Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067453.t1 | XP_013446167.2 | 75.2 | 294 | 67 | 3 | 1 | 290 | 1 | 292 | 6.30E-108 | 400.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067453.t1 | Q9T072 | 42.5 | 193 | 106 | 2 | 93 | 280 | 129 | 321 | 1.7e-29 | 131.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067453.t1 | G7IMB7 | 73.7 | 297 | 8 | 5 | 1 | 293 | 2 | 232 | 1.6e-100 | 375.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene067453.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067453.t1 | MTR_2g104590 | 73.737 | 297 | 8 | 5 | 1 | 293 | 2 | 232 | 3.23e-144 | 405 |
MS.gene067453.t1 | MTR_8g069740 | 73.333 | 270 | 66 | 3 | 1 | 266 | 1 | 268 | 1.62e-135 | 384 |
MS.gene067453.t1 | MTR_2g104650 | 67.905 | 296 | 71 | 5 | 1 | 292 | 1 | 276 | 3.03e-121 | 348 |
MS.gene067453.t1 | MTR_2g104550 | 42.308 | 286 | 140 | 8 | 13 | 282 | 33 | 309 | 5.53e-58 | 188 |
MS.gene067453.t1 | MTR_4g009540 | 39.414 | 307 | 146 | 10 | 14 | 282 | 24 | 328 | 2.25e-53 | 177 |
MS.gene067453.t1 | MTR_2g104490 | 39.362 | 282 | 150 | 6 | 13 | 282 | 33 | 305 | 2.73e-51 | 171 |
MS.gene067453.t1 | MTR_8g009020 | 43.162 | 234 | 115 | 4 | 65 | 280 | 85 | 318 | 2.12e-50 | 169 |
MS.gene067453.t1 | MTR_2g104620 | 50.667 | 225 | 50 | 6 | 1 | 221 | 1 | 168 | 8.84e-49 | 160 |
MS.gene067453.t1 | MTR_4g009110 | 41.772 | 237 | 115 | 6 | 65 | 282 | 115 | 347 | 7.38e-47 | 160 |
MS.gene067453.t1 | MTR_5g014520 | 47.090 | 189 | 92 | 4 | 99 | 283 | 144 | 328 | 7.87e-46 | 157 |
MS.gene067453.t1 | MTR_2g104500 | 39.051 | 274 | 142 | 7 | 13 | 280 | 13 | 267 | 6.36e-45 | 153 |
MS.gene067453.t1 | MTR_8g009010 | 36.242 | 298 | 124 | 9 | 13 | 283 | 12 | 270 | 1.12e-44 | 154 |
MS.gene067453.t1 | MTR_4g009540 | 37.716 | 289 | 140 | 10 | 14 | 264 | 24 | 310 | 1.19e-44 | 154 |
MS.gene067453.t1 | MTR_2g104490 | 37.500 | 264 | 144 | 6 | 13 | 264 | 33 | 287 | 2.10e-43 | 150 |
MS.gene067453.t1 | MTR_5g014600 | 43.878 | 196 | 94 | 5 | 103 | 282 | 137 | 332 | 2.81e-42 | 148 |
MS.gene067453.t1 | MTR_5g014560 | 39.048 | 210 | 115 | 4 | 86 | 283 | 94 | 302 | 1.17e-41 | 146 |
MS.gene067453.t1 | MTR_2g104560 | 42.929 | 198 | 87 | 6 | 96 | 280 | 36 | 220 | 3.87e-41 | 142 |
MS.gene067453.t1 | MTR_2g104530 | 44.737 | 228 | 111 | 8 | 64 | 280 | 46 | 269 | 5.72e-41 | 143 |
MS.gene067453.t1 | MTR_0246s0020 | 39.801 | 201 | 114 | 3 | 90 | 283 | 173 | 373 | 5.64e-40 | 143 |
MS.gene067453.t1 | MTR_4g097940 | 41.081 | 185 | 91 | 5 | 107 | 282 | 148 | 323 | 1.16e-39 | 141 |
MS.gene067453.t1 | MTR_4g067010 | 32.534 | 292 | 173 | 8 | 10 | 282 | 28 | 314 | 6.76e-39 | 139 |
MS.gene067453.t1 | MTR_2g010450 | 43.182 | 176 | 93 | 4 | 110 | 280 | 173 | 346 | 1.49e-38 | 139 |
MS.gene067453.t1 | MTR_7g080780 | 38.934 | 244 | 135 | 5 | 39 | 280 | 80 | 311 | 2.87e-38 | 137 |
MS.gene067453.t1 | MTR_7g080780 | 38.934 | 244 | 135 | 5 | 39 | 280 | 93 | 324 | 3.81e-38 | 137 |
MS.gene067453.t1 | MTR_4g066460 | 43.407 | 182 | 98 | 4 | 103 | 282 | 144 | 322 | 6.63e-38 | 137 |
MS.gene067453.t1 | MTR_5g014640 | 38.660 | 194 | 110 | 3 | 97 | 286 | 137 | 325 | 1.98e-37 | 135 |
MS.gene067453.t1 | MTR_4g092700 | 40.704 | 199 | 112 | 3 | 92 | 284 | 132 | 330 | 2.31e-36 | 132 |
MS.gene067453.t1 | MTR_0011s0210 | 41.279 | 172 | 93 | 3 | 114 | 280 | 183 | 351 | 4.52e-36 | 132 |
MS.gene067453.t1 | MTR_0250s0040 | 39.572 | 187 | 103 | 5 | 103 | 283 | 77 | 259 | 8.52e-36 | 129 |
MS.gene067453.t1 | MTR_4g066380 | 34.323 | 303 | 161 | 8 | 10 | 283 | 27 | 320 | 1.86e-35 | 130 |
MS.gene067453.t1 | MTR_4g097920 | 38.378 | 185 | 96 | 5 | 107 | 282 | 133 | 308 | 5.08e-35 | 129 |
MS.gene067453.t1 | MTR_4g097920 | 38.378 | 185 | 96 | 5 | 107 | 282 | 148 | 323 | 7.02e-35 | 129 |
MS.gene067453.t1 | MTR_0011s0260 | 39.535 | 172 | 96 | 3 | 114 | 280 | 183 | 351 | 5.48e-34 | 127 |
MS.gene067453.t1 | MTR_4g097950 | 40.838 | 191 | 103 | 4 | 100 | 281 | 57 | 246 | 8.75e-34 | 124 |
MS.gene067453.t1 | MTR_6g047570 | 39.000 | 200 | 113 | 5 | 90 | 283 | 134 | 330 | 1.19e-32 | 123 |
MS.gene067453.t1 | MTR_0246s0020 | 38.587 | 184 | 106 | 3 | 90 | 266 | 173 | 356 | 4.30e-32 | 122 |
MS.gene067453.t1 | MTR_0246s0050 | 32.636 | 239 | 142 | 7 | 51 | 283 | 90 | 315 | 2.27e-29 | 114 |
MS.gene067453.t1 | MTR_4g098035 | 32.636 | 239 | 142 | 7 | 51 | 283 | 111 | 336 | 2.31e-29 | 114 |
MS.gene067453.t1 | MTR_4g009510 | 40.230 | 174 | 88 | 6 | 117 | 286 | 45 | 206 | 8.09e-28 | 107 |
MS.gene067453.t1 | MTR_4g009420 | 39.412 | 170 | 84 | 4 | 118 | 286 | 47 | 198 | 8.35e-28 | 107 |
MS.gene067453.t1 | MTR_7g451650 | 36.047 | 172 | 92 | 5 | 118 | 286 | 42 | 198 | 5.41e-25 | 99.4 |
MS.gene067453.t1 | MTR_7g050350 | 37.671 | 146 | 77 | 4 | 144 | 286 | 2 | 136 | 2.08e-21 | 88.2 |
MS.gene067453.t1 | MTR_7g451650 | 37.671 | 146 | 77 | 4 | 144 | 286 | 2 | 136 | 2.08e-21 | 88.2 |
MS.gene067453.t1 | MTR_4g009420 | 38.158 | 152 | 75 | 4 | 118 | 268 | 47 | 180 | 2.47e-20 | 87.0 |
MS.gene067453.t1 | MTR_5g014550 | 37.600 | 125 | 72 | 3 | 143 | 263 | 53 | 175 | 1.44e-18 | 82.0 |
MS.gene067453.t1 | MTR_7g451650 | 36.364 | 154 | 80 | 6 | 118 | 268 | 42 | 180 | 6.30e-18 | 80.1 |
MS.gene067453.t1 | MTR_6g047550 | 43.956 | 91 | 50 | 1 | 90 | 179 | 148 | 238 | 8.06e-15 | 73.2 |
MS.gene067453.t1 | MTR_8g064700 | 25.877 | 228 | 130 | 8 | 65 | 261 | 179 | 398 | 2.05e-12 | 67.4 |
MS.gene067453.t1 | MTR_5g030430 | 25.153 | 163 | 93 | 5 | 111 | 250 | 490 | 646 | 5.62e-12 | 66.2 |
MS.gene067453.t1 | MTR_7g117670 | 23.256 | 172 | 119 | 2 | 111 | 279 | 399 | 560 | 5.72e-11 | 63.2 |
MS.gene067453.t1 | MTR_3g030700 | 27.545 | 167 | 111 | 4 | 104 | 263 | 189 | 352 | 8.13e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067453.t1 | AT4G37850 | 42.564 | 195 | 103 | 3 | 93 | 280 | 129 | 321 | 2.92e-40 | 143 |
MS.gene067453.t1 | AT4G37850 | 42.564 | 195 | 103 | 3 | 93 | 280 | 129 | 321 | 2.92e-40 | 143 |
MS.gene067453.t1 | AT2G22750 | 47.778 | 180 | 88 | 2 | 106 | 279 | 118 | 297 | 5.84e-39 | 139 |
MS.gene067453.t1 | AT2G22750 | 47.778 | 180 | 88 | 2 | 106 | 279 | 146 | 325 | 8.49e-39 | 139 |
MS.gene067453.t1 | AT2G22750 | 47.778 | 180 | 88 | 2 | 106 | 279 | 142 | 321 | 1.01e-38 | 139 |
MS.gene067453.t1 | AT2G22750 | 47.778 | 180 | 87 | 3 | 106 | 279 | 118 | 296 | 1.96e-37 | 135 |
MS.gene067453.t1 | AT2G22750 | 47.778 | 180 | 87 | 3 | 106 | 279 | 146 | 324 | 2.70e-37 | 135 |
MS.gene067453.t1 | AT2G22760 | 31.982 | 222 | 141 | 5 | 69 | 282 | 74 | 293 | 9.27e-30 | 114 |
MS.gene067453.t1 | AT2G22770 | 36.559 | 186 | 101 | 3 | 114 | 282 | 132 | 317 | 2.89e-28 | 111 |
MS.gene067453.t1 | AT2G22760 | 31.527 | 203 | 130 | 4 | 69 | 264 | 74 | 274 | 3.77e-25 | 102 |
MS.gene067453.t1 | AT4G29930 | 26.000 | 200 | 128 | 5 | 72 | 264 | 11 | 197 | 1.60e-16 | 77.4 |
MS.gene067453.t1 | AT4G29930 | 25.616 | 203 | 131 | 5 | 72 | 267 | 11 | 200 | 1.63e-16 | 77.4 |
MS.gene067453.t1 | AT4G29930 | 25.339 | 221 | 138 | 6 | 72 | 267 | 11 | 229 | 3.83e-16 | 76.6 |
MS.gene067453.t1 | AT4G29930 | 25.688 | 218 | 135 | 6 | 72 | 264 | 11 | 226 | 4.06e-16 | 77.0 |
MS.gene067453.t1 | AT4G29930 | 25.688 | 218 | 135 | 6 | 72 | 264 | 11 | 226 | 4.06e-16 | 77.0 |
MS.gene067453.t1 | AT4G29930 | 25.743 | 202 | 135 | 5 | 72 | 267 | 11 | 203 | 3.15e-15 | 73.6 |
MS.gene067453.t1 | AT4G09820 | 33.557 | 149 | 76 | 4 | 102 | 249 | 351 | 477 | 3.54e-15 | 75.9 |
MS.gene067453.t1 | AT5G57150 | 23.645 | 203 | 145 | 4 | 72 | 264 | 12 | 214 | 1.81e-14 | 71.6 |
MS.gene067453.t1 | AT4G17880 | 26.761 | 213 | 108 | 8 | 69 | 250 | 363 | 558 | 3.12e-14 | 73.2 |
MS.gene067453.t1 | AT5G46760 | 29.221 | 154 | 91 | 4 | 111 | 250 | 412 | 561 | 3.19e-14 | 73.2 |
MS.gene067453.t1 | AT5G57150 | 23.762 | 202 | 144 | 4 | 72 | 263 | 12 | 213 | 4.23e-14 | 70.9 |
MS.gene067453.t1 | AT1G32640 | 27.160 | 162 | 95 | 4 | 104 | 250 | 442 | 595 | 2.81e-13 | 70.5 |
MS.gene067453.t1 | AT5G57150 | 23.039 | 204 | 147 | 4 | 72 | 265 | 13 | 216 | 4.95e-13 | 67.4 |
MS.gene067453.t1 | AT5G57150 | 23.039 | 204 | 147 | 4 | 72 | 265 | 13 | 216 | 7.35e-13 | 67.0 |
MS.gene067453.t1 | AT5G57150 | 23.256 | 215 | 155 | 4 | 72 | 276 | 13 | 227 | 8.29e-13 | 67.4 |
MS.gene067453.t1 | AT1G63650 | 27.632 | 152 | 89 | 2 | 111 | 242 | 402 | 552 | 1.84e-12 | 67.8 |
MS.gene067453.t1 | AT1G63650 | 27.632 | 152 | 89 | 2 | 111 | 242 | 402 | 552 | 1.84e-12 | 67.8 |
MS.gene067453.t1 | AT1G63650 | 27.632 | 152 | 89 | 2 | 111 | 242 | 402 | 552 | 1.84e-12 | 67.8 |
MS.gene067453.t1 | AT5G41315 | 28.846 | 156 | 87 | 4 | 111 | 242 | 443 | 598 | 8.55e-12 | 65.9 |
MS.gene067453.t1 | AT5G41315 | 28.846 | 156 | 87 | 4 | 111 | 242 | 446 | 601 | 8.97e-12 | 65.9 |
MS.gene067453.t1 | AT5G41315 | 28.846 | 156 | 87 | 4 | 111 | 242 | 438 | 593 | 9.17e-12 | 65.9 |
MS.gene067453.t1 | AT2G46510 | 29.661 | 118 | 66 | 3 | 104 | 221 | 385 | 485 | 2.13e-11 | 64.7 |
Find 55 sgRNAs with CRISPR-Local
Find 70 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAGCTTGAAGTGAGGGTTCT+AGG | 0.256835 | 2.4:+987668 | MS.gene067453:CDS |
ACTAGGCCAGTTGTGAAAAT+AGG | 0.274393 | 2.4:-987006 | None:intergenic |
CAAGACATTGGTAGTTGTTA+TGG | 0.303801 | 2.4:-987777 | None:intergenic |
ACTACCAATGTCTTGCCATT+TGG | 0.326554 | 2.4:+987785 | MS.gene067453:CDS |
AAGAGTAGTGGCTACGTTGC+AGG | 0.356620 | 2.4:+988049 | MS.gene067453:CDS |
ATTACTTGCCTGAGCAATAA+TGG | 0.372110 | 2.4:-987825 | None:intergenic |
AGTATATAAGTTGTTGGTAT+TGG | 0.379293 | 2.4:-987099 | None:intergenic |
ACATAATAACAGAGAGGAAC+AGG | 0.423437 | 2.4:+987256 | MS.gene067453:CDS |
CTCTTCATCAAATATGTTGT+TGG | 0.428970 | 2.4:-986935 | None:intergenic |
CTAGGCCAGTTGTGAAAATA+GGG | 0.436339 | 2.4:-987005 | None:intergenic |
TAAGACAGTATATAAGTTGT+TGG | 0.443854 | 2.4:-987105 | None:intergenic |
ATGAACACTAAAGAATGTTA+TGG | 0.445823 | 2.4:+987626 | MS.gene067453:CDS |
AGCTTGAAGTGAGGGTTCTA+GGG | 0.452434 | 2.4:+987669 | MS.gene067453:CDS |
TCTGATTCATGATATCTTTG+AGG | 0.462411 | 2.4:-986960 | None:intergenic |
ATTTATACCTGGATTGAAGA+AGG | 0.472752 | 2.4:+987317 | MS.gene067453:CDS |
TAACATCACCATTATTGCTC+AGG | 0.473971 | 2.4:+987817 | MS.gene067453:CDS |
TCTTCTTTGAATTCGACCCT+TGG | 0.481461 | 2.4:-987206 | None:intergenic |
TGGCACTGTCATTGTAATCA+AGG | 0.489904 | 2.4:-987595 | None:intergenic |
AGAACCCTCACTTCAAGCTC+TGG | 0.495246 | 2.4:-987665 | None:intergenic |
GAAGAAGACATCAAGAAGAA+AGG | 0.507699 | 2.4:+987548 | MS.gene067453:CDS |
GACATCAAGAAGAAAGGTGC+AGG | 0.512048 | 2.4:+987554 | MS.gene067453:CDS |
TTTGCCTTTGTCATCATCAA+AGG | 0.512672 | 2.4:+987176 | MS.gene067453:CDS |
TGTTGAATGAGAGACATTGA+TGG | 0.516688 | 2.4:-987043 | None:intergenic |
GATTCGCTGTGGGAAGCAAA+AGG | 0.520238 | 2.4:+987709 | MS.gene067453:CDS |
AGACTAACCTTCTTCAATCC+AGG | 0.524279 | 2.4:-987324 | None:intergenic |
ATTTCCAGAGCTTGAAGTGA+GGG | 0.525230 | 2.4:+987661 | MS.gene067453:CDS |
ATGACAAAGGCAAAGAATCA+TGG | 0.529186 | 2.4:-987167 | None:intergenic |
ATGTTAAGAGTGTTTCCAAA+TGG | 0.530024 | 2.4:-987800 | None:intergenic |
GAACTTTCAGCATTTATACC+TGG | 0.532111 | 2.4:+987306 | MS.gene067453:CDS |
TTTAGTGTTCATTTCACCCA+TGG | 0.540015 | 2.4:-987615 | None:intergenic |
AGTTGTGAAAATAGGGACAC+TGG | 0.546854 | 2.4:-986998 | None:intergenic |
ACGGACAAGGTTCATGTACT+AGG | 0.549231 | 2.4:+987476 | MS.gene067453:CDS |
TGGACGAGTTGTTGTTGACT+AGG | 0.551791 | 2.4:-987023 | None:intergenic |
TGTTGGTATTGGTAATGAGC+TGG | 0.555632 | 2.4:-987088 | None:intergenic |
GAATCATGGTGTTGTTCAGT+TGG | 0.556807 | 2.4:-987153 | None:intergenic |
AGTTGGTGGTAACAATGTAG+TGG | 0.574871 | 2.4:-987136 | None:intergenic |
GTTTCCAAATGGCAAGACAT+TGG | 0.577033 | 2.4:-987789 | None:intergenic |
TGAAGTGAGGGTTCTAGGGA+AGG | 0.581565 | 2.4:+987673 | MS.gene067453:CDS |
GGGACACTGGGTTGATCTTG+TGG | 0.587098 | 2.4:-986985 | None:intergenic |
CATTTCCAGAGCTTGAAGTG+AGG | 0.591406 | 2.4:+987660 | MS.gene067453:CDS |
TCATCAAAGGCTAACAACCA+AGG | 0.608148 | 2.4:+987189 | MS.gene067453:CDS |
TCATGGTGTTGTTCAGTTGG+TGG | 0.611030 | 2.4:-987150 | None:intergenic |
GATTACAATGACAGTGCCAT+GGG | 0.621047 | 2.4:+987599 | MS.gene067453:CDS |
TTAGCCTTTGATGATGACAA+AGG | 0.628673 | 2.4:-987180 | None:intergenic |
TGTTAATCAAGATTCGCTGT+GGG | 0.635001 | 2.4:+987699 | MS.gene067453:CDS |
GTTGTGAAAATAGGGACACT+GGG | 0.635399 | 2.4:-986997 | None:intergenic |
CATCAAAGGCTAACAACCAA+GGG | 0.638491 | 2.4:+987190 | MS.gene067453:CDS |
GTGTTAATCAAGATTCGCTG+TGG | 0.639073 | 2.4:+987698 | MS.gene067453:CDS |
TGATTACAATGACAGTGCCA+TGG | 0.639996 | 2.4:+987598 | MS.gene067453:CDS |
AATGATTGTGTAGACGGACA+AGG | 0.642480 | 2.4:+987463 | MS.gene067453:intron |
TAAATACAAGTTGACCGTGA+AGG | 0.646419 | 2.4:+988010 | MS.gene067453:CDS |
TGGGAAGCAAAAGGAAATTG+TGG | 0.650519 | 2.4:+987718 | MS.gene067453:CDS |
GCTCTGGAAATGTTTCATTG+TGG | 0.678911 | 2.4:-987649 | None:intergenic |
AGGAGAAGCTGTCAAGTACG+TGG | 0.701643 | 2.4:+987496 | MS.gene067453:CDS |
TAGATCACATAATAACAGAG+AGG | 0.731708 | 2.4:+987250 | MS.gene067453:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAAATTAAGAAAGGAAT+TGG | - | chr2.4:987382-987401 | None:intergenic | 15.0% |
!! | GAAACTTACATTGTAATATA+TGG | - | chr2.4:987947-987966 | None:intergenic | 20.0% |
!! | TCCAGAAAAAAAATTAAGAA+AGG | - | chr2.4:987388-987407 | None:intergenic | 20.0% |
!!! | ACTTTTATAGTAGTTATCAT+TGG | + | chr2.4:987415-987434 | MS.gene067453:intron | 20.0% |
!!! | TCCTTTCTTAATTTTTTTTC+TGG | + | chr2.4:987384-987403 | MS.gene067453:intron | 20.0% |
!!! | TGAATTGTTTTTCTTTTTTG+TGG | - | chr2.4:987853-987872 | None:intergenic | 20.0% |
! | AGTATATAAGTTGTTGGTAT+TGG | - | chr2.4:987102-987121 | None:intergenic | 25.0% |
! | ATGAACACTAAAGAATGTTA+TGG | + | chr2.4:987626-987645 | MS.gene067453:CDS | 25.0% |
! | TAAGACAGTATATAAGTTGT+TGG | - | chr2.4:987108-987127 | None:intergenic | 25.0% |
! | TTATCTAATGATTGTGTAGA+CGG | + | chr2.4:987457-987476 | MS.gene067453:intron | 25.0% |
!! | TTGTAATTGATTCTACAGAT+GGG | + | chr2.4:987984-988003 | MS.gene067453:intron | 25.0% |
!! | TTTGTAATTGATTCTACAGA+TGG | + | chr2.4:987983-988002 | MS.gene067453:intron | 25.0% |
AGTGAAAAAACTAAGAGTAG+TGG | + | chr2.4:988037-988056 | MS.gene067453:CDS | 30.0% | |
ATTTATACCTGGATTGAAGA+AGG | + | chr2.4:987317-987336 | MS.gene067453:CDS | 30.0% | |
CTCTTCATCAAATATGTTGT+TGG | - | chr2.4:986938-986957 | None:intergenic | 30.0% | |
GATAAGAATCAAACTTGAGT+TGG | - | chr2.4:987901-987920 | None:intergenic | 30.0% | |
TAGATCACATAATAACAGAG+AGG | + | chr2.4:987250-987269 | MS.gene067453:CDS | 30.0% | |
TCTGATTCATGATATCTTTG+AGG | - | chr2.4:986963-986982 | None:intergenic | 30.0% | |
!! | ATGTTAAGAGTGTTTCCAAA+TGG | - | chr2.4:987803-987822 | None:intergenic | 30.0% |
!!! | TTTTTTCACTAGATCCTTCA+CGG | - | chr2.4:988027-988046 | None:intergenic | 30.0% |
ACATAATAACAGAGAGGAAC+AGG | + | chr2.4:987256-987275 | MS.gene067453:CDS | 35.0% | |
ATGACAAAGGCAAAGAATCA+TGG | - | chr2.4:987170-987189 | None:intergenic | 35.0% | |
ATTACTTGCCTGAGCAATAA+TGG | - | chr2.4:987828-987847 | None:intergenic | 35.0% | |
GAACTTTCAGCATTTATACC+TGG | + | chr2.4:987306-987325 | MS.gene067453:CDS | 35.0% | |
GAAGAAGACATCAAGAAGAA+AGG | + | chr2.4:987548-987567 | MS.gene067453:CDS | 35.0% | |
TAACATCACCATTATTGCTC+AGG | + | chr2.4:987817-987836 | MS.gene067453:CDS | 35.0% | |
TGTTAATCAAGATTCGCTGT+GGG | + | chr2.4:987699-987718 | MS.gene067453:CDS | 35.0% | |
TGTTGAATGAGAGACATTGA+TGG | - | chr2.4:987046-987065 | None:intergenic | 35.0% | |
TTTAGTGTTCATTTCACCCA+TGG | - | chr2.4:987618-987637 | None:intergenic | 35.0% | |
TTTGCCTTTGTCATCATCAA+AGG | + | chr2.4:987176-987195 | MS.gene067453:CDS | 35.0% | |
! | CAAGACATTGGTAGTTGTTA+TGG | - | chr2.4:987780-987799 | None:intergenic | 35.0% |
! | TAAATACAAGTTGACCGTGA+AGG | + | chr2.4:988010-988029 | MS.gene067453:CDS | 35.0% |
!! | TTAGCCTTTGATGATGACAA+AGG | - | chr2.4:987183-987202 | None:intergenic | 35.0% |
AATGATTGTGTAGACGGACA+AGG | + | chr2.4:987463-987482 | MS.gene067453:intron | 40.0% | |
ACTACCAATGTCTTGCCATT+TGG | + | chr2.4:987785-987804 | MS.gene067453:CDS | 40.0% | |
ACTAGGCCAGTTGTGAAAAT+AGG | - | chr2.4:987009-987028 | None:intergenic | 40.0% | |
AGACTAACCTTCTTCAATCC+AGG | - | chr2.4:987327-987346 | None:intergenic | 40.0% | |
AGTTGTGAAAATAGGGACAC+TGG | - | chr2.4:987001-987020 | None:intergenic | 40.0% | |
ATTTCCAGAGCTTGAAGTGA+GGG | + | chr2.4:987661-987680 | MS.gene067453:CDS | 40.0% | |
CATCAAAGGCTAACAACCAA+GGG | + | chr2.4:987190-987209 | MS.gene067453:CDS | 40.0% | |
CTAGGCCAGTTGTGAAAATA+GGG | - | chr2.4:987008-987027 | None:intergenic | 40.0% | |
GATTACAATGACAGTGCCAT+GGG | + | chr2.4:987599-987618 | MS.gene067453:CDS | 40.0% | |
GGTTCACATATCTAGTGATG+AGG | - | chr2.4:987361-987380 | None:intergenic | 40.0% | |
GTGTTAATCAAGATTCGCTG+TGG | + | chr2.4:987698-987717 | MS.gene067453:CDS | 40.0% | |
GTTGTGAAAATAGGGACACT+GGG | - | chr2.4:987000-987019 | None:intergenic | 40.0% | |
GTTTCCAAATGGCAAGACAT+TGG | - | chr2.4:987792-987811 | None:intergenic | 40.0% | |
TCATCAAAGGCTAACAACCA+AGG | + | chr2.4:987189-987208 | MS.gene067453:CDS | 40.0% | |
TCTTCTTTGAATTCGACCCT+TGG | - | chr2.4:987209-987228 | None:intergenic | 40.0% | |
TGATTACAATGACAGTGCCA+TGG | + | chr2.4:987598-987617 | MS.gene067453:CDS | 40.0% | |
TGGCACTGTCATTGTAATCA+AGG | - | chr2.4:987598-987617 | None:intergenic | 40.0% | |
TGGGAAGCAAAAGGAAATTG+TGG | + | chr2.4:987718-987737 | MS.gene067453:CDS | 40.0% | |
! | AGTGTCCCTATTTTCACAAC+TGG | + | chr2.4:987000-987019 | MS.gene067453:CDS | 40.0% |
!! | AGTTGGTGGTAACAATGTAG+TGG | - | chr2.4:987139-987158 | None:intergenic | 40.0% |
!! | GAATCATGGTGTTGTTCAGT+TGG | - | chr2.4:987156-987175 | None:intergenic | 40.0% |
!! | GCTCTGGAAATGTTTCATTG+TGG | - | chr2.4:987652-987671 | None:intergenic | 40.0% |
!! | TGTTGGTATTGGTAATGAGC+TGG | - | chr2.4:987091-987110 | None:intergenic | 40.0% |
ACGGACAAGGTTCATGTACT+AGG | + | chr2.4:987476-987495 | MS.gene067453:CDS | 45.0% | |
AGCTTGAAGTGAGGGTTCTA+GGG | + | chr2.4:987669-987688 | MS.gene067453:CDS | 45.0% | |
CATTTCCAGAGCTTGAAGTG+AGG | + | chr2.4:987660-987679 | MS.gene067453:CDS | 45.0% | |
! | GACATCAAGAAGAAAGGTGC+AGG | + | chr2.4:987554-987573 | MS.gene067453:CDS | 45.0% |
! | TGGACGAGTTGTTGTTGACT+AGG | - | chr2.4:987026-987045 | None:intergenic | 45.0% |
!! | TCATGGTGTTGTTCAGTTGG+TGG | - | chr2.4:987153-987172 | None:intergenic | 45.0% |
!! | TATATTATAGTAATTAAATT+TGG | - | chr2.4:987923-987942 | None:intergenic | 5.0% |
AAGAGTAGTGGCTACGTTGC+AGG | + | chr2.4:988049-988068 | MS.gene067453:CDS | 50.0% | |
AGAACCCTCACTTCAAGCTC+TGG | - | chr2.4:987668-987687 | None:intergenic | 50.0% | |
AGGAGAAGCTGTCAAGTACG+TGG | + | chr2.4:987496-987515 | MS.gene067453:CDS | 50.0% | |
GAGCTTGAAGTGAGGGTTCT+AGG | + | chr2.4:987668-987687 | MS.gene067453:CDS | 50.0% | |
GATTCGCTGTGGGAAGCAAA+AGG | + | chr2.4:987709-987728 | MS.gene067453:CDS | 50.0% | |
!! | TGAAGTGAGGGTTCTAGGGA+AGG | + | chr2.4:987673-987692 | MS.gene067453:CDS | 50.0% |
!! | GGGACACTGGGTTGATCTTG+TGG | - | chr2.4:986988-987007 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 986913 | 988094 | 986913 | ID=MS.gene067453 |
chr2.4 | mRNA | 986913 | 988094 | 986913 | ID=MS.gene067453.t1;Parent=MS.gene067453 |
chr2.4 | exon | 986913 | 987338 | 986913 | ID=MS.gene067453.t1.exon1;Parent=MS.gene067453.t1 |
chr2.4 | CDS | 986913 | 987338 | 986913 | ID=cds.MS.gene067453.t1;Parent=MS.gene067453.t1 |
chr2.4 | exon | 987476 | 987838 | 987476 | ID=MS.gene067453.t1.exon2;Parent=MS.gene067453.t1 |
chr2.4 | CDS | 987476 | 987838 | 987476 | ID=cds.MS.gene067453.t1;Parent=MS.gene067453.t1 |
chr2.4 | exon | 988002 | 988094 | 988002 | ID=MS.gene067453.t1.exon3;Parent=MS.gene067453.t1 |
chr2.4 | CDS | 988002 | 988094 | 988002 | ID=cds.MS.gene067453.t1;Parent=MS.gene067453.t1 |
Gene Sequence |
Protein sequence |