Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067454.t1 | XP_003597984.2 | 85.7 | 196 | 26 | 1 | 13 | 206 | 59 | 254 | 4.80E-78 | 300.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067454.t1 | Q9T072 | 40.0 | 160 | 95 | 1 | 41 | 199 | 145 | 304 | 7.6e-24 | 112.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067454.t1 | G7IMC5 | 85.7 | 196 | 26 | 1 | 13 | 206 | 59 | 254 | 3.5e-78 | 300.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene067454.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067454.t1 | MTR_8g069740 | 83.684 | 190 | 29 | 1 | 14 | 201 | 78 | 267 | 7.36e-110 | 315 |
MS.gene067454.t1 | MTR_2g104650 | 85.714 | 196 | 26 | 1 | 13 | 206 | 59 | 254 | 5.54e-106 | 306 |
MS.gene067454.t1 | MTR_2g104590 | 64.021 | 189 | 46 | 2 | 20 | 206 | 41 | 209 | 5.50e-75 | 226 |
MS.gene067454.t1 | MTR_8g009020 | 48.315 | 178 | 83 | 4 | 37 | 206 | 132 | 308 | 3.42e-43 | 147 |
MS.gene067454.t1 | MTR_2g104550 | 45.213 | 188 | 96 | 4 | 23 | 207 | 115 | 298 | 1.28e-39 | 138 |
MS.gene067454.t1 | MTR_4g009540 | 41.538 | 195 | 108 | 3 | 18 | 206 | 122 | 316 | 5.15e-39 | 137 |
MS.gene067454.t1 | MTR_5g014520 | 44.311 | 167 | 91 | 2 | 41 | 206 | 150 | 315 | 6.57e-39 | 136 |
MS.gene067454.t1 | MTR_4g009540 | 43.678 | 174 | 92 | 3 | 32 | 199 | 136 | 309 | 1.60e-37 | 132 |
MS.gene067454.t1 | MTR_2g104490 | 39.698 | 199 | 116 | 3 | 7 | 204 | 96 | 291 | 3.30e-37 | 131 |
MS.gene067454.t1 | MTR_0250s0040 | 37.037 | 216 | 107 | 6 | 8 | 206 | 43 | 246 | 1.32e-36 | 129 |
MS.gene067454.t1 | MTR_8g009010 | 44.767 | 172 | 56 | 3 | 37 | 206 | 123 | 257 | 1.91e-36 | 130 |
MS.gene067454.t1 | MTR_2g104490 | 38.889 | 198 | 117 | 3 | 7 | 203 | 96 | 290 | 3.78e-36 | 128 |
MS.gene067454.t1 | MTR_5g014560 | 37.681 | 207 | 97 | 4 | 21 | 206 | 94 | 289 | 5.75e-36 | 128 |
MS.gene067454.t1 | MTR_4g009110 | 44.693 | 179 | 84 | 5 | 30 | 199 | 156 | 328 | 1.19e-35 | 128 |
MS.gene067454.t1 | MTR_4g066460 | 43.182 | 176 | 91 | 5 | 33 | 206 | 142 | 310 | 1.21e-35 | 128 |
MS.gene067454.t1 | MTR_2g010450 | 40.000 | 170 | 99 | 3 | 39 | 206 | 168 | 336 | 2.62e-35 | 127 |
MS.gene067454.t1 | MTR_4g067010 | 41.143 | 175 | 96 | 4 | 33 | 206 | 134 | 302 | 5.66e-35 | 126 |
MS.gene067454.t1 | MTR_4g097940 | 39.766 | 171 | 91 | 4 | 41 | 206 | 148 | 311 | 7.95e-35 | 125 |
MS.gene067454.t1 | MTR_4g097920 | 41.520 | 171 | 88 | 5 | 41 | 206 | 133 | 296 | 3.86e-34 | 124 |
MS.gene067454.t1 | MTR_4g097920 | 41.520 | 171 | 88 | 5 | 41 | 206 | 148 | 311 | 5.91e-34 | 123 |
MS.gene067454.t1 | MTR_0011s0210 | 42.500 | 160 | 90 | 2 | 48 | 206 | 183 | 341 | 8.26e-34 | 124 |
MS.gene067454.t1 | MTR_0011s0260 | 42.771 | 166 | 81 | 4 | 48 | 206 | 183 | 341 | 1.16e-33 | 123 |
MS.gene067454.t1 | MTR_7g080780 | 46.061 | 165 | 77 | 4 | 37 | 199 | 140 | 294 | 1.40e-33 | 122 |
MS.gene067454.t1 | MTR_7g080780 | 46.061 | 165 | 77 | 4 | 37 | 199 | 153 | 307 | 1.47e-33 | 122 |
MS.gene067454.t1 | MTR_0246s0020 | 37.745 | 204 | 115 | 3 | 13 | 206 | 159 | 360 | 5.25e-33 | 122 |
MS.gene067454.t1 | MTR_2g104560 | 41.117 | 197 | 103 | 6 | 15 | 206 | 22 | 210 | 9.04e-33 | 118 |
MS.gene067454.t1 | MTR_0246s0020 | 38.071 | 197 | 110 | 3 | 13 | 199 | 159 | 353 | 2.24e-32 | 120 |
MS.gene067454.t1 | MTR_4g066380 | 41.808 | 177 | 95 | 3 | 31 | 206 | 138 | 307 | 4.83e-32 | 118 |
MS.gene067454.t1 | MTR_5g014600 | 37.915 | 211 | 110 | 5 | 17 | 206 | 110 | 320 | 8.20e-32 | 118 |
MS.gene067454.t1 | MTR_5g014640 | 39.080 | 174 | 96 | 4 | 28 | 199 | 137 | 302 | 2.55e-31 | 116 |
MS.gene067454.t1 | MTR_6g047570 | 35.455 | 220 | 123 | 5 | 4 | 206 | 100 | 317 | 1.42e-30 | 115 |
MS.gene067454.t1 | MTR_2g104530 | 42.941 | 170 | 85 | 4 | 41 | 206 | 98 | 259 | 8.30e-30 | 111 |
MS.gene067454.t1 | MTR_2g104500 | 39.891 | 183 | 99 | 4 | 25 | 204 | 81 | 255 | 4.95e-28 | 107 |
MS.gene067454.t1 | MTR_4g092700 | 36.875 | 160 | 99 | 2 | 48 | 206 | 158 | 316 | 6.44e-28 | 107 |
MS.gene067454.t1 | MTR_0246s0050 | 34.762 | 210 | 119 | 7 | 7 | 206 | 101 | 302 | 1.03e-27 | 107 |
MS.gene067454.t1 | MTR_4g098035 | 34.762 | 210 | 119 | 7 | 7 | 206 | 122 | 323 | 1.44e-27 | 107 |
MS.gene067454.t1 | MTR_7g451650 | 35.849 | 159 | 77 | 6 | 53 | 206 | 44 | 182 | 3.17e-21 | 87.4 |
MS.gene067454.t1 | MTR_4g097950 | 37.778 | 180 | 100 | 4 | 32 | 199 | 49 | 228 | 4.34e-21 | 88.2 |
MS.gene067454.t1 | MTR_2g104620 | 49.324 | 148 | 33 | 4 | 13 | 158 | 62 | 169 | 6.58e-21 | 85.9 |
MS.gene067454.t1 | MTR_4g009420 | 37.179 | 156 | 77 | 5 | 52 | 206 | 47 | 182 | 1.39e-20 | 85.5 |
MS.gene067454.t1 | MTR_4g009510 | 38.994 | 159 | 82 | 8 | 50 | 206 | 45 | 190 | 1.71e-20 | 85.5 |
MS.gene067454.t1 | MTR_7g451650 | 35.032 | 157 | 77 | 6 | 53 | 204 | 44 | 180 | 5.42e-20 | 84.0 |
MS.gene067454.t1 | MTR_4g009420 | 36.364 | 154 | 77 | 5 | 52 | 204 | 47 | 180 | 3.58e-19 | 82.0 |
MS.gene067454.t1 | MTR_7g050350 | 34.559 | 136 | 69 | 4 | 77 | 207 | 1 | 121 | 6.95e-18 | 77.0 |
MS.gene067454.t1 | MTR_7g451650 | 34.559 | 136 | 69 | 4 | 77 | 207 | 1 | 121 | 6.95e-18 | 77.0 |
MS.gene067454.t1 | MTR_5g014550 | 38.095 | 126 | 76 | 2 | 78 | 202 | 54 | 178 | 2.77e-17 | 76.6 |
MS.gene067454.t1 | MTR_6g047550 | 39.516 | 124 | 60 | 4 | 4 | 112 | 114 | 237 | 8.32e-14 | 68.6 |
MS.gene067454.t1 | MTR_8g064700 | 25.980 | 204 | 133 | 8 | 6 | 197 | 201 | 398 | 8.77e-13 | 66.6 |
MS.gene067454.t1 | MTR_3g030700 | 27.219 | 169 | 113 | 5 | 37 | 199 | 188 | 352 | 7.73e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067454.t1 | AT4G37850 | 38.323 | 167 | 102 | 1 | 41 | 206 | 145 | 311 | 7.29e-33 | 120 |
MS.gene067454.t1 | AT4G37850 | 38.323 | 167 | 102 | 1 | 41 | 206 | 145 | 311 | 7.29e-33 | 120 |
MS.gene067454.t1 | AT2G22750 | 42.105 | 171 | 95 | 1 | 41 | 207 | 119 | 289 | 3.41e-31 | 115 |
MS.gene067454.t1 | AT2G22750 | 44.172 | 163 | 87 | 1 | 41 | 199 | 119 | 281 | 6.11e-31 | 115 |
MS.gene067454.t1 | AT2G22750 | 42.105 | 171 | 95 | 1 | 41 | 207 | 147 | 317 | 7.95e-31 | 115 |
MS.gene067454.t1 | AT2G22750 | 42.105 | 171 | 95 | 1 | 41 | 207 | 143 | 313 | 8.85e-31 | 115 |
MS.gene067454.t1 | AT2G22750 | 44.172 | 163 | 87 | 1 | 41 | 199 | 147 | 309 | 1.35e-30 | 115 |
MS.gene067454.t1 | AT2G22760 | 33.728 | 169 | 109 | 3 | 41 | 206 | 112 | 280 | 6.51e-25 | 99.4 |
MS.gene067454.t1 | AT2G22760 | 35.185 | 162 | 102 | 3 | 41 | 199 | 112 | 273 | 1.77e-24 | 97.8 |
MS.gene067454.t1 | AT2G22770 | 34.731 | 167 | 94 | 3 | 48 | 199 | 132 | 298 | 1.53e-22 | 93.2 |
MS.gene067454.t1 | AT4G29930 | 27.419 | 186 | 125 | 3 | 18 | 200 | 22 | 200 | 1.26e-14 | 70.5 |
MS.gene067454.t1 | AT4G29930 | 28.042 | 189 | 117 | 5 | 18 | 200 | 22 | 197 | 1.48e-14 | 70.1 |
MS.gene067454.t1 | AT4G29930 | 26.842 | 190 | 120 | 5 | 18 | 201 | 22 | 198 | 3.82e-14 | 68.9 |
MS.gene067454.t1 | AT4G17880 | 25.749 | 167 | 95 | 5 | 37 | 186 | 404 | 558 | 5.52e-14 | 70.5 |
MS.gene067454.t1 | AT5G46760 | 25.000 | 168 | 99 | 5 | 37 | 186 | 403 | 561 | 2.70e-13 | 68.2 |
MS.gene067454.t1 | AT4G29930 | 25.481 | 208 | 127 | 5 | 18 | 200 | 22 | 226 | 3.14e-13 | 67.0 |
MS.gene067454.t1 | AT5G57150 | 25.907 | 193 | 128 | 5 | 20 | 200 | 25 | 214 | 5.69e-13 | 66.2 |
MS.gene067454.t1 | AT4G29930 | 24.880 | 209 | 129 | 5 | 18 | 201 | 22 | 227 | 1.07e-12 | 65.5 |
MS.gene067454.t1 | AT4G29930 | 24.880 | 209 | 129 | 5 | 18 | 201 | 22 | 227 | 1.07e-12 | 65.5 |
MS.gene067454.t1 | AT5G57150 | 25.510 | 196 | 131 | 5 | 20 | 203 | 25 | 217 | 1.55e-12 | 64.7 |
MS.gene067454.t1 | AT5G57150 | 25.000 | 196 | 132 | 5 | 19 | 202 | 25 | 217 | 5.96e-12 | 62.8 |
MS.gene067454.t1 | AT4G09820 | 30.464 | 151 | 80 | 4 | 36 | 185 | 351 | 477 | 1.44e-11 | 63.2 |
MS.gene067454.t1 | AT5G57150 | 24.365 | 197 | 134 | 5 | 19 | 203 | 25 | 218 | 1.62e-11 | 61.6 |
MS.gene067454.t1 | AT5G41315 | 27.329 | 161 | 95 | 3 | 40 | 178 | 438 | 598 | 2.48e-11 | 62.8 |
MS.gene067454.t1 | AT5G41315 | 27.329 | 161 | 95 | 3 | 40 | 178 | 433 | 593 | 2.62e-11 | 62.4 |
MS.gene067454.t1 | AT5G41315 | 27.329 | 161 | 95 | 3 | 40 | 178 | 441 | 601 | 2.68e-11 | 62.4 |
MS.gene067454.t1 | AT1G63650 | 28.205 | 156 | 95 | 3 | 40 | 178 | 397 | 552 | 3.97e-11 | 62.0 |
MS.gene067454.t1 | AT1G63650 | 28.205 | 156 | 95 | 3 | 40 | 178 | 397 | 552 | 3.97e-11 | 62.0 |
MS.gene067454.t1 | AT1G63650 | 28.205 | 156 | 95 | 3 | 40 | 178 | 397 | 552 | 3.97e-11 | 62.0 |
MS.gene067454.t1 | AT5G57150 | 24.870 | 193 | 130 | 5 | 19 | 199 | 25 | 214 | 4.74e-11 | 60.8 |
Find 39 sgRNAs with CRISPR-Local
Find 64 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAGGTTGAAGCTAGGGTTCT+TGG | 0.268478 | 2.4:+962892 | MS.gene067454:CDS |
CAAGACATTGGTACTTGTTA+TGG | 0.311267 | 2.4:-963001 | None:intergenic |
ATTACTTGCCTGGGCAATAA+TGG | 0.348494 | 2.4:-963049 | None:intergenic |
AGTACCAATGTCTTGCCATT+TGG | 0.350019 | 2.4:+963009 | MS.gene067454:CDS |
CTTCTTCAATCCAGGTATAA+AGG | 0.361311 | 2.4:-962560 | None:intergenic |
AAGTAAGATCATAGAACTTT+CGG | 0.375512 | 2.4:+962537 | MS.gene067454:CDS |
ACATAATGTCGGAGAGGAAT+AGG | 0.390434 | 2.4:+962500 | MS.gene067454:CDS |
AGGTTGAAGCTAGGGTTCTT+GGG | 0.420139 | 2.4:+962893 | MS.gene067454:CDS |
ACGACTTGAAGAACGTTTGA+AGG | 0.420593 | 2.4:+962738 | MS.gene067454:CDS |
GAACTTTCGGCCTTTATACC+TGG | 0.434477 | 2.4:+962550 | MS.gene067454:CDS |
GCTTCTTTGAATTCGAACTT+TGG | 0.464787 | 2.4:-962450 | None:intergenic |
CTTTATACCTGGATTGAAGA+AGG | 0.465281 | 2.4:+962561 | MS.gene067454:CDS |
AATATTGATAATGAGTTGGT+TGG | 0.482070 | 2.4:-962369 | None:intergenic |
ATACTAACCTTCTTCAATCC+AGG | 0.486683 | 2.4:-962568 | None:intergenic |
TCATGGTGTTGTTCAATTGT+TGG | 0.495507 | 2.4:-962397 | None:intergenic |
TAGAACACGAGATCTTGTTA+TGG | 0.495583 | 2.4:-962806 | None:intergenic |
CACTTCTAGAGGTTGAAGCT+AGG | 0.500066 | 2.4:+962884 | MS.gene067454:CDS |
GACGTTAAGAAGAAAGATGC+AGG | 0.502121 | 2.4:+962772 | MS.gene067454:CDS |
AATGTCTCAGAAGCGCTTCG+AGG | 0.506140 | 2.4:-962472 | None:intergenic |
ACTTCTAGAGGTTGAAGCTA+GGG | 0.520330 | 2.4:+962885 | MS.gene067454:CDS |
TGCTAATCAAGATTCATTGT+GGG | 0.528677 | 2.4:+962923 | MS.gene067454:CDS |
ATGACAAAGGCAAAGAATCA+TGG | 0.529186 | 2.4:-962414 | None:intergenic |
AATGGCTGTGTAGATTGATA+AGG | 0.531973 | 2.4:+962681 | MS.gene067454:intron |
TGACATCACCATTATTGCCC+AGG | 0.532981 | 2.4:+963041 | MS.gene067454:CDS |
GTGAAATGAACACTGAAGAA+TGG | 0.542671 | 2.4:+962851 | MS.gene067454:CDS |
TTTGCCTTTGTCATCATCAA+CGG | 0.545210 | 2.4:+962423 | MS.gene067454:CDS |
ATTAACAAAGACACTGCAAT+CGG | 0.547823 | 2.4:+962829 | MS.gene067454:CDS |
ATGTCAAGAGTATTTCCAAA+TGG | 0.548099 | 2.4:-963024 | None:intergenic |
TGAAGCTAGGGTTCTTGGGA+AGG | 0.552443 | 2.4:+962897 | MS.gene067454:CDS |
ATTGAATATTGATAATGAGT+TGG | 0.559471 | 2.4:-962373 | None:intergenic |
ATTTCCAAATGGCAAGACAT+TGG | 0.571967 | 2.4:-963013 | None:intergenic |
TGATAAGGTTCATGTGGTAA+CGG | 0.571985 | 2.4:+962696 | MS.gene067454:CDS |
GTGCTAATCAAGATTCATTG+TGG | 0.576092 | 2.4:+962922 | MS.gene067454:CDS |
GACATTAGATCACATAATGT+CGG | 0.591474 | 2.4:+962489 | MS.gene067454:CDS |
GCGAAATGAATCACTTCTAG+AGG | 0.597091 | 2.4:+962873 | MS.gene067454:CDS |
TTATCCGTTGATGATGACAA+AGG | 0.681037 | 2.4:-962427 | None:intergenic |
TAGATCACATAATGTCGGAG+AGG | 0.685140 | 2.4:+962494 | MS.gene067454:CDS |
TGGGATGCAAGAAGAGATTG+TGG | 0.685234 | 2.4:+962942 | MS.gene067454:CDS |
GTAGATTGATAAGGTTCATG+TGG | 0.700450 | 2.4:+962690 | MS.gene067454:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATATATATATATATAAATT+TGG | - | chr2.4:963154-963173 | None:intergenic | 0.0% |
!! | AATATATATTATATTAAACC+TGG | + | chr2.4:962593-962612 | MS.gene067454:intron | 10.0% |
!! | ATATATATATATCTACAGAT+GGG | + | chr2.4:963163-963182 | MS.gene067454:intron | 15.0% |
!! | CTACAATAAAAATTATCTAA+TGG | + | chr2.4:962663-962682 | MS.gene067454:intron | 15.0% |
!! | TATATATATATATCTACAGA+TGG | + | chr2.4:963162-963181 | MS.gene067454:intron | 15.0% |
!!! | ATTTTTATAGTAGTTATCAT+TGG | + | chr2.4:962628-962647 | MS.gene067454:intron | 15.0% |
!!! | ATTGAATATTGATAATGAGT+TGG | - | chr2.4:962376-962395 | None:intergenic | 20.0% |
! | AAAAATTTACTCATTCATCC+AGG | - | chr2.4:962614-962633 | None:intergenic | 25.0% |
! | AAATCCAAATTGATTAGCAA+TGG | - | chr2.4:963320-963339 | None:intergenic | 25.0% |
! | AAGTAAGATCATAGAACTTT+CGG | + | chr2.4:962537-962556 | MS.gene067454:CDS | 25.0% |
!! | TGCTAATCAATTTGGATTTT+TGG | + | chr2.4:963321-963340 | MS.gene067454:intron | 25.0% |
!!! | AATATTGATAATGAGTTGGT+TGG | - | chr2.4:962372-962391 | None:intergenic | 25.0% |
AAAGCCATTGCTAATCAATT+TGG | + | chr2.4:963313-963332 | MS.gene067454:intron | 30.0% | |
AGTGAAAAAACTAAGAGTAG+TGG | + | chr2.4:963216-963235 | MS.gene067454:intron | 30.0% | |
ATTAACAAAGACACTGCAAT+CGG | + | chr2.4:962829-962848 | MS.gene067454:CDS | 30.0% | |
GAAGTGTGCATTTAGTATTT+GGG | + | chr2.4:963272-963291 | MS.gene067454:intron | 30.0% | |
GACATTAGATCACATAATGT+CGG | + | chr2.4:962489-962508 | MS.gene067454:CDS | 30.0% | |
TGAAGTGTGCATTTAGTATT+TGG | + | chr2.4:963271-963290 | MS.gene067454:intron | 30.0% | |
TGCTAATCAAGATTCATTGT+GGG | + | chr2.4:962923-962942 | MS.gene067454:CDS | 30.0% | |
TGGAAGAAATTTAAGAAGCA+TGG | + | chr2.4:963104-963123 | MS.gene067454:intron | 30.0% | |
! | TTAGTATTTGGGATTTGAGA+AGG | + | chr2.4:963283-963302 | MS.gene067454:intron | 30.0% |
!! | ATGTCAAGAGTATTTCCAAA+TGG | - | chr2.4:963027-963046 | None:intergenic | 30.0% |
!! | TTTTTGGTAATTACTTGCCT+GGG | - | chr2.4:963061-963080 | None:intergenic | 30.0% |
!!! | TTTTTTCACTAGTTCCTTCA+CGG | - | chr2.4:963206-963225 | None:intergenic | 30.0% |
!!! | TTTTTTGGTAATTACTTGCC+TGG | - | chr2.4:963062-963081 | None:intergenic | 30.0% |
AATGGCTGTGTAGATTGATA+AGG | + | chr2.4:962681-962700 | MS.gene067454:intron | 35.0% | |
ATACTAACCTTCTTCAATCC+AGG | - | chr2.4:962571-962590 | None:intergenic | 35.0% | |
ATGACAAAGGCAAAGAATCA+TGG | - | chr2.4:962417-962436 | None:intergenic | 35.0% | |
ATTTCCAAATGGCAAGACAT+TGG | - | chr2.4:963016-963035 | None:intergenic | 35.0% | |
CTTCTTCAATCCAGGTATAA+AGG | - | chr2.4:962563-962582 | None:intergenic | 35.0% | |
CTTTATACCTGGATTGAAGA+AGG | + | chr2.4:962561-962580 | MS.gene067454:CDS | 35.0% | |
GCTTCTTTGAATTCGAACTT+TGG | - | chr2.4:962453-962472 | None:intergenic | 35.0% | |
GTAGATTGATAAGGTTCATG+TGG | + | chr2.4:962690-962709 | MS.gene067454:intron | 35.0% | |
GTGAAATGAACACTGAAGAA+TGG | + | chr2.4:962851-962870 | MS.gene067454:CDS | 35.0% | |
GTGCTAATCAAGATTCATTG+TGG | + | chr2.4:962922-962941 | MS.gene067454:CDS | 35.0% | |
TAGAACACGAGATCTTGTTA+TGG | - | chr2.4:962809-962828 | None:intergenic | 35.0% | |
TGATAAGGTTCATGTGGTAA+CGG | + | chr2.4:962696-962715 | MS.gene067454:CDS | 35.0% | |
TTTGCCTTTGTCATCATCAA+CGG | + | chr2.4:962423-962442 | MS.gene067454:CDS | 35.0% | |
! | CAAGACATTGGTACTTGTTA+TGG | - | chr2.4:963004-963023 | None:intergenic | 35.0% |
! | TAAATACAAGTTGACCGTGA+AGG | + | chr2.4:963189-963208 | MS.gene067454:intron | 35.0% |
!! | TCATGGTGTTGTTCAATTGT+TGG | - | chr2.4:962400-962419 | None:intergenic | 35.0% |
!! | TTATCCGTTGATGATGACAA+AGG | - | chr2.4:962430-962449 | None:intergenic | 35.0% |
!!! | AATTTGGATTTTTGGTGTGC+AGG | + | chr2.4:963329-963348 | MS.gene067454:intron | 35.0% |
ACATAATGTCGGAGAGGAAT+AGG | + | chr2.4:962500-962519 | MS.gene067454:CDS | 40.0% | |
ACGACTTGAAGAACGTTTGA+AGG | + | chr2.4:962738-962757 | MS.gene067454:CDS | 40.0% | |
AGTACCAATGTCTTGCCATT+TGG | + | chr2.4:963009-963028 | MS.gene067454:CDS | 40.0% | |
ATTACTTGCCTGGGCAATAA+TGG | - | chr2.4:963052-963071 | None:intergenic | 40.0% | |
GACGTTAAGAAGAAAGATGC+AGG | + | chr2.4:962772-962791 | MS.gene067454:CDS | 40.0% | |
GCGAAATGAATCACTTCTAG+AGG | + | chr2.4:962873-962892 | MS.gene067454:CDS | 40.0% | |
TAGATCACATAATGTCGGAG+AGG | + | chr2.4:962494-962513 | MS.gene067454:CDS | 40.0% | |
! | ACTTCTAGAGGTTGAAGCTA+GGG | + | chr2.4:962885-962904 | MS.gene067454:CDS | 40.0% |
!!! | GATTTTTGGTGTGCAGGTTT+AGG | + | chr2.4:963335-963354 | MS.gene067454:intron | 40.0% |
AGGTTGAAGCTAGGGTTCTT+GGG | + | chr2.4:962893-962912 | MS.gene067454:CDS | 45.0% | |
GAACTTTCGGCCTTTATACC+TGG | + | chr2.4:962550-962569 | MS.gene067454:CDS | 45.0% | |
TGACATCACCATTATTGCCC+AGG | + | chr2.4:963041-963060 | MS.gene067454:CDS | 45.0% | |
TGGGATGCAAGAAGAGATTG+TGG | + | chr2.4:962942-962961 | MS.gene067454:CDS | 45.0% | |
! | CACTTCTAGAGGTTGAAGCT+AGG | + | chr2.4:962884-962903 | MS.gene067454:CDS | 45.0% |
!! | ATAATATATATATAATTTCA+TGG | + | chr2.4:963084-963103 | MS.gene067454:intron | 5.0% |
!!! | ATATATATATTATAGTTTTT+TGG | - | chr2.4:963077-963096 | None:intergenic | 5.0% |
AAGAGTAGTGGCTACGTTGC+AGG | + | chr2.4:963228-963247 | MS.gene067454:intron | 50.0% | |
GAGGTTGAAGCTAGGGTTCT+TGG | + | chr2.4:962892-962911 | MS.gene067454:CDS | 50.0% | |
TGAAGCTAGGGTTCTTGGGA+AGG | + | chr2.4:962897-962916 | MS.gene067454:CDS | 50.0% | |
!! | AATGTCTCAGAAGCGCTTCG+AGG | - | chr2.4:962475-962494 | None:intergenic | 50.0% |
GTGGCTACGTTGCAGGCATG+TGG | + | chr2.4:963235-963254 | MS.gene067454:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 962355 | 963373 | 962355 | ID=MS.gene067454 |
chr2.4 | mRNA | 962355 | 963373 | 962355 | ID=MS.gene067454.t1;Parent=MS.gene067454 |
chr2.4 | exon | 962355 | 962582 | 962355 | ID=MS.gene067454.t1.exon1;Parent=MS.gene067454.t1 |
chr2.4 | CDS | 962355 | 962582 | 962355 | ID=cds.MS.gene067454.t1;Parent=MS.gene067454.t1 |
chr2.4 | exon | 962694 | 963066 | 962694 | ID=MS.gene067454.t1.exon2;Parent=MS.gene067454.t1 |
chr2.4 | CDS | 962694 | 963066 | 962694 | ID=cds.MS.gene067454.t1;Parent=MS.gene067454.t1 |
chr2.4 | exon | 963351 | 963373 | 963351 | ID=MS.gene067454.t1.exon3;Parent=MS.gene067454.t1 |
chr2.4 | CDS | 963351 | 963373 | 963351 | ID=cds.MS.gene067454.t1;Parent=MS.gene067454.t1 |
Gene Sequence |
Protein sequence |