Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067644.t1 | XP_003605474.1 | 64.2 | 229 | 60 | 2 | 1 | 207 | 1 | 229 | 1.10E-66 | 263.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067644.t1 | Q9FJK3 | 59.5 | 121 | 49 | 0 | 1 | 121 | 1 | 121 | 5.3e-33 | 142.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067644.t1 | G7JM29 | 64.2 | 229 | 60 | 2 | 1 | 207 | 1 | 229 | 8.0e-67 | 263.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene067644.t1 | TF | MADS-M-type |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067644.t1 | MTR_4g031910 | 67.686 | 229 | 52 | 2 | 1 | 207 | 1 | 229 | 5.66e-98 | 284 |
| MS.gene067644.t1 | MTR_4g032290 | 64.344 | 244 | 37 | 3 | 1 | 207 | 1 | 231 | 5.85e-93 | 271 |
| MS.gene067644.t1 | MTR_4g032620 | 52.814 | 231 | 85 | 2 | 1 | 207 | 1 | 231 | 3.30e-81 | 241 |
| MS.gene067644.t1 | MTR_8g036130 | 52.632 | 247 | 77 | 5 | 1 | 207 | 1 | 247 | 7.47e-75 | 226 |
| MS.gene067644.t1 | MTR_4g032260 | 73.248 | 157 | 27 | 1 | 1 | 142 | 1 | 157 | 7.86e-69 | 207 |
| MS.gene067644.t1 | MTR_3g466980 | 57.480 | 127 | 54 | 0 | 1 | 127 | 1 | 127 | 1.93e-50 | 163 |
| MS.gene067644.t1 | MTR_2g035610 | 71.311 | 122 | 35 | 0 | 1 | 122 | 1 | 122 | 6.60e-50 | 158 |
| MS.gene067644.t1 | MTR_3g065100 | 42.917 | 240 | 99 | 4 | 1 | 204 | 1 | 238 | 1.11e-49 | 162 |
| MS.gene067644.t1 | MTR_3g466830 | 46.809 | 141 | 74 | 1 | 3 | 143 | 2 | 141 | 4.01e-41 | 137 |
| MS.gene067644.t1 | MTR_5g075380 | 47.794 | 136 | 71 | 0 | 1 | 136 | 1 | 136 | 2.93e-39 | 132 |
| MS.gene067644.t1 | MTR_3g466890 | 44.681 | 141 | 77 | 1 | 3 | 143 | 2 | 141 | 4.51e-38 | 129 |
| MS.gene067644.t1 | MTR_4g063790 | 39.759 | 166 | 99 | 1 | 1 | 165 | 1 | 166 | 1.12e-37 | 129 |
| MS.gene067644.t1 | MTR_3g467080 | 47.541 | 122 | 64 | 0 | 1 | 122 | 1 | 122 | 3.30e-37 | 127 |
| MS.gene067644.t1 | MTR_5g047580 | 46.970 | 132 | 68 | 2 | 1 | 132 | 1 | 130 | 8.83e-36 | 123 |
| MS.gene067644.t1 | MTR_1g077390 | 44.444 | 135 | 74 | 1 | 1 | 135 | 1 | 134 | 8.24e-34 | 118 |
| MS.gene067644.t1 | MTR_1g090710 | 41.549 | 142 | 78 | 2 | 1 | 138 | 1 | 141 | 7.87e-33 | 116 |
| MS.gene067644.t1 | MTR_2g016210 | 35.838 | 173 | 95 | 2 | 1 | 157 | 1 | 173 | 4.43e-32 | 116 |
| MS.gene067644.t1 | MTR_1g090783 | 40.909 | 132 | 76 | 2 | 3 | 134 | 2 | 131 | 7.57e-31 | 110 |
| MS.gene067644.t1 | MTR_4g032270 | 64.368 | 87 | 23 | 1 | 129 | 207 | 45 | 131 | 7.61e-31 | 110 |
| MS.gene067644.t1 | MTR_4g028800 | 74.286 | 70 | 16 | 1 | 1 | 70 | 1 | 68 | 9.99e-31 | 108 |
| MS.gene067644.t1 | MTR_1g090697 | 41.860 | 129 | 74 | 1 | 1 | 129 | 1 | 128 | 6.52e-30 | 108 |
| MS.gene067644.t1 | MTR_3g031100 | 43.860 | 114 | 64 | 0 | 1 | 114 | 1 | 114 | 9.42e-30 | 110 |
| MS.gene067644.t1 | MTR_3g465410 | 39.855 | 138 | 82 | 1 | 29 | 165 | 1 | 138 | 4.86e-29 | 105 |
| MS.gene067644.t1 | MTR_7g011950 | 43.704 | 135 | 75 | 1 | 1 | 135 | 1 | 134 | 5.24e-29 | 106 |
| MS.gene067644.t1 | MTR_7g055800 | 50.427 | 117 | 30 | 2 | 1 | 117 | 1 | 89 | 1.24e-28 | 103 |
| MS.gene067644.t1 | MTR_1g077320 | 43.704 | 135 | 75 | 1 | 1 | 135 | 1 | 134 | 1.71e-28 | 105 |
| MS.gene067644.t1 | MTR_3g031240 | 40.708 | 113 | 67 | 0 | 1 | 113 | 1 | 113 | 1.11e-27 | 103 |
| MS.gene067644.t1 | MTR_4g028720 | 42.222 | 135 | 77 | 1 | 1 | 135 | 1 | 134 | 1.18e-27 | 102 |
| MS.gene067644.t1 | MTR_7g055790 | 54.054 | 111 | 33 | 1 | 1 | 111 | 59 | 151 | 1.51e-27 | 102 |
| MS.gene067644.t1 | MTR_1g084950 | 49.573 | 117 | 58 | 1 | 1 | 117 | 1 | 116 | 1.92e-27 | 102 |
| MS.gene067644.t1 | MTR_1g077300 | 48.760 | 121 | 61 | 1 | 1 | 121 | 1 | 120 | 2.22e-27 | 102 |
| MS.gene067644.t1 | MTR_4g019670 | 38.849 | 139 | 84 | 1 | 3 | 141 | 6 | 143 | 2.74e-24 | 99.8 |
| MS.gene067644.t1 | MTR_3g466900 | 39.286 | 112 | 67 | 1 | 32 | 143 | 2 | 112 | 3.07e-24 | 93.2 |
| MS.gene067644.t1 | MTR_7g106510 | 38.129 | 139 | 85 | 1 | 3 | 141 | 6 | 143 | 3.91e-24 | 99.4 |
| MS.gene067644.t1 | MTR_3g466930 | 36.607 | 112 | 70 | 1 | 32 | 143 | 2 | 112 | 7.80e-24 | 92.0 |
| MS.gene067644.t1 | MTR_7g055940 | 49.057 | 106 | 26 | 2 | 1 | 106 | 1 | 78 | 2.98e-23 | 89.0 |
| MS.gene067644.t1 | MTR_2g035580 | 38.947 | 95 | 58 | 0 | 1 | 95 | 1 | 95 | 8.39e-21 | 85.1 |
| MS.gene067644.t1 | MTR_3g093900 | 34.646 | 127 | 83 | 0 | 3 | 129 | 6 | 132 | 3.10e-20 | 88.6 |
| MS.gene067644.t1 | MTR_5g047560 | 40.171 | 117 | 53 | 2 | 1 | 117 | 1 | 100 | 3.75e-20 | 82.8 |
| MS.gene067644.t1 | MTR_6g005450 | 34.211 | 114 | 66 | 4 | 1 | 107 | 1 | 112 | 9.00e-12 | 63.5 |
| MS.gene067644.t1 | MTR_1g114730 | 32.743 | 113 | 69 | 3 | 1 | 107 | 1 | 112 | 9.91e-12 | 63.2 |
| MS.gene067644.t1 | MTR_6g018920 | 34.513 | 113 | 67 | 4 | 1 | 107 | 1 | 112 | 1.30e-11 | 63.2 |
| MS.gene067644.t1 | MTR_4g084780 | 53.846 | 52 | 24 | 0 | 74 | 125 | 1 | 52 | 7.32e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067644.t1 | AT5G48670 | 59.504 | 121 | 49 | 0 | 1 | 121 | 1 | 121 | 2.36e-38 | 135 |
| MS.gene067644.t1 | AT1G65330 | 51.261 | 119 | 58 | 0 | 3 | 121 | 2 | 120 | 1.31e-36 | 129 |
| MS.gene067644.t1 | AT1G65300 | 48.739 | 119 | 61 | 0 | 3 | 121 | 2 | 120 | 7.80e-36 | 127 |
| MS.gene067644.t1 | AT5G26630 | 41.872 | 203 | 92 | 3 | 1 | 178 | 1 | 202 | 4.25e-35 | 124 |
| MS.gene067644.t1 | AT5G27960 | 48.361 | 122 | 62 | 1 | 5 | 126 | 3 | 123 | 5.76e-34 | 123 |
| MS.gene067644.t1 | AT5G26650 | 48.361 | 122 | 62 | 1 | 5 | 126 | 3 | 123 | 9.84e-34 | 124 |
| MS.gene067644.t1 | AT5G27810 | 54.839 | 93 | 42 | 0 | 29 | 121 | 1 | 93 | 4.90e-30 | 107 |
| MS.gene067644.t1 | AT1G31630 | 41.935 | 124 | 70 | 2 | 3 | 126 | 2 | 123 | 2.34e-29 | 111 |
| MS.gene067644.t1 | AT3G05860 | 40.496 | 121 | 72 | 0 | 1 | 121 | 1 | 121 | 3.48e-28 | 105 |
| MS.gene067644.t1 | AT1G31640 | 42.857 | 119 | 67 | 1 | 3 | 121 | 2 | 119 | 5.44e-28 | 109 |
| MS.gene067644.t1 | AT2G28700 | 40.714 | 140 | 80 | 2 | 1 | 137 | 1 | 140 | 1.06e-27 | 107 |
| MS.gene067644.t1 | AT3G05860 | 40.496 | 121 | 72 | 0 | 1 | 121 | 1 | 121 | 1.22e-27 | 105 |
| MS.gene067644.t1 | AT3G05860 | 40.496 | 121 | 72 | 0 | 1 | 121 | 1 | 121 | 1.27e-27 | 105 |
| MS.gene067644.t1 | AT5G26580 | 38.095 | 126 | 63 | 2 | 1 | 126 | 1 | 111 | 8.27e-23 | 94.4 |
| MS.gene067644.t1 | AT1G22590 | 35.345 | 116 | 75 | 0 | 1 | 116 | 1 | 116 | 2.44e-22 | 89.4 |
| MS.gene067644.t1 | AT2G40210 | 40.310 | 129 | 76 | 1 | 1 | 129 | 1 | 128 | 2.66e-20 | 87.8 |
| MS.gene067644.t1 | AT5G06500 | 37.209 | 129 | 80 | 1 | 1 | 129 | 1 | 128 | 3.49e-20 | 85.5 |
| MS.gene067644.t1 | AT5G58890 | 38.583 | 127 | 67 | 5 | 6 | 123 | 6 | 130 | 3.27e-15 | 72.8 |
| MS.gene067644.t1 | AT5G55690 | 42.308 | 78 | 38 | 2 | 1 | 71 | 1 | 78 | 1.65e-12 | 65.1 |
| MS.gene067644.t1 | AT5G55690 | 42.308 | 78 | 38 | 2 | 1 | 71 | 1 | 78 | 1.65e-12 | 65.1 |
Find 53 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCTTCAAGGTAGTAAATT+AGG | 0.161446 | 4.1:+69066402 | None:intergenic |
| AGAAACAAAGAAAAGAAAAT+AGG | 0.231520 | 4.1:-69068148 | MS.gene067644:CDS |
| CCCTTTGGTGAGATCAATTA+TGG | 0.234667 | 4.1:-69066432 | MS.gene067644:CDS |
| AAGAAAGGGTCTATTGAAAA+AGG | 0.312767 | 4.1:-69068381 | MS.gene067644:CDS |
| ATCTCTGGCTCAGGCTCATA+AGG | 0.338625 | 4.1:+69068305 | None:intergenic |
| GAGTGAAGAAATGACAATTA+TGG | 0.350941 | 4.1:-69066553 | MS.gene067644:CDS |
| GCCCTAATTTACTACCTTGA+AGG | 0.380748 | 4.1:-69066404 | None:intergenic |
| TCCTTCAAGGTAGTAAATTA+GGG | 0.396741 | 4.1:+69066403 | None:intergenic |
| GAAGGACATTGGTAGACGTT+TGG | 0.410243 | 4.1:-69066613 | MS.gene067644:intron |
| ATGAGCCTGAGCCAGAGATT+TGG | 0.412869 | 4.1:-69068301 | MS.gene067644:CDS |
| TCTGGTGAAGGCCAAATCTC+TGG | 0.413104 | 4.1:+69068290 | None:intergenic |
| GAAACAAAGAAAAGAAAATA+GGG | 0.419680 | 4.1:-69068147 | MS.gene067644:CDS |
| CTCATAAGGGCCATACACTA+TGG | 0.427313 | 4.1:+69068319 | None:intergenic |
| GATGCTGCTGGAGGTGGTGG+TGG | 0.431714 | 4.1:+69066579 | None:intergenic |
| CTAGATGCTGCTGGAGGTGG+TGG | 0.448669 | 4.1:+69066576 | None:intergenic |
| CTCCTAGATGCTGCTGGAGG+TGG | 0.449911 | 4.1:+69066573 | None:intergenic |
| CACAACCATGGCTAGAAGTA+AGG | 0.461347 | 4.1:-69068459 | None:intergenic |
| GAAGCCTATGCCATAGTGTA+TGG | 0.472163 | 4.1:-69068329 | MS.gene067644:CDS |
| ATCATACAAGAAAAGAAGAA+AGG | 0.473094 | 4.1:-69068396 | MS.gene067644:CDS |
| TCAATTATTGATAGACTCAA+TGG | 0.473888 | 4.1:-69066481 | MS.gene067644:CDS |
| TCTTCACTCCTAGATGCTGC+TGG | 0.474575 | 4.1:+69066567 | None:intergenic |
| CTTGACACAAAGGGTTCTGA+AGG | 0.478789 | 4.1:-69068186 | MS.gene067644:CDS |
| GAAGGCCAAATCTCTGGCTC+AGG | 0.493317 | 4.1:+69068296 | None:intergenic |
| GCGCAAGAGACAGTGCCCTT+TGG | 0.496623 | 4.1:-69066447 | MS.gene067644:CDS |
| TGCGGCATCATTGACAATGA+AGG | 0.507200 | 4.1:+69068427 | None:intergenic |
| AGAGACTTTCTTGACACAAA+GGG | 0.517022 | 4.1:-69068195 | MS.gene067644:CDS |
| GACCATAATTTGAAGGACAT+TGG | 0.517963 | 4.1:-69066624 | MS.gene067644:intron |
| GGACATTGGTAGACGTTTGG+CGG | 0.524285 | 4.1:-69066610 | MS.gene067644:CDS |
| CACCACCTCCAGCAGCATCT+AGG | 0.525577 | 4.1:-69066575 | MS.gene067644:CDS |
| TTTGTGTCAAGAAAGTCTCT+TGG | 0.525855 | 4.1:+69068198 | None:intergenic |
| TCATACAAGAAAAGAAGAAA+GGG | 0.526600 | 4.1:-69068395 | MS.gene067644:CDS |
| TTTAACCTTACTTCTAGCCA+TGG | 0.533701 | 4.1:+69068454 | None:intergenic |
| TCTCTGGCTCAGGCTCATAA+GGG | 0.538844 | 4.1:+69068306 | None:intergenic |
| ATGTCTCATTGTCTCAATGA+AGG | 0.542205 | 4.1:-69068104 | MS.gene067644:CDS |
| TTGATAGACTCAATGGTGGC+TGG | 0.550677 | 4.1:-69066474 | MS.gene067644:CDS |
| CCATAATTGATCTCACCAAA+GGG | 0.558369 | 4.1:+69066432 | None:intergenic |
| CATTAATAGATATGCCAACA+TGG | 0.579766 | 4.1:+69066523 | None:intergenic |
| GAGATTTGGCCTTCACCAGA+GGG | 0.580805 | 4.1:-69068287 | MS.gene067644:CDS |
| TCCATAATTGATCTCACCAA+AGG | 0.580970 | 4.1:+69066431 | None:intergenic |
| ATTATGGATCATAGCCATGT+TGG | 0.600297 | 4.1:-69066537 | MS.gene067644:CDS |
| GATTTGGCCTTCACCAGAGG+GGG | 0.601928 | 4.1:-69068285 | MS.gene067644:CDS |
| CTTGTATGATTCTTTCCTTG+CGG | 0.605657 | 4.1:+69068409 | None:intergenic |
| AAGAGACTTTCTTGACACAA+AGG | 0.607804 | 4.1:-69068196 | MS.gene067644:CDS |
| AGGGCCATACACTATGGCAT+AGG | 0.609947 | 4.1:+69068325 | None:intergenic |
| AGAGATTTGGCCTTCACCAG+AGG | 0.617598 | 4.1:-69068288 | MS.gene067644:CDS |
| ATAGGCTTCAATGCCACAGA+GGG | 0.634246 | 4.1:+69068343 | None:intergenic |
| TCACTCCTAGATGCTGCTGG+AGG | 0.645942 | 4.1:+69066570 | None:intergenic |
| TCATTGTCAATGATGCCGCA+AGG | 0.664783 | 4.1:-69068424 | MS.gene067644:CDS |
| ATTATTGATAGACTCAATGG+TGG | 0.675374 | 4.1:-69066478 | MS.gene067644:CDS |
| GCTGAACTTAGCACCCTCTG+TGG | 0.677042 | 4.1:-69068356 | MS.gene067644:CDS |
| TGTGCACGACAATATGTCAA+CGG | 0.691955 | 4.1:-69068075 | MS.gene067644:intron |
| AGATTTGGCCTTCACCAGAG+GGG | 0.703414 | 4.1:-69068286 | MS.gene067644:CDS |
| CATAGGCTTCAATGCCACAG+AGG | 0.713859 | 4.1:+69068342 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAATATATAATAAAACCTAA+TGG | - | chr4.1:69068149-69068168 | MS.gene067644:CDS | 15.0% |
| !! | GAATATATAATAAAACCTAA+TGG | + | chr4.1:69068168-69068149 | None:intergenic | 15.0% |
| !! | TTAACAATACAAATACAAAA+TGG | - | chr4.1:69066839-69066858 | MS.gene067644:intron | 15.0% |
| !!! | ATATTTGTTTTGGTTTAATT+TGG | + | chr4.1:69067636-69067655 | None:intergenic | 15.0% |
| !!! | ATGTTAGATAATAAAGTATT+GGG | - | chr4.1:69066865-69066884 | MS.gene067644:intron | 15.0% |
| !!! | TATTTGTTTTGGTTTAATTT+GGG | + | chr4.1:69067635-69067654 | None:intergenic | 15.0% |
| !! | AGAAACAAAGAAAAGAAAAT+AGG | - | chr4.1:69066711-69066730 | MS.gene067644:intron | 20.0% |
| !! | GAAACAAAGAAAAGAAAATA+GGG | - | chr4.1:69066712-69066731 | MS.gene067644:intron | 20.0% |
| !! | GATGTTAGATAATAAAGTAT+TGG | - | chr4.1:69066864-69066883 | MS.gene067644:intron | 20.0% |
| !! | TCTGTTAGATAATAAAGTAT+TGG | + | chr4.1:69068213-69068232 | None:intergenic | 20.0% |
| !! | TTGTATTTGTATTGTTAACA+TGG | + | chr4.1:69066837-69066856 | None:intergenic | 20.0% |
| !!! | AATTTTTCCTGGTTTAATTT+TGG | + | chr4.1:69067610-69067629 | None:intergenic | 20.0% |
| !!! | CTGTTAGATAATAAAGTATT+GGG | + | chr4.1:69068212-69068231 | None:intergenic | 20.0% |
| !!! | TAGTTTGGTTATATTTGTTT+TGG | + | chr4.1:69067646-69067665 | None:intergenic | 20.0% |
| !!! | TTTTTAAAGTTTGTGAGTTT+TGG | + | chr4.1:69067426-69067445 | None:intergenic | 20.0% |
| ! | ACCAAATTGAAGAATCAAAA+AGG | - | chr4.1:69067123-69067142 | MS.gene067644:intron | 25.0% |
| ! | AGACTAAACCAAAAACATTA+AGG | - | chr4.1:69067328-69067347 | MS.gene067644:intron | 25.0% |
| ! | ATAAGAACCAAAATTAAACC+AGG | - | chr4.1:69067600-69067619 | MS.gene067644:intron | 25.0% |
| ! | ATCATACAAGAAAAGAAGAA+AGG | - | chr4.1:69066463-69066482 | MS.gene067644:CDS | 25.0% |
| ! | CAAATTGAAGAATCAAAAAG+GGG | - | chr4.1:69067125-69067144 | MS.gene067644:intron | 25.0% |
| ! | CCAAATTGAAGAATCAAAAA+GGG | - | chr4.1:69067124-69067143 | MS.gene067644:intron | 25.0% |
| ! | TATAATTAGCCAAGTAAACT+AGG | - | chr4.1:69067822-69067841 | MS.gene067644:intron | 25.0% |
| ! | TCAATTATTGATAGACTCAA+TGG | - | chr4.1:69068378-69068397 | MS.gene067644:CDS | 25.0% |
| ! | TCATACAAGAAAAGAAGAAA+GGG | - | chr4.1:69066464-69066483 | MS.gene067644:CDS | 25.0% |
| !! | AGTTCTAACATTTGATTGTT+GGG | + | chr4.1:69067009-69067028 | None:intergenic | 25.0% |
| !! | TAGATTTGAGTTATCTTACT+TGG | - | chr4.1:69066807-69066826 | MS.gene067644:intron | 25.0% |
| !!! | TAATTTGGGTTAATTTTTCC+TGG | + | chr4.1:69067621-69067640 | None:intergenic | 25.0% |
| !!! | TCTTTCTTTTTGGATTAGTT+TGG | + | chr4.1:69067661-69067680 | None:intergenic | 25.0% |
| !!! | TTAATGTTTTTGGTTTAGTC+TGG | + | chr4.1:69067329-69067348 | None:intergenic | 25.0% |
| AAGAAAGGGTCTATTGAAAA+AGG | - | chr4.1:69066478-69066497 | MS.gene067644:CDS | 30.0% | |
| ACAGATTGACCATAATTTGA+AGG | - | chr4.1:69068228-69068247 | MS.gene067644:CDS | 30.0% | |
| ACCAAACAACCAAATTGAAA+GGG | - | chr4.1:69067035-69067054 | MS.gene067644:intron | 30.0% | |
| ATACGCAAATTGAAGAAAGT+AGG | - | chr4.1:69067743-69067762 | MS.gene067644:intron | 30.0% | |
| ATTATTGATAGACTCAATGG+TGG | - | chr4.1:69068381-69068400 | MS.gene067644:CDS | 30.0% | |
| CATTAATAGATATGCCAACA+TGG | + | chr4.1:69068339-69068358 | None:intergenic | 30.0% | |
| GAGTGAAGAAATGACAATTA+TGG | - | chr4.1:69068306-69068325 | MS.gene067644:CDS | 30.0% | |
| GATTCTTCAATTTGGTTGTT+TGG | + | chr4.1:69067119-69067138 | None:intergenic | 30.0% | |
| GTTCTAACATTTGATTGTTG+GGG | + | chr4.1:69067008-69067027 | None:intergenic | 30.0% | |
| TACCAATGTCCTTCAAATTA+TGG | + | chr4.1:69068240-69068259 | None:intergenic | 30.0% | |
| TTAGTAAGTTAGAGTCCATT+AGG | - | chr4.1:69066910-69066929 | MS.gene067644:intron | 30.0% | |
| TTAGTAAGTTAGAGTCCATT+AGG | + | chr4.1:69066929-69066910 | None:intergenic | 30.0% | |
| ! | AGTATTGGGCTTAAGTTATT+GGG | - | chr4.1:69066879-69066898 | MS.gene067644:intron | 30.0% |
| ! | AGTATTGGGCTTAAGTTATT+GGG | + | chr4.1:69066898-69066879 | None:intergenic | 30.0% |
| ! | GAGTTCTAACATTTGATTGT+TGG | + | chr4.1:69067010-69067029 | None:intergenic | 30.0% |
| ! | GTTCAACTTGTTTAGTTGTT+GGG | + | chr4.1:69067260-69067279 | None:intergenic | 30.0% |
| ! | TTATTGATTGTCAAGTGTTG+AGG | + | chr4.1:69067510-69067529 | None:intergenic | 30.0% |
| !! | AAGTATTGGGCTTAAGTTAT+TGG | - | chr4.1:69066878-69066897 | MS.gene067644:intron | 30.0% |
| !! | AAGTATTGGGCTTAAGTTAT+TGG | + | chr4.1:69066897-69066878 | None:intergenic | 30.0% |
| !! | CCCTTTTTGATTCTTCAATT+TGG | + | chr4.1:69067127-69067146 | None:intergenic | 30.0% |
| !! | TAGTCTGGATTGATTTGTAT+TGG | + | chr4.1:69067314-69067333 | None:intergenic | 30.0% |
| !! | TTGTCAACGTTTGATTTGAT+TGG | + | chr4.1:69067797-69067816 | None:intergenic | 30.0% |
| !! | TTTTCGTTCATTTTCTGAAG+TGG | + | chr4.1:69067878-69067897 | None:intergenic | 30.0% |
| !!! | TGAGTTTTGGAGTTATTTGT+GGG | + | chr4.1:69067413-69067432 | None:intergenic | 30.0% |
| AAGAGACTTTCTTGACACAA+AGG | - | chr4.1:69066663-69066682 | MS.gene067644:intron | 35.0% | |
| ACCAAAAACATTAAGGAGAC+CGG | - | chr4.1:69067335-69067354 | MS.gene067644:intron | 35.0% | |
| AGACAAACAAAACTGACAAG+AGG | - | chr4.1:69067698-69067717 | MS.gene067644:intron | 35.0% | |
| AGAGACTTTCTTGACACAAA+GGG | - | chr4.1:69066664-69066683 | MS.gene067644:intron | 35.0% | |
| AGATAACAATAACGACGACT+AGG | - | chr4.1:69068081-69068100 | MS.gene067644:CDS | 35.0% | |
| ATGTCTCATTGTCTCAATGA+AGG | - | chr4.1:69066755-69066774 | MS.gene067644:intron | 35.0% | |
| ATTATGGATCATAGCCATGT+TGG | - | chr4.1:69068322-69068341 | MS.gene067644:CDS | 35.0% | |
| CACCAAACAACCAAATTGAA+AGG | - | chr4.1:69067034-69067053 | MS.gene067644:intron | 35.0% | |
| CCAAACAACCAAATTGAAAG+GGG | - | chr4.1:69067036-69067055 | MS.gene067644:intron | 35.0% | |
| CCATAATTGATCTCACCAAA+GGG | + | chr4.1:69068430-69068449 | None:intergenic | 35.0% | |
| CTTGTATGATTCTTTCCTTG+CGG | + | chr4.1:69066453-69066472 | None:intergenic | 35.0% | |
| GACCATAATTTGAAGGACAT+TGG | - | chr4.1:69068235-69068254 | MS.gene067644:CDS | 35.0% | |
| GATAACAATAACGACGACTA+GGG | - | chr4.1:69068082-69068101 | MS.gene067644:CDS | 35.0% | |
| GTCAAAATAGTGCTCACAAT+TGG | + | chr4.1:69067234-69067253 | None:intergenic | 35.0% | |
| TCCATAATTGATCTCACCAA+AGG | + | chr4.1:69068431-69068450 | None:intergenic | 35.0% | |
| TGTTGAGTTCCCAAAAGTTT+GGG | + | chr4.1:69067976-69067995 | None:intergenic | 35.0% | |
| TTTCCTCTTCCTAGTTTACT+TGG | + | chr4.1:69067834-69067853 | None:intergenic | 35.0% | |
| TTTCTTCTCCCCTTTCAATT+TGG | + | chr4.1:69067047-69067066 | None:intergenic | 35.0% | |
| TTTGTGTCAAGAAAGTCTCT+TGG | + | chr4.1:69066664-69066683 | None:intergenic | 35.0% | |
| ! | AAACACATCCCCAAACTTTT+GGG | - | chr4.1:69067964-69067983 | MS.gene067644:intron | 35.0% |
| ! | ATGTGTCGTCTCTTTCTTTT+TGG | + | chr4.1:69067671-69067690 | None:intergenic | 35.0% |
| ! | ATTCGTTCGTCAACTTGTTT+CGG | + | chr4.1:69067582-69067601 | None:intergenic | 35.0% |
| ! | GAGTTATTTGTGGGTTGTTT+GGG | + | chr4.1:69067404-69067423 | None:intergenic | 35.0% |
| ! | GGTTCAACTTGTTTAGTTGT+TGG | + | chr4.1:69067261-69067280 | None:intergenic | 35.0% |
| ! | TAATGGCTTTTGTAGTGTCT+GGG | + | chr4.1:69067371-69067390 | None:intergenic | 35.0% |
| ! | TTAATGGCTTTTGTAGTGTC+TGG | + | chr4.1:69067372-69067391 | None:intergenic | 35.0% |
| !! | CTTTTTGATGGTTCGATTGT+GGG | + | chr4.1:69067943-69067962 | None:intergenic | 35.0% |
| !! | GTCTTTCGTTCAATTTTGAC+AGG | + | chr4.1:69067911-69067930 | None:intergenic | 35.0% |
| !! | GTTTGGGTCTTGTGTTTTAA+TGG | + | chr4.1:69067388-69067407 | None:intergenic | 35.0% |
| !! | TTGTCTTCGCATGATTTGTT+TGG | + | chr4.1:69067282-69067301 | None:intergenic | 35.0% |
| !!! | GTGAGTTTTGGAGTTATTTG+TGG | + | chr4.1:69067414-69067433 | None:intergenic | 35.0% |
| !!! | TTCATTTTCTGAAGTGGCTT+TGG | + | chr4.1:69067872-69067891 | None:intergenic | 35.0% |
| CCCCTTTCAATTTGGTTGTT+TGG | + | chr4.1:69067039-69067058 | None:intergenic | 40.0% | |
| CCCTTTGGTGAGATCAATTA+TGG | - | chr4.1:69068427-69068446 | MS.gene067644:CDS | 40.0% | |
| CTGTTGAGTTCCCAAAAGTT+TGG | + | chr4.1:69067977-69067996 | None:intergenic | 40.0% | |
| GAATAACGGCGAATCATTCA+AGG | - | chr4.1:69067999-69068018 | MS.gene067644:intron | 40.0% | |
| GTTGAGTTCCCAAAAGTTTG+GGG | + | chr4.1:69067975-69067994 | None:intergenic | 40.0% | |
| TAGCCAAGTAAACTAGGAAG+AGG | - | chr4.1:69067828-69067847 | MS.gene067644:intron | 40.0% | |
| TCGGTCAGTTATGTGTTGTA+GGG | + | chr4.1:69067563-69067582 | None:intergenic | 40.0% | |
| TGTGCACGACAATATGTCAA+CGG | - | chr4.1:69066784-69066803 | MS.gene067644:intron | 40.0% | |
| TTCGGTCAGTTATGTGTTGT+AGG | + | chr4.1:69067564-69067583 | None:intergenic | 40.0% | |
| ! | CAAACACATCCCCAAACTTT+TGG | - | chr4.1:69067963-69067982 | MS.gene067644:intron | 40.0% |
| ! | GGAGTTATTTGTGGGTTGTT+TGG | + | chr4.1:69067405-69067424 | None:intergenic | 40.0% |
| ! | GGTTTGTTCGTTCGTTTGTT+TGG | + | chr4.1:69067213-69067232 | None:intergenic | 40.0% |
| ! | TTAACATGGTATCGAGAGCA+TGG | + | chr4.1:69068034-69068053 | None:intergenic | 40.0% |
| ! | TTGTAAGTCGTCAGAGTGTT+TGG | + | chr4.1:69067461-69067480 | None:intergenic | 40.0% |
| !! | AACTTTTGGGAACTCAACAG+CGG | - | chr4.1:69067977-69067996 | MS.gene067644:intron | 40.0% |
| !! | AAGTGGCTTTGGTTTGTCTT+CGG | + | chr4.1:69067861-69067880 | None:intergenic | 40.0% |
| !! | CGTCATGAATTTTGAGAGCA+CGG | + | chr4.1:69066606-69066625 | None:intergenic | 40.0% |
| !! | GCTTTTTGATGGTTCGATTG+TGG | + | chr4.1:69067944-69067963 | None:intergenic | 40.0% |
| !! | TGAATTTTGAGAGCACGGAT+TGG | + | chr4.1:69066601-69066620 | None:intergenic | 40.0% |
| !! | TGATTGTCAAGTGTTGAGGT+GGG | + | chr4.1:69067506-69067525 | None:intergenic | 40.0% |
| !! | TTGATTGTCAAGTGTTGAGG+TGG | + | chr4.1:69067507-69067526 | None:intergenic | 40.0% |
| !!! | GGGATGTGTTTGCTTTTTGA+TGG | + | chr4.1:69067955-69067974 | None:intergenic | 40.0% |
| ATAGGCTTCAATGCCACAGA+GGG | + | chr4.1:69066519-69066538 | None:intergenic | 45.0% | |
| CGGTCAGTTATGTGTTGTAG+GGG | + | chr4.1:69067562-69067581 | None:intergenic | 45.0% | |
| CTCATAAGGGCCATACACTA+TGG | + | chr4.1:69066543-69066562 | None:intergenic | 45.0% | |
| GAAGCCTATGCCATAGTGTA+TGG | - | chr4.1:69066530-69066549 | MS.gene067644:CDS | 45.0% | |
| GAAGGACATTGGTAGACGTT+TGG | - | chr4.1:69068246-69068265 | MS.gene067644:CDS | 45.0% | |
| GGAACTCAACAGCGGAATAA+CGG | - | chr4.1:69067985-69068004 | MS.gene067644:intron | 45.0% | |
| GTGCTCACACTTTGGTTGTT+TGG | + | chr4.1:69067182-69067201 | None:intergenic | 45.0% | |
| TAACGGCGAATCATTCAAGG+TGG | - | chr4.1:69068002-69068021 | MS.gene067644:intron | 45.0% | |
| TCATTGTCAATGATGCCGCA+AGG | - | chr4.1:69066435-69066454 | MS.gene067644:CDS | 45.0% | |
| TGAGTCGAGTGCTCACAATT+TGG | + | chr4.1:69067159-69067178 | None:intergenic | 45.0% | |
| TGCGGCATCATTGACAATGA+AGG | + | chr4.1:69066435-69066454 | None:intergenic | 45.0% | |
| TTGATAGACTCAATGGTGGC+TGG | - | chr4.1:69068385-69068404 | MS.gene067644:CDS | 45.0% | |
| ! | CTTGACACAAAGGGTTCTGA+AGG | - | chr4.1:69066673-69066692 | MS.gene067644:intron | 45.0% |
| ! | GCCGGTCTCCTTAATGTTTT+TGG | + | chr4.1:69067339-69067358 | None:intergenic | 45.0% |
| AGGGCCATACACTATGGCAT+AGG | + | chr4.1:69066537-69066556 | None:intergenic | 50.0% | |
| ATGAGCCTGAGCCAGAGATT+TGG | - | chr4.1:69066558-69066577 | MS.gene067644:CDS | 50.0% | |
| CATAGGCTTCAATGCCACAG+AGG | + | chr4.1:69066520-69066539 | None:intergenic | 50.0% | |
| GGACATTGGTAGACGTTTGG+CGG | - | chr4.1:69068249-69068268 | MS.gene067644:CDS | 50.0% | |
| TCTGGTGAAGGCCAAATCTC+TGG | + | chr4.1:69066572-69066591 | None:intergenic | 50.0% | |
| TCTTCACTCCTAGATGCTGC+TGG | + | chr4.1:69068295-69068314 | None:intergenic | 50.0% | |
| TGAGTCGAGTGCTCACACTT+TGG | + | chr4.1:69067190-69067209 | None:intergenic | 50.0% | |
| ! | AGAGATTTGGCCTTCACCAG+AGG | - | chr4.1:69066571-69066590 | MS.gene067644:CDS | 50.0% |
| ! | AGATTTGGCCTTCACCAGAG+GGG | - | chr4.1:69066573-69066592 | MS.gene067644:CDS | 50.0% |
| ! | ATCTCTGGCTCAGGCTCATA+AGG | + | chr4.1:69066557-69066576 | None:intergenic | 50.0% |
| ! | GAGATTTGGCCTTCACCAGA+GGG | - | chr4.1:69066572-69066591 | MS.gene067644:CDS | 50.0% |
| ! | TCTCTGGCTCAGGCTCATAA+GGG | + | chr4.1:69066556-69066575 | None:intergenic | 50.0% |
| !! | AGGGGCTTCAGTTTGTTGCT+GGG | + | chr4.1:69067544-69067563 | None:intergenic | 50.0% |
| !! | TAGGGGCTTCAGTTTGTTGC+TGG | + | chr4.1:69067545-69067564 | None:intergenic | 50.0% |
| GCTGAACTTAGCACCCTCTG+TGG | - | chr4.1:69066503-69066522 | MS.gene067644:CDS | 55.0% | |
| GTGTCTGGGTTCAGCTTTGC+CGG | + | chr4.1:69067357-69067376 | None:intergenic | 55.0% | |
| TCACTCCTAGATGCTGCTGG+AGG | + | chr4.1:69068292-69068311 | None:intergenic | 55.0% | |
| TGGGGCGAGTGCTCACAATT+TGG | + | chr4.1:69066990-69067009 | None:intergenic | 55.0% | |
| ! | GAAGGCCAAATCTCTGGCTC+AGG | + | chr4.1:69066566-69066585 | None:intergenic | 55.0% |
| ! | GATTTGGCCTTCACCAGAGG+GGG | - | chr4.1:69066574-69066593 | MS.gene067644:CDS | 55.0% |
| CACCACCTCCAGCAGCATCT+AGG | - | chr4.1:69068284-69068303 | MS.gene067644:CDS | 60.0% | |
| CTAGATGCTGCTGGAGGTGG+TGG | + | chr4.1:69068286-69068305 | None:intergenic | 60.0% | |
| CTCCTAGATGCTGCTGGAGG+TGG | + | chr4.1:69068289-69068308 | None:intergenic | 60.0% | |
| GATTGGACCCCCTCTGGTGA+AGG | + | chr4.1:69066584-69066603 | None:intergenic | 60.0% | |
| GCGCAAGAGACAGTGCCCTT+TGG | - | chr4.1:69068412-69068431 | MS.gene067644:CDS | 60.0% | |
| ! | GATGCTGCTGGAGGTGGTGG+TGG | + | chr4.1:69068283-69068302 | None:intergenic | 65.0% |
| !! | AGCACGGATTGGACCCCCTC+TGG | + | chr4.1:69066590-69066609 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 69066407 | 69068474 | 69066407 | ID=MS.gene067644 |
| chr4.1 | mRNA | 69066407 | 69068474 | 69066407 | ID=MS.gene067644.t1;Parent=MS.gene067644 |
| chr4.1 | exon | 69068076 | 69068474 | 69068076 | ID=MS.gene067644.t1.exon1;Parent=MS.gene067644.t1 |
| chr4.1 | CDS | 69068076 | 69068474 | 69068076 | ID=cds.MS.gene067644.t1;Parent=MS.gene067644.t1 |
| chr4.1 | exon | 69066407 | 69066631 | 69066407 | ID=MS.gene067644.t1.exon2;Parent=MS.gene067644.t1 |
| chr4.1 | CDS | 69066407 | 69066631 | 69066407 | ID=cds.MS.gene067644.t1;Parent=MS.gene067644.t1 |
| Gene Sequence |
| Protein sequence |
