AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene067388

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene067388.t1 MTR_5g027570 70.667 225 47 4 119 328 11 231 1.66e-99 293
MS.gene067388.t1 MTR_5g088060 44.805 462 84 15 25 328 13 461 3.04e-90 277
MS.gene067388.t1 MTR_5g488160 44.805 462 84 15 25 328 13 461 3.04e-90 277
MS.gene067388.t1 MTR_5g027550 62.128 235 48 6 119 328 11 229 1.15e-80 245
MS.gene067388.t1 MTR_5g088010 51.751 257 51 6 137 328 1 249 3.52e-69 216
MS.gene067388.t1 MTR_5g027780 73.188 138 27 1 25 152 36 173 3.33e-62 196
MS.gene067388.t1 MTR_5g027770 50.226 221 43 6 1 205 1 170 2.06e-47 162
MS.gene067388.t1 MTR_5g027770 58.915 129 17 1 26 118 171 299 7.33e-38 137
MS.gene067388.t1 MTR_5g088200 48.936 188 21 5 1 118 1 183 1.70e-40 151
MS.gene067388.t1 MTR_5g088005 57.576 132 29 3 1 118 1 119 5.86e-34 122
MS.gene067388.t1 MTR_8g063600 54.118 85 38 1 195 279 100 183 3.73e-23 97.4
MS.gene067388.t1 MTR_3g462790 41.007 139 66 3 145 282 104 227 4.48e-23 97.8
MS.gene067388.t1 MTR_4g100630 36.424 151 76 5 151 297 47 181 4.75e-22 95.1
MS.gene067388.t1 MTR_5g081860 54.651 86 38 1 191 275 115 200 9.37e-22 93.2
MS.gene067388.t1 MTR_1g111830 40.769 130 71 3 169 295 89 215 1.18e-21 92.4
MS.gene067388.t1 MTR_5g069710 51.042 96 44 2 191 285 122 215 3.28e-21 92.4
MS.gene067388.t1 MTR_2g100930 46.535 101 50 2 193 291 99 197 3.35e-21 93.2
MS.gene067388.t1 MTR_4g111975 50.602 83 38 2 194 275 131 211 5.14e-21 91.7
MS.gene067388.t1 MTR_8g063870 55.128 78 34 1 202 279 93 169 9.01e-21 90.5
MS.gene067388.t1 MTR_7g067080 52.500 80 36 1 190 269 129 206 3.92e-20 89.4
MS.gene067388.t1 MTR_4g107230 43.802 121 58 4 184 303 66 177 6.54e-19 85.5
MS.gene067388.t1 MTR_1g048660 53.425 73 32 1 203 275 14 84 7.90e-19 80.5
MS.gene067388.t1 MTR_3g104370 43.956 91 43 2 203 285 93 183 1.98e-17 80.5
MS.gene067388.t1 MTR_8g101650 52.857 70 30 1 197 266 101 167 2.65e-17 80.9
MS.gene067388.t1 MTR_6g092540 52.857 70 31 1 197 266 93 160 3.35e-17 80.9
MS.gene067388.t1 MTR_5g037080 52.000 75 33 1 177 248 75 149 1.88e-16 79.0
MS.gene067388.t1 MTR_5g075760 46.392 97 43 5 194 287 97 187 4.49e-16 76.3
MS.gene067388.t1 MTR_4g015130 49.275 69 32 2 211 278 3 69 1.21e-15 71.6
MS.gene067388.t1 MTR_5g075790 38.655 119 61 5 175 287 83 195 1.56e-15 75.1
MS.gene067388.t1 MTR_1g083180 48.718 78 34 3 200 274 60 134 1.16e-14 71.6
MS.gene067388.t1 MTR_0036s0260 44.928 69 36 1 203 271 30 96 2.51e-14 71.2
MS.gene067388.t1 MTR_2g090305 46.377 69 35 1 203 271 30 96 3.85e-14 70.5
MS.gene067388.t1 MTR_1g033620 54.098 61 25 2 216 275 20 78 6.38e-14 70.9
MS.gene067388.t1 MTR_3g070110 51.389 72 30 1 202 268 96 167 2.03e-13 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene067388.t1 AT5G08520 47.525 101 51 1 168 268 85 183 3.27e-24 100
MS.gene067388.t1 AT1G49010 50.549 91 42 2 193 282 126 214 3.30e-22 95.5
MS.gene067388.t1 AT5G58900 54.762 84 35 2 188 270 128 209 5.73e-22 94.4
MS.gene067388.t1 AT5G23650 44.444 117 60 2 161 277 83 194 7.89e-22 94.7
MS.gene067388.t1 AT5G04760 51.807 83 38 1 186 268 84 164 1.05e-21 92.0
MS.gene067388.t1 AT2G38090 47.748 111 49 4 171 274 105 213 1.29e-21 93.6
MS.gene067388.t1 AT5G05790 47.475 99 49 2 186 283 116 212 3.18e-20 89.4
MS.gene067388.t1 AT5G05790 47.475 99 49 2 186 283 116 212 3.18e-20 89.4
MS.gene067388.t1 AT3G11280 51.111 90 38 2 187 272 113 200 8.23e-20 87.8
MS.gene067388.t1 AT3G11280 51.111 90 38 2 187 272 113 200 8.23e-20 87.8
MS.gene067388.t1 AT5G01200 53.846 78 33 2 194 270 139 214 1.46e-19 87.0
MS.gene067388.t1 AT5G61620 51.136 88 33 2 203 282 110 195 6.71e-19 86.3
MS.gene067388.t1 AT5G47390 50.000 74 35 1 193 266 88 159 1.63e-18 85.5
MS.gene067388.t1 AT3G10580 42.857 98 49 3 185 280 77 169 1.71e-18 84.0
MS.gene067388.t1 AT3G10580 42.857 98 49 3 185 280 77 169 2.30e-18 84.3
MS.gene067388.t1 AT5G56840 54.286 70 31 1 197 266 87 155 3.83e-17 79.7
MS.gene067388.t1 AT1G74840 56.250 64 28 0 184 247 79 142 5.22e-17 79.3
MS.gene067388.t1 AT1G74840 56.250 64 28 0 184 247 79 142 5.59e-17 79.7
MS.gene067388.t1 AT3G16350 49.315 73 37 0 176 248 112 184 2.89e-16 79.3
MS.gene067388.t1 AT1G70000 59.322 59 21 1 193 248 87 145 5.28e-16 77.0
MS.gene067388.t1 AT1G70000 59.322 59 21 1 193 248 87 145 5.28e-16 77.0
MS.gene067388.t1 AT3G10590 30.769 208 97 7 93 289 22 193 9.18e-16 75.1
MS.gene067388.t1 AT4G09450 55.224 67 28 1 203 269 93 157 1.29e-15 74.7
MS.gene067388.t1 AT1G19000 47.191 89 37 3 159 247 70 148 2.03e-15 75.9
MS.gene067388.t1 AT1G19000 47.191 89 37 3 159 247 70 148 2.03e-15 75.9

Find 82 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCTGTATCTTTCACATTT+TGG 0.106986 5.2:-18363714 None:intergenic
TGATGTGTCATTCTTGTTTA+AGG 0.162194 5.2:-18363770 None:intergenic
TGTGATATATAGGTTGTTTC+TGG 0.162888 5.2:+18363582 MS.gene067388:intron
TCAACATGATTCTTAGGTTT+TGG 0.214289 5.2:-18362157 None:intergenic
ACATTCTCAACATGATTCTT+AGG 0.253797 5.2:-18362163 None:intergenic
CTCCTAAGAAAAGCAATTCT+TGG 0.283841 5.2:+18362044 MS.gene067388:CDS
TTCTCAAGTTTGTTCATATC+AGG 0.295923 5.2:-18363892 None:intergenic
TATGCTTTCCCACCTGGTTC+AGG 0.329227 5.2:+18362277 MS.gene067388:CDS
TTTGCTTCACGACTTCCTTC+TGG 0.354439 5.2:-18362988 None:intergenic
GCGCAACTTGTTCAACTTGT+TGG 0.354873 5.2:+18363918 MS.gene067388:CDS
CCTGCATATGCTTTCCCACC+TGG 0.358776 5.2:+18362271 MS.gene067388:CDS
GATGTTCCTGTGTTGGTTGT+TGG 0.372353 5.2:+18362097 MS.gene067388:CDS
TGCTATGCTCAGAGGGATCT+TGG 0.382368 5.2:-18362816 None:intergenic
CGAACATTGCGCTTGGGGCC+TGG 0.387615 5.2:-18362217 None:intergenic
CCTACTGCCACCGGGGATAT+AGG 0.422509 5.2:-18362328 None:intergenic
GGCTTAGGATTCGCACCATT+CGG 0.427062 5.2:-18362307 None:intergenic
GGATTCGCACCATTCGGATA+AGG 0.434047 5.2:-18362301 None:intergenic
ACAGGACGAACATTGCGCTT+GGG 0.437958 5.2:-18362223 None:intergenic
GAACAACAACAGGAGAAAAC+TGG 0.441684 5.2:+18362841 MS.gene067388:CDS
CACATCAGTCACTGCTCCTA+TGG 0.448672 5.2:+18363786 MS.gene067388:CDS
AGATATTTCAAAAGAATTTG+TGG 0.448838 5.2:+18363639 MS.gene067388:CDS
CACCTTGTCCTACTGCCACC+GGG 0.457271 5.2:-18362336 None:intergenic
AACTTAGTTCAAGCTGAGTC+AGG 0.458703 5.2:+18362919 MS.gene067388:CDS
CACAGGACGAACATTGCGCT+TGG 0.470103 5.2:-18362224 None:intergenic
ATGACCCGACTCACTGATAT+CGG 0.474612 5.2:-18362866 None:intergenic
GAGGGATCTTGGACTGAAGC+TGG 0.485915 5.2:-18362805 None:intergenic
GCATAGCATGGAACAACAAC+AGG 0.485938 5.2:+18362831 MS.gene067388:CDS
TTGGTGCTGCTCTGTCCAAT+CGG 0.496082 5.2:+18363859 MS.gene067388:CDS
AAAGAGAAGGCGTAGGGAAA+GGG 0.499642 5.2:+18363008 MS.gene067388:CDS
TGATAGCGTGGTGATGCCAC+AGG 0.503741 5.2:-18362190 None:intergenic
CTTGAGGTGGCTGTGTCTTG+AGG 0.504065 5.2:-18363826 None:intergenic
GGATTCTCATGTTGTTCCAT+AGG 0.504821 5.2:-18363802 None:intergenic
GGCACCGATATCAGTGAGTC+GGG 0.505895 5.2:+18362862 MS.gene067388:CDS
ATATATAGGTTGTTTCTGGA+GGG 0.506208 5.2:+18363586 MS.gene067388:intron
CACCAACTGCATTTGTCTTG+AGG 0.508085 5.2:-18363842 None:intergenic
TCACCTTGTCCTACTGCCAC+CGG 0.510310 5.2:-18362337 None:intergenic
TATATAGGTTGTTTCTGGAG+GGG 0.512969 5.2:+18363587 MS.gene067388:intron
CAAAGAGAAGGCGTAGGGAA+AGG 0.516592 5.2:+18363007 MS.gene067388:CDS
ATGTGAGTTGGAGGTGCCAC+AGG 0.521985 5.2:-18362241 None:intergenic
GCATGGCTAGCAATTTGAGT+TGG 0.525594 5.2:-18363673 None:intergenic
AGAAAGAGCTGGCCAAGACT+TGG 0.528166 5.2:-18362122 None:intergenic
GATATATAGGTTGTTTCTGG+AGG 0.531218 5.2:+18363585 MS.gene067388:intron
CAGGACGAACATTGCGCTTG+GGG 0.533224 5.2:-18362222 None:intergenic
CAAGCTGAGTCAGGAGCAGA+AGG 0.534197 5.2:+18362928 MS.gene067388:CDS
TGTTCCATGCTATGCTCAGA+GGG 0.536332 5.2:-18362823 None:intergenic
CCTATATCCCCGGTGGCAGT+AGG 0.543855 5.2:+18362328 MS.gene067388:CDS
CAACTGCATTTGTCTTGAGG+TGG 0.545901 5.2:-18363839 None:intergenic
GCAGGAACAGCAATGTGAGT+TGG 0.551521 5.2:-18362253 None:intergenic
TGGTTGTTGGAACCAAGTCT+TGG 0.553347 5.2:+18362110 MS.gene067388:CDS
GCCACCGGGGATATAGGCTT+AGG 0.555820 5.2:-18362322 None:intergenic
TTCGGATAAGGTCCTGAACC+AGG 0.561660 5.2:-18362289 None:intergenic
TCACCACGCTATCAAAAGCC+AGG 0.565310 5.2:+18362199 MS.gene067388:CDS
TTGTTCCATGCTATGCTCAG+AGG 0.567759 5.2:-18362824 None:intergenic
CACCTCAAGACAAATGCAGT+TGG 0.567812 5.2:+18363840 MS.gene067388:CDS
CAAGCGCAATGTTCGTCCTG+TGG 0.574699 5.2:+18362225 MS.gene067388:CDS
GAGGTGGCTGTGTCTTGAGG+AGG 0.576603 5.2:-18363823 None:intergenic
TCAGGAAGTGTAGAACCGAT+TGG 0.579196 5.2:-18363874 None:intergenic
AAGTGTTGATGTTCCTGTGT+TGG 0.580284 5.2:+18362090 MS.gene067388:CDS
TCCCCGGTGGCAGTAGGACA+AGG 0.582355 5.2:+18362334 MS.gene067388:CDS
AGCAATTCTTGGAAGAAACC+TGG 0.582472 5.2:+18362055 MS.gene067388:CDS
GGCGTAGGGAAAGGGTACAT+TGG 0.585151 5.2:+18363016 MS.gene067388:CDS
GAAAGGGTACATTGGACAGA+AGG 0.586417 5.2:+18363024 MS.gene067388:CDS
GTGAAGCAAAGAGAAGGCGT+AGG 0.586517 5.2:+18363001 MS.gene067388:CDS
CCAGGTGGGAAAGCATATGC+AGG 0.588904 5.2:-18362271 None:intergenic
GTTTGAGCATCAGAAAGAGC+TGG 0.591524 5.2:-18362133 None:intergenic
TCTTGTTTAAGGTTGTGTCG+TGG 0.595697 5.2:-18363759 None:intergenic
AGATCCCTCTGAGCATAGCA+TGG 0.596307 5.2:+18362819 MS.gene067388:CDS
TGGCACCGATATCAGTGAGT+CGG 0.599539 5.2:+18362861 MS.gene067388:CDS
ATGTGAAAGATACAGAGAAG+AGG 0.601303 5.2:+18363719 MS.gene067388:CDS
ATTAGAGTTTAGAATTGCGA+CGG 0.604472 5.2:-18362890 None:intergenic
GGAACAGCAATGTGAGTTGG+AGG 0.613590 5.2:-18362250 None:intergenic
CAAGCTGAGTCAGTACCAGA+AGG 0.630435 5.2:+18362973 MS.gene067388:CDS
GAAGTCGTGAAGCAAAGAGA+AGG 0.632257 5.2:+18362995 MS.gene067388:CDS
TGAAGCAAAGAGAAGGCGTA+GGG 0.634488 5.2:+18363002 MS.gene067388:CDS
GGTTCAGGACCTTATCCGAA+TGG 0.638603 5.2:+18362292 MS.gene067388:CDS
GAATCCTAAGCCTATATCCC+CGG 0.639501 5.2:+18362318 MS.gene067388:CDS
GATAAGGTCCTGAACCAGGT+GGG 0.657071 5.2:-18362285 None:intergenic
TTGGTTCCAACAACCAACAC+AGG 0.665985 5.2:-18362103 None:intergenic
TGTTGAGAATGTTCGTCCTG+TGG 0.681853 5.2:+18362174 MS.gene067388:CDS
TCCTAAGCCTATATCCCCGG+TGG 0.696743 5.2:+18362321 MS.gene067388:CDS
GGATAAGGTCCTGAACCAGG+TGG 0.699303 5.2:-18362286 None:intergenic
ACCTTGTCCTACTGCCACCG+GGG 0.705208 5.2:-18362335 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTCTTATAGTTGTTTTTT+TGG + chr5.2:18362745-18362764 MS.gene067388:intron 15.0%
!!! ATTTTGTTAACTTACATAAT+TGG + chr5.2:18362506-18362525 MS.gene067388:intron 15.0%
!!! TTCTATAATTTGTGATATAT+AGG + chr5.2:18363572-18363591 MS.gene067388:intron 15.0%
!!! TTCTTTTTCAATTCTATTTT+AGG + chr5.2:18363094-18363113 MS.gene067388:intron 15.0%
!! AAAAAAAGATATAACTTCCA+AGG - chr5.2:18363076-18363095 None:intergenic 20.0%
!! AAAGAAATGAAACTATATCT+TGG - chr5.2:18363503-18363522 None:intergenic 20.0%
!! AAGAATTAAGAAGATTTAAC+TGG + chr5.2:18362664-18362683 MS.gene067388:intron 20.0%
!! AGATATTTCAAAAGAATTTG+TGG + chr5.2:18363639-18363658 MS.gene067388:CDS 20.0%
!! ATTATGATATCTTCTCATTA+TGG + chr5.2:18362451-18362470 MS.gene067388:intron 20.0%
!! TGTAAGTTAACAAAATTACT+TGG - chr5.2:18362502-18362521 None:intergenic 20.0%
!!! CATGCATAATATTTTTTGAA+TGG - chr5.2:18362707-18362726 None:intergenic 20.0%
! AGATGCAAATTAATCTTTCT+AGG + chr5.2:18363413-18363432 MS.gene067388:intron 25.0%
! TGAGCAAAATTAAGATTACT+TGG - chr5.2:18362556-18362575 None:intergenic 25.0%
!! ATTTTGCTCATTCGTATAAT+TGG + chr5.2:18362566-18362585 MS.gene067388:intron 25.0%
!! GCTCATTTAAATCATTTTGA+TGG - chr5.2:18362786-18362805 None:intergenic 25.0%
!! TATTGTAAATACGTATCGAT+TGG - chr5.2:18363297-18363316 None:intergenic 25.0%
!!! CATTTAAATCATTTTGATGG+AGG - chr5.2:18362783-18362802 None:intergenic 25.0%
!!! TTGGTGGATAAAGTATTTTT+GGG - chr5.2:18363698-18363717 None:intergenic 25.0%
!!! TTTGGTGGATAAAGTATTTT+TGG - chr5.2:18363699-18363718 None:intergenic 25.0%
ACATTCTCAACATGATTCTT+AGG - chr5.2:18362166-18362185 None:intergenic 30.0%
GTAAGTATTCAATCTATCCT+TGG + chr5.2:18363056-18363075 MS.gene067388:intron 30.0%
TTGGTATGTATCCAAAACAA+TGG - chr5.2:18363484-18363503 None:intergenic 30.0%
! ATTAGAGTTTAGAATTGCGA+CGG - chr5.2:18362893-18362912 None:intergenic 30.0%
! TCAACATGATTCTTAGGTTT+TGG - chr5.2:18362160-18362179 None:intergenic 30.0%
! TCTCATTATGGTTCTGTAAT+TGG + chr5.2:18362463-18362482 MS.gene067388:intron 30.0%
! TCTCTGTATCTTTCACATTT+TGG - chr5.2:18363717-18363736 None:intergenic 30.0%
! TGATGTGTCATTCTTGTTTA+AGG - chr5.2:18363773-18363792 None:intergenic 30.0%
! TGTGATATATAGGTTGTTTC+TGG + chr5.2:18363582-18363601 MS.gene067388:intron 30.0%
! TTCTCAAGTTTGTTCATATC+AGG - chr5.2:18363895-18363914 None:intergenic 30.0%
!! AGGCATAGTTGATTTGATTA+AGG + chr5.2:18362604-18362623 MS.gene067388:intron 30.0%
!! ATATATAGGTTGTTTCTGGA+GGG + chr5.2:18363586-18363605 MS.gene067388:intron 30.0%
!! CTGTAATTGGTTTGAGTAAT+TGG + chr5.2:18362476-18362495 MS.gene067388:intron 30.0%
!! TTCCAAGAATTGCTTTTCTT+AGG - chr5.2:18362049-18362068 None:intergenic 30.0%
ATGTGAAAGATACAGAGAAG+AGG + chr5.2:18363719-18363738 MS.gene067388:CDS 35.0%
CTCCTAAGAAAAGCAATTCT+TGG + chr5.2:18362044-18362063 MS.gene067388:CDS 35.0%
TAGTTCATCTGATTAAGGCT+TGG + chr5.2:18362530-18362549 MS.gene067388:intron 35.0%
TTGCTTTGATACCATTGAAG+TGG + chr5.2:18362382-18362401 MS.gene067388:intron 35.0%
! ATTGGCTAGTTGATCTGATT+AGG + chr5.2:18362584-18362603 MS.gene067388:intron 35.0%
! CTGTATCTTTCACATTTTGG+TGG - chr5.2:18363714-18363733 None:intergenic 35.0%
! GATACTCAACTTTGAAGAAG+TGG + chr5.2:18363225-18363244 MS.gene067388:intron 35.0%
! TGCAAGTGTTTCCATTGTTT+TGG + chr5.2:18363470-18363489 MS.gene067388:intron 35.0%
! TTGGCTAGTTCATCTGATTA+AGG + chr5.2:18362525-18362544 MS.gene067388:intron 35.0%
!! GATATATAGGTTGTTTCTGG+AGG + chr5.2:18363585-18363604 MS.gene067388:intron 35.0%
!! TATATAGGTTGTTTCTGGAG+GGG + chr5.2:18363587-18363606 MS.gene067388:intron 35.0%
!! TTGCTTTTCTTAGGAGACTT+AGG - chr5.2:18362040-18362059 None:intergenic 35.0%
!!! CATCGTTTTTTGAGTAAACC+GGG + chr5.2:18362627-18362646 MS.gene067388:intron 35.0%
!!! GCATCGTTTTTTGAGTAAAC+CGG + chr5.2:18362626-18362645 MS.gene067388:intron 35.0%
!!! GGATAAAGTATTTTTGGGCA+TGG - chr5.2:18363693-18363712 None:intergenic 35.0%
AACTTAGTTCAAGCTGAGTC+AGG + chr5.2:18362919-18362938 MS.gene067388:CDS 40.0%
AGCAATTCTTGGAAGAAACC+TGG + chr5.2:18362055-18362074 MS.gene067388:CDS 40.0%
GAACAACAACAGGAGAAAAC+TGG + chr5.2:18362841-18362860 MS.gene067388:CDS 40.0%
GCAACTAAAAGCCACTTCAA+TGG - chr5.2:18362396-18362415 None:intergenic 40.0%
GGATTCTCATGTTGTTCCAT+AGG - chr5.2:18363805-18363824 None:intergenic 40.0%
! ACACTTTTCTCATCAACACC+AGG - chr5.2:18362076-18362095 None:intergenic 40.0%
! TCTTGTTTAAGGTTGTGTCG+TGG - chr5.2:18363762-18363781 None:intergenic 40.0%
!! AAGTGTTGATGTTCCTGTGT+TGG + chr5.2:18362090-18362109 MS.gene067388:CDS 40.0%
!!! TTTTTTGAGTAAACCGGGTG+AGG + chr5.2:18362632-18362651 MS.gene067388:intron 40.0%
AAAAACATGCTAGGGGACGT+TGG + chr5.2:18363614-18363633 MS.gene067388:CDS 45.0%
AGGGGCTTGAAAAACATGCT+AGG + chr5.2:18363605-18363624 MS.gene067388:CDS 45.0%
ATGACCCGACTCACTGATAT+CGG - chr5.2:18362869-18362888 None:intergenic 45.0%
CAACTGCATTTGTCTTGAGG+TGG - chr5.2:18363842-18363861 None:intergenic 45.0%
CAAGGACGTTGATCTACATG+CGG - chr5.2:18363268-18363287 None:intergenic 45.0%
CACCAACTGCATTTGTCTTG+AGG - chr5.2:18363845-18363864 None:intergenic 45.0%
CACCTCAAGACAAATGCAGT+TGG + chr5.2:18363840-18363859 MS.gene067388:CDS 45.0%
GAAGTCGTGAAGCAAAGAGA+AGG + chr5.2:18362995-18363014 MS.gene067388:CDS 45.0%
GAATCCTAAGCCTATATCCC+CGG + chr5.2:18362318-18362337 MS.gene067388:CDS 45.0%
GCATAGCATGGAACAACAAC+AGG + chr5.2:18362831-18362850 MS.gene067388:CDS 45.0%
GCATGGCTAGCAATTTGAGT+TGG - chr5.2:18363676-18363695 None:intergenic 45.0%
GGGCTTGAAAAACATGCTAG+GGG + chr5.2:18363607-18363626 MS.gene067388:CDS 45.0%
GGGGCTTGAAAAACATGCTA+GGG + chr5.2:18363606-18363625 MS.gene067388:CDS 45.0%
GTTTGAGCATCAGAAAGAGC+TGG - chr5.2:18362136-18362155 None:intergenic 45.0%
TGGTTGTTGGAACCAAGTCT+TGG + chr5.2:18362110-18362129 MS.gene067388:CDS 45.0%
TGTTCCATGCTATGCTCAGA+GGG - chr5.2:18362826-18362845 None:intergenic 45.0%
TGTTGAGAATGTTCGTCCTG+TGG + chr5.2:18362174-18362193 MS.gene067388:CDS 45.0%
TTGGTTCCAACAACCAACAC+AGG - chr5.2:18362106-18362125 None:intergenic 45.0%
TTGTTCCATGCTATGCTCAG+AGG - chr5.2:18362827-18362846 None:intergenic 45.0%
TTTGCTTCACGACTTCCTTC+TGG - chr5.2:18362991-18363010 None:intergenic 45.0%
! AAAGAGAAGGCGTAGGGAAA+GGG + chr5.2:18363008-18363027 MS.gene067388:CDS 45.0%
! GAAAGGGTACATTGGACAGA+AGG + chr5.2:18363024-18363043 MS.gene067388:CDS 45.0%
! GCGCAACTTGTTCAACTTGT+TGG + chr5.2:18363918-18363937 MS.gene067388:CDS 45.0%
! TCAGGAAGTGTAGAACCGAT+TGG - chr5.2:18363877-18363896 None:intergenic 45.0%
! TGAAGCAAAGAGAAGGCGTA+GGG + chr5.2:18363002-18363021 MS.gene067388:CDS 45.0%
!! CGTATCGATTGGTAGCTACA+AGG - chr5.2:18363286-18363305 None:intergenic 45.0%
!! GATGTTCCTGTGTTGGTTGT+TGG + chr5.2:18362097-18362116 MS.gene067388:CDS 45.0%
ACAGGACGAACATTGCGCTT+GGG - chr5.2:18362226-18362245 None:intergenic 50.0%
AGAAAGAGCTGGCCAAGACT+TGG - chr5.2:18362125-18362144 None:intergenic 50.0%
AGATCCCTCTGAGCATAGCA+TGG + chr5.2:18362819-18362838 MS.gene067388:CDS 50.0%
CAAGCTGAGTCAGTACCAGA+AGG + chr5.2:18362973-18362992 MS.gene067388:CDS 50.0%
CACATCAGTCACTGCTCCTA+TGG + chr5.2:18363786-18363805 MS.gene067388:CDS 50.0%
GATAAGGTCCTGAACCAGGT+GGG - chr5.2:18362288-18362307 None:intergenic 50.0%
GCAGGAACAGCAATGTGAGT+TGG - chr5.2:18362256-18362275 None:intergenic 50.0%
GGATTCGCACCATTCGGATA+AGG - chr5.2:18362304-18362323 None:intergenic 50.0%
GGCTTAGGATTCGCACCATT+CGG - chr5.2:18362310-18362329 None:intergenic 50.0%
GGTTCAGGACCTTATCCGAA+TGG + chr5.2:18362292-18362311 MS.gene067388:CDS 50.0%
TATGCTTTCCCACCTGGTTC+AGG + chr5.2:18362277-18362296 MS.gene067388:CDS 50.0%
TCACCACGCTATCAAAAGCC+AGG + chr5.2:18362199-18362218 MS.gene067388:CDS 50.0%
TGCTATGCTCAGAGGGATCT+TGG - chr5.2:18362819-18362838 None:intergenic 50.0%
TTCGGATAAGGTCCTGAACC+AGG - chr5.2:18362292-18362311 None:intergenic 50.0%
! CAAAGAGAAGGCGTAGGGAA+AGG + chr5.2:18363007-18363026 MS.gene067388:CDS 50.0%
! GGAACAGCAATGTGAGTTGG+AGG - chr5.2:18362253-18362272 None:intergenic 50.0%
! GTGAAGCAAAGAGAAGGCGT+AGG + chr5.2:18363001-18363020 MS.gene067388:CDS 50.0%
!! TGGCACCGATATCAGTGAGT+CGG + chr5.2:18362861-18362880 MS.gene067388:CDS 50.0%
!! TTGGTGCTGCTCTGTCCAAT+CGG + chr5.2:18363859-18363878 MS.gene067388:CDS 50.0%
CAAGCGCAATGTTCGTCCTG+TGG + chr5.2:18362225-18362244 MS.gene067388:CDS 55.0%
CAAGCTGAGTCAGGAGCAGA+AGG + chr5.2:18362928-18362947 MS.gene067388:CDS 55.0%
CACAGGACGAACATTGCGCT+TGG - chr5.2:18362227-18362246 None:intergenic 55.0%
CAGGACGAACATTGCGCTTG+GGG - chr5.2:18362225-18362244 None:intergenic 55.0%
CCTGCATATGCTTTCCCACC+TGG + chr5.2:18362271-18362290 MS.gene067388:CDS 55.0%
CTTGAGGTGGCTGTGTCTTG+AGG - chr5.2:18363829-18363848 None:intergenic 55.0%
GAGGGATCTTGGACTGAAGC+TGG - chr5.2:18362808-18362827 None:intergenic 55.0%
GGATAAGGTCCTGAACCAGG+TGG - chr5.2:18362289-18362308 None:intergenic 55.0%
TCACCTTGTCCTACTGCCAC+CGG - chr5.2:18362340-18362359 None:intergenic 55.0%
TCCTAAGCCTATATCCCCGG+TGG + chr5.2:18362321-18362340 MS.gene067388:CDS 55.0%
TGAGTAAACCGGGTGAGGCT+GGG + chr5.2:18362637-18362656 MS.gene067388:intron 55.0%
TTGAGTAAACCGGGTGAGGC+TGG + chr5.2:18362636-18362655 MS.gene067388:intron 55.0%
! CCAGGTGGGAAAGCATATGC+AGG - chr5.2:18362274-18362293 None:intergenic 55.0%
! GGCGTAGGGAAAGGGTACAT+TGG + chr5.2:18363016-18363035 MS.gene067388:CDS 55.0%
! TGATAGCGTGGTGATGCCAC+AGG - chr5.2:18362193-18362212 None:intergenic 55.0%
!! ATGTGAGTTGGAGGTGCCAC+AGG - chr5.2:18362244-18362263 None:intergenic 55.0%
!! GGCACCGATATCAGTGAGTC+GGG + chr5.2:18362862-18362881 MS.gene067388:CDS 55.0%
ACCTTGTCCTACTGCCACCG+GGG - chr5.2:18362338-18362357 None:intergenic 60.0%
CACCTTGTCCTACTGCCACC+GGG - chr5.2:18362339-18362358 None:intergenic 60.0%
CCTACTGCCACCGGGGATAT+AGG - chr5.2:18362331-18362350 None:intergenic 60.0%
CCTATATCCCCGGTGGCAGT+AGG + chr5.2:18362328-18362347 MS.gene067388:CDS 60.0%
GAGGTGGCTGTGTCTTGAGG+AGG - chr5.2:18363826-18363845 None:intergenic 60.0%
GAGTAAACCGGGTGAGGCTG+GGG + chr5.2:18362638-18362657 MS.gene067388:intron 60.0%
GCCACCGGGGATATAGGCTT+AGG - chr5.2:18362325-18362344 None:intergenic 60.0%
TCTTAGTCCCCAGCCTCACC+CGG - chr5.2:18362648-18362667 None:intergenic 60.0%
!!! GGGCCTGGCTTTTGATAGCG+TGG - chr5.2:18362205-18362224 None:intergenic 60.0%
CGAACATTGCGCTTGGGGCC+TGG - chr5.2:18362220-18362239 None:intergenic 65.0%
TCCCCGGTGGCAGTAGGACA+AGG + chr5.2:18362334-18362353 MS.gene067388:CDS 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 18362007 18363954 18362007 ID=MS.gene067388
chr5.2 mRNA 18362007 18363954 18362007 ID=MS.gene067388.t1;Parent=MS.gene067388
chr5.2 exon 18362007 18362355 18362007 ID=MS.gene067388.t1.exon1;Parent=MS.gene067388.t1
chr5.2 CDS 18362007 18362355 18362007 ID=cds.MS.gene067388.t1;Parent=MS.gene067388.t1
chr5.2 exon 18362779 18363055 18362779 ID=MS.gene067388.t1.exon2;Parent=MS.gene067388.t1
chr5.2 CDS 18362779 18363055 18362779 ID=cds.MS.gene067388.t1;Parent=MS.gene067388.t1
chr5.2 exon 18363594 18363954 18363594 ID=MS.gene067388.t1.exon3;Parent=MS.gene067388.t1
chr5.2 CDS 18363594 18363954 18363594 ID=cds.MS.gene067388.t1;Parent=MS.gene067388.t1
Gene Sequence

>MS.gene067388

ATGGTGATTGCTGATAATGAGATTAGTGCTCCTAAGTCTCCTAAGAAAAGCAATTCTTGGAAGAAACCTGGTGTTGATGAGAAAAGTGTTGATGTTCCTGTGTTGGTTGTTGGAACCAAGTCTTGGCCAGCTCTTTCTGATGCTCAAACTCCAAAACCTAAGAATCATGTTGAGAATGTTCGTCCTGTGGCATCACCACGCTATCAAAAGCCAGGCCCCAAGCGCAATGTTCGTCCTGTGGCACCTCCAACTCACATTGCTGTTCCTGCATATGCTTTCCCACCTGGTTCAGGACCTTATCCGAATGGTGCGAATCCTAAGCCTATATCCCCGGTGGCAGTAGGACAAGGTGAGAATCACTAATCTTCAATATTCTTGCTTTGATACCATTGAAGTGGCTTTTAGTTGCAACATGATGTTTTACAATGAGTGTTTTTTATTGTCATTATGATATCTTCTCATTATGGTTCTGTAATTGGTTTGAGTAATTGGCCAAGTAATTTTGTTAACTTACATAATTGGCTAGTTCATCTGATTAAGGCTTGGCCAAGTAATCTTAATTTTGCTCATTCGTATAATTGGCTAGTTGATCTGATTAGGCATAGTTGATTTGATTAAGGCATCGTTTTTTGAGTAAACCGGGTGAGGCTGGGGACTAAGAATTAAGAAGATTTAACTGGTATCTAACATATTTTTACCATTCAAAAAATATTATGCATGTCGATTTAACTAGTTTTAAATTCTTATAGTTGTTTTTTTGGTATACAATTAGACCTCCATCAAAATGATTTAAATGAGCCAGCTTCAGTCCAAGATCCCTCTGAGCATAGCATGGAACAACAACAGGAGAAAACTGGCACCGATATCAGTGAGTCGGGTCATGCCGTCGCAATTCTAAACTCTAATGATAATAACTTAGTTCAAGCTGAGTCAGGAGCAGAAGGAAGTAATGAAGCTAACTTAGTTCAAGCTGAGTCAGTACCAGAAGGAAGTCGTGAAGCAAAGAGAAGGCGTAGGGAAAGGGTACATTGGACAGAAGGTGAACATAAGTAAGTATTCAATCTATCCTTGGAAGTTATATCTTTTTTTCTTTTTCAATTCTATTTTAGGTTAAATATATTCTTTTCAATTTAAGTTATTAGATGAAGTATTAAATAGTTGTTAGATCGCATAACTACAAATTTATATTTTTATTTTAGACGAATAGTCTAGTGACTAGATACTCAACTTTGAAGAAGTGGAATATTTTCGATTCGAACCGCATGTAGATCAACGTCCTTGTAGCTACCAATCGATACGTATTTACAATACATTAATAAAAAAACACATTTATAGCTTTTTAGTTTGTATGATGTATATAAGAAATAATTGAGTTCTAGAAAAACAAAAATGATATTTATGTTCATAGATGCAAATTAATCTTTCTAGGTTGCAAATCAACAAAGAGAAGAGAAAAAAATCAATGCAAGTGTTTCCATTGTTTTGGATACATACCAAGATATAGTTTCATTTCTTTATTATTTTCTTCTCTTATTATTTAATTGAATTTGAATATTTCGCATTCATTCTATAATTTGTGATATATAGGTTGTTTCTGGAGGGGCTTGAAAAACATGCTAGGGGACGTTGGAAAGATATTTCAAAAGAATTTGTGGTGACAAAGACTCCAACTCAAATTGCTAGCCATGCCCAAAAATACTTTATCCACCAAAATGTGAAAGATACAGAGAAGAGGAAAAAGAGAAGAAGTATCCACGACACAACCTTAAACAAGAATGACACATCAGTCACTGCTCCTATGGAACAACATGAGAATCCTCCTCAAGACACAGCCACCTCAAGACAAATGCAGTTGGTGCTGCTCTGTCCAATCGGTTCTACACTTCCTGATATGAACAAACTTGAGAAGATGCGCAACTTGTTCAACTTGTTGGCAAAAGAACTTTGA
Protein sequence

>MS.gene067388.t1

MVIADNEISAPKSPKKSNSWKKPGVDEKSVDVPVLVVGTKSWPALSDAQTPKPKNHVENVRPVASPRYQKPGPKRNVRPVAPPTHIAVPAYAFPPGSGPYPNGANPKPISPVAVGQDLHQNDLNEPASVQDPSEHSMEQQQEKTGTDISESGHAVAILNSNDNNLVQAESGAEGSNEANLVQAESVPEGSREAKRRRRERVHWTEGEHKLFLEGLEKHARGRWKDISKEFVVTKTPTQIASHAQKYFIHQNVKDTEKRKKRRSIHDTTLNKNDTSVTAPMEQHENPPQDTATSRQMQLVLLCPIGSTLPDMNKLEKMRNLFNLLAKEL