Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067455.t1 | RHN76574.1 | 92.3 | 222 | 13 | 3 | 1 | 220 | 1 | 220 | 1.00E-102 | 382.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067455.t1 | Q9T072 | 40.7 | 182 | 97 | 4 | 36 | 211 | 145 | 321 | 3.0e-26 | 120.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067455.t1 | G7IMB4 | 92.3 | 222 | 13 | 3 | 1 | 220 | 10 | 229 | 7.3e-103 | 382.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene067455.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067455.t1 | MTR_2g104560 | 92.342 | 222 | 13 | 3 | 1 | 220 | 10 | 229 | 4.42e-147 | 409 |
MS.gene067455.t1 | MTR_8g009020 | 46.231 | 199 | 94 | 3 | 31 | 219 | 131 | 326 | 5.91e-51 | 168 |
MS.gene067455.t1 | MTR_2g104550 | 47.291 | 203 | 91 | 4 | 24 | 217 | 118 | 313 | 6.42e-51 | 167 |
MS.gene067455.t1 | MTR_4g009540 | 47.692 | 195 | 86 | 3 | 33 | 216 | 142 | 331 | 7.66e-50 | 165 |
MS.gene067455.t1 | MTR_4g009110 | 47.396 | 192 | 88 | 3 | 33 | 216 | 164 | 350 | 1.35e-47 | 160 |
MS.gene067455.t1 | MTR_4g009540 | 49.425 | 174 | 72 | 3 | 33 | 195 | 142 | 310 | 9.73e-44 | 149 |
MS.gene067455.t1 | MTR_2g104490 | 45.641 | 195 | 93 | 4 | 24 | 212 | 117 | 304 | 4.42e-43 | 147 |
MS.gene067455.t1 | MTR_8g009010 | 42.365 | 203 | 79 | 4 | 10 | 211 | 102 | 267 | 8.28e-42 | 144 |
MS.gene067455.t1 | MTR_5g014600 | 43.316 | 187 | 85 | 5 | 42 | 211 | 148 | 330 | 1.26e-41 | 144 |
MS.gene067455.t1 | MTR_2g104590 | 43.056 | 216 | 90 | 10 | 5 | 211 | 28 | 219 | 3.49e-41 | 140 |
MS.gene067455.t1 | MTR_5g014520 | 42.553 | 188 | 94 | 4 | 36 | 216 | 150 | 330 | 1.61e-40 | 141 |
MS.gene067455.t1 | MTR_2g104500 | 44.828 | 174 | 89 | 3 | 44 | 216 | 105 | 272 | 2.65e-40 | 139 |
MS.gene067455.t1 | MTR_2g104530 | 43.956 | 182 | 94 | 4 | 33 | 212 | 95 | 270 | 6.29e-40 | 138 |
MS.gene067455.t1 | MTR_2g010450 | 43.258 | 178 | 90 | 4 | 40 | 211 | 174 | 346 | 8.07e-40 | 140 |
MS.gene067455.t1 | MTR_5g014640 | 41.304 | 184 | 101 | 4 | 34 | 215 | 145 | 323 | 8.52e-39 | 136 |
MS.gene067455.t1 | MTR_7g080780 | 45.745 | 188 | 92 | 4 | 33 | 219 | 141 | 319 | 9.97e-39 | 136 |
MS.gene067455.t1 | MTR_7g080780 | 45.745 | 188 | 92 | 4 | 33 | 219 | 154 | 332 | 1.48e-38 | 136 |
MS.gene067455.t1 | MTR_0250s0040 | 37.500 | 232 | 119 | 8 | 3 | 217 | 40 | 262 | 3.18e-38 | 133 |
MS.gene067455.t1 | MTR_0246s0020 | 41.584 | 202 | 100 | 7 | 26 | 217 | 183 | 376 | 3.19e-38 | 136 |
MS.gene067455.t1 | MTR_4g092700 | 40.449 | 178 | 90 | 4 | 42 | 211 | 157 | 326 | 3.34e-37 | 132 |
MS.gene067455.t1 | MTR_2g104490 | 45.506 | 178 | 84 | 4 | 24 | 195 | 117 | 287 | 4.72e-37 | 131 |
MS.gene067455.t1 | MTR_2g104650 | 43.519 | 216 | 93 | 8 | 13 | 211 | 61 | 264 | 1.56e-36 | 129 |
MS.gene067455.t1 | MTR_0011s0260 | 37.288 | 177 | 109 | 2 | 42 | 217 | 182 | 357 | 3.95e-36 | 130 |
MS.gene067455.t1 | MTR_4g097940 | 40.331 | 181 | 98 | 5 | 36 | 212 | 148 | 322 | 2.87e-35 | 127 |
MS.gene067455.t1 | MTR_6g047570 | 40.206 | 194 | 103 | 6 | 30 | 217 | 147 | 333 | 4.20e-35 | 127 |
MS.gene067455.t1 | MTR_0011s0210 | 37.288 | 177 | 109 | 2 | 42 | 217 | 182 | 357 | 5.56e-35 | 127 |
MS.gene067455.t1 | MTR_8g069740 | 44.505 | 182 | 76 | 5 | 27 | 194 | 95 | 265 | 6.31e-35 | 125 |
MS.gene067455.t1 | MTR_4g067010 | 36.702 | 188 | 114 | 2 | 30 | 217 | 136 | 318 | 3.49e-34 | 124 |
MS.gene067455.t1 | MTR_4g066460 | 39.894 | 188 | 108 | 2 | 30 | 217 | 144 | 326 | 5.44e-34 | 124 |
MS.gene067455.t1 | MTR_4g097920 | 38.462 | 182 | 100 | 5 | 36 | 212 | 133 | 307 | 1.07e-33 | 123 |
MS.gene067455.t1 | MTR_0246s0050 | 36.264 | 182 | 109 | 2 | 36 | 217 | 144 | 318 | 1.31e-33 | 123 |
MS.gene067455.t1 | MTR_4g098035 | 36.264 | 182 | 109 | 2 | 36 | 217 | 165 | 339 | 2.56e-33 | 122 |
MS.gene067455.t1 | MTR_4g097920 | 38.462 | 182 | 100 | 5 | 36 | 212 | 148 | 322 | 2.59e-33 | 122 |
MS.gene067455.t1 | MTR_4g066380 | 36.181 | 199 | 99 | 4 | 30 | 217 | 142 | 323 | 1.91e-32 | 120 |
MS.gene067455.t1 | MTR_5g014560 | 35.961 | 203 | 116 | 5 | 21 | 216 | 109 | 304 | 3.60e-32 | 119 |
MS.gene067455.t1 | MTR_0246s0020 | 40.659 | 182 | 90 | 7 | 26 | 197 | 183 | 356 | 1.72e-31 | 118 |
MS.gene067455.t1 | MTR_4g097950 | 40.212 | 189 | 90 | 4 | 44 | 217 | 71 | 251 | 1.28e-29 | 110 |
MS.gene067455.t1 | MTR_4g009510 | 37.725 | 167 | 92 | 4 | 46 | 211 | 45 | 200 | 7.56e-26 | 100 |
MS.gene067455.t1 | MTR_7g451650 | 37.671 | 146 | 81 | 2 | 66 | 211 | 57 | 192 | 2.71e-25 | 98.2 |
MS.gene067455.t1 | MTR_4g009420 | 35.849 | 159 | 83 | 4 | 53 | 211 | 53 | 192 | 2.15e-23 | 93.2 |
MS.gene067455.t1 | MTR_7g050350 | 36.429 | 140 | 79 | 2 | 72 | 211 | 1 | 130 | 8.58e-23 | 90.1 |
MS.gene067455.t1 | MTR_7g451650 | 36.429 | 140 | 79 | 2 | 72 | 211 | 1 | 130 | 8.58e-23 | 90.1 |
MS.gene067455.t1 | MTR_7g451650 | 38.806 | 134 | 72 | 2 | 66 | 199 | 57 | 180 | 1.25e-21 | 88.6 |
MS.gene067455.t1 | MTR_4g009420 | 36.735 | 147 | 74 | 4 | 53 | 199 | 53 | 180 | 1.56e-19 | 83.2 |
MS.gene067455.t1 | MTR_6g047550 | 52.174 | 69 | 32 | 1 | 30 | 98 | 161 | 228 | 5.82e-17 | 77.8 |
MS.gene067455.t1 | MTR_5g014550 | 36.434 | 129 | 68 | 4 | 73 | 194 | 54 | 175 | 4.04e-14 | 68.6 |
MS.gene067455.t1 | MTR_8g027495 | 23.563 | 174 | 124 | 3 | 44 | 217 | 459 | 623 | 9.07e-13 | 67.0 |
MS.gene067455.t1 | MTR_1g072320 | 28.777 | 139 | 91 | 2 | 44 | 174 | 471 | 609 | 1.14e-12 | 67.0 |
MS.gene067455.t1 | MTR_7g117670 | 25.294 | 170 | 118 | 4 | 44 | 213 | 403 | 563 | 1.35e-12 | 66.6 |
MS.gene067455.t1 | MTR_3g030700 | 26.667 | 225 | 147 | 6 | 2 | 219 | 160 | 373 | 1.25e-11 | 63.5 |
MS.gene067455.t1 | MTR_5g030430 | 29.787 | 188 | 107 | 8 | 44 | 214 | 494 | 673 | 4.25e-11 | 62.4 |
MS.gene067455.t1 | MTR_8g098275 | 47.273 | 55 | 29 | 0 | 44 | 98 | 245 | 299 | 5.98e-11 | 61.6 |
MS.gene067455.t1 | MTR_8g098275 | 47.273 | 55 | 29 | 0 | 44 | 98 | 309 | 363 | 7.86e-11 | 61.2 |
MS.gene067455.t1 | MTR_8g098275 | 47.273 | 55 | 29 | 0 | 44 | 98 | 402 | 456 | 9.13e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067455.t1 | AT4G37850 | 41.848 | 184 | 92 | 5 | 36 | 211 | 145 | 321 | 8.73e-35 | 126 |
MS.gene067455.t1 | AT4G37850 | 41.848 | 184 | 92 | 5 | 36 | 211 | 145 | 321 | 8.73e-35 | 126 |
MS.gene067455.t1 | AT2G22760 | 37.634 | 186 | 99 | 5 | 26 | 203 | 106 | 282 | 1.74e-34 | 124 |
MS.gene067455.t1 | AT2G22760 | 38.202 | 178 | 93 | 5 | 26 | 195 | 106 | 274 | 4.97e-32 | 118 |
MS.gene067455.t1 | AT2G22770 | 38.542 | 192 | 91 | 5 | 41 | 211 | 130 | 315 | 2.21e-31 | 117 |
MS.gene067455.t1 | AT2G22750 | 37.688 | 199 | 96 | 5 | 35 | 217 | 118 | 304 | 1.40e-29 | 112 |
MS.gene067455.t1 | AT2G22750 | 37.688 | 199 | 96 | 5 | 35 | 217 | 142 | 328 | 3.51e-29 | 111 |
MS.gene067455.t1 | AT2G22750 | 37.688 | 199 | 96 | 5 | 35 | 217 | 146 | 332 | 3.84e-29 | 111 |
MS.gene067455.t1 | AT2G22750 | 37.688 | 199 | 95 | 6 | 35 | 217 | 118 | 303 | 4.12e-28 | 108 |
MS.gene067455.t1 | AT2G22750 | 37.688 | 199 | 95 | 6 | 35 | 217 | 146 | 331 | 9.58e-28 | 107 |
MS.gene067455.t1 | AT4G09820 | 32.432 | 148 | 78 | 4 | 23 | 170 | 345 | 470 | 1.65e-15 | 75.1 |
MS.gene067455.t1 | AT5G46760 | 25.824 | 182 | 104 | 3 | 44 | 199 | 416 | 592 | 1.57e-12 | 66.6 |
MS.gene067455.t1 | AT1G63650 | 29.412 | 153 | 86 | 4 | 40 | 172 | 402 | 552 | 1.71e-12 | 66.2 |
MS.gene067455.t1 | AT1G63650 | 29.412 | 153 | 86 | 4 | 40 | 172 | 402 | 552 | 1.71e-12 | 66.2 |
MS.gene067455.t1 | AT1G63650 | 29.412 | 153 | 86 | 4 | 40 | 172 | 402 | 552 | 1.71e-12 | 66.2 |
MS.gene067455.t1 | AT5G41315 | 26.752 | 157 | 90 | 3 | 40 | 172 | 443 | 598 | 2.16e-12 | 66.2 |
MS.gene067455.t1 | AT5G41315 | 26.752 | 157 | 90 | 3 | 40 | 172 | 446 | 601 | 2.18e-12 | 66.2 |
MS.gene067455.t1 | AT5G41315 | 26.752 | 157 | 90 | 3 | 40 | 172 | 438 | 593 | 2.57e-12 | 65.9 |
MS.gene067455.t1 | AT2G46510 | 39.394 | 66 | 40 | 0 | 44 | 109 | 396 | 461 | 7.41e-12 | 64.3 |
MS.gene067455.t1 | AT1G01260 | 27.586 | 174 | 100 | 5 | 40 | 213 | 430 | 577 | 9.32e-12 | 64.3 |
MS.gene067455.t1 | AT1G01260 | 27.586 | 174 | 100 | 5 | 40 | 213 | 430 | 577 | 9.32e-12 | 64.3 |
MS.gene067455.t1 | AT1G01260 | 27.586 | 174 | 100 | 5 | 40 | 213 | 430 | 577 | 9.32e-12 | 64.3 |
MS.gene067455.t1 | AT5G57150 | 25.126 | 199 | 120 | 6 | 1 | 183 | 19 | 204 | 1.41e-11 | 62.0 |
MS.gene067455.t1 | AT5G57150 | 25.126 | 199 | 120 | 6 | 1 | 183 | 19 | 204 | 1.42e-11 | 62.4 |
MS.gene067455.t1 | AT1G12860 | 24.706 | 170 | 120 | 3 | 44 | 206 | 268 | 436 | 1.55e-11 | 63.5 |
MS.gene067455.t1 | AT5G57150 | 25.126 | 199 | 120 | 6 | 1 | 183 | 19 | 204 | 2.41e-11 | 62.0 |
MS.gene067455.t1 | AT4G29930 | 26.347 | 167 | 105 | 4 | 44 | 204 | 55 | 209 | 2.50e-11 | 61.6 |
MS.gene067455.t1 | AT5G57150 | 25.500 | 200 | 123 | 5 | 15 | 201 | 35 | 221 | 2.67e-11 | 61.6 |
MS.gene067455.t1 | AT4G17880 | 28.415 | 183 | 105 | 7 | 44 | 214 | 417 | 585 | 3.54e-11 | 62.4 |
MS.gene067455.t1 | AT4G29930 | 26.220 | 164 | 106 | 4 | 44 | 204 | 55 | 206 | 4.65e-11 | 60.8 |
MS.gene067455.t1 | AT5G57150 | 26.374 | 182 | 108 | 5 | 15 | 183 | 35 | 203 | 6.11e-11 | 60.5 |
Find 43 sgRNAs with CRISPR-Local
Find 77 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCATCCACGTAATGATAATT+TGG | 0.206550 | 2.4:-910228 | MS.gene067455:CDS |
ATGCCAATGGCCTCCACTTC+AGG | 0.214258 | 2.4:+910185 | None:intergenic |
CAGAAGCATCCAACAATAAT+AGG | 0.297499 | 2.4:-911433 | MS.gene067455:CDS |
ACATAATGTCAGAGAGAAAA+AGG | 0.300304 | 2.4:-911330 | MS.gene067455:CDS |
TTTCCATGTGTAGCAGCATT+AGG | 0.345086 | 2.4:+911391 | None:intergenic |
GAACAATGTCCTATTATTGT+TGG | 0.353321 | 2.4:+911424 | None:intergenic |
ATAGACAAGGTTTCTGTACT+TGG | 0.374394 | 2.4:-910368 | MS.gene067455:CDS |
ACCAGCAGTGTGCTTCCATT+TGG | 0.381044 | 2.4:-910056 | MS.gene067455:CDS |
GTTCAAACTATTGTCAATGC+TGG | 0.402081 | 2.4:-910102 | MS.gene067455:CDS |
AGAGAGATTCATAGCACTTT+CGG | 0.417342 | 2.4:-911293 | MS.gene067455:CDS |
GGCAGATGGGTGAGGAATAC+AGG | 0.417383 | 2.4:-909917 | MS.gene067455:intron |
ATTGATGACAAAGTTGAAAC+AGG | 0.417457 | 2.4:-909880 | MS.gene067455:CDS |
TTCAGGGAGGAGCACATGAT+TGG | 0.447101 | 2.4:+910202 | None:intergenic |
TGCCAATGGCCTCCACTTCA+GGG | 0.452486 | 2.4:+910186 | None:intergenic |
AAACATTACCTTAGCAATGA+TGG | 0.455229 | 2.4:+910013 | None:intergenic |
CTCCCTGAAGTGGAGGCCAT+TGG | 0.457623 | 2.4:-910188 | MS.gene067455:CDS |
CTACACATGGAAAGAATAAG+AGG | 0.462322 | 2.4:-911381 | MS.gene067455:CDS |
TGTTGGATGCTTCTGATTGA+AGG | 0.471742 | 2.4:+911441 | None:intergenic |
CTTCTCTGATTCTATGCCAA+TGG | 0.479471 | 2.4:+910172 | None:intergenic |
TCCAAATGGAAGCACACTGC+TGG | 0.484948 | 2.4:+910055 | None:intergenic |
TAAAGAACGCATATCAATGC+TGG | 0.499426 | 2.4:-910318 | MS.gene067455:CDS |
AGCAATGATGGTAATGTTGA+GGG | 0.515073 | 2.4:+910025 | None:intergenic |
TATGATACCCGGCTTGAAGA+AGG | 0.532421 | 2.4:-911269 | MS.gene067455:intron |
AAATGGAAGCACACTGCTGG+TGG | 0.542174 | 2.4:+910058 | None:intergenic |
GCACTTTCGGCTATGATACC+CGG | 0.547609 | 2.4:-911280 | MS.gene067455:CDS |
TCATGTGCTCCTCCCTGAAG+TGG | 0.548063 | 2.4:-910198 | MS.gene067455:CDS |
GGAACTGACCTTCTTCAAGC+CGG | 0.556400 | 2.4:+911261 | None:intergenic |
TAGCAATGATGGTAATGTTG+AGG | 0.557198 | 2.4:+910024 | None:intergenic |
GTGCCTAATGCTGCTACACA+TGG | 0.559444 | 2.4:-911394 | MS.gene067455:CDS |
TAAGAGGGTGAGAAGCTCAT+GGG | 0.563045 | 2.4:-911365 | MS.gene067455:CDS |
CAACATTACCATCATTGCTA+AGG | 0.570598 | 2.4:-910021 | MS.gene067455:intron |
ATAAGAGGGTGAGAAGCTCA+TGG | 0.579940 | 2.4:-911366 | MS.gene067455:CDS |
GAACTGACCTTCTTCAAGCC+GGG | 0.582458 | 2.4:+911262 | None:intergenic |
ATCAACTGCGAGAAACATGA+AGG | 0.584639 | 2.4:-910131 | MS.gene067455:CDS |
CACTGCTGGTGGAAACATAG+AGG | 0.588212 | 2.4:+910069 | None:intergenic |
TGTGCTCCTCCCTGAAGTGG+AGG | 0.603078 | 2.4:-910195 | MS.gene067455:CDS |
AGAAGCTCATGGGAGATACA+AGG | 0.603853 | 2.4:-911355 | MS.gene067455:CDS |
GAATCCAAATTATCATTACG+TGG | 0.646914 | 2.4:+910224 | None:intergenic |
CATTGGCATAGAATCAGAGA+AGG | 0.647651 | 2.4:-910171 | MS.gene067455:CDS |
TACACATGGAAAGAATAAGA+GGG | 0.651853 | 2.4:-911380 | MS.gene067455:CDS |
TGGAGCAACAATGTTATGAG+AGG | 0.657981 | 2.4:-910298 | MS.gene067455:CDS |
TTTACTTGTATAGATAGACA+AGG | 0.695353 | 2.4:-910381 | MS.gene067455:intron |
CAATGGCCTCCACTTCAGGG+AGG | 0.758935 | 2.4:+910189 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTAAATAATAAATTAACAC+AGG | - | chr2.4:910544-910563 | MS.gene067455:intron | 10.0% |
!!! | AAATTTTTTAATAGAGATTA+TGG | + | chr2.4:911061-911080 | None:intergenic | 10.0% |
!! | TTGATAAAATGTTAATTACA+TGG | - | chr2.4:911365-911384 | MS.gene067455:CDS | 15.0% |
!!! | AATAACTTTTTATAATGGAT+AGG | - | chr2.4:910166-910185 | MS.gene067455:CDS | 15.0% |
!!! | ATAATTAAGCTTGTTAATTT+TGG | + | chr2.4:910410-910429 | None:intergenic | 15.0% |
!! | AAACATGGAAATACTAAATA+TGG | - | chr2.4:910122-910141 | MS.gene067455:CDS | 20.0% |
!! | AAATAAAGAGTGAGAATAAA+AGG | - | chr2.4:910743-910762 | MS.gene067455:intron | 20.0% |
!! | AATAAAGAGTGAGAATAAAA+GGG | - | chr2.4:910744-910763 | MS.gene067455:intron | 20.0% |
!! | GACATAAAATAAATTAACAC+AGG | - | chr2.4:910474-910493 | MS.gene067455:intron | 20.0% |
!!! | TTAATTACATGGATTTTATG+TGG | - | chr2.4:911376-911395 | MS.gene067455:CDS | 20.0% |
!!! | TTCAAGTATTTTTGTTGATA+AGG | - | chr2.4:910795-910814 | MS.gene067455:intron | 20.0% |
!!! | TTTTTACACTCTTAAGTTTT+AGG | - | chr2.4:910863-910882 | MS.gene067455:intron | 20.0% |
! | ATATATTGAAGAAGAATTGC+AGG | + | chr2.4:910077-910096 | None:intergenic | 25.0% |
! | TTTACTTGTATAGATAGACA+AGG | - | chr2.4:910933-910952 | MS.gene067455:intron | 25.0% |
!! | CTAAATATGGATTAAACATG+AGG | - | chr2.4:910135-910154 | MS.gene067455:CDS | 25.0% |
!!! | GTTTTTTGTAGATCAAAACA+TGG | - | chr2.4:910107-910126 | MS.gene067455:CDS | 25.0% |
!!! | TGTCTTGTTCTTTTAAAGTA+AGG | + | chr2.4:910305-910324 | None:intergenic | 25.0% |
AAACATTACCTTAGCAATGA+TGG | + | chr2.4:911304-911323 | None:intergenic | 30.0% | |
ACATAATGTCAGAGAGAAAA+AGG | - | chr2.4:909984-910003 | MS.gene067455:intron | 30.0% | |
ATTATGACATGTGACTTATG+AGG | - | chr2.4:910832-910851 | MS.gene067455:intron | 30.0% | |
GAACAATGTCCTATTATTGT+TGG | + | chr2.4:909893-909912 | None:intergenic | 30.0% | |
GAATCCAAATTATCATTACG+TGG | + | chr2.4:911093-911112 | None:intergenic | 30.0% | |
GTAAATGTGAGTAACAAAGA+AGG | - | chr2.4:910452-910471 | MS.gene067455:intron | 30.0% | |
TACACATGGAAAGAATAAGA+GGG | - | chr2.4:909934-909953 | MS.gene067455:intron | 30.0% | |
TCATCCACGTAATGATAATT+TGG | - | chr2.4:911086-911105 | MS.gene067455:intron | 30.0% | |
TTTGTTACTCACATTTACAG+AGG | + | chr2.4:910450-910469 | None:intergenic | 30.0% | |
! | ATTGATGACAAAGTTGAAAC+AGG | - | chr2.4:911434-911453 | MS.gene067455:CDS | 30.0% |
! | TAAGTTTGAGTTCTTATGCT+TGG | + | chr2.4:910384-910403 | None:intergenic | 30.0% |
!!! | TTGAGGGTATTTTTTCCAAA+TGG | + | chr2.4:911276-911295 | None:intergenic | 30.0% |
AGAGAGATTCATAGCACTTT+CGG | - | chr2.4:910021-910040 | MS.gene067455:intron | 35.0% | |
ATAGACAAGGTTTCTGTACT+TGG | - | chr2.4:910946-910965 | MS.gene067455:intron | 35.0% | |
CAACATTACCATCATTGCTA+AGG | - | chr2.4:911293-911312 | MS.gene067455:CDS | 35.0% | |
CTACACATGGAAAGAATAAG+AGG | - | chr2.4:909933-909952 | MS.gene067455:intron | 35.0% | |
GAGAAAAAGGAGACAAGAAA+TGG | - | chr2.4:909997-910016 | MS.gene067455:intron | 35.0% | |
GTTCAAACTATTGTCAATGC+TGG | - | chr2.4:911212-911231 | MS.gene067455:intron | 35.0% | |
TAAAGAACGCATATCAATGC+TGG | - | chr2.4:910996-911015 | MS.gene067455:intron | 35.0% | |
TTAACACAGGTGATTTCACA+TGG | - | chr2.4:910487-910506 | MS.gene067455:intron | 35.0% | |
TTCCTTAATCCGTATGCAAT+TGG | + | chr2.4:910239-910258 | None:intergenic | 35.0% | |
! | AGCAATGATGGTAATGTTGA+GGG | + | chr2.4:911292-911311 | None:intergenic | 35.0% |
! | ATGGATTTTATGTGGCAGAT+GGG | - | chr2.4:911384-911403 | MS.gene067455:CDS | 35.0% |
! | TAGCAATGATGGTAATGTTG+AGG | + | chr2.4:911293-911312 | None:intergenic | 35.0% |
!! | AAGCGACACTCATTTTGAAA+CGG | + | chr2.4:910213-910232 | None:intergenic | 35.0% |
!! | CAGAAGCATCCAACAATAAT+AGG | - | chr2.4:909881-909900 | MS.gene067455:CDS | 35.0% |
ATCAACTGCGAGAAACATGA+AGG | - | chr2.4:911183-911202 | MS.gene067455:intron | 40.0% | |
CATTGGCATAGAATCAGAGA+AGG | - | chr2.4:911143-911162 | MS.gene067455:intron | 40.0% | |
CTTCTCTGATTCTATGCCAA+TGG | + | chr2.4:911145-911164 | None:intergenic | 40.0% | |
GTTACTCACATTTACAGAGG+AGG | + | chr2.4:910447-910466 | None:intergenic | 40.0% | |
TCGCTTTAGCCAATTGCATA+CGG | - | chr2.4:910227-910246 | MS.gene067455:CDS | 40.0% | |
TGGAGCAACAATGTTATGAG+AGG | - | chr2.4:911016-911035 | MS.gene067455:intron | 40.0% | |
TGTTGGATGCTTCTGATTGA+AGG | + | chr2.4:909876-909895 | None:intergenic | 40.0% | |
TTTCCATGTGTAGCAGCATT+AGG | + | chr2.4:909926-909945 | None:intergenic | 40.0% | |
! | AGCCAATTGCATACGGATTA+AGG | - | chr2.4:910234-910253 | MS.gene067455:CDS | 40.0% |
! | CATGGATTTTATGTGGCAGA+TGG | - | chr2.4:911383-911402 | MS.gene067455:CDS | 40.0% |
AGAAGCTCATGGGAGATACA+AGG | - | chr2.4:909959-909978 | MS.gene067455:intron | 45.0% | |
ATAAGAGGGTGAGAAGCTCA+TGG | - | chr2.4:909948-909967 | MS.gene067455:intron | 45.0% | |
GAGTTCTTATGCTTGGAGCT+TGG | + | chr2.4:910377-910396 | None:intergenic | 45.0% | |
TAAGAGGGTGAGAAGCTCAT+GGG | - | chr2.4:909949-909968 | MS.gene067455:intron | 45.0% | |
TTCTTATGCTTGGAGCTTGG+TGG | + | chr2.4:910374-910393 | None:intergenic | 45.0% | |
! | TATGATACCCGGCTTGAAGA+AGG | - | chr2.4:910045-910064 | MS.gene067455:CDS | 45.0% |
! | TTTTATGTGGCAGATGGGTG+AGG | - | chr2.4:911389-911408 | MS.gene067455:CDS | 45.0% |
!!! | ATTATAATAACTTTTTATAA+TGG | - | chr2.4:910161-910180 | MS.gene067455:CDS | 5.0% |
ACCAGCAGTGTGCTTCCATT+TGG | - | chr2.4:911258-911277 | MS.gene067455:intron | 50.0% | |
CACTGCTGGTGGAAACATAG+AGG | + | chr2.4:911248-911267 | None:intergenic | 50.0% | |
GAACTGACCTTCTTCAAGCC+GGG | + | chr2.4:910055-910074 | None:intergenic | 50.0% | |
GCACTTTCGGCTATGATACC+CGG | - | chr2.4:910034-910053 | MS.gene067455:CDS | 50.0% | |
GGAACTGACCTTCTTCAAGC+CGG | + | chr2.4:910056-910075 | None:intergenic | 50.0% | |
GTGCCTAATGCTGCTACACA+TGG | - | chr2.4:909920-909939 | MS.gene067455:intron | 50.0% | |
! | AAATGGAAGCACACTGCTGG+TGG | + | chr2.4:911259-911278 | None:intergenic | 50.0% |
! | TCCAAATGGAAGCACACTGC+TGG | + | chr2.4:911262-911281 | None:intergenic | 50.0% |
! | TTCAGGGAGGAGCACATGAT+TGG | + | chr2.4:911115-911134 | None:intergenic | 50.0% |
ATGCCAATGGCCTCCACTTC+AGG | + | chr2.4:911132-911151 | None:intergenic | 55.0% | |
GGCAGATGGGTGAGGAATAC+AGG | - | chr2.4:911397-911416 | MS.gene067455:CDS | 55.0% | |
TCATGTGCTCCTCCCTGAAG+TGG | - | chr2.4:911116-911135 | MS.gene067455:intron | 55.0% | |
TGCCAATGGCCTCCACTTCA+GGG | + | chr2.4:911131-911150 | None:intergenic | 55.0% | |
CAATGGCCTCCACTTCAGGG+AGG | + | chr2.4:911128-911147 | None:intergenic | 60.0% | |
CTCCCTGAAGTGGAGGCCAT+TGG | - | chr2.4:911126-911145 | MS.gene067455:intron | 60.0% | |
TGTGCTCCTCCCTGAAGTGG+AGG | - | chr2.4:911119-911138 | MS.gene067455:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 909854 | 911482 | 909854 | ID=MS.gene067455 |
chr2.4 | mRNA | 909854 | 911482 | 909854 | ID=MS.gene067455.t1;Parent=MS.gene067455 |
chr2.4 | exon | 911270 | 911482 | 911270 | ID=MS.gene067455.t1.exon1;Parent=MS.gene067455.t1 |
chr2.4 | CDS | 911270 | 911482 | 911270 | ID=cds.MS.gene067455.t1;Parent=MS.gene067455.t1 |
chr2.4 | exon | 910022 | 910390 | 910022 | ID=MS.gene067455.t1.exon2;Parent=MS.gene067455.t1 |
chr2.4 | CDS | 910022 | 910390 | 910022 | ID=cds.MS.gene067455.t1;Parent=MS.gene067455.t1 |
chr2.4 | exon | 909854 | 909934 | 909854 | ID=MS.gene067455.t1.exon3;Parent=MS.gene067455.t1 |
chr2.4 | CDS | 909854 | 909934 | 909854 | ID=cds.MS.gene067455.t1;Parent=MS.gene067455.t1 |
Gene Sequence |
Protein sequence |