AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene067582

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene067582.t1 MTR_4g083680 98.276 174 3 0 1 174 1 174 4.65e-129 359
MS.gene067582.t1 MTR_2g068760 81.600 125 21 1 1 125 1 123 1.55e-72 216
MS.gene067582.t1 MTR_5g083230 73.874 111 29 0 11 121 2 112 1.48e-57 178
MS.gene067582.t1 MTR_3g071590 61.224 147 48 3 5 146 2 144 4.45e-57 176
MS.gene067582.t1 MTR_3g031660 65.000 120 42 0 11 130 3 122 4.92e-57 177
MS.gene067582.t1 MTR_2g093310 63.158 114 42 0 10 123 28 141 3.78e-52 165
MS.gene067582.t1 MTR_4g060950 66.667 111 36 1 14 123 23 133 1.50e-50 161
MS.gene067582.t1 MTR_6g005070 55.797 138 57 2 14 151 8 141 2.70e-49 156
MS.gene067582.t1 MTR_1g095850 67.290 107 35 0 16 122 73 179 1.09e-48 157
MS.gene067582.t1 MTR_3g094690 62.162 111 42 0 14 124 46 156 1.26e-47 155
MS.gene067582.t1 MTR_5g083960 62.727 110 41 0 5 114 29 138 1.84e-47 153
MS.gene067582.t1 MTR_3g077240 65.714 105 36 0 14 118 9 113 2.98e-47 152
MS.gene067582.t1 MTR_4g105170 65.385 104 36 0 14 117 10 113 4.81e-47 152
MS.gene067582.t1 MTR_6g005080 61.905 105 40 0 14 118 9 113 5.17e-47 150
MS.gene067582.t1 MTR_7g033800 64.078 103 37 0 14 116 10 112 6.10e-47 151
MS.gene067582.t1 MTR_3g094690 62.162 111 41 1 14 124 46 155 1.80e-45 149
MS.gene067582.t1 MTR_5g075020 62.097 124 46 1 14 137 42 164 6.39e-44 145
MS.gene067582.t1 MTR_5g075020 62.097 124 46 1 14 137 46 168 6.83e-44 145
MS.gene067582.t1 MTR_3g071420 62.376 101 38 0 12 112 11 111 3.44e-42 139
MS.gene067582.t1 MTR_3g073690 60.784 102 40 0 13 114 7 108 3.71e-42 140
MS.gene067582.t1 MTR_5g017950 63.366 101 37 0 14 114 7 107 1.22e-41 142
MS.gene067582.t1 MTR_5g083010 60.396 101 40 0 12 112 8 108 2.34e-41 137
MS.gene067582.t1 MTR_7g096530 56.481 108 46 1 11 117 10 117 1.56e-40 136
MS.gene067582.t1 MTR_8g040900 65.347 101 35 0 14 114 6 106 2.14e-40 136
MS.gene067582.t1 MTR_3g452660 60.396 101 40 0 14 114 6 106 6.62e-40 137
MS.gene067582.t1 MTR_1g070220 52.137 117 55 1 1 116 1 117 5.75e-39 132
MS.gene067582.t1 MTR_8g036105 54.867 113 48 2 2 113 7 117 7.41e-37 127
MS.gene067582.t1 MTR_7g028905 51.402 107 52 0 14 120 4 110 1.66e-36 123
MS.gene067582.t1 MTR_8g036085 56.566 99 42 1 15 112 23 121 1.35e-35 124
MS.gene067582.t1 MTR_5g093010 53.535 99 46 0 16 114 6 104 1.45e-35 121
MS.gene067582.t1 MTR_7g074990 55.446 101 44 1 15 114 20 120 8.05e-35 122
MS.gene067582.t1 MTR_6g027710 49.074 108 54 1 14 120 39 146 2.14e-34 120
MS.gene067582.t1 MTR_7g096610 52.830 106 49 1 11 115 4 109 2.00e-33 118
MS.gene067582.t1 MTR_1g070205 52.941 102 47 1 15 115 12 113 1.20e-32 116
MS.gene067582.t1 MTR_7g075230 52.632 114 43 3 3 113 8 113 1.41e-31 112
MS.gene067582.t1 MTR_5g080470 50.495 101 49 1 11 110 3 103 1.61e-31 112
MS.gene067582.t1 MTR_8g079660 40.152 132 74 2 15 141 8 139 5.64e-29 107
MS.gene067582.t1 MTR_4g107450 48.000 100 52 0 9 108 4 103 2.39e-28 107
MS.gene067582.t1 MTR_8g079620 42.063 126 70 2 15 137 8 133 4.88e-28 105
MS.gene067582.t1 MTR_6g027700 44.554 101 55 1 15 114 7 107 8.21e-28 103
MS.gene067582.t1 MTR_6g011250 35.821 134 77 3 16 141 10 142 1.34e-26 99.8
MS.gene067582.t1 MTR_6g011230 34.783 138 87 2 16 153 12 146 2.68e-26 99.4
MS.gene067582.t1 MTR_2g100020 38.462 104 64 0 11 114 15 118 4.63e-25 98.2
MS.gene067582.t1 MTR_8g017090 40.385 104 62 0 16 119 13 116 6.13e-25 98.2
MS.gene067582.t1 MTR_6g011200 47.500 80 41 1 16 94 10 89 1.38e-24 96.3
MS.gene067582.t1 MTR_8g079580 46.602 103 54 1 15 116 8 110 1.48e-24 95.5
MS.gene067582.t1 MTR_4g099230 43.617 94 48 2 16 104 3 96 3.64e-23 90.1
MS.gene067582.t1 MTR_5g085390 33.974 156 83 5 16 154 10 162 7.17e-22 88.6
MS.gene067582.t1 MTR_4g088035 38.372 86 53 0 16 101 7 92 9.70e-18 78.6
MS.gene067582.t1 MTR_2g094730 30.392 102 67 3 15 114 2 101 6.12e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene067582.t1 AT1G31320 74.713 174 40 2 1 174 1 170 2.61e-73 218
MS.gene067582.t1 AT2G30130 75.229 109 27 0 13 121 6 114 1.01e-57 179
MS.gene067582.t1 AT1G16530 54.237 177 55 6 6 174 5 163 3.34e-57 177
MS.gene067582.t1 AT5G63090 64.286 112 40 0 14 125 10 121 1.36e-49 158
MS.gene067582.t1 AT5G63090 64.286 112 40 0 14 125 10 121 1.36e-49 158
MS.gene067582.t1 AT5G63090 64.286 112 40 0 14 125 10 121 1.36e-49 158
MS.gene067582.t1 AT5G63090 64.286 112 40 0 14 125 10 121 1.36e-49 158
MS.gene067582.t1 AT1G07900 63.636 110 40 0 14 123 32 141 2.46e-48 155
MS.gene067582.t1 AT2G28500 62.162 111 42 0 14 124 54 164 4.00e-47 154
MS.gene067582.t1 AT2G30340 57.377 122 50 1 11 130 48 169 4.57e-47 154
MS.gene067582.t1 AT2G30340 57.851 121 49 1 12 130 50 170 5.29e-47 154
MS.gene067582.t1 AT3G27650 64.356 101 36 0 14 114 38 138 4.78e-46 148
MS.gene067582.t1 AT2G40470 62.281 114 43 0 14 127 19 132 2.78e-45 148
MS.gene067582.t1 AT2G40470 62.281 114 43 0 14 127 44 157 7.07e-45 147
MS.gene067582.t1 AT2G23660 61.905 105 40 0 12 116 2 106 5.45e-44 148
MS.gene067582.t1 AT2G23660 61.905 105 40 0 12 116 2 106 5.45e-44 148
MS.gene067582.t1 AT2G23660 61.905 105 40 0 12 116 2 106 5.45e-44 148
MS.gene067582.t1 AT5G66870 62.136 103 39 0 12 114 4 106 1.07e-41 142
MS.gene067582.t1 AT3G26660 54.867 113 49 1 16 126 6 118 7.55e-41 134
MS.gene067582.t1 AT3G26620 59.596 99 40 0 16 114 6 104 1.13e-40 134
MS.gene067582.t1 AT1G65620 65.347 101 35 0 14 114 8 108 6.64e-40 134
MS.gene067582.t1 AT1G65620 65.347 101 35 0 14 114 8 108 6.64e-40 134
MS.gene067582.t1 AT1G65620 65.347 101 35 0 14 114 8 108 6.64e-40 134
MS.gene067582.t1 AT1G65620 65.347 101 35 0 14 114 8 108 6.64e-40 134
MS.gene067582.t1 AT1G65620 65.347 101 35 0 14 114 8 108 6.64e-40 134
MS.gene067582.t1 AT3G11090 53.226 124 51 1 12 135 8 124 7.91e-40 133
MS.gene067582.t1 AT2G42430 52.174 115 54 1 1 114 1 115 8.36e-39 132
MS.gene067582.t1 AT3G03760 54.630 108 48 1 14 120 50 157 2.28e-37 130
MS.gene067582.t1 AT2G42440 46.565 131 69 1 11 140 3 133 4.34e-36 125
MS.gene067582.t1 AT4G00220 56.731 104 44 1 18 120 20 123 4.76e-36 125
MS.gene067582.t1 AT2G31310 52.830 106 49 1 11 115 3 108 6.06e-36 124
MS.gene067582.t1 AT4G00210 48.344 151 73 3 11 157 7 156 9.99e-36 124
MS.gene067582.t1 AT2G45410 59.794 97 38 1 18 113 19 115 2.36e-33 117
MS.gene067582.t1 AT2G45420 52.885 104 48 1 18 120 40 143 6.44e-33 118
MS.gene067582.t1 AT5G06080 54.639 97 43 1 13 108 5 101 1.31e-32 115
MS.gene067582.t1 AT3G58190 50.980 102 49 1 15 115 11 112 1.05e-31 114
MS.gene067582.t1 AT3G50510 47.059 102 54 0 13 114 10 111 1.62e-28 105
MS.gene067582.t1 AT3G50510 47.059 102 54 0 13 114 10 111 1.62e-28 105
MS.gene067582.t1 AT1G72980 43.269 104 59 0 11 114 9 112 5.09e-28 104
MS.gene067582.t1 AT3G13850 42.453 106 61 0 16 121 37 142 1.72e-27 104
MS.gene067582.t1 AT3G47870 42.453 106 61 0 9 114 30 135 5.66e-27 103
MS.gene067582.t1 AT5G35900 42.424 99 57 0 16 114 6 104 1.64e-24 95.1
MS.gene067582.t1 AT1G06280 38.462 91 56 0 16 106 25 115 1.35e-19 82.0
MS.gene067582.t1 AT2G19820 39.583 96 57 1 14 108 11 106 1.99e-19 79.7
MS.gene067582.t1 AT5G15060 40.449 89 49 2 1 86 3 90 9.89e-18 75.9
MS.gene067582.t1 AT1G36000 28.814 118 84 0 11 128 5 122 1.39e-14 67.0
MS.gene067582.t1 AT4G22700 35.238 105 64 3 12 114 2 104 3.63e-14 67.4
MS.gene067582.t1 AT2G19510 28.571 98 70 0 11 108 5 102 1.47e-12 61.6
MS.gene067582.t1 AT3G27940 32.432 74 50 0 13 86 3 76 4.77e-11 58.5
MS.gene067582.t1 AT3G27940 32.432 74 50 0 13 86 3 76 4.77e-11 58.5
MS.gene067582.t1 AT3G27940 32.432 74 50 0 13 86 3 76 4.77e-11 58.5

Find 42 sgRNAs with CRISPR-Local

Find 305 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCAAACTGCATCATCATTT+TGG 0.226194 4.1:+24349468 MS.gene067582:CDS
GCTAATGTTCACAAAGTCTT+TGG 0.302464 4.1:+24344789 MS.gene067582:CDS
CAGCTTGTGCTACAGCCAAT+TGG 0.314995 4.1:-24349424 None:intergenic
CCACTATAGGTTGGGCTAGT+TGG 0.351078 4.1:-24349509 None:intergenic
AGCTTGTGCTACAGCCAATT+GGG 0.355950 4.1:-24349423 None:intergenic
ATGCAGTTTGGCGCACCCTT+AGG 0.369688 4.1:-24349457 None:intergenic
CAATGTCAACAAGATGCTTC+AGG 0.375428 4.1:+24344818 MS.gene067582:CDS
AAGCTGAGGCAGTGCACCTA+AGG 0.409283 4.1:+24349441 MS.gene067582:CDS
GGCTCATCAGCAGGGAAGTA+AGG 0.414185 4.1:-24344756 None:intergenic
TCCAAAATGATGATGCAGTT+TGG 0.439033 4.1:-24349469 None:intergenic
AACTTGTGAGGCTCATCAGC+AGG 0.445267 4.1:-24344765 None:intergenic
GCATCCCCTCTTTGATGCTC+AGG 0.446024 4.1:-24349296 None:intergenic
CCAACTAGCCCAACCTATAG+TGG 0.448737 4.1:+24349509 MS.gene067582:CDS
TGATGATGGAGAGCCACTAT+AGG 0.449087 4.1:-24349522 None:intergenic
GACCCTGTGTATGGTTGTGT+GGG 0.491390 4.1:+24349359 MS.gene067582:CDS
ATGGAGAGCCACTATAGGTT+GGG 0.503486 4.1:-24349517 None:intergenic
GATGGAGAGCCACTATAGGT+TGG 0.533235 4.1:-24349518 None:intergenic
TTGAATCACCATAGGCAGCT+TGG 0.540807 4.1:-24349601 None:intergenic
TGATGTGCTACAAACCCAAT+TGG 0.547025 4.1:+24349409 MS.gene067582:CDS
AGACCCTGTGTATGGTTGTG+TGG 0.550798 4.1:+24349358 MS.gene067582:CDS
TAATTAACGAACATGAAAGA+AGG 0.557964 4.1:+24344645 None:intergenic
GCACATCAATCTGTTGCTGA+AGG 0.564578 4.1:-24349394 None:intergenic
GTGGTGGACCAAGCTGCCTA+TGG 0.571014 4.1:+24349593 MS.gene067582:CDS
CTTGCATGCAGCACAAGGTG+AGG 0.585794 4.1:-24344694 None:intergenic
AGAAGCTTGCATGCAGCACA+AGG 0.589929 4.1:-24344699 None:intergenic
AGAGTGAGAGACCCTGTGTA+TGG 0.596799 4.1:+24349350 MS.gene067582:CDS
ACTTACCTGAGCATCAAAGA+GGG 0.599006 4.1:+24349291 MS.gene067582:CDS
CACATCAATCTGTTGCTGAA+GGG 0.604124 4.1:-24349393 None:intergenic
GACTTACCTGAGCATCAAAG+AGG 0.607217 4.1:+24349290 MS.gene067582:CDS
AGCTGAGGCAGTGCACCTAA+GGG 0.612206 4.1:+24349442 MS.gene067582:CDS
TTAACGAACATGAAAGAAGG+TGG 0.619833 4.1:+24344648 None:intergenic
TGAACATTAGCAAACTTGTG+AGG 0.627465 4.1:-24344777 None:intergenic
CCCTGTGTATGGTTGTGTGG+GGG 0.627665 4.1:+24349361 MS.gene067582:CDS
TCACCACATTGAATCACCAT+AGG 0.629809 4.1:-24349609 None:intergenic
ACCCTGTGTATGGTTGTGTG+GGG 0.630122 4.1:+24349360 MS.gene067582:CDS
AGGGGATGCAGTGAGTAGCA+TGG 0.638211 4.1:+24349310 MS.gene067582:CDS
ACGAACATGAAAGAAGGTGG+AGG 0.638440 4.1:+24344651 None:intergenic
ATTGGCTGTAGCACAAGCTG+AGG 0.642416 4.1:+24349427 MS.gene067582:CDS
GGTGGAGGTAACAAGAAGCA+AGG 0.642495 4.1:+24344666 MS.gene067582:CDS
ACTTGTGAGGCTCATCAGCA+GGG 0.650475 4.1:-24344764 None:intergenic
CTTACCTGAGCATCAAAGAG+GGG 0.724679 4.1:+24349292 MS.gene067582:CDS
CTGCCTATGGTGATTCAATG+TGG 0.740247 4.1:+24349606 MS.gene067582:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATACTACATTATAATATT+AGG + chr4.1:24344974-24344993 MS.gene067582:intron 10.0%
!! CAAATATAGAAATAAATTAT+TGG + chr4.1:24347898-24347917 MS.gene067582:intron 10.0%
!!! AAAAAATATATTTTGCATTT+TGG - chr4.1:24345615-24345634 None:intergenic 10.0%
!!! AGTATTAATATTTATTTTTG+CGG + chr4.1:24345875-24345894 MS.gene067582:intron 10.0%
!!! TTTTAGAAAAGAAAAAAAAA+AGG + chr4.1:24347768-24347787 MS.gene067582:intron 10.0%
!! ACTGCAAAATTATTATTAAT+TGG - chr4.1:24346735-24346754 None:intergenic 15.0%
!! AGAAATAAATATGAACAATT+TGG - chr4.1:24346519-24346538 None:intergenic 15.0%
!! ATATTCTTTGATTATTATCA+TGG - chr4.1:24346763-24346782 None:intergenic 15.0%
!! CAAAAAATATTAGAAGAATA+AGG - chr4.1:24347725-24347744 None:intergenic 15.0%
!! CTGCAAAATTATTATTAATT+GGG - chr4.1:24346734-24346753 None:intergenic 15.0%
!! GTAATAAGTAGTTATAATTA+GGG + chr4.1:24345429-24345448 MS.gene067582:intron 15.0%
!! TAATAAGTAGTTATAATTAG+GGG + chr4.1:24345430-24345449 MS.gene067582:intron 15.0%
!! TATGTATAATATTAGATAGA+TGG - chr4.1:24345205-24345224 None:intergenic 15.0%
!! TATTCTTTGATTATTATCAT+GGG - chr4.1:24346762-24346781 None:intergenic 15.0%
!! TGTAATAAGTAGTTATAATT+AGG + chr4.1:24345428-24345447 MS.gene067582:intron 15.0%
!!! AATGAAGTATTTTAATGTTA+GGG + chr4.1:24346194-24346213 MS.gene067582:intron 15.0%
!!! ACTTAAAGTGATATTATTTT+TGG + chr4.1:24346634-24346653 MS.gene067582:intron 15.0%
!!! AGTAATTTTTTATTTCCTAA+TGG - chr4.1:24348619-24348638 None:intergenic 15.0%
!!! ATATTTTCTTAATAAGCAAA+TGG - chr4.1:24346414-24346433 None:intergenic 15.0%
!!! CATTATTCATTCATATTTTA+GGG - chr4.1:24348383-24348402 None:intergenic 15.0%
!!! CTTTAATTCATTTTCTTATT+GGG + chr4.1:24348451-24348470 MS.gene067582:intron 15.0%
!!! TAATGAAGTATTTTAATGTT+AGG + chr4.1:24346193-24346212 MS.gene067582:intron 15.0%
!!! TATTCTTCTAATATTTTTTG+AGG + chr4.1:24347725-24347744 MS.gene067582:intron 15.0%
!!! TCATTATTCATTCATATTTT+AGG - chr4.1:24348384-24348403 None:intergenic 15.0%
!!! TCTTTAATTCATTTTCTTAT+TGG + chr4.1:24348450-24348469 MS.gene067582:intron 15.0%
!!! TTAAAATTTTGATACATTGA+GGG + chr4.1:24346254-24346273 MS.gene067582:intron 15.0%
!!! TTTAAAATTTTGATACATTG+AGG + chr4.1:24346253-24346272 MS.gene067582:intron 15.0%
!! AAAAAATGAGATAAGATAAG+AGG + chr4.1:24347178-24347197 MS.gene067582:intron 20.0%
!! AATATATGTCACATATTATG+TGG + chr4.1:24348757-24348776 MS.gene067582:intron 20.0%
!! ACATTGATATTTGATATAGT+TGG - chr4.1:24349206-24349225 None:intergenic 20.0%
!! ATAATATAGGGTAGAAATAA+AGG - chr4.1:24344879-24344898 None:intergenic 20.0%
!! ATATATGTCACATATTATGT+GGG + chr4.1:24348758-24348777 MS.gene067582:intron 20.0%
!! ATCTAGACATTTGATATATA+TGG - chr4.1:24346292-24346311 None:intergenic 20.0%
!! ATTAAGAGACTATTATAACT+AGG - chr4.1:24346071-24346090 None:intergenic 20.0%
!! GTCAATTAAAAGAAATGAAT+TGG - chr4.1:24347481-24347500 None:intergenic 20.0%
!! TAATATAGGGTAGAAATAAA+GGG - chr4.1:24344878-24344897 None:intergenic 20.0%
!! TCTAGACATTTGATATATAT+GGG - chr4.1:24346291-24346310 None:intergenic 20.0%
!! TTAAGAGACTATTATAACTA+GGG - chr4.1:24346070-24346089 None:intergenic 20.0%
!! TTTCTTCATATTCCAATATT+AGG + chr4.1:24348321-24348340 MS.gene067582:intron 20.0%
!!! AATCACTTTTTGACAATTTT+TGG - chr4.1:24347430-24347449 None:intergenic 20.0%
!!! ATGTGATTTTTATTTTGGAT+CGG - chr4.1:24345499-24345518 None:intergenic 20.0%
!!! ATTACTTTAGTATTTTGAGA+AGG - chr4.1:24348042-24348061 None:intergenic 20.0%
!!! GAACAACTTGTTATAATATA+GGG - chr4.1:24344891-24344910 None:intergenic 20.0%
!!! TAATATTTATTTTTGCGGTT+CGG + chr4.1:24345880-24345899 MS.gene067582:intron 20.0%
!!! TACCTTTTCTAATTTTTCAA+GGG - chr4.1:24348239-24348258 None:intergenic 20.0%
!!! TGAACAACTTGTTATAATAT+AGG - chr4.1:24344892-24344911 None:intergenic 20.0%
!!! TTACTTTAGTATTTTGAGAA+GGG - chr4.1:24348041-24348060 None:intergenic 20.0%
!!! TTCACATAACATTGATTAAA+AGG + chr4.1:24346574-24346593 MS.gene067582:intron 20.0%
! AAAAAAAAAAGATAGGGAAG+TGG - chr4.1:24345365-24345384 None:intergenic 25.0%
! AAAATTAAAGCAAGAACAAG+AGG + chr4.1:24345292-24345311 MS.gene067582:intron 25.0%
! AACCCTTGAAAAATTAGAAA+AGG + chr4.1:24348234-24348253 MS.gene067582:intron 25.0%
! AATAAGAAGTGAGAAAAACA+AGG - chr4.1:24347333-24347352 None:intergenic 25.0%
! AATTCAATGTAATTACGTGT+CGG + chr4.1:24349033-24349052 MS.gene067582:intron 25.0%
! CAAATATATGCGGTTTAATT+TGG + chr4.1:24345573-24345592 MS.gene067582:intron 25.0%
! CAAATTAAACCGCATATATT+TGG - chr4.1:24345575-24345594 None:intergenic 25.0%
! CAATAAGCAAGTATATTGAA+AGG + chr4.1:24346155-24346174 MS.gene067582:intron 25.0%
! CACAAACACAGTAAAATAAT+AGG + chr4.1:24345684-24345703 MS.gene067582:intron 25.0%
! CTAGACATTTGATATATATG+GGG - chr4.1:24346290-24346309 None:intergenic 25.0%
! GTCCATATCAAAAATATGTT+TGG - chr4.1:24349570-24349589 None:intergenic 25.0%
! TAAGAGACTATTATAACTAG+GGG - chr4.1:24346069-24346088 None:intergenic 25.0%
! TCCAAAATAAAAATCACATG+CGG + chr4.1:24345500-24345519 MS.gene067582:intron 25.0%
! TCTTCATTTCACTTTCTATT+TGG + chr4.1:24348591-24348610 MS.gene067582:intron 25.0%
! TGATATCAGTTAACTTAAGT+GGG - chr4.1:24344939-24344958 None:intergenic 25.0%
! TTCTTATTGGTCAAAAACAA+TGG + chr4.1:24347345-24347364 MS.gene067582:intron 25.0%
! TTGATATCAGTTAACTTAAG+TGG - chr4.1:24344940-24344959 None:intergenic 25.0%
! TTGATCTCCTTATAAAAATG+TGG + chr4.1:24347003-24347022 MS.gene067582:intron 25.0%
!! ACAAGACTAAGAAAGTTTTA+TGG + chr4.1:24346322-24346341 MS.gene067582:intron 25.0%
!! CAAATCAAAAAGTATGCATT+AGG + chr4.1:24348410-24348429 MS.gene067582:intron 25.0%
!! CTACCTTTTCTAATTTTTCA+AGG - chr4.1:24348240-24348259 None:intergenic 25.0%
!! CTCATTACCACATTTTTATA+AGG - chr4.1:24347013-24347032 None:intergenic 25.0%
!! GATGATTTTGTGTATATCTT+AGG - chr4.1:24348800-24348819 None:intergenic 25.0%
!! TCTTTTGTACTGAAATAAGA+TGG - chr4.1:24345153-24345172 None:intergenic 25.0%
!! TGAAGATACTTTTCTCAAAA+GGG + chr4.1:24347855-24347874 MS.gene067582:intron 25.0%
!!! AATAGTAAAACTAGTTTTGG+AGG + chr4.1:24348148-24348167 MS.gene067582:intron 25.0%
!!! ACATATTTTTGATATGGACA+TGG + chr4.1:24349571-24349590 MS.gene067582:CDS 25.0%
!!! ACCAATAGTAAAACTAGTTT+TGG + chr4.1:24348145-24348164 MS.gene067582:intron 25.0%
!!! CAAATATATTCGGTTTTTTG+CGG + chr4.1:24345986-24346005 MS.gene067582:intron 25.0%
!!! CAAATGTGACACTTATTTTT+GGG + chr4.1:24346672-24346691 MS.gene067582:intron 25.0%
!!! CATTTCTTTTAATTGACTAC+TGG + chr4.1:24347484-24347503 MS.gene067582:intron 25.0%
!!! CTAGTTTTACTATTGGTTAT+AGG - chr4.1:24348142-24348161 None:intergenic 25.0%
!!! GATTCATTGATTTTTGATGA+TGG - chr4.1:24349539-24349558 None:intergenic 25.0%
!!! TCCAAAACTAGTTTTACTAT+TGG - chr4.1:24348149-24348168 None:intergenic 25.0%
!!! TGCCAAACATATTTTTGATA+TGG + chr4.1:24349565-24349584 MS.gene067582:CDS 25.0%
!!! TTGTTTTTCTCACTTCTTAT+TGG + chr4.1:24347332-24347351 MS.gene067582:intron 25.0%
AAAACAATGGAGAGAGAAAA+AGG + chr4.1:24347358-24347377 MS.gene067582:intron 30.0%
AAGGAAACATATTCAATGCT+TGG - chr4.1:24348711-24348730 None:intergenic 30.0%
AATAAAAATCACATGCGGTT+CGG + chr4.1:24345505-24345524 MS.gene067582:intron 30.0%
ATATCAGTTAACTTAAGTGG+GGG - chr4.1:24344937-24344956 None:intergenic 30.0%
ATATTAGGACATGACATTTG+TGG + chr4.1:24344989-24345008 MS.gene067582:intron 30.0%
ATTAGAAGAATAAGGATGTG+TGG - chr4.1:24347717-24347736 None:intergenic 30.0%
CAAACGCATCCAAATATATT+CGG + chr4.1:24345976-24345995 MS.gene067582:intron 30.0%
CGCAAAAAACCGAATATATT+TGG - chr4.1:24345988-24346007 None:intergenic 30.0%
GAATATGTAGAAGATAAGAG+TGG - chr4.1:24344853-24344872 None:intergenic 30.0%
GATATCAGTTAACTTAAGTG+GGG - chr4.1:24344938-24344957 None:intergenic 30.0%
GGTAAAATCAACACTCTATT+TGG - chr4.1:24346498-24346517 None:intergenic 30.0%
GTAAGTCCTGCAAATTAATA+AGG - chr4.1:24349277-24349296 None:intergenic 30.0%
TAAACCGCATATATTTGGAT+CGG - chr4.1:24345570-24345589 None:intergenic 30.0%
TAGAAAAGGTAGAAAAGATG+AGG + chr4.1:24348248-24348267 MS.gene067582:intron 30.0%
TCAAGGGTTATTACTTTACT+TGG - chr4.1:24348223-24348242 None:intergenic 30.0%
TGGACTTTGACAATGAAATA+AGG - chr4.1:24348730-24348749 None:intergenic 30.0%
TGTCAATTCGACAACTTATT+AGG - chr4.1:24347104-24347123 None:intergenic 30.0%
TGTGACATATATTTGTGACA+TGG - chr4.1:24348750-24348769 None:intergenic 30.0%
TTACTTGGAAAAAACCATTC+TGG - chr4.1:24348208-24348227 None:intergenic 30.0%
TTAGAAGAATAAGGATGTGT+GGG - chr4.1:24347716-24347735 None:intergenic 30.0%
TTCTTATTGGGATAACCAAT+AGG + chr4.1:24348463-24348482 MS.gene067582:intron 30.0%
TTTCCATTTGAGAAAAAGAC+AGG + chr4.1:24347827-24347846 MS.gene067582:intron 30.0%
! ATCTATTTGATGGCTATGTA+GGG + chr4.1:24345324-24345343 MS.gene067582:intron 30.0%
! CTACTGCACACAATTATTTT+GGG - chr4.1:24346443-24346462 None:intergenic 30.0%
! CTGAAGATACTTTTCTCAAA+AGG + chr4.1:24347854-24347873 MS.gene067582:intron 30.0%
! GAAGATACTTTTCTCAAAAG+GGG + chr4.1:24347856-24347875 MS.gene067582:intron 30.0%
! TCACATTGCAATTCTTTTTG+TGG + chr4.1:24348105-24348124 MS.gene067582:intron 30.0%
!! AAACTTTCTTAGTCTTGTTC+AGG - chr4.1:24346320-24346339 None:intergenic 30.0%
!! AACTTTCTTAGTCTTGTTCA+GGG - chr4.1:24346319-24346338 None:intergenic 30.0%
!! ACCGCATGTGATTTTTATTT+TGG - chr4.1:24345504-24345523 None:intergenic 30.0%
!! ACTTGTCCTTATTAATTTGC+AGG + chr4.1:24349268-24349287 MS.gene067582:intron 30.0%
!! AGACTAAGAAAGTTTTATGG+TGG + chr4.1:24346325-24346344 MS.gene067582:intron 30.0%
!! ATATGCGGTTTAATTTGGAT+CGG + chr4.1:24345578-24345597 MS.gene067582:intron 30.0%
!! ATTTTGATAGAGACTAGAGA+AGG - chr4.1:24349231-24349250 None:intergenic 30.0%
!! GCAAATGTGACACTTATTTT+TGG + chr4.1:24346671-24346690 MS.gene067582:intron 30.0%
!! TATTTTTGATATGGACATGG+TGG + chr4.1:24349574-24349593 MS.gene067582:CDS 30.0%
!!! CTTTTGAGAAAAGTATCTTC+AGG - chr4.1:24347856-24347875 None:intergenic 30.0%
!!! GTTTAATTTGGATCGGTTTT+TGG + chr4.1:24345585-24345604 MS.gene067582:intron 30.0%
!!! TTTGCGGTTTTATTTTGGAT+CGG + chr4.1:24346029-24346048 MS.gene067582:intron 30.0%
AAAAACCGCTAAGATCGAAT+CGG - chr4.1:24345943-24345962 None:intergenic 35.0%
AAACCAAAATTCTTTGGTCC+TGG + chr4.1:24347657-24347676 MS.gene067582:intron 35.0%
AAGAGAGAAGAGAGAGAAAA+TGG + chr4.1:24347585-24347604 MS.gene067582:intron 35.0%
AGATGAGACAGACCTAATAT+TGG - chr4.1:24348336-24348355 None:intergenic 35.0%
ATTTCTTAACATGTGCCCTA+AGG + chr4.1:24347999-24348018 MS.gene067582:intron 35.0%
CAATATTAGACAACTTCACG+TGG - chr4.1:24348676-24348695 None:intergenic 35.0%
CAATGATAATAGATGGTGTC+GGG - chr4.1:24346936-24346955 None:intergenic 35.0%
CATAAATGCCCACATATGTA+CGG + chr4.1:24348893-24348912 MS.gene067582:intron 35.0%
CCAAAATAATTGTGTGCAGT+AGG + chr4.1:24346441-24346460 MS.gene067582:intron 35.0%
CGAATATATTTGGATGCGTT+TGG - chr4.1:24345978-24345997 None:intergenic 35.0%
CTACTCAATTTCAGCTACAA+TGG + chr4.1:24346907-24346926 MS.gene067582:intron 35.0%
GCAATGATAATAGATGGTGT+CGG - chr4.1:24346937-24346956 None:intergenic 35.0%
GCTAATGTTCACAAAGTCTT+TGG + chr4.1:24344789-24344808 MS.gene067582:CDS 35.0%
GTACATATGTGGGCATTTAT+GGG - chr4.1:24348894-24348913 None:intergenic 35.0%
GTGACCAAACCAAAATTCTT+TGG + chr4.1:24347651-24347670 MS.gene067582:intron 35.0%
TACATATGTGGGCATTTATG+GGG - chr4.1:24348893-24348912 None:intergenic 35.0%
TAGAAGAATAAGGATGTGTG+GGG - chr4.1:24347715-24347734 None:intergenic 35.0%
TCATCTAACCGTACATATGT+GGG - chr4.1:24348904-24348923 None:intergenic 35.0%
TGAACATTAGCAAACTTGTG+AGG - chr4.1:24344780-24344799 None:intergenic 35.0%
TGTGTTTATAGGTCTTTGCA+GGG + chr4.1:24349088-24349107 MS.gene067582:intron 35.0%
TTCGCTGCAATGATAATAGA+TGG - chr4.1:24346943-24346962 None:intergenic 35.0%
TTGGAAAAAACCATTCTGGT+TGG - chr4.1:24348204-24348223 None:intergenic 35.0%
TTTCTTAACATGTGCCCTAA+GGG + chr4.1:24348000-24348019 MS.gene067582:intron 35.0%
! AAAAAACCATTCTGGTTGGT+TGG - chr4.1:24348200-24348219 None:intergenic 35.0%
! AATGATAATAGATGGTGTCG+GGG - chr4.1:24346935-24346954 None:intergenic 35.0%
! ACTTGCTTATTGTCACTTCA+GGG - chr4.1:24346147-24346166 None:intergenic 35.0%
! AGATCTTGCGTTTGTGTTTT+TGG - chr4.1:24348574-24348593 None:intergenic 35.0%
! ATACTTTTCTCAAAAGGGGA+AGG + chr4.1:24347860-24347879 MS.gene067582:intron 35.0%
! ATTAGGTCTGTCTCATCTTT+TGG + chr4.1:24348338-24348357 MS.gene067582:intron 35.0%
! CCTACTGCACACAATTATTT+TGG - chr4.1:24346444-24346463 None:intergenic 35.0%
! GATCTATTTGATGGCTATGT+AGG + chr4.1:24345323-24345342 MS.gene067582:intron 35.0%
! TACTTGCTTATTGTCACTTC+AGG - chr4.1:24346148-24346167 None:intergenic 35.0%
! TAGCCTGTCTTTTTCTCAAA+TGG - chr4.1:24347833-24347852 None:intergenic 35.0%
! TCCAAAATGATGATGCAGTT+TGG - chr4.1:24349472-24349491 None:intergenic 35.0%
! TTTTGCGGTTTTCGGTTTTT+TGG + chr4.1:24346001-24346020 MS.gene067582:intron 35.0%
!!! AGGACCAAAGAATTTTGGTT+TGG - chr4.1:24347658-24347677 None:intergenic 35.0%
!!! ATCGGTTTGCGGTTTTATTT+TGG + chr4.1:24346024-24346043 MS.gene067582:intron 35.0%
!!! ATTCGGTTTTTTGCGGTTTT+CGG + chr4.1:24345993-24346012 MS.gene067582:intron 35.0%
!!! GACACTTATTTTTGGGTAGA+GGG + chr4.1:24346679-24346698 MS.gene067582:intron 35.0%
!!! GGTTTTATTTTGGATCGGTT+TGG + chr4.1:24346034-24346053 MS.gene067582:intron 35.0%
!!! TGACACTTATTTTTGGGTAG+AGG + chr4.1:24346678-24346697 MS.gene067582:intron 35.0%
!!! TTTATTTTTGCGGTTCGGTT+CGG + chr4.1:24345885-24345904 MS.gene067582:intron 35.0%
AAGGAAGAGAAACACTTGTG+TGG - chr4.1:24347684-24347703 None:intergenic 40.0%
AATAAGGATGTGTGGGGATA+TGG - chr4.1:24347709-24347728 None:intergenic 40.0%
ACCATTCATTTCTCCACCTT+GGG + chr4.1:24348847-24348866 MS.gene067582:intron 40.0%
ACTTACCTGAGCATCAAAGA+GGG + chr4.1:24349291-24349310 MS.gene067582:CDS 40.0%
ACTTTCTATTTGGCGCCATT+AGG + chr4.1:24348601-24348620 MS.gene067582:intron 40.0%
AGAAATGAATGGTGACAGGT+GGG - chr4.1:24348840-24348859 None:intergenic 40.0%
AGTTAACCAATTAACGCCAC+CGG - chr4.1:24347218-24347237 None:intergenic 40.0%
CAACTGTCATAGTTATCCTG+AGG - chr4.1:24346390-24346409 None:intergenic 40.0%
CAATGTCAACAAGATGCTTC+AGG + chr4.1:24344818-24344837 MS.gene067582:CDS 40.0%
CACATCAATCTGTTGCTGAA+GGG - chr4.1:24349396-24349415 None:intergenic 40.0%
CCAATAGGAGTTTGTAAACG+TGG + chr4.1:24348478-24348497 MS.gene067582:intron 40.0%
CCACGTTTACAAACTCCTAT+TGG - chr4.1:24348481-24348500 None:intergenic 40.0%
CGAACCGATCCAAATATATG+CGG + chr4.1:24345563-24345582 MS.gene067582:intron 40.0%
CGCATATATTTGGATCGGTT+CGG - chr4.1:24345565-24345584 None:intergenic 40.0%
CGTACATATGTGGGCATTTA+TGG - chr4.1:24348895-24348914 None:intergenic 40.0%
CTGTGTTTATAGGTCTTTGC+AGG + chr4.1:24349087-24349106 MS.gene067582:intron 40.0%
CTTCACGTGGTGTATATAGA+AGG - chr4.1:24348663-24348682 None:intergenic 40.0%
GCTAAGATCGAATCGGATTT+CGG - chr4.1:24345936-24345955 None:intergenic 40.0%
GTATTGTTCTGATTCACCTC+AGG + chr4.1:24346371-24346390 MS.gene067582:intron 40.0%
GTCATCTAACCGTACATATG+TGG - chr4.1:24348905-24348924 None:intergenic 40.0%
TAAAGCAAGAACAAGAGGCA+GGG + chr4.1:24345297-24345316 MS.gene067582:intron 40.0%
TCACCACATTGAATCACCAT+AGG - chr4.1:24349612-24349631 None:intergenic 40.0%
TGATGTGCTACAAACCCAAT+TGG + chr4.1:24349409-24349428 MS.gene067582:CDS 40.0%
TTAAAGCAAGAACAAGAGGC+AGG + chr4.1:24345296-24345315 MS.gene067582:intron 40.0%
TTGACCGAGAAAATCTTGTG+TGG + chr4.1:24347515-24347534 MS.gene067582:intron 40.0%
TTGGGTAGAGGGAGTAAATT+AGG + chr4.1:24346690-24346709 MS.gene067582:intron 40.0%
! ACACAAGATTTTCTCGGTCA+AGG - chr4.1:24347516-24347535 None:intergenic 40.0%
! AGGACCACACAAGATTTTCT+CGG - chr4.1:24347522-24347541 None:intergenic 40.0%
! ATGTAATTACGTGTCGGTCT+CGG + chr4.1:24349039-24349058 MS.gene067582:intron 40.0%
! GAAATCCGATTCGATCTTAG+CGG + chr4.1:24345935-24345954 MS.gene067582:intron 40.0%
! GCCAAACTGCATCATCATTT+TGG + chr4.1:24349468-24349487 MS.gene067582:CDS 40.0%
! TTTTGATATGGACATGGTGG+TGG + chr4.1:24349577-24349596 MS.gene067582:CDS 40.0%
!! AGTGTTAACTTGTGCCCTTA+GGG - chr4.1:24348017-24348036 None:intergenic 40.0%
!! ATATTTGGATCGGTTCGGTT+CGG - chr4.1:24345560-24345579 None:intergenic 40.0%
!! CGGTTTTCGGTTTTTTGGAT+CGG + chr4.1:24346006-24346025 MS.gene067582:intron 40.0%
!! GGAGGAGTATCTGTGTTTAT+AGG + chr4.1:24349077-24349096 MS.gene067582:intron 40.0%
!! GTTATAATTAGGGGTGTTCG+CGG + chr4.1:24345439-24345458 MS.gene067582:intron 40.0%
!! TAGTGTTAACTTGTGCCCTT+AGG - chr4.1:24348018-24348037 None:intergenic 40.0%
!! TTTTAGGGATCACATGCACA+TGG - chr4.1:24348368-24348387 None:intergenic 40.0%
!!! CATCATTTTGGAACAGTGCA+GGG + chr4.1:24349480-24349499 MS.gene067582:CDS 40.0%
!!! TCATCATTTTGGAACAGTGC+AGG + chr4.1:24349479-24349498 MS.gene067582:CDS 40.0%
AAAGATAGGGAAGTGGCATG+TGG - chr4.1:24345358-24345377 None:intergenic 45.0%
AAAGCAAGAACAAGAGGCAG+GGG + chr4.1:24345298-24345317 MS.gene067582:intron 45.0%
AAATACCACTTGTGTGGACC+AGG - chr4.1:24347542-24347561 None:intergenic 45.0%
AACGATGTGAGGTTTGAACG+CGG - chr4.1:24348283-24348302 None:intergenic 45.0%
AAGATAGGGAAGTGGCATGT+GGG - chr4.1:24345357-24345376 None:intergenic 45.0%
ACCAAACCAACCAACCAGAA+TGG + chr4.1:24348191-24348210 MS.gene067582:intron 45.0%
AGAGGAATGCAAGCAAACTC+CGG + chr4.1:24347196-24347215 MS.gene067582:intron 45.0%
AGCTTGTGCTACAGCCAATT+GGG - chr4.1:24349426-24349445 None:intergenic 45.0%
ATGGAGAGCCACTATAGGTT+GGG - chr4.1:24349520-24349539 None:intergenic 45.0%
CACCATTCATTTCTCCACCT+TGG + chr4.1:24348846-24348865 MS.gene067582:intron 45.0%
CCATTCATTTCTCCACCTTG+GGG + chr4.1:24348848-24348867 MS.gene067582:intron 45.0%
CTGCCTATGGTGATTCAATG+TGG + chr4.1:24349606-24349625 MS.gene067582:CDS 45.0%
CTTACCTGAGCATCAAAGAG+GGG + chr4.1:24349292-24349311 MS.gene067582:CDS 45.0%
GAAATGAATGGTGACAGGTG+GGG - chr4.1:24348839-24348858 None:intergenic 45.0%
GACTTACCTGAGCATCAAAG+AGG + chr4.1:24349290-24349309 MS.gene067582:CDS 45.0%
GAGAAAATCTTGTGTGGTCC+TGG + chr4.1:24347521-24347540 MS.gene067582:intron 45.0%
GAGAAATGAATGGTGACAGG+TGG - chr4.1:24348841-24348860 None:intergenic 45.0%
GAGAGAAGAGAAGAGAGAGA+AGG + chr4.1:24347612-24347631 MS.gene067582:intron 45.0%
GCACATCAATCTGTTGCTGA+AGG - chr4.1:24349397-24349416 None:intergenic 45.0%
GCAGACAAAGAAACGATGTG+AGG - chr4.1:24348294-24348313 None:intergenic 45.0%
GTGACCAAATACCACTTGTG+TGG - chr4.1:24347548-24347567 None:intergenic 45.0%
GTGGAGAAATGAATGGTGAC+AGG - chr4.1:24348844-24348863 None:intergenic 45.0%
TATGTGGGCATTTATGGGGA+CGG - chr4.1:24348889-24348908 None:intergenic 45.0%
TGGTCCACACAAGTGGTATT+TGG + chr4.1:24347541-24347560 MS.gene067582:intron 45.0%
TTGAATCACCATAGGCAGCT+TGG - chr4.1:24349604-24349623 None:intergenic 45.0%
! AAGGGGAAGGCACAAGTTAA+TGG + chr4.1:24347873-24347892 MS.gene067582:intron 45.0%
! ACCATTCTGGTTGGTTGGTT+TGG - chr4.1:24348195-24348214 None:intergenic 45.0%
! CAGGTGGGGAGAATTTTGTA+TGG - chr4.1:24348825-24348844 None:intergenic 45.0%
! GGACCAGGACCAAAGAATTT+TGG - chr4.1:24347663-24347682 None:intergenic 45.0%
! TGTGCATGACCCTGACTTTT+GGG - chr4.1:24348512-24348531 None:intergenic 45.0%
! TTGTGCATGACCCTGACTTT+TGG - chr4.1:24348513-24348532 None:intergenic 45.0%
!! AAATCACATGCGGTTCGGTT+CGG + chr4.1:24345510-24345529 MS.gene067582:intron 45.0%
!! TGATGATGGAGAGCCACTAT+AGG - chr4.1:24349525-24349544 None:intergenic 45.0%
!! TTTGGTGTGGACATGGCTTT+TGG - chr4.1:24348177-24348196 None:intergenic 45.0%
!!! CGGTTTTTTGGATCGGTTTG+CGG + chr4.1:24346013-24346032 MS.gene067582:intron 45.0%
!! ATATATAAAAAAAAAAAGAT+AGG - chr4.1:24345372-24345391 None:intergenic 5.0%
!! TATATAAAAAAAAAAAGATA+GGG - chr4.1:24345371-24345390 None:intergenic 5.0%
AACTTGTGAGGCTCATCAGC+AGG - chr4.1:24344768-24344787 None:intergenic 50.0%
ACCCTGTGTATGGTTGTGTG+GGG + chr4.1:24349360-24349379 MS.gene067582:CDS 50.0%
ACTTGTGAGGCTCATCAGCA+GGG - chr4.1:24344767-24344786 None:intergenic 50.0%
AGAAGCTTGCATGCAGCACA+AGG - chr4.1:24344702-24344721 None:intergenic 50.0%
AGACCCTGTGTATGGTTGTG+TGG + chr4.1:24349358-24349377 MS.gene067582:CDS 50.0%
AGAGTGAGAGACCCTGTGTA+TGG + chr4.1:24349350-24349369 MS.gene067582:CDS 50.0%
AGATAGGGAAGTGGCATGTG+GGG - chr4.1:24345356-24345375 None:intergenic 50.0%
ATGGGAAAATCTCCCCAAGG+TGG - chr4.1:24348863-24348882 None:intergenic 50.0%
ATGTGGGCATTTATGGGGAC+GGG - chr4.1:24348888-24348907 None:intergenic 50.0%
ATTGGCTGTAGCACAAGCTG+AGG + chr4.1:24349427-24349446 MS.gene067582:CDS 50.0%
CAAACTCCGGTGGCGTTAAT+TGG + chr4.1:24347209-24347228 MS.gene067582:intron 50.0%
CACTTGTCACAACGACACGT+TGG - chr4.1:24346974-24346993 None:intergenic 50.0%
CAGCTTGTGCTACAGCCAAT+TGG - chr4.1:24349427-24349446 None:intergenic 50.0%
CATTTATGGGGACGGGACAT+GGG - chr4.1:24348881-24348900 None:intergenic 50.0%
CCAACTAGCCCAACCTATAG+TGG + chr4.1:24349509-24349528 MS.gene067582:CDS 50.0%
CCCCAAGGTGGAGAAATGAA+TGG - chr4.1:24348851-24348870 None:intergenic 50.0%
GACATGGGAAAATCTCCCCA+AGG - chr4.1:24348866-24348885 None:intergenic 50.0%
GACCCTGTGTATGGTTGTGT+GGG + chr4.1:24349359-24349378 MS.gene067582:CDS 50.0%
GAGAAACACTTGTGTGGACC+AGG - chr4.1:24347678-24347697 None:intergenic 50.0%
GATGGAGAGCCACTATAGGT+TGG - chr4.1:24349521-24349540 None:intergenic 50.0%
GATGTGTGGGGATATGGTCA+AGG - chr4.1:24347703-24347722 None:intergenic 50.0%
GGTGGAGGTAACAAGAAGCA+AGG + chr4.1:24344666-24344685 MS.gene067582:CDS 50.0%
GTATTGCCCCCCAAAAGTCA+GGG + chr4.1:24348500-24348519 MS.gene067582:intron 50.0%
TCTCGGACACTGAAAGTTGG+AGG + chr4.1:24349056-24349075 MS.gene067582:intron 50.0%
TTAGATGACCCTGCAGGACA+GGG + chr4.1:24348916-24348935 MS.gene067582:intron 50.0%
! GTGCATGACCCTGACTTTTG+GGG - chr4.1:24348511-24348530 None:intergenic 50.0%
! TGCATGACCCTGACTTTTGG+GGG - chr4.1:24348510-24348529 None:intergenic 50.0%
!! CCACTATAGGTTGGGCTAGT+TGG - chr4.1:24349512-24349531 None:intergenic 50.0%
!! TCTGGTTGGTTGGTTTGGTG+TGG - chr4.1:24348190-24348209 None:intergenic 50.0%
!! TGCGGTTTGGATCGGTTTTG+AGG + chr4.1:24345462-24345481 MS.gene067582:intron 50.0%
!! TGGTTGGTTTGGTGTGGACA+TGG - chr4.1:24348184-24348203 None:intergenic 50.0%
!!! TTTTGCGGTTCGGTTCGGTT+TGG + chr4.1:24345890-24345909 MS.gene067582:intron 50.0%
AAGCTGAGGCAGTGCACCTA+AGG + chr4.1:24349441-24349460 MS.gene067582:CDS 55.0%
AGCTGAGGCAGTGCACCTAA+GGG + chr4.1:24349442-24349461 MS.gene067582:CDS 55.0%
AGGGGATGCAGTGAGTAGCA+TGG + chr4.1:24349310-24349329 MS.gene067582:CDS 55.0%
ATGCAGTTTGGCGCACCCTT+AGG - chr4.1:24349460-24349479 None:intergenic 55.0%
CATCATACCCCTGTCCTGCA+GGG - chr4.1:24348927-24348946 None:intergenic 55.0%
CCCCCACACAACCATACACA+GGG - chr4.1:24349364-24349383 None:intergenic 55.0%
CCCTGTGTATGGTTGTGTGG+GGG + chr4.1:24349361-24349380 MS.gene067582:CDS 55.0%
CGGACACTGAAAGTTGGAGG+AGG + chr4.1:24349059-24349078 MS.gene067582:intron 55.0%
CGGTCTCGGACACTGAAAGT+TGG + chr4.1:24349053-24349072 MS.gene067582:intron 55.0%
CTTGCATGCAGCACAAGGTG+AGG - chr4.1:24344697-24344716 None:intergenic 55.0%
GCAGGGGCGGATCTATTTGA+TGG + chr4.1:24345314-24345333 MS.gene067582:intron 55.0%
GCATCCCCTCTTTGATGCTC+AGG - chr4.1:24349299-24349318 None:intergenic 55.0%
GCATTTATGGGGACGGGACA+TGG - chr4.1:24348882-24348901 None:intergenic 55.0%
GGAATGCAAGCAAACTCCGG+TGG + chr4.1:24347199-24347218 MS.gene067582:intron 55.0%
GGCTCATCAGCAGGGAAGTA+AGG - chr4.1:24344759-24344778 None:intergenic 55.0%
GGTATTGCCCCCCAAAAGTC+AGG + chr4.1:24348499-24348518 MS.gene067582:intron 55.0%
GTACGGTTAGATGACCCTGC+AGG + chr4.1:24348910-24348929 MS.gene067582:intron 55.0%
GTTAGATGACCCTGCAGGAC+AGG + chr4.1:24348915-24348934 MS.gene067582:intron 55.0%
TAGATGACCCTGCAGGACAG+GGG + chr4.1:24348917-24348936 MS.gene067582:intron 55.0%
! GCATGACCCTGACTTTTGGG+GGG - chr4.1:24348509-24348528 None:intergenic 55.0%
!! AATTAGGGGTGTTCGCGGTG+CGG + chr4.1:24345444-24345463 MS.gene067582:intron 55.0%
!! ACATGCGGTTCGGTTCGGTT+TGG + chr4.1:24345515-24345534 MS.gene067582:intron 55.0%
!! CGGTTCGGTTCGGTTTGGTT+CGG + chr4.1:24345895-24345914 MS.gene067582:intron 55.0%
GCAAGAACAAGAGGCAGGGG+CGG + chr4.1:24345301-24345320 MS.gene067582:intron 60.0%
GCATCATACCCCTGTCCTGC+AGG - chr4.1:24348928-24348947 None:intergenic 60.0%
GCCCCCACACAACCATACAC+AGG - chr4.1:24349365-24349384 None:intergenic 60.0%
GTGGTCCTGGTCCACACAAG+TGG + chr4.1:24347534-24347553 MS.gene067582:intron 60.0%
! GTTCGCGGTGCGGTTTGGAT+CGG + chr4.1:24345454-24345473 MS.gene067582:intron 60.0%
!! GTGGTGGACCAAGCTGCCTA+TGG + chr4.1:24349593-24349612 MS.gene067582:CDS 60.0%
! GGGGTGTTCGCGGTGCGGTT+TGG + chr4.1:24345449-24345468 MS.gene067582:intron 70.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 24344657 24349631 24344657 ID=MS.gene067582
chr4.1 mRNA 24344657 24349631 24344657 ID=MS.gene067582.t1;Parent=MS.gene067582
chr4.1 exon 24344657 24344839 24344657 ID=MS.gene067582.t1.exon1;Parent=MS.gene067582.t1
chr4.1 CDS 24344657 24344839 24344657 ID=cds.MS.gene067582.t1;Parent=MS.gene067582.t1
chr4.1 exon 24349290 24349631 24349290 ID=MS.gene067582.t1.exon2;Parent=MS.gene067582.t1
chr4.1 CDS 24349290 24349631 24349290 ID=cds.MS.gene067582.t1;Parent=MS.gene067582.t1
Gene Sequence

>MS.gene067582

ATGAAAGAAGGTGGAGGTAACAAGAAGCAAGGTGCAGCCTCACCTTGTGCTGCATGCAAGCTTCTCAGAAGAAGATGTGCTCAAGATTGTCTCTTTGCTCCTTACTTCCCTGCTGATGAGCCTCACAAGTTTGCTAATGTTCACAAAGTCTTTGGTGCTAGCAATGTCAACAAGATGCTTCAGGTAATTCATTCCACTCTTATCTTCTACATATTCAACCCTTTATTTCTACCCTATATTATAACAAGTTGTTCAATTAATGCTATTACTTTTGTCACCCCCACTTAAGTTAACTGATATCAATTCTTACTCTATTCATATACTACATTATAATATTAGGACATGACATTTGTGGTACTGTAGTTGTAATAAGACTGATGCGACAAAATACTATTTTCAGAATAGATTTAAATTTTTCAGTTTTAATTACAACTATAATAATAATAATAATAATAATAATAATAATAATAATAATACTAAAAATATGAAAATTCCATCTTATTTCAGTACAAAAGAAGATGAAATCACTTTTTTTTTCTTCTTTTCCATCTATCTAATATTATACATATAACTTTGAAAATAAGAAAGATTATAAAGATGAGATGAGATGAGACGATACGATATCTATATAAATAAAAATTAAAGCAAGAACAAGAGGCAGGGGCGGATCTATTTGATGGCTATGTAGGGCTAAAGCCCCACATGCCACTTCCCTATCTTTTTTTTTTTATATATTATAAAAACGATAATAGTCACTTTGAACTCTGAATGTGTAATAAGTAGTTATAATTAGGGGTGTTCGCGGTGCGGTTTGGATCGGTTTTGAGGCAAAATGTCAACCGATCCAAAATAAAAATCACATGCGGTTCGGTTCGGTTTGGATGAGTATTCTAAAAAAATCCGAACCGAACCGATCCAAATATATGCGGTTTAATTTGGATCGGTTTTTGGATGTCCAAAATGCAAAATATATTTTTTTATTTACTCTTTTTTGAAGAATATAATTTTTTTATTAATATTAATATTACACAAACACAGTAAAATAATAGGTTTGATGCAAAATATATTAAAAAAATAAAATTATAGTATGAAAATTATCGATTATTTTTTAAACATATGAAGTAATAATAATATAGATTAAATTAGTGCAATGTATAAGATTAAAATTTAACAAACAACATAATAATGCAATCTATAATACTAATAAAAGAATAAATAAGTATTAATATTTATTTTTGCGGTTCGGTTCGGTTTGGTTCGGTTTTGAAAAAGTGATCCGAAATCCGATTCGATCTTAGCGGTTTTTACAAAACAACATCCAAACGCATCCAAATATATTCGGTTTTTTGCGGTTTTCGGTTTTTTGGATCGGTTTGCGGTTTTATTTTGGATCGGTTTGGACTTGAACACCCCTAGTTATAATAGTCTCTTAATGTATTAAAATTTTAAAATAGTTCTTGATTTTGTATTTTGTTAGTCATAATAGTCCCTGAAGTGACAATAAGCAAGTATATTGAAAGGCTAATATAACAATATTAATGAAGTATTTTAATGTTAGGGACTATTTTGATTAACGACGTGTACAATCAGAGAAAATTTAAAATTTTGATACATTGAGGGACTATTTTAGCCCCATATATATCAAATGTCTAGATCTGTCCCTGAACAAGACTAAGAAAGTTTTATGGTGGTATCATATCAAATAAATACTGATGTATTGTTCTGATTCACCTCAGGATAACTATGACAGTTGACCATTTGCTTATTAAGAAAATATGATCGTCCCAAAATAATTGTGTGCAGTAGGCAACTTCACACATGATAAGAAAGATGATAAACCAAATAGAGTGTTGATTTTACCAAATTGTTCATATTTATTTCTATAATTTGTAAATAATAATAATAATTTGAGAGTGATTCACATAACATTGATTAAAAGGTACAAAAGAAAAATAAACAATTAAAGTTACATTGAAAACTTAAAGTGATATTATTTTTGGAACAAATTATTTTCGCAAATGTGACACTTATTTTTGGGTAGAGGGAGTAAATTAGGAAGAAAATGATGATTTTACCCAATTAATAATAATTTTGCAGTGATGCCCATGATAATAATCAAAGAATATAATTGAAAAATAGCAATGAAAATTACATTAAAAAAAAACTAAAAGTTGCACTCTTTTTGAGACATTTTTTTTTTCAAATGCGACAATTATTATTAAATAAAAAGAGTAGTTGTATAGATCAATTCTACTCAATTTCAGCTACAATGGTTCCCCGACACCATCTATTATCATTGCAGCGAAAGATAAAACCAACGTGTCGTTGTGACAAGTGATAAGAGATTTGATCTCCTTATAAAAATGTGGTAATGAGTTTGATTTTTAATTTGTGTGTATTAAAAAAATCTGATTGAAAGAGAAAAAAAAAAATCAATTTATGTGCCTAATAAGTTGTCGAATTGACATTATGACTGTTATATTTATTATATATTGCTCAAAAATAATTTTTATATATATTAAAAAAATGAGATAAGATAAGAGGAATGCAAGCAAACTCCGGTGGCGTTAATTGGTTAACTCAGCACATGTTGATAACAATGATAAGTATGTTTATATTTTTTTTTTGAGTAATGATATTTTGACATCTATTTGATAACAACTTTGTTGACAACCTTGTTTTTCTCACTTCTTATTGGTCAAAAACAATGGAGAGAGAAAAAGGAAGAGAGAAGATAACAATATCATGTGAGTATGAGAGAGAAAGTTGTCCAAAAATTGTCAAAAAGTGATTGTCAAAATATCATTTCTCTTTTTTCTTTCCAATTCATTTCTTTTAATTGACTACTGGCGCTTTCCTTGACCGAGAAAATCTTGTGTGGTCCTGGTCCACACAAGTGGTATTTGGTCACACAAAAAGAAAAAAGAGAAGAGAGAAGAGAGAGAAAATGGAGAAGAGAGAAGAGAAGAGAGAGAAGGAAAAAAACTTGTGTGTGTGACCAAACCAAAATTCTTTGGTCCTGGTCCACACAAGTGTTTCTCTTCCTTGACCATATCCCCACACATCCTTATTCTTCTAATATTTTTTGAGGCACATATTCTTCTAACTTCTTTTTAGAAAAGAAAAAAAAAAGGTTTAACATGATTGATTTTTAATTTTGTAGTTCAATTTTTCCATTTGAGAAAAAGACAGGCTACCTGAAGATACTTTTCTCAAAAGGGGAAGGCACAAGTTAATGGTTCAAATATAGAAATAAATTATTGGAATGTGTGCATTTTATTTAGTCTTTAACTTTTAAATGCATTGAATGCACAAAATTTTAAAAAACATTTCTTCTTTTAGATTTCTTAACATGTGCCCTAAGGGCACAAGTTAACACTACCCTTCTCAAAATACTAAAGTAATTCAAATGAAATTTATTTATTTATGCATCATACACATAACACATTCACATTGCAATTCTTTTTGTGGATTTTAATTTTCCTATAACCAATAGTAAAACTAGTTTTGGAGGTAACCAAAAGCCATGTCCACACCAAACCAACCAACCAGAATGGTTTTTTCCAAGTAAAGTAATAACCCTTGAAAAATTAGAAAAGGTAGAAAAGATGAGGCATTCTCAGCCGCGTTCAAACCTCACATCGTTTCTTTGTCTGCTTTTTCATTTCTTCATATTCCAATATTAGGTCTGTCTCATCTTTTGGTCTGCCATGTGCATGTGATCCCTAAAATATGAATGAATAATGAATAAGACAAATCAAAAAGTATGCATTAGGAATAGCATTACATTATTTCTTTAATTCATTTTCTTATTGGGATAACCAATAGGAGTTTGTAAACGTGGTATTGCCCCCCAAAAGTCAGGGTCATGCACAAATTAGTAACTTACTAACAAGCAACGAGATTTTGAGAAACCAAAAACACAAACGCAAGATCTTCATTTCACTTTCTATTTGGCGCCATTAGGAAATAAAAAATTACTACTCAAATAACATAACATTATCCTTCTATATACACCACGTGAAGTTGTCTAATATTGTCAATTTTTTATCCAAGCATTGAATATGTTTCCTTATTTCATTGTCAAAGTCCATGTCACAAATATATGTCACATATTATGTGGGATTTAAATTAGATACACCTAAGATATACACAAAATCATCAACCATACAAAATTCTCCCCACCTGTCACCATTCATTTCTCCACCTTGGGGAGATTTTCCCATGTCCCGTCCCCATAAATGCCCACATATGTACGGTTAGATGACCCTGCAGGACAGGGGTATGATGCAGACATGTAGTATTTGCTTACGAAGCATGAATACAGACATGAACACTGACACGTCGATATTTATAATAATTTAATAAAATCATATAATTCAATGTAATTACGTGTCGGTCTCGGACACTGAAAGTTGGAGGAGGAGTATCTGTGTTTATAGGTCTTTGCAGGGAATAAGAATACAAATTGACATCATTTGATTTAAAAGTTGATTAGTAAAGTCGAAATATGAATCATTTGATTTTGATTTATTGATATAGATATCCAACTATATCAAATATCAATGTCACCTTCTCTAGTCTCTATCAAAATCTAATATTCACGTAATTACTTGTCCTTATTAATTTGCAGGACTTACCTGAGCATCAAAGAGGGGATGCAGTGAGTAGCATGGTGTATGAAGCTAATGCAAGAGTGAGAGACCCTGTGTATGGTTGTGTGGGGGCAATTTCGTCCCTTCAGCAACAGATTGATGTGCTACAAACCCAATTGGCTGTAGCACAAGCTGAGGCAGTGCACCTAAGGGTGCGCCAAACTGCATCATCATTTTGGAACAGTGCAGGGCATAGTCCAACTAGCCCAACCTATAGTGGCTCTCCATCATCAAAAATCAATGAATCACAACATGCCAAACATATTTTTGATATGGACATGGTGGTGGACCAAGCTGCCTATGGTGATTCAATGTGGTGA
Protein sequence

>MS.gene067582.t1

MKEGGGNKKQGAASPCAACKLLRRRCAQDCLFAPYFPADEPHKFANVHKVFGASNVNKMLQDLPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAVAQAEAVHLRVRQTASSFWNSAGHSPTSPTYSGSPSSKINESQHAKHIFDMDMVVDQAAYGDSMW