AlfalfaGEDB | MS.gene067644

M. sativa cultivar XinJiangDaYe / MS.gene067644

KEGG: -
GO: GO:0000976 GO:0000981 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0035326 GO:0043565 GO:0044212 GO:0045893 GO:0045935 GO:0045944 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067644.t1	XP_003605474.1	64.2	229	60	2	1	207	1	229	1.10E-66	263.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067644.t1	Q9FJK3	59.5	121	49	0	1	121	1	121	5.3e-33	142.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067644.t1	G7JM29	64.2	229	60	2	1	207	1	229	8.0e-67	263.1

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene067644.t1	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067644.t1	MTR_4g031910	67.686	229	52	2	1	207	1	229	5.66e-98	284
MS.gene067644.t1	MTR_4g032290	64.344	244	37	3	1	207	1	231	5.85e-93	271
MS.gene067644.t1	MTR_4g032620	52.814	231	85	2	1	207	1	231	3.30e-81	241
MS.gene067644.t1	MTR_8g036130	52.632	247	77	5	1	207	1	247	7.47e-75	226
MS.gene067644.t1	MTR_4g032260	73.248	157	27	1	1	142	1	157	7.86e-69	207
MS.gene067644.t1	MTR_3g466980	57.480	127	54	0	1	127	1	127	1.93e-50	163
MS.gene067644.t1	MTR_2g035610	71.311	122	35	0	1	122	1	122	6.60e-50	158
MS.gene067644.t1	MTR_3g065100	42.917	240	99	4	1	204	1	238	1.11e-49	162
MS.gene067644.t1	MTR_3g466830	46.809	141	74	1	3	143	2	141	4.01e-41	137
MS.gene067644.t1	MTR_5g075380	47.794	136	71	0	1	136	1	136	2.93e-39	132

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067644.t1	AT5G48670	59.504	121	49	0	1	121	1	121	2.36e-38	135
MS.gene067644.t1	AT1G65330	51.261	119	58	0	3	121	2	120	1.31e-36	129
MS.gene067644.t1	AT1G65300	48.739	119	61	0	3	121	2	120	7.80e-36	127
MS.gene067644.t1	AT5G26630	41.872	203	92	3	1	178	1	202	4.25e-35	124
MS.gene067644.t1	AT5G27960	48.361	122	62	1	5	126	3	123	5.76e-34	123
MS.gene067644.t1	AT5G26650	48.361	122	62	1	5	126	3	123	9.84e-34	124
MS.gene067644.t1	AT5G27810	54.839	93	42	0	29	121	1	93	4.90e-30	107
MS.gene067644.t1	AT1G31630	41.935	124	70	2	3	126	2	123	2.34e-29	111
MS.gene067644.t1	AT3G05860	40.496	121	72	0	1	121	1	121	3.48e-28	105
MS.gene067644.t1	AT1G31640	42.857	119	67	1	3	121	2	119	5.44e-28	109

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Find 53 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAAAGGGTCTATTGAAAA+AGG	0.312767	4.1:-69068381	MS.gene067644:CDS
AAGAGACTTTCTTGACACAA+AGG	0.607804	4.1:-69068196	MS.gene067644:CDS
AGAAACAAAGAAAAGAAAAT+AGG	0.231520	4.1:-69068148	MS.gene067644:CDS
AGAGACTTTCTTGACACAAA+GGG	0.517022	4.1:-69068195	MS.gene067644:CDS
AGAGATTTGGCCTTCACCAG+AGG	0.617598	4.1:-69068288	MS.gene067644:CDS
AGATTTGGCCTTCACCAGAG+GGG	0.703414	4.1:-69068286	MS.gene067644:CDS
AGGGCCATACACTATGGCAT+AGG	0.609947	4.1:+69068325	None:intergenic
ATAGGCTTCAATGCCACAGA+GGG	0.634246	4.1:+69068343	None:intergenic
ATCATACAAGAAAAGAAGAA+AGG	0.473094	4.1:-69068396	MS.gene067644:CDS
ATCCTTCAAGGTAGTAAATT+AGG	0.161446	4.1:+69066402	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAAAGGGTCTATTGAAAA+AGG	-	chr4.1:69066478-69066497	MS.gene067644:CDS	30.0%
ACAGATTGACCATAATTTGA+AGG	-	chr4.1:69068228-69068247	MS.gene067644:CDS	30.0%
ACCAAACAACCAAATTGAAA+GGG	-	chr4.1:69067035-69067054	MS.gene067644:intron	30.0%
ATACGCAAATTGAAGAAAGT+AGG	-	chr4.1:69067743-69067762	MS.gene067644:intron	30.0%
ATTATTGATAGACTCAATGG+TGG	-	chr4.1:69068381-69068400	MS.gene067644:CDS	30.0%
CATTAATAGATATGCCAACA+TGG	+	chr4.1:69068339-69068358	None:intergenic	30.0%
GAGTGAAGAAATGACAATTA+TGG	-	chr4.1:69068306-69068325	MS.gene067644:CDS	30.0%
GATTCTTCAATTTGGTTGTT+TGG	+	chr4.1:69067119-69067138	None:intergenic	30.0%
GTTCTAACATTTGATTGTTG+GGG	+	chr4.1:69067008-69067027	None:intergenic	30.0%
TACCAATGTCCTTCAAATTA+TGG	+	chr4.1:69068240-69068259	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	69066407	69068474	69066407	ID=MS.gene067644
chr4.1	mRNA	69066407	69068474	69066407	ID=MS.gene067644.t1;Parent=MS.gene067644
chr4.1	exon	69068076	69068474	69068076	ID=MS.gene067644.t1.exon1;Parent=MS.gene067644.t1
chr4.1	CDS	69068076	69068474	69068076	ID=cds.MS.gene067644.t1;Parent=MS.gene067644.t1
chr4.1	exon	69066407	69066631	69066407	ID=MS.gene067644.t1.exon2;Parent=MS.gene067644.t1
chr4.1	CDS	69066407	69066631	69066407	ID=cds.MS.gene067644.t1;Parent=MS.gene067644.t1

Gene Sequence

>MS.gene067644

ATGGCTAGAAGTAAGGTTAAACTTGCCTTCATTGTCAATGATGCCGCAAGGAAAGAATCATACAAGAAAAGAAGAAAGGGTCTATTGAAAAAGGTTGCTGAACTTAGCACCCTCTGTGGCATTGAAGCCTATGCCATAGTGTATGGCCCTTATGAGCCTGAGCCAGAGATTTGGCCTTCACCAGAGGGGGTCCAATCCGTGCTCTCAAAATTCATGACGATGCACGAGTTTCAAAAGTGCAAGAAAATGATGAACCAAGAGACTTTCTTGACACAAAGGGTTCTGAAGGCTGAAGAGAAATTGAAGAAACAAAGAAAAGAAAATAGGGAGCAAGAGATGACAATACTCATGTCTCATTGTCTCAATGAAGGTAGAGTTGTGCACGACAATATGTCAACGGTAGATTTGAGTTATCTTACTTGGTTGATTGTGTTAACAATACAAATACAAAATGGTAGATGTTAGATAATAAAGTATTGGGCTTAAGTTATTGGGCATTTATATTAGTAAGTTAGAGTCCATTAGGTTTTATTATATATTCTCTTATAACATTTTGTAATATTAAGCATTGATATTCTAACCAAATTGTGAGCACTCGCCCCAACAATCAAATGTTAGAACTCGACTCACCAAACAACCAAATTGAAAGGGGAGAAGAAACCAAATTGTGAGCACTCGCCCCAACAATCAAATGTTAGAACTCGACTCACCAAACAACCAAATTGAAGAATCAAAAAGGGGAGAAGAAACCAAATTGTGAGCACTCGACTCACCAAACAACCAAAGTGTGAGCACTCGACTCACCAAACAAACGAACGAACAAACCAATTGTGAGCACTATTTTGACTCACCCAACAACTAAACAAGTTGAACCAAACAAATCATGCGAAGACAAACTGACAAACCAATACAAATCAATCCAGACTAAACCAAAAACATTAAGGAGACCGGCAAAGCTGAACCCAGACACTACAAAAGCCATTAAAACACAAGACCCAAACAACCCACAAATAACTCCAAAACTCACAAACTTTAAAAATTGACTAACAAACCAAACACTCTGACGACTTACAACGCACAAAACACAAAAACATTACCCACCTCAACACTTGACAATCAATAAGAGACAAACAACCCAGCAACAAACTGAAGCCCCTACAACACATAACTGACCGAAACAAGTTGACGAACGAATAAGAACCAAAATTAAACCAGGAAAAATTAACCCAAATTAAACCAAAACAAATATAACCAAACTAATCCAAAAAGAAAGAGACGACACATAACAACGAGACAAACAAAACTGACAAGAGGCAAGTTCACAAACTTTTGTCTTATACGCAAATTGAAGAAAGTAGGTTAAATGAAACAAACTTCAAATAACTAACCAATCAAATCAAACGTTGACAAACTTATATAATTAGCCAAGTAAACTAGGAAGAGGAAACAAACCGAAGACAAACCAAAGCCACTTCAGAAAATGAACGAAAAGCAACTTAAACCTGTCAAAATTGAACGAAAGACAAACTGTTTCCCACAATCGAACCATCAAAAAGCAAACACATCCCCAAACTTTTGGGAACTCAACAGCGGAATAACGGCGAATCATTCAAGGTGGATCAAACCATGCTCTCGATACCATGTTAACAATACAAATACAAAATGGAGAAAGAGAGATAACAATAACGACGACTAGGGTTTCATTAGAATATCAATGCTTAATATTACAAAATGTTATAAGAGAATATATAATAAAACCTAATGGACTCTAACTTACTAATATAAATGCCCAATAACTTAAGCCCAATACTTTATTATCTAACAGATTGACCATAATTTGAAGGACATTGGTAGACGTTTGGCGGCAACAGTGCCACCACCACCTCCAGCAGCATCTAGGAGTGAAGAAATGACAATTATGGATCATAGCCATGTTGGCATATCTATTAATGATGATGACATTATTCAAAGTCAATTATTGATAGACTCAATGGTGGCTGGTAATGCGCAAGAGACAGTGCCCTTTGGTGAGATCAATTATGGAGTTTGCCCTAATTTACTACCTTGA

Protein sequence

>MS.gene067644.t1

MARSKVKLAFIVNDAARKESYKKRRKGLLKKVAELSTLCGIEAYAIVYGPYEPEPEIWPSPEGVQSVLSKFMTMHEFQKCKKMMNQETFLTQRVLKAEEKLKKQRKENREQEMTILMSHCLNEGRVVHDNMSTDIGRRLAATVPPPPPAASRSEEMTIMDHSHVGISINDDDIIQSQLLIDSMVAGNAQETVPFGEINYGVCPNLLP