_5g488160 | 57.597 | 283 | 59 | 7 | 3 | 235 | 190 | 461 | 2.97e-87 | 266 |
MS.gene067387.t1 | MTR_5g088010 | 57.647 | 255 | 53 | 4 | 30 | 235 | 1 | 249 | 5.74e-84 | 250 |
MS.gene067387.t1 | MTR_5g027550 | 58.367 | 245 | 73 | 5 | 3 | 235 | 2 | 229 | 2.24e-83 | 248 |
MS.gene067387.t1 | MTR_1g111830 | 42.000 | 150 | 69 | 4 | 59 | 204 | 85 | 220 | 4.54e-26 | 102 |
MS.gene067387.t1 | MTR_5g081860 | 38.286 | 175 | 90 | 4 | 30 | 193 | 66 | 233 | 1.82e-24 | 98.2 |
MS.gene067387.t1 | MTR_4g111975 | 32.683 | 205 | 105 | 6 | 29 | 206 | 45 | 243 | 3.65e-24 | 98.2 |
MS.gene067387.t1 | MTR_8g063600 | 45.631 | 103 | 54 | 1 | 69 | 169 | 78 | 180 | 8.20e-24 | 97.1 |
MS.gene067387.t1 | MTR_7g067080 | 44.882 | 127 | 57 | 4 | 84 | 208 | 129 | 244 | 2.25e-23 | 96.3 |
MS.gene067387.t1 | MTR_3g462790 | 44.715 | 123 | 60 | 2 | 85 | 207 | 137 | 251 | 7.96e-23 | 94.7 |
MS.gene067387.t1 | MTR_5g069710 | 58.025 | 81 | 31 | 2 | 85 | 164 | 122 | 200 | 1.75e-22 | 93.6 |
MS.gene067387.t1 | MTR_8g063870 | 44.762 | 105 | 53 | 1 | 65 | 169 | 67 | 166 | 1.92e-22 | 93.2 |
MS.gene067387.t1 | MTR_4g100630 | 39.655 | 116 | 66 | 2 | 45 | 160 | 47 | 158 | 2.33e-22 | 93.6 |
MS.gene067387.t1 | MTR_2g100930 | 54.167 | 72 | 31 | 1 | 91 | 162 | 105 | 174 | 4.50e-21 | 90.5 |
MS.gene067387.t1 | MTR_3g104370 | 43.363 | 113 | 58 | 3 | 62 | 171 | 59 | 168 | 1.20e-20 | 87.4 |
MS.gene067387.t1 | MTR_1g048660 | 54.286 | 70 | 30 | 1 | 97 | 166 | 14 | 81 | 3.07e-19 | 79.7 |
MS.gene067387.t1 | MTR_6g092540 | 54.286 | 70 | 30 | 1 | 91 | 160 | 93 | 160 | 3.63e-19 | 84.3 |
MS.gene067387.t1 | MTR_5g037080 | 53.086 | 81 | 30 | 2 | 66 | 142 | 73 | 149 | 1.77e-18 | 82.8 |
MS.gene067387.t1 | MTR_8g101650 | 52.857 | 70 | 30 | 1 | 91 | 160 | 101 | 167 | 2.44e-18 | 82.0 |
MS.gene067387.t1 | MTR_4g107230 | 57.377 | 61 | 26 | 0 | 81 | 141 | 70 | 130 | 3.66e-18 | 81.6 |
MS.gene067387.t1 | MTR_4g015130 | 55.932 | 59 | 24 | 1 | 105 | 163 | 3 | 59 | 2.51e-16 | 72.0 |
MS.gene067387.t1 | MTR_1g083180 | 38.060 | 134 | 62 | 4 | 37 | 169 | 22 | 135 | 4.43e-16 | 73.9 |
MS.gene067387.t1 | MTR_5g075760 | 50.000 | 88 | 38 | 3 | 96 | 182 | 106 | 188 | 4.65e-16 | 74.7 |
MS.gene067387.t1 | MTR_0036s0260 | 40.506 | 79 | 45 | 1 | 95 | 173 | 28 | 104 | 1.27e-15 | 73.2 |
MS.gene067387.t1 | MTR_1g033620 | 54.839 | 62 | 26 | 1 | 110 | 171 | 20 | 79 | 1.31e-15 | 73.9 |
MS.gene067387.t1 | MTR_5g075790 | 39.024 | 123 | 65 | 4 | 65 | 182 | 79 | 196 | 1.41e-14 | 70.9 |
MS.gene067387.t1 | MTR_2g090305 | 41.772 | 79 | 44 | 1 | 95 | 173 | 28 | 104 | 2.97e-14 | 69.3 |
MS.gene067387.t1 | MTR_8g072990 | 46.269 | 67 | 36 | 0 | 90 | 156 | 95 | 161 | 3.22e-14 | 70.1 |
MS.gene067387.t1 | MTR_3g070110 | 44.444 | 99 | 45 | 4 | 96 | 187 | 96 | 191 | 3.01e-13 | 67.0 |
MS.gene067387.t1 | MTR_6g043490 | 42.857 | 77 | 41 | 1 | 92 | 165 | 104 | 180 | 3.31e-13 | 67.0 |
MS.gene067387.t1 | MTR_8g073050 | 39.726 | 73 | 44 | 0 | 90 | 162 | 98 | 170 | 1.33e-12 | 65.5 |
MS.gene067387.t1 | MTR_6g043480 | 44.118 | 68 | 35 | 1 | 90 | 154 | 102 | 169 | 1.37e-12 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067387.t1 | AT5G08520 | 45.161 | 124 | 54 | 2 | 60 | 171 | 71 | 192 | 2.25e-26 | 103 |
MS.gene067387.t1 | AT3G10580 | 33.690 | 187 | 99 | 6 | 22 | 206 | 39 | 202 | 2.98e-24 | 97.4 |
MS.gene067387.t1 | AT5G23650 | 39.264 | 163 | 86 | 4 | 55 | 217 | 83 | 232 | 6.83e-24 | 98.2 |
MS.gene067387.t1 | AT5G04760 | 54.217 | 83 | 36 | 1 | 80 | 162 | 84 | 164 | 6.89e-24 | 95.5 |
MS.gene067387.t1 | AT3G10580 | 33.690 | 187 | 99 | 6 | 22 | 206 | 39 | 202 | 8.78e-24 | 97.1 |
MS.gene067387.t1 | AT5G58900 | 61.333 | 75 | 26 | 2 | 91 | 164 | 137 | 209 | 3.25e-23 | 95.5 |
MS.gene067387.t1 | AT1G49010 | 51.163 | 86 | 39 | 2 | 87 | 171 | 126 | 209 | 4.24e-23 | 95.5 |
MS.gene067387.t1 | AT2G38090 | 54.878 | 82 | 34 | 2 | 84 | 164 | 130 | 209 | 1.30e-21 | 91.3 |
MS.gene067387.t1 | AT3G11280 | 41.538 | 130 | 68 | 3 | 83 | 206 | 115 | 242 | 1.47e-21 | 90.5 |
MS.gene067387.t1 | AT3G11280 | 41.538 | 130 | 68 | 3 | 83 | 206 | 115 | 242 | 1.47e-21 | 90.5 |
MS.gene067387.t1 | AT5G47390 | 47.475 | 99 | 45 | 3 | 84 | 181 | 89 | 181 | 3.66e-21 | 90.9 |
MS.gene067387.t1 | AT5G61620 | 46.154 | 130 | 46 | 6 | 84 | 205 | 101 | 214 | 4.34e-21 | 90.1 |
MS.gene067387.t1 | AT5G01200 | 57.333 | 75 | 29 | 2 | 91 | 164 | 142 | 214 | 1.15e-20 | 88.2 |
MS.gene067387.t1 | AT5G05790 | 52.273 | 88 | 36 | 2 | 83 | 166 | 119 | 204 | 1.22e-19 | 85.5 |
MS.gene067387.t1 | AT5G05790 | 52.273 | 88 | 36 | 2 | 83 | 166 | 119 | 204 | 1.22e-19 | 85.5 |
MS.gene067387.t1 | AT5G56840 | 52.857 | 70 | 32 | 1 | 91 | 160 | 87 | 155 | 1.37e-18 | 82.0 |
MS.gene067387.t1 | AT3G16350 | 54.054 | 74 | 32 | 2 | 70 | 142 | 112 | 184 | 3.54e-18 | 82.8 |
MS.gene067387.t1 | AT1G19000 | 53.247 | 77 | 30 | 2 | 65 | 141 | 78 | 148 | 7.97e-18 | 80.9 |
MS.gene067387.t1 | AT1G19000 | 53.247 | 77 | 30 | 2 | 65 | 141 | 78 | 148 | 7.97e-18 | 80.9 |
MS.gene067387.t1 | AT1G70000 | 43.810 | 105 | 51 | 3 | 42 | 142 | 45 | 145 | 8.79e-18 | 80.1 |
MS.gene067387.t1 | AT1G70000 | 43.810 | 105 | 51 | 3 | 42 | 142 | 45 | 145 | 8.79e-18 | 80.1 |
MS.gene067387.t1 | AT1G74840 | 53.947 | 76 | 31 | 1 | 66 | 141 | 71 | 142 | 1.74e-17 | 79.0 |
MS.gene067387.t1 | AT1G74840 | 53.947 | 76 | 31 | 1 | 66 | 141 | 71 | 142 | 2.05e-17 | 79.3 |
MS.gene067387.t1 | AT4G09450 | 51.351 | 74 | 34 | 1 | 90 | 163 | 86 | 157 | 4.88e-17 | 77.0 |
MS.gene067387.t1 | AT3G10590 | 42.708 | 96 | 51 | 2 | 69 | 163 | 84 | 176 | 4.94e-15 | 71.6 |
Find 42 sgRNAs with CRISPR-Local
Find 81 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTCTACATCTTTCACATTT+TGG | 0.117923 | 5.2:-18338095 | None:intergenic |
TGAGAAGATGCGCGACTTAT+TGG | 0.189075 | 5.2:+18338338 | MS.gene067387:CDS |
TGTGATGTATAGGTTGTTTC+TGG | 0.210646 | 5.2:+18337963 | MS.gene067387:intron |
TCCAATCGGTTCTACAATTC+CGG | 0.270420 | 5.2:+18338302 | MS.gene067387:CDS |
TTAGCTTCATTACTTCCTTC+AGG | 0.334459 | 5.2:-18337133 | None:intergenic |
TTCTCAAGTTTCTCTATATC+CGG | 0.389268 | 5.2:-18338321 | None:intergenic |
GCATGGCTAGCTATTTGAAT+TGG | 0.389834 | 5.2:-18338054 | None:intergenic |
AGATATTTCAAAAGAATTTG+TGG | 0.448838 | 5.2:+18338020 | MS.gene067387:CDS |
TGGAAGGAATCTCATCTTGT+TGG | 0.451198 | 5.2:-18338191 | None:intergenic |
TTGTGCTTGCTTTGTCCAAT+CGG | 0.452519 | 5.2:+18338288 | MS.gene067387:CDS |
AATGAGCGGACTTCAATTCA+AGG | 0.465890 | 5.2:+18336986 | MS.gene067387:CDS |
CAAAGAGAGGGCGTAGGGAA+AGG | 0.497543 | 5.2:+18337197 | MS.gene067387:CDS |
AAAGAGAGGGCGTAGGGAAA+GGG | 0.499642 | 5.2:+18337198 | MS.gene067387:CDS |
TGTTATAGGAACATGGAAGA+AGG | 0.512958 | 5.2:+18336926 | None:intergenic |
GGAAGTAATGAAGCTAACTT+AGG | 0.518501 | 5.2:+18337139 | MS.gene067387:CDS |
GACACAAGCTTAAACAAGAA+TGG | 0.520303 | 5.2:+18338144 | MS.gene067387:CDS |
ATGTGAAAGATGTAGAGAAG+AGG | 0.526828 | 5.2:+18338100 | MS.gene067387:CDS |
ATGTATAGGTTGTTTCTGGA+GGG | 0.542704 | 5.2:+18337967 | MS.gene067387:intron |
GTCTGTTGCATTCCTTGAGG+AGG | 0.550846 | 5.2:-18338234 | None:intergenic |
TGTTCCATGCTATTCTCAGA+GGG | 0.555847 | 5.2:-18337010 | None:intergenic |
TTGTTCCATGCTATTCTCAG+AGG | 0.560192 | 5.2:-18337011 | None:intergenic |
TAGGGAAAGGGTACATTGGA+CGG | 0.560493 | 5.2:+18337210 | MS.gene067387:CDS |
TCCGGAATTGTAGAACCGAT+TGG | 0.561152 | 5.2:-18338303 | None:intergenic |
TGTATAGGTTGTTTCTGGAG+GGG | 0.562950 | 5.2:+18337968 | MS.gene067387:intron |
GTGAAGCAAAGAGAGGGCGT+AGG | 0.568855 | 5.2:+18337191 | MS.gene067387:CDS |
TTCATTAGAGTTTAGCATTG+CGG | 0.571002 | 5.2:-18337083 | None:intergenic |
GGCGTAGGGAAAGGGTACAT+TGG | 0.572735 | 5.2:+18337206 | MS.gene067387:CDS |
CAAAATGAAACTCCTCCTCA+AGG | 0.584892 | 5.2:+18338222 | MS.gene067387:CDS |
GGACAAAGCAAGCACAACAT+TGG | 0.587274 | 5.2:-18338282 | None:intergenic |
GAAAGGGTACATTGGACGGA+AGG | 0.588233 | 5.2:+18337214 | MS.gene067387:CDS |
TGAAGCAAAGAGAGGGCGTA+GGG | 0.595570 | 5.2:+18337192 | MS.gene067387:CDS |
CAAGCTGAGTCAGTACAAGA+AGG | 0.604309 | 5.2:+18337163 | MS.gene067387:CDS |
GATGTATAGGTTGTTTCTGG+AGG | 0.607647 | 5.2:+18337966 | MS.gene067387:intron |
CAAGCTGAGTCAGTACCTGA+AGG | 0.616539 | 5.2:+18337118 | MS.gene067387:CDS |
CGACACTGATGTCATTGAGT+CGG | 0.619037 | 5.2:+18337051 | MS.gene067387:CDS |
ATCATATCGATTTAAATGAG+CGG | 0.624082 | 5.2:+18336972 | MS.gene067387:CDS |
TCATTTAAATCGATATGATG+AGG | 0.628741 | 5.2:-18336968 | None:intergenic |
GGAAGTCGTGAAGCAAAGAG+AGG | 0.632062 | 5.2:+18337184 | MS.gene067387:CDS |
AGGTCCCTCTGAGAATAGCA+TGG | 0.632380 | 5.2:+18337006 | MS.gene067387:CDS |
GAAGTCGTGAAGCAAAGAGA+GGG | 0.647998 | 5.2:+18337185 | MS.gene067387:CDS |
ATTAGAGTTTAGCATTGCGG+CGG | 0.651248 | 5.2:-18337080 | None:intergenic |
TGTGTCTGTTGCATTCCTTG+AGG | 0.673315 | 5.2:-18338237 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAGAATTGAAAAAAAAAATA+TGG | - | chr5.2:18337468-18337487 | None:intergenic | 10.0% |
!!! | TACAAATATAAATTTTGTTT+TGG | + | chr5.2:18337330-18337349 | MS.gene067387:intron | 10.0% |
!!! | TTTTTTTTCAATTCTATTTT+AGG | + | chr5.2:18337472-18337491 | MS.gene067387:intron | 10.0% |
!! | AAAAATATATATAACTTCCA+AGG | - | chr5.2:18337266-18337285 | None:intergenic | 15.0% |
!! | AAATGTAAATACATATCAAT+TGG | - | chr5.2:18337680-18337699 | None:intergenic | 15.0% |
!! | AAGAAAAAAAAATCAATTCA+AGG | + | chr5.2:18337848-18337867 | MS.gene067387:intron | 15.0% |
!! | AGAAAAAAAAATCAATTCAA+GGG | + | chr5.2:18337849-18337868 | MS.gene067387:intron | 15.0% |
!!! | TGGAAGTTATATATATTTTT+TGG | + | chr5.2:18337266-18337285 | MS.gene067387:intron | 15.0% |
!! | AGATATTTCAAAAGAATTTG+TGG | + | chr5.2:18338020-18338039 | MS.gene067387:CDS | 20.0% |
!!! | AAAAACTTAGTTGTTTTGAA+TGG | + | chr5.2:18337403-18337422 | MS.gene067387:intron | 20.0% |
!!! | TTCTATAATTTGTGATGTAT+AGG | + | chr5.2:18337953-18337972 | MS.gene067387:intron | 20.0% |
! | AGATGCAAATTAATCTTTCT+AGG | + | chr5.2:18337804-18337823 | MS.gene067387:intron | 25.0% |
! | TCATTTAAATCGATATGATG+AGG | - | chr5.2:18336971-18336990 | None:intergenic | 25.0% |
!!! | ATCATATCGATTTAAATGAG+CGG | + | chr5.2:18336972-18336991 | MS.gene067387:CDS | 25.0% |
!!! | TTGGTGGATAAAGTATTTTT+GGG | - | chr5.2:18338079-18338098 | None:intergenic | 25.0% |
!!! | TTTGGTGGATAAAGTATTTT+TGG | - | chr5.2:18338080-18338099 | None:intergenic | 25.0% |
GTAAGTATTCAATCTATCCT+TGG | + | chr5.2:18337246-18337265 | MS.gene067387:intron | 30.0% | |
TTCATTAGAGTTTAGCATTG+CGG | - | chr5.2:18337086-18337105 | None:intergenic | 30.0% | |
TTCTCAAGTTTCTCTATATC+CGG | - | chr5.2:18338324-18338343 | None:intergenic | 30.0% | |
! | CATATCAATTGGTAGTTACA+AGG | - | chr5.2:18337669-18337688 | None:intergenic | 30.0% |
! | TCTCTACATCTTTCACATTT+TGG | - | chr5.2:18338098-18338117 | None:intergenic | 30.0% |
AAAAATATGGTAAGGGACGT+TGG | + | chr5.2:18337995-18338014 | MS.gene067387:CDS | 35.0% | |
AATGTTAACTAGTGTCCCAA+GGG | - | chr5.2:18337439-18337458 | None:intergenic | 35.0% | |
ATGTGAAAGATGTAGAGAAG+AGG | + | chr5.2:18338100-18338119 | MS.gene067387:CDS | 35.0% | |
GACACAAGCTTAAACAAGAA+TGG | + | chr5.2:18338144-18338163 | MS.gene067387:CDS | 35.0% | |
GGAAGTAATGAAGCTAACTT+AGG | + | chr5.2:18337139-18337158 | MS.gene067387:CDS | 35.0% | |
GGGCTAGAAAAATATGGTAA+GGG | + | chr5.2:18337988-18338007 | MS.gene067387:CDS | 35.0% | |
TAATGTTAACTAGTGTCCCA+AGG | - | chr5.2:18337440-18337459 | None:intergenic | 35.0% | |
TTAGCTTCATTACTTCCTTC+AGG | - | chr5.2:18337136-18337155 | None:intergenic | 35.0% | |
! | AGTTTCATTTTGCTGCTCAA+TGG | - | chr5.2:18338214-18338233 | None:intergenic | 35.0% |
! | CTACATCTTTCACATTTTGG+TGG | - | chr5.2:18338095-18338114 | None:intergenic | 35.0% |
! | TCAAGGGTTTGCATTGTTTT+GGG | + | chr5.2:18337865-18337884 | MS.gene067387:intron | 35.0% |
! | TGTGATGTATAGGTTGTTTC+TGG | + | chr5.2:18337963-18337982 | MS.gene067387:intron | 35.0% |
! | TTCAAGGGTTTGCATTGTTT+TGG | + | chr5.2:18337864-18337883 | MS.gene067387:intron | 35.0% |
!! | ATGTATAGGTTGTTTCTGGA+GGG | + | chr5.2:18337967-18337986 | MS.gene067387:intron | 35.0% |
!!! | GGATAAAGTATTTTTGGGCA+TGG | - | chr5.2:18338074-18338093 | None:intergenic | 35.0% |
AATGGTTAACCAATGCCCTT+GGG | + | chr5.2:18337421-18337440 | MS.gene067387:intron | 40.0% | |
AGTGACTAGACACTCAACTT+TGG | + | chr5.2:18337600-18337619 | MS.gene067387:intron | 40.0% | |
ATTAGAGTTTAGCATTGCGG+CGG | - | chr5.2:18337083-18337102 | None:intergenic | 40.0% | |
ATTCCTTAACCATTGCCCTA+AGG | - | chr5.2:18337309-18337328 | None:intergenic | 40.0% | |
CAAAATGAAACTCCTCCTCA+AGG | + | chr5.2:18338222-18338241 | MS.gene067387:CDS | 40.0% | |
CAAGGATGTTGATCTACATG+CGG | - | chr5.2:18337651-18337670 | None:intergenic | 40.0% | |
GGGGCTAGAAAAATATGGTA+AGG | + | chr5.2:18337987-18338006 | MS.gene067387:CDS | 40.0% | |
TGGAAGGAATCTCATCTTGT+TGG | - | chr5.2:18338194-18338213 | None:intergenic | 40.0% | |
TGTTCCATGCTATTCTCAGA+GGG | - | chr5.2:18337013-18337032 | None:intergenic | 40.0% | |
TTCCTTAACCATTGCCCTAA+GGG | - | chr5.2:18337308-18337327 | None:intergenic | 40.0% | |
TTGTGCTTGCTTTGTCCAAT+CGG | + | chr5.2:18338288-18338307 | MS.gene067387:CDS | 40.0% | |
TTGTTCCATGCTATTCTCAG+AGG | - | chr5.2:18337014-18337033 | None:intergenic | 40.0% | |
! | AATGAGCGGACTTCAATTCA+AGG | + | chr5.2:18336986-18337005 | MS.gene067387:CDS | 40.0% |
! | GCATGGCTAGCTATTTGAAT+TGG | - | chr5.2:18338057-18338076 | None:intergenic | 40.0% |
! | TCATTTTGCTGCTCAATGGA+AGG | - | chr5.2:18338210-18338229 | None:intergenic | 40.0% |
! | TCCAATCGGTTCTACAATTC+CGG | + | chr5.2:18338302-18338321 | MS.gene067387:CDS | 40.0% |
!! | GATGTATAGGTTGTTTCTGG+AGG | + | chr5.2:18337966-18337985 | MS.gene067387:intron | 40.0% |
!! | TGTATAGGTTGTTTCTGGAG+GGG | + | chr5.2:18337968-18337987 | MS.gene067387:intron | 40.0% |
CAAGCTGAGTCAGTACAAGA+AGG | + | chr5.2:18337163-18337182 | MS.gene067387:CDS | 45.0% | |
CGACACTGATGTCATTGAGT+CGG | + | chr5.2:18337051-18337070 | MS.gene067387:CDS | 45.0% | |
CTGGAGGGGCTAGAAAAATA+TGG | + | chr5.2:18337982-18338001 | MS.gene067387:CDS | 45.0% | |
GAAGTCGTGAAGCAAAGAGA+GGG | + | chr5.2:18337185-18337204 | MS.gene067387:CDS | 45.0% | |
GAATGGTTAACCAATGCCCT+TGG | + | chr5.2:18337420-18337439 | MS.gene067387:intron | 45.0% | |
GGACAAAGCAAGCACAACAT+TGG | - | chr5.2:18338285-18338304 | None:intergenic | 45.0% | |
TCCGGAATTGTAGAACCGAT+TGG | - | chr5.2:18338306-18338325 | None:intergenic | 45.0% | |
TGAGAAGATGCGCGACTTAT+TGG | + | chr5.2:18338338-18338357 | MS.gene067387:CDS | 45.0% | |
TGTGTCTGTTGCATTCCTTG+AGG | - | chr5.2:18338240-18338259 | None:intergenic | 45.0% | |
! | TAGGGAAAGGGTACATTGGA+CGG | + | chr5.2:18337210-18337229 | MS.gene067387:CDS | 45.0% |
CAAGCTGAGTCAGTACCTGA+AGG | + | chr5.2:18337118-18337137 | MS.gene067387:CDS | 50.0% | |
GGAAGTCGTGAAGCAAAGAG+AGG | + | chr5.2:18337184-18337203 | MS.gene067387:CDS | 50.0% | |
GTCTGTTGCATTCCTTGAGG+AGG | - | chr5.2:18338237-18338256 | None:intergenic | 50.0% | |
TGCCCTTAGGGCAATGGTTA+AGG | + | chr5.2:18337303-18337322 | MS.gene067387:intron | 50.0% | |
! | AAAGAGAGGGCGTAGGGAAA+GGG | + | chr5.2:18337198-18337217 | MS.gene067387:CDS | 50.0% |
! | AACTAGTGTCCCAAGGGCAT+TGG | - | chr5.2:18337433-18337452 | None:intergenic | 50.0% |
! | AGGTCCCTCTGAGAATAGCA+TGG | + | chr5.2:18337006-18337025 | MS.gene067387:CDS | 50.0% |
! | GAAAGGGTACATTGGACGGA+AGG | + | chr5.2:18337214-18337233 | MS.gene067387:CDS | 50.0% |
! | TGAAGCAAAGAGAGGGCGTA+GGG | + | chr5.2:18337192-18337211 | MS.gene067387:CDS | 50.0% |
AACCAGTGCCCTTAGGGCAA+TGG | + | chr5.2:18337297-18337316 | MS.gene067387:intron | 55.0% | |
CTTGCCAACCAGTGCCCTTA+GGG | + | chr5.2:18337291-18337310 | MS.gene067387:intron | 55.0% | |
TCTTGCCAACCAGTGCCCTT+AGG | + | chr5.2:18337290-18337309 | MS.gene067387:intron | 55.0% | |
! | AACCATTGCCCTAAGGGCAC+TGG | - | chr5.2:18337302-18337321 | None:intergenic | 55.0% |
! | CAAAGAGAGGGCGTAGGGAA+AGG | + | chr5.2:18337197-18337216 | MS.gene067387:CDS | 55.0% |
! | GGCGTAGGGAAAGGGTACAT+TGG | + | chr5.2:18337206-18337225 | MS.gene067387:CDS | 55.0% |
! | GTGAAGCAAAGAGAGGGCGT+AGG | + | chr5.2:18337191-18337210 | MS.gene067387:CDS | 55.0% |
!! | ATTGCCCTAAGGGCACTGGT+TGG | - | chr5.2:18337298-18337317 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 18336938 | 18338380 | 18336938 | ID=MS.gene067387 |
chr5.2 | mRNA | 18336938 | 18338380 | 18336938 | ID=MS.gene067387.t1;Parent=MS.gene067387 |
chr5.2 | exon | 18336938 | 18337245 | 18336938 | ID=MS.gene067387.t1.exon1;Parent=MS.gene067387.t1 |
chr5.2 | CDS | 18336938 | 18337245 | 18336938 | ID=cds.MS.gene067387.t1;Parent=MS.gene067387.t1 |
chr5.2 | exon | 18337975 | 18338380 | 18337975 | ID=MS.gene067387.t1.exon2;Parent=MS.gene067387.t1 |
chr5.2 | CDS | 18337975 | 18338380 | 18337975 | ID=cds.MS.gene067387.t1;Parent=MS.gene067387.t1 |
Gene Sequence |
Protein sequence |