Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067645.t1 | XP_003605494.2 | 71.3 | 244 | 35 | 2 | 1 | 222 | 1 | 231 | 7.20E-88 | 333.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067645.t1 | Q9FJK3 | 54.5 | 154 | 69 | 1 | 1 | 154 | 1 | 153 | 3.1e-39 | 163.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067645.t1 | G7JN54 | 71.3 | 244 | 35 | 2 | 1 | 222 | 1 | 231 | 5.2e-88 | 333.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene067645.t1 | TF | MADS-M-type |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067645.t1 | MTR_4g031910 | 73.504 | 234 | 45 | 2 | 1 | 222 | 1 | 229 | 4.38e-115 | 328 |
MS.gene067645.t1 | MTR_4g032290 | 71.311 | 244 | 35 | 2 | 1 | 222 | 1 | 231 | 6.92e-112 | 320 |
MS.gene067645.t1 | MTR_4g032620 | 58.874 | 231 | 86 | 1 | 1 | 222 | 1 | 231 | 6.81e-97 | 282 |
MS.gene067645.t1 | MTR_8g036130 | 58.704 | 247 | 77 | 4 | 1 | 222 | 1 | 247 | 2.30e-91 | 268 |
MS.gene067645.t1 | MTR_4g032260 | 81.529 | 157 | 29 | 0 | 1 | 157 | 1 | 157 | 1.67e-83 | 245 |
MS.gene067645.t1 | MTR_3g065100 | 48.548 | 241 | 99 | 4 | 1 | 219 | 1 | 238 | 3.69e-64 | 199 |
MS.gene067645.t1 | MTR_3g466980 | 45.575 | 226 | 109 | 3 | 1 | 222 | 1 | 216 | 3.21e-62 | 194 |
MS.gene067645.t1 | MTR_2g035610 | 72.951 | 122 | 33 | 0 | 1 | 122 | 1 | 122 | 1.38e-51 | 163 |
MS.gene067645.t1 | MTR_4g032270 | 57.664 | 137 | 43 | 2 | 94 | 222 | 2 | 131 | 3.19e-47 | 152 |
MS.gene067645.t1 | MTR_5g075380 | 46.452 | 155 | 82 | 1 | 1 | 155 | 1 | 154 | 2.68e-45 | 148 |
MS.gene067645.t1 | MTR_3g466830 | 47.020 | 151 | 79 | 1 | 3 | 153 | 2 | 151 | 6.90e-45 | 147 |
MS.gene067645.t1 | MTR_4g063790 | 44.156 | 154 | 86 | 0 | 1 | 154 | 1 | 154 | 1.14e-44 | 147 |
MS.gene067645.t1 | MTR_3g467080 | 42.308 | 156 | 90 | 0 | 1 | 156 | 1 | 156 | 2.01e-42 | 141 |
MS.gene067645.t1 | MTR_5g047580 | 44.872 | 156 | 84 | 2 | 1 | 156 | 1 | 154 | 3.30e-41 | 138 |
MS.gene067645.t1 | MTR_3g031100 | 35.071 | 211 | 129 | 3 | 1 | 206 | 1 | 208 | 2.72e-40 | 138 |
MS.gene067645.t1 | MTR_2g016210 | 38.983 | 177 | 107 | 1 | 1 | 176 | 1 | 177 | 4.73e-40 | 137 |
MS.gene067645.t1 | MTR_3g466890 | 44.079 | 152 | 84 | 1 | 3 | 154 | 2 | 152 | 1.71e-39 | 134 |
MS.gene067645.t1 | MTR_1g077390 | 41.667 | 156 | 89 | 2 | 1 | 156 | 1 | 154 | 1.61e-38 | 131 |
MS.gene067645.t1 | MTR_1g077320 | 44.231 | 156 | 85 | 2 | 1 | 156 | 1 | 154 | 1.61e-35 | 123 |
MS.gene067645.t1 | MTR_1g090783 | 40.260 | 154 | 90 | 2 | 3 | 156 | 2 | 153 | 2.62e-35 | 122 |
MS.gene067645.t1 | MTR_7g011950 | 43.590 | 156 | 86 | 2 | 1 | 156 | 1 | 154 | 4.13e-35 | 122 |
MS.gene067645.t1 | MTR_3g465410 | 43.651 | 126 | 71 | 0 | 29 | 154 | 1 | 126 | 1.48e-34 | 120 |
MS.gene067645.t1 | MTR_1g090710 | 38.961 | 154 | 93 | 1 | 1 | 154 | 1 | 153 | 2.36e-34 | 120 |
MS.gene067645.t1 | MTR_4g028720 | 42.949 | 156 | 87 | 2 | 1 | 156 | 1 | 154 | 5.73e-34 | 119 |
MS.gene067645.t1 | MTR_1g090697 | 40.667 | 150 | 87 | 2 | 1 | 150 | 1 | 148 | 8.19e-34 | 119 |
MS.gene067645.t1 | MTR_1g077300 | 43.590 | 156 | 84 | 2 | 1 | 156 | 1 | 152 | 1.15e-33 | 119 |
MS.gene067645.t1 | MTR_1g084950 | 43.590 | 156 | 86 | 2 | 1 | 156 | 1 | 154 | 3.05e-33 | 117 |
MS.gene067645.t1 | MTR_4g028800 | 77.143 | 70 | 14 | 1 | 1 | 70 | 1 | 68 | 5.05e-32 | 112 |
MS.gene067645.t1 | MTR_7g055800 | 52.137 | 117 | 28 | 2 | 1 | 117 | 1 | 89 | 1.15e-30 | 108 |
MS.gene067645.t1 | MTR_3g031240 | 32.692 | 156 | 105 | 0 | 1 | 156 | 1 | 156 | 1.85e-29 | 108 |
MS.gene067645.t1 | MTR_3g466900 | 39.837 | 123 | 73 | 1 | 32 | 154 | 2 | 123 | 5.63e-28 | 103 |
MS.gene067645.t1 | MTR_7g055790 | 54.054 | 111 | 33 | 1 | 1 | 111 | 59 | 151 | 2.04e-27 | 102 |
MS.gene067645.t1 | MTR_3g466930 | 37.398 | 123 | 76 | 1 | 32 | 154 | 2 | 123 | 1.45e-25 | 97.1 |
MS.gene067645.t1 | MTR_2g035580 | 36.306 | 157 | 99 | 1 | 1 | 157 | 1 | 156 | 2.26e-25 | 97.4 |
MS.gene067645.t1 | MTR_7g055940 | 50.943 | 106 | 24 | 2 | 1 | 106 | 1 | 78 | 3.17e-25 | 94.7 |
MS.gene067645.t1 | MTR_7g106510 | 39.370 | 127 | 77 | 0 | 3 | 129 | 6 | 132 | 8.62e-25 | 101 |
MS.gene067645.t1 | MTR_4g019670 | 40.157 | 127 | 76 | 0 | 3 | 129 | 6 | 132 | 8.67e-25 | 101 |
MS.gene067645.t1 | MTR_5g047560 | 35.256 | 156 | 83 | 3 | 1 | 156 | 1 | 138 | 8.18e-23 | 90.1 |
MS.gene067645.t1 | MTR_3g093900 | 32.394 | 142 | 96 | 0 | 3 | 144 | 6 | 147 | 3.36e-22 | 94.7 |
MS.gene067645.t1 | MTR_2g035590 | 60.494 | 81 | 32 | 0 | 74 | 154 | 1 | 81 | 4.16e-20 | 82.0 |
MS.gene067645.t1 | MTR_6g018920 | 35.398 | 113 | 66 | 4 | 1 | 107 | 1 | 112 | 1.72e-13 | 68.9 |
MS.gene067645.t1 | MTR_6g005450 | 35.398 | 113 | 66 | 4 | 1 | 107 | 1 | 112 | 2.00e-13 | 68.6 |
MS.gene067645.t1 | MTR_1g114730 | 32.743 | 113 | 69 | 3 | 1 | 107 | 1 | 112 | 3.89e-13 | 67.8 |
MS.gene067645.t1 | MTR_4g084780 | 38.739 | 111 | 52 | 2 | 74 | 168 | 1 | 111 | 3.15e-12 | 62.4 |
MS.gene067645.t1 | MTR_6g005440 | 36.283 | 113 | 65 | 4 | 1 | 107 | 1 | 112 | 3.14e-11 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067645.t1 | AT5G48670 | 54.545 | 154 | 69 | 1 | 1 | 154 | 1 | 153 | 4.28e-46 | 155 |
MS.gene067645.t1 | AT1G65300 | 42.857 | 168 | 86 | 2 | 3 | 161 | 2 | 168 | 1.12e-41 | 143 |
MS.gene067645.t1 | AT5G26630 | 42.927 | 205 | 106 | 2 | 1 | 195 | 1 | 204 | 2.71e-41 | 140 |
MS.gene067645.t1 | AT1G65330 | 43.452 | 168 | 87 | 2 | 3 | 163 | 2 | 168 | 2.37e-40 | 139 |
MS.gene067645.t1 | AT5G26650 | 43.421 | 152 | 85 | 1 | 5 | 156 | 3 | 153 | 6.02e-37 | 132 |
MS.gene067645.t1 | AT5G27960 | 42.763 | 152 | 86 | 1 | 5 | 156 | 3 | 153 | 2.71e-36 | 130 |
MS.gene067645.t1 | AT1G31630 | 37.500 | 168 | 96 | 3 | 3 | 163 | 2 | 167 | 1.02e-35 | 129 |
MS.gene067645.t1 | AT1G31640 | 39.073 | 151 | 90 | 2 | 3 | 153 | 2 | 150 | 3.23e-32 | 122 |
MS.gene067645.t1 | AT2G28700 | 36.723 | 177 | 107 | 2 | 1 | 175 | 1 | 174 | 9.70e-32 | 118 |
MS.gene067645.t1 | AT5G27810 | 55.914 | 93 | 41 | 0 | 29 | 121 | 1 | 93 | 1.59e-31 | 112 |
MS.gene067645.t1 | AT3G05860 | 36.709 | 158 | 99 | 1 | 1 | 158 | 1 | 157 | 4.33e-31 | 113 |
MS.gene067645.t1 | AT3G05860 | 36.709 | 158 | 99 | 1 | 1 | 158 | 1 | 157 | 1.43e-30 | 113 |
MS.gene067645.t1 | AT3G05860 | 36.709 | 158 | 99 | 1 | 1 | 158 | 1 | 157 | 1.70e-30 | 113 |
MS.gene067645.t1 | AT1G22590 | 31.481 | 162 | 107 | 1 | 1 | 162 | 1 | 158 | 1.19e-25 | 98.2 |
MS.gene067645.t1 | AT5G26580 | 35.714 | 154 | 84 | 2 | 1 | 154 | 1 | 139 | 1.78e-25 | 102 |
MS.gene067645.t1 | AT5G06500 | 35.032 | 157 | 100 | 2 | 1 | 157 | 1 | 155 | 7.84e-22 | 90.5 |
MS.gene067645.t1 | AT2G40210 | 36.420 | 162 | 100 | 2 | 1 | 162 | 1 | 159 | 3.78e-20 | 87.8 |
MS.gene067645.t1 | AT5G58890 | 38.583 | 127 | 67 | 5 | 6 | 123 | 6 | 130 | 1.67e-16 | 77.0 |
MS.gene067645.t1 | AT5G55690 | 42.308 | 78 | 38 | 2 | 1 | 71 | 1 | 78 | 1.63e-13 | 68.2 |
MS.gene067645.t1 | AT5G55690 | 42.308 | 78 | 38 | 2 | 1 | 71 | 1 | 78 | 1.63e-13 | 68.2 |
MS.gene067645.t1 | AT2G15660 | 30.973 | 113 | 73 | 2 | 38 | 150 | 31 | 138 | 9.34e-12 | 63.2 |
MS.gene067645.t1 | AT5G27090 | 28.834 | 163 | 94 | 6 | 7 | 164 | 23 | 168 | 9.23e-11 | 59.3 |
Find 62 sgRNAs with CRISPR-Local
Find 61 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCCTTCAAGGTAGTAAATT+AGG | 0.161446 | 4.1:+69040603 | None:intergenic |
AGAAACAAAGAAAAGAAAAT+AGG | 0.231520 | 4.1:-69040950 | MS.gene067645:CDS |
CCCTTTGGTGAGATCAATTC+TGG | 0.238779 | 4.1:-69040633 | MS.gene067645:CDS |
GAGCGAAGAAATGGCAATTA+TGG | 0.251384 | 4.1:-69040754 | MS.gene067645:CDS |
TACCAATGTCCTTCAAATTA+TGG | 0.254451 | 4.1:+69040823 | None:intergenic |
AAGAAAGGGTCTATTGAAAA+AGG | 0.312767 | 4.1:-69041183 | MS.gene067645:CDS |
ATCTCTGGCTGAGGCTCATA+AGG | 0.350996 | 4.1:+69041107 | None:intergenic |
AAAATGTCATCACCATTAAT+AGG | 0.355958 | 4.1:+69040711 | None:intergenic |
ATGAGCCTCAGCCAGAGATT+TGG | 0.374512 | 4.1:-69041103 | MS.gene067645:CDS |
TTTGCAAAGTCAATTATTGA+TGG | 0.379269 | 4.1:-69040691 | MS.gene067645:CDS |
GCCCTAATTTACTACCTTGA+AGG | 0.380748 | 4.1:-69040605 | None:intergenic |
TCCTTCAAGGTAGTAAATTA+GGG | 0.396741 | 4.1:+69040604 | None:intergenic |
GAAGGACATTGGTAGACGTT+TGG | 0.410243 | 4.1:-69040814 | MS.gene067645:CDS |
TCTGGTGAAGGCCAAATCTC+TGG | 0.413104 | 4.1:+69041092 | None:intergenic |
GAAACAAAGAAAAGAAAATA+GGG | 0.419680 | 4.1:-69040949 | MS.gene067645:CDS |
TTATGGGTCATGGGCATGTT+GGG | 0.421401 | 4.1:-69040737 | MS.gene067645:CDS |
AGCGAAGAAATGGCAATTAT+GGG | 0.425600 | 4.1:-69040753 | MS.gene067645:CDS |
AGCATCTAGGAGCGAAGAAA+TGG | 0.428793 | 4.1:-69040763 | MS.gene067645:CDS |
GTTGATTGACCATAATTTGA+AGG | 0.445081 | 4.1:-69040832 | MS.gene067645:CDS |
GATGCTGCTGGAGGTGGTAG+TGG | 0.453710 | 4.1:+69040780 | None:intergenic |
CTCCTAGATGCTGCTGGAGG+TGG | 0.459401 | 4.1:+69040774 | None:intergenic |
CACAACCATGGCTAGAAGTA+AGG | 0.461347 | 4.1:-69041261 | None:intergenic |
CTCATAAGGGCCATACACTA+TGG | 0.468858 | 4.1:+69041121 | None:intergenic |
ATCATACAAGAAAAGAAGAA+AGG | 0.473094 | 4.1:-69041198 | MS.gene067645:CDS |
CTTGACACAAAGGGTTCTGA+AGG | 0.478789 | 4.1:-69040988 | MS.gene067645:CDS |
TCAATTATTGATGGACTCAA+TGG | 0.482426 | 4.1:-69040682 | MS.gene067645:CDS |
TTGATTTGAGTTATCTTACT+TGG | 0.482489 | 4.1:-69040854 | MS.gene067645:CDS |
CATGTTGGGATACCTATTAA+TGG | 0.484515 | 4.1:-69040723 | MS.gene067645:CDS |
TCTTCGCTCCTAGATGCTGC+TGG | 0.487238 | 4.1:+69040768 | None:intergenic |
GAAATGGCAATTATGGGTCA+TGG | 0.489114 | 4.1:-69040747 | MS.gene067645:CDS |
ATTATGGGTCATGGGCATGT+TGG | 0.494579 | 4.1:-69040738 | MS.gene067645:CDS |
TGCGGCATCATTGACAATGA+AGG | 0.507200 | 4.1:+69041229 | None:intergenic |
AGAGACTTTCTTGACACAAA+GGG | 0.517022 | 4.1:-69040997 | MS.gene067645:CDS |
GACCATAATTTGAAGGACAT+TGG | 0.517963 | 4.1:-69040825 | MS.gene067645:CDS |
GGACATTGGTAGACGTTTGG+CGG | 0.524285 | 4.1:-69040811 | MS.gene067645:CDS |
TTTGTGTCAAGAAAGTCTCT+TGG | 0.525855 | 4.1:+69041000 | None:intergenic |
TCATACAAGAAAAGAAGAAA+GGG | 0.526600 | 4.1:-69041197 | MS.gene067645:CDS |
TTTAACCTTACTTCTAGCCA+TGG | 0.533701 | 4.1:+69041256 | None:intergenic |
TACCACCTCCAGCAGCATCT+AGG | 0.540428 | 4.1:-69040776 | MS.gene067645:CDS |
ATGTCTCATTGTCTCAATGA+AGG | 0.542205 | 4.1:-69040906 | MS.gene067645:CDS |
CCAGAATTGATCTCACCAAA+GGG | 0.554343 | 4.1:+69040633 | None:intergenic |
GTGCAAGAGACAGTGCCCTT+TGG | 0.557727 | 4.1:-69040648 | MS.gene067645:CDS |
GAAGCCTGTGCCATAGTGTA+TGG | 0.559714 | 4.1:-69041131 | MS.gene067645:CDS |
GAAGGCCAAATCTCTGGCTG+AGG | 0.560020 | 4.1:+69041098 | None:intergenic |
AAATGGCAATTATGGGTCAT+GGG | 0.564401 | 4.1:-69040746 | MS.gene067645:CDS |
TCTCTGGCTGAGGCTCATAA+GGG | 0.571102 | 4.1:+69041108 | None:intergenic |
GAGATTTGGCCTTCACCAGA+GGG | 0.580805 | 4.1:-69041089 | MS.gene067645:CDS |
TCCAGAATTGATCTCACCAA+AGG | 0.590517 | 4.1:+69040632 | None:intergenic |
ACAGGCTTCAATGCCACAGA+GGG | 0.601811 | 4.1:+69041145 | None:intergenic |
GATTTGGCCTTCACCAGAGG+GGG | 0.601928 | 4.1:-69041087 | MS.gene067645:CDS |
CTTGTATGATTCTTTCCTTG+CGG | 0.605657 | 4.1:+69041211 | None:intergenic |
TTGATGGACTCAATGGTGGC+TGG | 0.607204 | 4.1:-69040675 | MS.gene067645:CDS |
AAGAGACTTTCTTGACACAA+AGG | 0.607804 | 4.1:-69040998 | MS.gene067645:CDS |
AGAGATTTGGCCTTCACCAG+AGG | 0.617598 | 4.1:-69041090 | MS.gene067645:CDS |
AGGGCCATACACTATGGCAC+AGG | 0.641363 | 4.1:+69041127 | None:intergenic |
TCATTGTCAATGATGCCGCA+AGG | 0.664783 | 4.1:-69041226 | MS.gene067645:CDS |
ATTATTGATGGACTCAATGG+TGG | 0.666274 | 4.1:-69040679 | MS.gene067645:CDS |
TCGCTCCTAGATGCTGCTGG+AGG | 0.676090 | 4.1:+69040771 | None:intergenic |
GCTGAACTTAGCACCCTCTG+TGG | 0.677042 | 4.1:-69041158 | MS.gene067645:CDS |
TGTGCACGACAATATGTCAA+CGG | 0.688304 | 4.1:-69040877 | MS.gene067645:CDS |
CACAGGCTTCAATGCCACAG+AGG | 0.696692 | 4.1:+69041144 | None:intergenic |
AGATTTGGCCTTCACCAGAG+GGG | 0.703414 | 4.1:-69041088 | MS.gene067645:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGAAACAAAGAAAAGAAAAT+AGG | - | chr4.1:69040912-69040931 | MS.gene067645:CDS | 20.0% |
!! | GAAACAAAGAAAAGAAAATA+GGG | - | chr4.1:69040913-69040932 | MS.gene067645:CDS | 20.0% |
! | AAAATGTCATCACCATTAAT+AGG | + | chr4.1:69041154-69041173 | None:intergenic | 25.0% |
! | ATCATACAAGAAAAGAAGAA+AGG | - | chr4.1:69040664-69040683 | MS.gene067645:CDS | 25.0% |
! | TCATACAAGAAAAGAAGAAA+GGG | - | chr4.1:69040665-69040684 | MS.gene067645:CDS | 25.0% |
! | TTTGCAAAGTCAATTATTGA+TGG | - | chr4.1:69041171-69041190 | MS.gene067645:CDS | 25.0% |
!! | TTGATTTGAGTTATCTTACT+TGG | - | chr4.1:69041008-69041027 | MS.gene067645:CDS | 25.0% |
AAGAAAGGGTCTATTGAAAA+AGG | - | chr4.1:69040679-69040698 | MS.gene067645:CDS | 30.0% | |
GTTGATTGACCATAATTTGA+AGG | - | chr4.1:69041030-69041049 | MS.gene067645:CDS | 30.0% | |
TACCAATGTCCTTCAAATTA+TGG | + | chr4.1:69041042-69041061 | None:intergenic | 30.0% | |
!! | TCAATTATTGATGGACTCAA+TGG | - | chr4.1:69041180-69041199 | MS.gene067645:CDS | 30.0% |
AAATGGCAATTATGGGTCAT+GGG | - | chr4.1:69041116-69041135 | MS.gene067645:CDS | 35.0% | |
AAGAGACTTTCTTGACACAA+AGG | - | chr4.1:69040864-69040883 | MS.gene067645:CDS | 35.0% | |
AGAGACTTTCTTGACACAAA+GGG | - | chr4.1:69040865-69040884 | MS.gene067645:CDS | 35.0% | |
AGCGAAGAAATGGCAATTAT+GGG | - | chr4.1:69041109-69041128 | MS.gene067645:CDS | 35.0% | |
ATGTCTCATTGTCTCAATGA+AGG | - | chr4.1:69040956-69040975 | MS.gene067645:CDS | 35.0% | |
CATGTTGGGATACCTATTAA+TGG | - | chr4.1:69041139-69041158 | MS.gene067645:CDS | 35.0% | |
CTTGTATGATTCTTTCCTTG+CGG | + | chr4.1:69040654-69040673 | None:intergenic | 35.0% | |
GACCATAATTTGAAGGACAT+TGG | - | chr4.1:69041037-69041056 | MS.gene067645:CDS | 35.0% | |
TTTGTGTCAAGAAAGTCTCT+TGG | + | chr4.1:69040865-69040884 | None:intergenic | 35.0% | |
!! | ATTATTGATGGACTCAATGG+TGG | - | chr4.1:69041183-69041202 | MS.gene067645:CDS | 35.0% |
CCAGAATTGATCTCACCAAA+GGG | + | chr4.1:69041232-69041251 | None:intergenic | 40.0% | |
GAAATGGCAATTATGGGTCA+TGG | - | chr4.1:69041115-69041134 | MS.gene067645:CDS | 40.0% | |
GAGCGAAGAAATGGCAATTA+TGG | - | chr4.1:69041108-69041127 | MS.gene067645:CDS | 40.0% | |
TCCAGAATTGATCTCACCAA+AGG | + | chr4.1:69041233-69041252 | None:intergenic | 40.0% | |
TGTGCACGACAATATGTCAA+CGG | - | chr4.1:69040985-69041004 | MS.gene067645:CDS | 40.0% | |
!! | CGTCATGAATTTTGAGAGCA+CGG | + | chr4.1:69040807-69040826 | None:intergenic | 40.0% |
!! | TGAATTTTGAGAGCACGGAT+TGG | + | chr4.1:69040802-69040821 | None:intergenic | 40.0% |
AGCATCTAGGAGCGAAGAAA+TGG | - | chr4.1:69041099-69041118 | MS.gene067645:CDS | 45.0% | |
ATTATGGGTCATGGGCATGT+TGG | - | chr4.1:69041124-69041143 | MS.gene067645:CDS | 45.0% | |
CCCTTTGGTGAGATCAATTC+TGG | - | chr4.1:69041229-69041248 | MS.gene067645:CDS | 45.0% | |
CTCATAAGGGCCATACACTA+TGG | + | chr4.1:69040744-69040763 | None:intergenic | 45.0% | |
GAAGGACATTGGTAGACGTT+TGG | - | chr4.1:69041048-69041067 | MS.gene067645:CDS | 45.0% | |
TCATTGTCAATGATGCCGCA+AGG | - | chr4.1:69040636-69040655 | MS.gene067645:CDS | 45.0% | |
TGCGGCATCATTGACAATGA+AGG | + | chr4.1:69040636-69040655 | None:intergenic | 45.0% | |
TTATGGGTCATGGGCATGTT+GGG | - | chr4.1:69041125-69041144 | MS.gene067645:CDS | 45.0% | |
! | CTTGACACAAAGGGTTCTGA+AGG | - | chr4.1:69040874-69040893 | MS.gene067645:CDS | 45.0% |
ACAGGCTTCAATGCCACAGA+GGG | + | chr4.1:69040720-69040739 | None:intergenic | 50.0% | |
ATCTCTGGCTGAGGCTCATA+AGG | + | chr4.1:69040758-69040777 | None:intergenic | 50.0% | |
ATGAGCCTCAGCCAGAGATT+TGG | - | chr4.1:69040759-69040778 | MS.gene067645:CDS | 50.0% | |
GAAGCCTGTGCCATAGTGTA+TGG | - | chr4.1:69040731-69040750 | MS.gene067645:CDS | 50.0% | |
GGACATTGGTAGACGTTTGG+CGG | - | chr4.1:69041051-69041070 | MS.gene067645:CDS | 50.0% | |
TCTCTGGCTGAGGCTCATAA+GGG | + | chr4.1:69040757-69040776 | None:intergenic | 50.0% | |
TCTGGTGAAGGCCAAATCTC+TGG | + | chr4.1:69040773-69040792 | None:intergenic | 50.0% | |
! | AGAGATTTGGCCTTCACCAG+AGG | - | chr4.1:69040772-69040791 | MS.gene067645:CDS | 50.0% |
! | AGATTTGGCCTTCACCAGAG+GGG | - | chr4.1:69040774-69040793 | MS.gene067645:CDS | 50.0% |
! | GAGATTTGGCCTTCACCAGA+GGG | - | chr4.1:69040773-69040792 | MS.gene067645:CDS | 50.0% |
!! | TTGATGGACTCAATGGTGGC+TGG | - | chr4.1:69041187-69041206 | MS.gene067645:CDS | 50.0% |
AGGGCCATACACTATGGCAC+AGG | + | chr4.1:69040738-69040757 | None:intergenic | 55.0% | |
CACAGGCTTCAATGCCACAG+AGG | + | chr4.1:69040721-69040740 | None:intergenic | 55.0% | |
GAAGGCCAAATCTCTGGCTG+AGG | + | chr4.1:69040767-69040786 | None:intergenic | 55.0% | |
GCTGAACTTAGCACCCTCTG+TGG | - | chr4.1:69040704-69040723 | MS.gene067645:CDS | 55.0% | |
GTGCAAGAGACAGTGCCCTT+TGG | - | chr4.1:69041214-69041233 | MS.gene067645:CDS | 55.0% | |
TACCACCTCCAGCAGCATCT+AGG | - | chr4.1:69041086-69041105 | MS.gene067645:CDS | 55.0% | |
TCTTCGCTCCTAGATGCTGC+TGG | + | chr4.1:69041097-69041116 | None:intergenic | 55.0% | |
! | GATTTGGCCTTCACCAGAGG+GGG | - | chr4.1:69040775-69040794 | MS.gene067645:CDS | 55.0% |
CTCCTAGATGCTGCTGGAGG+TGG | + | chr4.1:69041091-69041110 | None:intergenic | 60.0% | |
GATGCTGCTGGAGGTGGTAG+TGG | + | chr4.1:69041085-69041104 | None:intergenic | 60.0% | |
GATTGGACCCCCTCTGGTGA+AGG | + | chr4.1:69040785-69040804 | None:intergenic | 60.0% | |
TCGCTCCTAGATGCTGCTGG+AGG | + | chr4.1:69041094-69041113 | None:intergenic | 60.0% | |
!! | AGCACGGATTGGACCCCCTC+TGG | + | chr4.1:69040791-69040810 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 69040608 | 69041276 | 69040608 | ID=MS.gene067645 |
chr4.1 | mRNA | 69040608 | 69041276 | 69040608 | ID=MS.gene067645.t1;Parent=MS.gene067645 |
chr4.1 | exon | 69040608 | 69041276 | 69040608 | ID=MS.gene067645.t1.exon1;Parent=MS.gene067645.t1 |
chr4.1 | CDS | 69040608 | 69041276 | 69040608 | ID=cds.MS.gene067645.t1;Parent=MS.gene067645.t1 |
Gene Sequence |
Protein sequence |