AlfalfaGEDB | MS.gene067543

M. sativa cultivar XinJiangDaYe / MS.gene067543

KEGG: K09422
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00249.34

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067543.t1	XP_013461367.1	85.9	64	9	0	1	64	1	64	2.70E-24	120.6

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067543.t1	Q6R0C4	74.5	51	13	0	14	64	3	53	5.6e-18	90.9

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067543.t1	A0A072V0T7	85.9	64	9	0	1	64	1	64	2.0e-24	120.6

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene067543.t1	TF	MYB-related

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067543.t1	MTR_3g089045	85.938	64	9	0	1	64	1	64	3.59e-34	117
MS.gene067543.t1	MTR_7g086960	68.519	54	17	0	11	64	84	137	5.07e-23	89.4
MS.gene067543.t1	MTR_6g074860	72.549	51	14	0	14	64	2	52	2.14e-22	85.9
MS.gene067543.t1	MTR_4g082040	72.222	54	15	0	11	64	100	153	2.85e-22	87.8
MS.gene067543.t1	MTR_5g041570	70.370	54	16	0	11	64	129	182	4.91e-22	87.0
MS.gene067543.t1	MTR_6g027370	53.731	67	28	1	1	64	81	147	7.88e-20	80.5
MS.gene067543.t1	MTR_6g027340	64.583	48	17	0	17	64	17	64	2.09e-19	77.4
MS.gene067543.t1	MTR_6g027360	64.583	48	17	0	17	64	79	126	3.99e-19	78.2
MS.gene067543.t1	MTR_6g015455	54.167	48	22	0	17	64	6	53	6.34e-14	64.3
MS.gene067543.t1	MTR_4g019370	58.333	48	20	0	17	64	39	86	1.11e-13	63.5

Showing 1 to 10 of 19 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067543.t1	AT1G73410	76.471	51	12	14	64	4	54	5.42e-24	89.4
MS.gene067543.t1	AT1G73410	76.471	51	12	14	64	4	54	1.54e-23	89.0
MS.gene067543.t1	AT1G17950	74.510	51	13	14	64	3	53	3.97e-23	87.8
MS.gene067543.t1	AT1G69560	75.000	52	13	13	64	104	155	5.52e-22	86.3
MS.gene067543.t1	AT1G69560	75.000	52	13	13	64	120	171	7.00e-22	86.3
MS.gene067543.t1	AT1G26780	79.167	48	10	17	64	99	146	9.45e-22	84.7
MS.gene067543.t1	AT4G33450	69.231	52	16	13	64	16	67	2.50e-21	83.2
MS.gene067543.t1	AT1G26780	79.167	48	10	17	64	99	146	2.53e-21	84.7
MS.gene067543.t1	AT5G17800	65.455	55	19	10	64	87	141	6.58e-21	83.2
MS.gene067543.t1	AT3G29020	62.963	54	20	11	64	60	113	9.33e-21	81.6

Showing 1 to 10 of 30 entries

Previous1 2 3Next

Find 11 sgRNAs with CRISPR-Local

Find 21 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAATATGGTGCTCAAAAT+TGG	0.232647	3.2:-26078563	MS.gene067543:CDS
AACTTGTAGGGAAACGTTGT+AGG	0.477303	3.2:-26078290	MS.gene067543:intron
ACTTCCATAATCCATATGGA+GGG	0.628080	3.2:-26078672	None:intergenic
AGAGTTGTCCATGTGGTCAC+TGG	0.512701	3.2:-26078623	MS.gene067543:CDS
CCATATTGTTCAACAAGTTG+AGG	0.564383	3.2:+26078576	None:intergenic
CCTCAACTTGTTGAACAATA+TGG	0.300197	3.2:-26078576	MS.gene067543:CDS
GATACCAAGAGTTGTCCATG+TGG	0.733953	3.2:-26078630	MS.gene067543:CDS
GCGGGTCGCCAGTGACCACA+TGG	0.607822	3.2:+26078615	None:intergenic
GGAAACGTTGTAGGTTGAGG+TGG	0.592608	3.2:-26078281	MS.gene067543:CDS
GTGACCACATGGACAACTCT+TGG	0.543251	3.2:+26078626	None:intergenic

Showing 1 to 10 of 11 entries

Previous1 2Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AACAATATGGTGCTCAAAAT+TGG	-	chr3.2:26078354-26078373	MS.gene067543:intron	30.0%
ACGTTTCCCTACAAGTTAAA+AGG	+	chr3.2:26078624-26078643	None:intergenic	35.0%
CCATATTGTTCAACAAGTTG+AGG	+	chr3.2:26078344-26078363	None:intergenic	35.0%
TCAACTGCTGAAAAACTTCA+AGG	-	chr3.2:26078380-26078399	MS.gene067543:intron	35.0%
AACTTGTAGGGAAACGTTGT+AGG	-	chr3.2:26078627-26078646	MS.gene067543:CDS	40.0%
GAAAAACTTCAAGGAAGACC+AGG	-	chr3.2:26078389-26078408	MS.gene067543:intron	40.0%
GATACCAAGAGTTGTCCATG+TGG	-	chr3.2:26078287-26078306	MS.gene067543:intron	45.0%
TAGGGAAACGTTGTAGGTTG+AGG	-	chr3.2:26078633-26078652	MS.gene067543:CDS	45.0%
AGAGTTGTCCATGTGGTCAC+TGG	-	chr3.2:26078294-26078313	MS.gene067543:intron	50.0%
GTGACCACATGGACAACTCT+TGG	+	chr3.2:26078294-26078313	None:intergenic	50.0%

Showing 1 to 10 of 21 entries

Previous1 2 3Next

Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	26078260	26078679	26078260	ID=MS.gene067543
chr3.2	mRNA	26078260	26078679	26078260	ID=MS.gene067543.t1;Parent=MS.gene067543
chr3.2	exon	26078529	26078679	26078529	ID=MS.gene067543.t1.exon1;Parent=MS.gene067543.t1
chr3.2	CDS	26078529	26078679	26078529	ID=cds.MS.gene067543.t1;Parent=MS.gene067543.t1
chr3.2	exon	26078260	26078303	26078260	ID=MS.gene067543.t1.exon2;Parent=MS.gene067543.t1
chr3.2	CDS	26078260	26078303	26078260	ID=cds.MS.gene067543.t1;Parent=MS.gene067543.t1

Gene Sequence

>MS.gene067543

ATGGAGGGTTTTTCTTTTGCAGCTGAAGATACCAAGAGTTGTCCATGTGGTCACTGGCGACCCGCTGAAGATGAAAAACTTCCTCAACTTGTTGAACAATATGGTGCTCAAAATTGGAATTCAACTGCTGAAAAACTTCAAGGAAGACCAGGTATGTATTATGTAATATTAATTAAAGGTTTATTATTAATTGACTGATTGACCTCCTTATTTAATTTTCAAATTCATAGTAAAATTCATATAGTTGATTATTATGATCTCTTAAATTCATCTTGTACTCAACTAATATAGTTTTTCATCAATTAATTTTCTCATATACTTCTGTGTATAAAAGAAAAAATTAATCAATATATAATTTTTTCCTTTTAACTTGTAGGGAAACGTTGTAGGTTGAGGTGGTTCAATCAGCTAGATCCATGA

Protein sequence

>MS.gene067543.t1

MEGFSFAAEDTKSCPCGHWRPAEDEKLPQLVEQYGAQNWNSTAEKLQGRPGKRCRLRWFNQLDP