Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06780.t1 | KEH35534.1 | 80.5 | 313 | 53 | 1 | 1 | 305 | 1 | 313 | 5.90E-138 | 501.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06780.t1 | Q7XJK8 | 30.7 | 179 | 105 | 3 | 6 | 176 | 2 | 169 | 1.1e-15 | 86.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06780.t1 | A0A072V0I7 | 80.5 | 313 | 53 | 1 | 1 | 305 | 1 | 313 | 4.2e-138 | 501.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene06780.t1 | TF | MADS-M-type |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06780.t1 | MTR_3g093900 | 74.645 | 564 | 82 | 4 | 1 | 503 | 1 | 564 | 0.0 | 809 |
| MS.gene06780.t1 | MTR_7g106510 | 45.747 | 529 | 229 | 10 | 1 | 503 | 1 | 497 | 1.13e-116 | 353 |
| MS.gene06780.t1 | MTR_4g019670 | 44.834 | 542 | 231 | 13 | 1 | 503 | 1 | 513 | 1.28e-114 | 348 |
| MS.gene06780.t1 | MTR_8g467500 | 46.715 | 274 | 122 | 3 | 13 | 266 | 13 | 282 | 1.41e-63 | 209 |
| MS.gene06780.t1 | MTR_5g075380 | 32.258 | 155 | 105 | 0 | 7 | 161 | 4 | 158 | 3.93e-23 | 96.3 |
| MS.gene06780.t1 | MTR_2g016210 | 30.968 | 155 | 106 | 1 | 7 | 160 | 4 | 158 | 3.87e-20 | 90.1 |
| MS.gene06780.t1 | MTR_4g032620 | 31.788 | 151 | 102 | 1 | 6 | 155 | 3 | 153 | 4.98e-20 | 89.4 |
| MS.gene06780.t1 | MTR_8g036130 | 33.544 | 158 | 100 | 3 | 4 | 157 | 1 | 157 | 8.93e-20 | 89.0 |
| MS.gene06780.t1 | MTR_4g031910 | 32.051 | 156 | 105 | 1 | 6 | 160 | 3 | 158 | 1.11e-18 | 85.5 |
| MS.gene06780.t1 | MTR_3g466980 | 26.974 | 152 | 111 | 0 | 6 | 157 | 3 | 154 | 4.31e-17 | 80.9 |
| MS.gene06780.t1 | MTR_2g035610 | 32.500 | 120 | 81 | 0 | 6 | 125 | 3 | 122 | 1.29e-16 | 76.6 |
| MS.gene06780.t1 | MTR_3g466890 | 31.034 | 145 | 100 | 0 | 6 | 150 | 2 | 146 | 2.50e-16 | 77.0 |
| MS.gene06780.t1 | MTR_3g065100 | 27.564 | 156 | 113 | 0 | 6 | 161 | 3 | 158 | 4.04e-16 | 78.2 |
| MS.gene06780.t1 | MTR_3g466830 | 27.389 | 157 | 114 | 0 | 6 | 162 | 2 | 158 | 5.91e-16 | 75.9 |
| MS.gene06780.t1 | MTR_4g032290 | 31.148 | 122 | 83 | 1 | 37 | 157 | 34 | 155 | 1.50e-15 | 76.6 |
| MS.gene06780.t1 | MTR_1g090697 | 29.677 | 155 | 108 | 1 | 6 | 160 | 3 | 156 | 2.29e-14 | 71.2 |
| MS.gene06780.t1 | MTR_4g032260 | 35.417 | 96 | 62 | 0 | 37 | 132 | 34 | 129 | 4.18e-14 | 70.5 |
| MS.gene06780.t1 | MTR_1g090783 | 26.897 | 145 | 105 | 1 | 6 | 150 | 2 | 145 | 4.29e-14 | 70.5 |
| MS.gene06780.t1 | MTR_1g090710 | 28.289 | 152 | 98 | 2 | 6 | 157 | 3 | 143 | 5.07e-14 | 70.1 |
| MS.gene06780.t1 | MTR_3g031100 | 25.000 | 156 | 110 | 2 | 6 | 157 | 3 | 155 | 4.24e-13 | 69.7 |
| MS.gene06780.t1 | MTR_3g466900 | 27.778 | 126 | 91 | 0 | 35 | 160 | 2 | 127 | 3.13e-12 | 64.3 |
| MS.gene06780.t1 | MTR_4g028800 | 38.571 | 70 | 41 | 1 | 7 | 76 | 4 | 71 | 4.14e-12 | 62.0 |
| MS.gene06780.t1 | MTR_3g466930 | 26.984 | 126 | 92 | 0 | 35 | 160 | 2 | 127 | 2.28e-11 | 62.0 |
| MS.gene06780.t1 | MTR_5g047580 | 29.703 | 101 | 70 | 1 | 6 | 106 | 3 | 102 | 5.33e-11 | 61.2 |
| MS.gene06780.t1 | MTR_4g063790 | 29.293 | 99 | 70 | 0 | 8 | 106 | 5 | 103 | 6.08e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06780.t1 | AT5G27960 | 33.813 | 139 | 84 | 1 | 7 | 137 | 2 | 140 | 2.70e-20 | 92.0 |
| MS.gene06780.t1 | AT5G26650 | 32.374 | 139 | 86 | 1 | 7 | 137 | 2 | 140 | 4.29e-20 | 92.4 |
| MS.gene06780.t1 | AT1G65300 | 32.258 | 155 | 96 | 2 | 6 | 152 | 2 | 155 | 1.24e-19 | 89.4 |
| MS.gene06780.t1 | AT2G40210 | 28.655 | 171 | 119 | 2 | 4 | 174 | 1 | 168 | 1.29e-16 | 82.0 |
| MS.gene06780.t1 | AT1G65330 | 26.012 | 173 | 119 | 2 | 8 | 172 | 4 | 175 | 5.31e-14 | 72.8 |
| MS.gene06780.t1 | AT3G05860 | 26.351 | 148 | 107 | 2 | 4 | 150 | 1 | 147 | 8.49e-14 | 71.6 |
| MS.gene06780.t1 | AT3G05860 | 26.351 | 148 | 107 | 2 | 4 | 150 | 1 | 147 | 9.48e-14 | 71.6 |
| MS.gene06780.t1 | AT1G31630 | 32.520 | 123 | 81 | 2 | 6 | 128 | 2 | 122 | 1.61e-13 | 72.4 |
| MS.gene06780.t1 | AT5G48670 | 28.387 | 155 | 109 | 2 | 6 | 159 | 3 | 156 | 2.46e-13 | 71.6 |
| MS.gene06780.t1 | AT3G05860 | 30.000 | 120 | 82 | 2 | 6 | 124 | 3 | 121 | 2.75e-13 | 69.3 |
| MS.gene06780.t1 | AT2G28700 | 32.812 | 128 | 72 | 3 | 4 | 124 | 1 | 121 | 2.89e-13 | 71.2 |
| MS.gene06780.t1 | AT2G15660 | 29.927 | 137 | 87 | 3 | 41 | 174 | 31 | 161 | 3.17e-13 | 70.1 |
| MS.gene06780.t1 | AT5G06500 | 26.667 | 150 | 109 | 1 | 6 | 155 | 3 | 151 | 2.23e-11 | 64.3 |
| MS.gene06780.t1 | AT1G22590 | 24.684 | 158 | 110 | 3 | 6 | 160 | 3 | 154 | 4.35e-11 | 62.0 |
Find 91 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGACAATATGGTAGATTT+TGG | 0.154646 | 3.3:+78167639 | MS.gene06780:CDS |
| ATGCCTCCTCAAGGCGATTT+TGG | 0.215144 | 3.3:+78168032 | MS.gene06780:CDS |
| ATACCGCCACACACATATTT+TGG | 0.262443 | 3.3:+78167810 | MS.gene06780:CDS |
| TTCGTTATATTTGTTGATCT+TGG | 0.266394 | 3.3:-78167409 | None:intergenic |
| TGACCTATTGTTTCGACATT+AGG | 0.272251 | 3.3:-78168350 | None:intergenic |
| GAAAGGATTGTTCACTAAAA+TGG | 0.281180 | 3.3:+78167179 | MS.gene06780:CDS |
| CTGACTTATGTGGAGGAAAA+AGG | 0.299572 | 3.3:+78167363 | MS.gene06780:CDS |
| AATGGAAGCAACTTCAATTA+AGG | 0.312514 | 3.3:+78168701 | MS.gene06780:CDS |
| AAACACAAATATGGTAGATT+TGG | 0.314468 | 3.3:+78167665 | MS.gene06780:CDS |
| GTTATTCCCTAGAGGAAATT+CGG | 0.319248 | 3.3:+78167935 | MS.gene06780:CDS |
| ATTCCTAATGTCGAAACAAT+AGG | 0.349451 | 3.3:+78168347 | MS.gene06780:CDS |
| AGAGAGGGAGGTTTATTAAG+AGG | 0.383910 | 3.3:-78167588 | None:intergenic |
| TGCTTTAGACAATGACAATA+TGG | 0.384922 | 3.3:+78167629 | MS.gene06780:CDS |
| TTCGTAGCCAAAACAACATT+GGG | 0.385715 | 3.3:+78168621 | MS.gene06780:CDS |
| TTATTCCCTAGAGGAAATTC+GGG | 0.398930 | 3.3:+78167936 | MS.gene06780:CDS |
| TAACAACACAGATAGCAAAA+TGG | 0.410915 | 3.3:+78168394 | MS.gene06780:CDS |
| ACAATAGGTCAAGTAAGCTT+TGG | 0.426113 | 3.3:+78168362 | MS.gene06780:CDS |
| GGAGGTCAATGCAACTTTGA+AGG | 0.427024 | 3.3:+78168251 | MS.gene06780:intron |
| TTGATGCTTTGCTTCCTCAA+TGG | 0.441644 | 3.3:+78168450 | MS.gene06780:CDS |
| TTCGTTTAAAATTTGATGCA+TGG | 0.443888 | 3.3:-78167451 | None:intergenic |
| ACTCATTTGATCAGCTTGCT+TGG | 0.447445 | 3.3:-78167688 | None:intergenic |
| CTTCCTCAATGGAATTTCAC+AGG | 0.455585 | 3.3:+78168461 | MS.gene06780:CDS |
| CTCCATGTTGCTACCTAGAT+AGG | 0.463692 | 3.3:-78167970 | None:intergenic |
| ATAGGTCAAGTAAGCTTTGG+AGG | 0.477721 | 3.3:+78168365 | MS.gene06780:CDS |
| TTTCATCAAGGCAATGTTGA+AGG | 0.479948 | 3.3:+78168557 | MS.gene06780:CDS |
| ACAGGTTCTGATAACAATGT+AGG | 0.484981 | 3.3:+78168479 | MS.gene06780:CDS |
| TAAAAGTCATGGTTGAGATC+AGG | 0.485469 | 3.3:+78167088 | None:intergenic |
| GTTGATTTGTTATTTCATCA+AGG | 0.487404 | 3.3:+78168545 | MS.gene06780:CDS |
| TTTCTTGATCGTACTGACTC+TGG | 0.497017 | 3.3:-78167327 | None:intergenic |
| TTTCCTCCACATAAGTCAGT+TGG | 0.504777 | 3.3:-78167359 | None:intergenic |
| ATAGAGATGGTGATAATATG+AGG | 0.515278 | 3.3:+78168597 | MS.gene06780:CDS |
| AACATGTCAACACCGCCACT+TGG | 0.520464 | 3.3:-78168323 | None:intergenic |
| TGACGGTGTTGGTGCTATGT+TGG | 0.535172 | 3.3:+78167734 | MS.gene06780:CDS |
| GACATCGGCAGTGGCAGAGA+GGG | 0.542637 | 3.3:-78167603 | None:intergenic |
| TCATGGTTGAGATCAGGAAA+AGG | 0.542864 | 3.3:+78167094 | None:intergenic |
| GTAGCGAATCTTTCTTTGAG+TGG | 0.550195 | 3.3:-78167145 | None:intergenic |
| CGCTACGTGAACAGAGTGAA+AGG | 0.557937 | 3.3:+78167162 | MS.gene06780:CDS |
| AATCTTGATGAATATGGCAT+GGG | 0.562864 | 3.3:+78168647 | MS.gene06780:CDS |
| ATTCGTAGCCAAAACAACAT+TGG | 0.568395 | 3.3:+78168620 | MS.gene06780:CDS |
| CCTAGTGGTGGTGACGGTGT+TGG | 0.572728 | 3.3:+78167723 | MS.gene06780:CDS |
| AAATCTTGATGAATATGGCA+TGG | 0.578232 | 3.3:+78168646 | MS.gene06780:CDS |
| ATTGTCAACAGAGTTTGCAT+TGG | 0.580353 | 3.3:-78168675 | None:intergenic |
| AACTCTGTTGACAATAACAA+TGG | 0.580414 | 3.3:+78168683 | MS.gene06780:CDS |
| CCAACACCGTCACCACCACT+AGG | 0.583076 | 3.3:-78167723 | None:intergenic |
| TCACCTCATGCAAATCATAG+TGG | 0.589731 | 3.3:+78168422 | MS.gene06780:CDS |
| AAAGCACATGACATCGGCAG+TGG | 0.598200 | 3.3:-78167612 | None:intergenic |
| ATCGGCAGTGGCAGAGAGGG+AGG | 0.599362 | 3.3:-78167600 | None:intergenic |
| GACGGACCAACTGACTTATG+TGG | 0.599548 | 3.3:+78167353 | MS.gene06780:CDS |
| GTAGATAACATGCCTCCTCA+AGG | 0.611282 | 3.3:+78168023 | MS.gene06780:CDS |
| CAAGCTGATCAAATGAGTGA+TGG | 0.615984 | 3.3:+78167693 | MS.gene06780:CDS |
| ACATTACATATCGCAACATG+TGG | 0.617634 | 3.3:+78168282 | MS.gene06780:CDS |
| CACATGCTTCAATACCACAC+AGG | 0.617665 | 3.3:-78167215 | None:intergenic |
| GACATGGAGGTATCACTGCA+TGG | 0.617708 | 3.3:+78168506 | MS.gene06780:CDS |
| ATACCGCCGCATGTAAGTCA+TGG | 0.618320 | 3.3:+78167993 | MS.gene06780:CDS |
| TAACAATATTTACAGCAACA+TGG | 0.622242 | 3.3:+78167785 | MS.gene06780:CDS |
| TAACAATGTAGGCAACGACA+TGG | 0.622250 | 3.3:+78168490 | MS.gene06780:CDS |
| TCATGATATGGCCACACTGA+GGG | 0.622338 | 3.3:-78167267 | None:intergenic |
| TTTAATCCTAGTGGTGGTGA+CGG | 0.628750 | 3.3:+78167717 | MS.gene06780:CDS |
| CCTCCAAAATCGCCTTGAGG+AGG | 0.629694 | 3.3:-78168035 | None:intergenic |
| GATGATATGTTATTCCCTAG+AGG | 0.633514 | 3.3:+78167927 | MS.gene06780:CDS |
| CCTCATGCAAATCATAGTGG+TGG | 0.635594 | 3.3:+78168425 | MS.gene06780:CDS |
| GAACCTGTGAAATTCCATTG+AGG | 0.637565 | 3.3:-78168464 | None:intergenic |
| AGTACGATCAAGAAATATGA+CGG | 0.638439 | 3.3:+78167335 | MS.gene06780:CDS |
| TATATTTGTTGATCTTGGCG+AGG | 0.643058 | 3.3:-78167404 | None:intergenic |
| ACTGAGGGTCTTGAACCACC+TGG | 0.643320 | 3.3:-78167252 | None:intergenic |
| ACATGCTTCAATACCACACA+GGG | 0.652435 | 3.3:-78167214 | None:intergenic |
| TTGTCTAAAGCACATGACAT+CGG | 0.658558 | 3.3:-78167618 | None:intergenic |
| TTCCCTAGAGGAAATTCGGG+GGG | 0.658559 | 3.3:+78167939 | MS.gene06780:CDS |
| TAACCTCTAAAACTAAACTG+AGG | 0.659116 | 3.3:-78168122 | None:intergenic |
| CGTAGCCAAAACAACATTGG+GGG | 0.666330 | 3.3:+78168623 | MS.gene06780:CDS |
| CCACCACCAAAATATGTGTG+TGG | 0.667305 | 3.3:-78167816 | None:intergenic |
| ATCTTGATGAATATGGCATG+GGG | 0.670439 | 3.3:+78168648 | MS.gene06780:CDS |
| AAACCTCCAAAATCGCCTTG+AGG | 0.673422 | 3.3:-78168038 | None:intergenic |
| CCACCAAAATATGTGTGTGG+CGG | 0.676512 | 3.3:-78167813 | None:intergenic |
| TCGTAGCCAAAACAACATTG+GGG | 0.682214 | 3.3:+78168622 | MS.gene06780:CDS |
| TCACATGAAAATCCAAGTGG+CGG | 0.689481 | 3.3:+78168311 | MS.gene06780:CDS |
| GGACCAACTGACTTATGTGG+AGG | 0.690646 | 3.3:+78167356 | MS.gene06780:CDS |
| CCACCACTATGATTTGCATG+AGG | 0.697525 | 3.3:-78168425 | None:intergenic |
| TACCTATCTAGGTAGCAACA+TGG | 0.698196 | 3.3:+78167968 | MS.gene06780:CDS |
| ATCATGATATGGCCACACTG+AGG | 0.703504 | 3.3:-78167268 | None:intergenic |
| TGACATCGGCAGTGGCAGAG+AGG | 0.703505 | 3.3:-78167604 | None:intergenic |
| AGTGTGGCCATATCATGATG+TGG | 0.704165 | 3.3:+78167272 | MS.gene06780:CDS |
| ACATCGCCATGACTTACATG+CGG | 0.715191 | 3.3:-78167999 | None:intergenic |
| TCGCCATGACTTACATGCGG+CGG | 0.715340 | 3.3:-78167996 | None:intergenic |
| TATTCCCTAGAGGAAATTCG+GGG | 0.717198 | 3.3:+78167937 | MS.gene06780:CDS |
| ATTCCCTAGAGGAAATTCGG+GGG | 0.724819 | 3.3:+78167938 | MS.gene06780:CDS |
| GTGGTTCAAGACCCTCAGTG+TGG | 0.726788 | 3.3:+78167256 | MS.gene06780:CDS |
| ACATCAGATAAATATCTCAG+TGG | 0.729572 | 3.3:+78167897 | MS.gene06780:CDS |
| CCATCACATGAAAATCCAAG+TGG | 0.734016 | 3.3:+78168308 | MS.gene06780:CDS |
| CAATGTAGGCAACGACATGG+AGG | 0.748862 | 3.3:+78168493 | MS.gene06780:CDS |
| GAGCAAGTGAAAACCCTGTG+TGG | 0.775640 | 3.3:+78167201 | MS.gene06780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTTGTATTAGTTTTT+TGG | - | chr3.3:78167298-78167317 | None:intergenic | 10.0% |
| !!! | GAAAGTTTTGATAAAAATAT+TGG | + | chr3.3:78168155-78168174 | MS.gene06780:intron | 15.0% |
| !!! | TTGATTTTTACACAAAATTC+TGG | + | chr3.3:78168230-78168249 | MS.gene06780:intron | 20.0% |
| ! | AAACACAAATATGGTAGATT+TGG | + | chr3.3:78167665-78167684 | MS.gene06780:CDS | 25.0% |
| ! | AGTATGAAAAACAACTTGAT+TGG | + | chr3.3:78167501-78167520 | MS.gene06780:CDS | 25.0% |
| ! | GATAACAAAAATCATAGAGA+TGG | + | chr3.3:78168584-78168603 | MS.gene06780:CDS | 25.0% |
| ! | TAACAATATTTACAGCAACA+TGG | + | chr3.3:78167785-78167804 | MS.gene06780:CDS | 25.0% |
| !! | AATGACAATATGGTAGATTT+TGG | + | chr3.3:78167639-78167658 | MS.gene06780:CDS | 25.0% |
| !! | ATGACAATATGGTAGATTTT+GGG | + | chr3.3:78167640-78167659 | MS.gene06780:CDS | 25.0% |
| !! | ATGCATCAAATTTTAAACGA+AGG | + | chr3.3:78167453-78167472 | MS.gene06780:CDS | 25.0% |
| !! | ATTTTTACACAAAATTCTGG+AGG | + | chr3.3:78168233-78168252 | MS.gene06780:intron | 25.0% |
| !! | GTTAATCAAGAGAATTTTGA+AGG | + | chr3.3:78167756-78167775 | MS.gene06780:CDS | 25.0% |
| !! | TTCGTTATATTTGTTGATCT+TGG | - | chr3.3:78167412-78167431 | None:intergenic | 25.0% |
| !! | TTCGTTTAAAATTTGATGCA+TGG | - | chr3.3:78167454-78167473 | None:intergenic | 25.0% |
| !!! | GTTGATTTGTTATTTCATCA+AGG | + | chr3.3:78168545-78168564 | MS.gene06780:CDS | 25.0% |
| !!! | TTTTGGGATAAACACAAATA+TGG | + | chr3.3:78167656-78167675 | MS.gene06780:CDS | 25.0% |
| AAAATATTGGAAGCAACATG+TGG | + | chr3.3:78168168-78168187 | MS.gene06780:intron | 30.0% | |
| AAATCTTGATGAATATGGCA+TGG | + | chr3.3:78168646-78168665 | MS.gene06780:CDS | 30.0% | |
| AACTCTGTTGACAATAACAA+TGG | + | chr3.3:78168683-78168702 | MS.gene06780:CDS | 30.0% | |
| AATCTTGATGAATATGGCAT+GGG | + | chr3.3:78168647-78168666 | MS.gene06780:CDS | 30.0% | |
| ACATCAGATAAATATCTCAG+TGG | + | chr3.3:78167897-78167916 | MS.gene06780:CDS | 30.0% | |
| AGTACGATCAAGAAATATGA+CGG | + | chr3.3:78167335-78167354 | MS.gene06780:CDS | 30.0% | |
| ATAGAGATGGTGATAATATG+AGG | + | chr3.3:78168597-78168616 | MS.gene06780:CDS | 30.0% | |
| ATTCCTAATGTCGAAACAAT+AGG | + | chr3.3:78168347-78168366 | MS.gene06780:CDS | 30.0% | |
| GAAAGGATTGTTCACTAAAA+TGG | + | chr3.3:78167179-78167198 | MS.gene06780:CDS | 30.0% | |
| TAACAACACAGATAGCAAAA+TGG | + | chr3.3:78168394-78168413 | MS.gene06780:CDS | 30.0% | |
| ! | CACTGCCTTTTCAAAATAAT+CGG | - | chr3.3:78167565-78167584 | None:intergenic | 30.0% |
| ! | GAGGTTTTTATCATAACATG+TGG | + | chr3.3:78168054-78168073 | MS.gene06780:CDS | 30.0% |
| ! | TGCTTTAGACAATGACAATA+TGG | + | chr3.3:78167629-78167648 | MS.gene06780:CDS | 30.0% |
| ! | TTGCTACTAGAATTTTCATG+TGG | - | chr3.3:78168086-78168105 | None:intergenic | 30.0% |
| !! | TAACCTCTAAAACTAAACTG+AGG | - | chr3.3:78168125-78168144 | None:intergenic | 30.0% |
| !!! | GAGAACCGATTATTTTGAAA+AGG | + | chr3.3:78167557-78167576 | MS.gene06780:CDS | 30.0% |
| !!! | TTTCCTCAGTTTAGTTTTAG+AGG | + | chr3.3:78168119-78168138 | MS.gene06780:CDS | 30.0% |
| ACAATAGGTCAAGTAAGCTT+TGG | + | chr3.3:78168362-78168381 | MS.gene06780:CDS | 35.0% | |
| ACATTACATATCGCAACATG+TGG | + | chr3.3:78168282-78168301 | MS.gene06780:CDS | 35.0% | |
| ATCTTGATGAATATGGCATG+GGG | + | chr3.3:78168648-78168667 | MS.gene06780:CDS | 35.0% | |
| ATTCGTAGCCAAAACAACAT+TGG | + | chr3.3:78168620-78168639 | MS.gene06780:CDS | 35.0% | |
| ATTGTCAACAGAGTTTGCAT+TGG | - | chr3.3:78168678-78168697 | None:intergenic | 35.0% | |
| GATGATATGTTATTCCCTAG+AGG | + | chr3.3:78167927-78167946 | MS.gene06780:CDS | 35.0% | |
| GTTATTCCCTAGAGGAAATT+CGG | + | chr3.3:78167935-78167954 | MS.gene06780:CDS | 35.0% | |
| TGACCTATTGTTTCGACATT+AGG | - | chr3.3:78168353-78168372 | None:intergenic | 35.0% | |
| TTATTCCCTAGAGGAAATTC+GGG | + | chr3.3:78167936-78167955 | MS.gene06780:CDS | 35.0% | |
| TTCGTAGCCAAAACAACATT+GGG | + | chr3.3:78168621-78168640 | MS.gene06780:CDS | 35.0% | |
| TTTCATCAAGGCAATGTTGA+AGG | + | chr3.3:78168557-78168576 | MS.gene06780:CDS | 35.0% | |
| ! | ACAGGTTCTGATAACAATGT+AGG | + | chr3.3:78168479-78168498 | MS.gene06780:CDS | 35.0% |
| ! | AGTGGCATTTTCAATCAACT+TGG | - | chr3.3:78167130-78167149 | None:intergenic | 35.0% |
| ! | CTACTAGAATTTTCATGTGG+TGG | - | chr3.3:78168083-78168102 | None:intergenic | 35.0% |
| ! | TATATTTGTTGATCTTGGCG+AGG | - | chr3.3:78167407-78167426 | None:intergenic | 35.0% |
| ! | TTGTCTAAAGCACATGACAT+CGG | - | chr3.3:78167621-78167640 | None:intergenic | 35.0% |
| !! | GGAAGATTTTGATAGTAGCA+TGG | + | chr3.3:78167869-78167888 | MS.gene06780:CDS | 35.0% |
| !! | TTTTTGGCCACATCATGATA+TGG | - | chr3.3:78167282-78167301 | None:intergenic | 35.0% |
| !!! | AGTGATGGTTTTAATCCTAG+TGG | + | chr3.3:78167708-78167727 | MS.gene06780:CDS | 35.0% |
| !!! | GAAGCATGTGCAGTTTTATT+TGG | + | chr3.3:78167228-78167247 | MS.gene06780:CDS | 35.0% |
| AACGCATCAACATCACTACT+GGG | - | chr3.3:78168212-78168231 | None:intergenic | 40.0% | |
| ACATGCTTCAATACCACACA+GGG | - | chr3.3:78167217-78167236 | None:intergenic | 40.0% | |
| AGAGAGGGAGGTTTATTAAG+AGG | - | chr3.3:78167591-78167610 | None:intergenic | 40.0% | |
| CAAGCTGATCAAATGAGTGA+TGG | + | chr3.3:78167693-78167712 | MS.gene06780:CDS | 40.0% | |
| CCATCACATGAAAATCCAAG+TGG | + | chr3.3:78168308-78168327 | MS.gene06780:CDS | 40.0% | |
| CTGACTTATGTGGAGGAAAA+AGG | + | chr3.3:78167363-78167382 | MS.gene06780:CDS | 40.0% | |
| CTTCCTCAATGGAATTTCAC+AGG | + | chr3.3:78168461-78168480 | MS.gene06780:CDS | 40.0% | |
| GAACCTGTGAAATTCCATTG+AGG | - | chr3.3:78168467-78168486 | None:intergenic | 40.0% | |
| GGGGGAAATCTTGATGAATA+TGG | + | chr3.3:78168641-78168660 | MS.gene06780:CDS | 40.0% | |
| GTAGCGAATCTTTCTTTGAG+TGG | - | chr3.3:78167148-78167167 | None:intergenic | 40.0% | |
| TAACAATGTAGGCAACGACA+TGG | + | chr3.3:78168490-78168509 | MS.gene06780:CDS | 40.0% | |
| TACCTATCTAGGTAGCAACA+TGG | + | chr3.3:78167968-78167987 | MS.gene06780:CDS | 40.0% | |
| TATTCCCTAGAGGAAATTCG+GGG | + | chr3.3:78167937-78167956 | MS.gene06780:CDS | 40.0% | |
| TCACATGAAAATCCAAGTGG+CGG | + | chr3.3:78168311-78168330 | MS.gene06780:CDS | 40.0% | |
| TCACCTCATGCAAATCATAG+TGG | + | chr3.3:78168422-78168441 | MS.gene06780:CDS | 40.0% | |
| TCGTAGCCAAAACAACATTG+GGG | + | chr3.3:78168622-78168641 | MS.gene06780:CDS | 40.0% | |
| TTGATGCTTTGCTTCCTCAA+TGG | + | chr3.3:78168450-78168469 | MS.gene06780:CDS | 40.0% | |
| TTTCCTCCACATAAGTCAGT+TGG | - | chr3.3:78167362-78167381 | None:intergenic | 40.0% | |
| ! | ACTCATTTGATCAGCTTGCT+TGG | - | chr3.3:78167691-78167710 | None:intergenic | 40.0% |
| ! | ATACCGCCACACACATATTT+TGG | + | chr3.3:78167810-78167829 | MS.gene06780:CDS | 40.0% |
| ! | ATAGGTCAAGTAAGCTTTGG+AGG | + | chr3.3:78168365-78168384 | MS.gene06780:CDS | 40.0% |
| ! | CCACTTGGATTTTCATGTGA+TGG | - | chr3.3:78168311-78168330 | None:intergenic | 40.0% |
| ! | GGCATTTTCTCAAGGCAATA+TGG | + | chr3.3:78167848-78167867 | MS.gene06780:CDS | 40.0% |
| ! | GTTGATGTGGCATTTTCTCA+AGG | + | chr3.3:78167840-78167859 | MS.gene06780:CDS | 40.0% |
| ! | TTTAATCCTAGTGGTGGTGA+CGG | + | chr3.3:78167717-78167736 | MS.gene06780:CDS | 40.0% |
| !! | GATTTCCCCCAATGTTGTTT+TGG | - | chr3.3:78168631-78168650 | None:intergenic | 40.0% |
| !! | TTTCTTGATCGTACTGACTC+TGG | - | chr3.3:78167330-78167349 | None:intergenic | 40.0% |
| !!! | GATGGTTTTAATCCTAGTGG+TGG | + | chr3.3:78167711-78167730 | MS.gene06780:CDS | 40.0% |
| !!! | TGTGCAGTTTTATTTGGTCC+AGG | + | chr3.3:78167234-78167253 | MS.gene06780:CDS | 40.0% |
| AAACCTCCAAAATCGCCTTG+AGG | - | chr3.3:78168041-78168060 | None:intergenic | 45.0% | |
| ACATCGCCATGACTTACATG+CGG | - | chr3.3:78168002-78168021 | None:intergenic | 45.0% | |
| AGTGTGGCCATATCATGATG+TGG | + | chr3.3:78167272-78167291 | MS.gene06780:CDS | 45.0% | |
| ATCATGATATGGCCACACTG+AGG | - | chr3.3:78167271-78167290 | None:intergenic | 45.0% | |
| ATTCCCTAGAGGAAATTCGG+GGG | + | chr3.3:78167938-78167957 | MS.gene06780:CDS | 45.0% | |
| CAACGCATCAACATCACTAC+TGG | - | chr3.3:78168213-78168232 | None:intergenic | 45.0% | |
| CACATGCTTCAATACCACAC+AGG | - | chr3.3:78167218-78167237 | None:intergenic | 45.0% | |
| CCACCAAAATATGTGTGTGG+CGG | - | chr3.3:78167816-78167835 | None:intergenic | 45.0% | |
| CCACCACCAAAATATGTGTG+TGG | - | chr3.3:78167819-78167838 | None:intergenic | 45.0% | |
| CCTCATGCAAATCATAGTGG+TGG | + | chr3.3:78168425-78168444 | MS.gene06780:CDS | 45.0% | |
| CGTAGCCAAAACAACATTGG+GGG | + | chr3.3:78168623-78168642 | MS.gene06780:CDS | 45.0% | |
| CTCCATGTTGCTACCTAGAT+AGG | - | chr3.3:78167973-78167992 | None:intergenic | 45.0% | |
| GGAGGTCAATGCAACTTTGA+AGG | + | chr3.3:78168251-78168270 | MS.gene06780:intron | 45.0% | |
| GTAGATAACATGCCTCCTCA+AGG | + | chr3.3:78168023-78168042 | MS.gene06780:CDS | 45.0% | |
| TCATGATATGGCCACACTGA+GGG | - | chr3.3:78167270-78167289 | None:intergenic | 45.0% | |
| ! | CCACCACTATGATTTGCATG+AGG | - | chr3.3:78168428-78168447 | None:intergenic | 45.0% |
| ! | CTACTGGGATTTTCATGCGA+TGG | - | chr3.3:78168197-78168216 | None:intergenic | 45.0% |
| ! | GGGGGTTCTAATACCTATCT+AGG | + | chr3.3:78167957-78167976 | MS.gene06780:CDS | 45.0% |
| !!! | CCACACACATATTTTGGTGG+TGG | + | chr3.3:78167816-78167835 | MS.gene06780:CDS | 45.0% |
| !!! | GCAGTTTTATTTGGTCCAGG+TGG | + | chr3.3:78167237-78167256 | MS.gene06780:CDS | 45.0% |
| !!! | TTTTGGTGGTGGTGTTGATG+TGG | + | chr3.3:78167827-78167846 | MS.gene06780:CDS | 45.0% |
| AAAGCACATGACATCGGCAG+TGG | - | chr3.3:78167615-78167634 | None:intergenic | 50.0% | |
| AACATGTCAACACCGCCACT+TGG | - | chr3.3:78168326-78168345 | None:intergenic | 50.0% | |
| AACCCCCCGAATTTCCTCTA+GGG | - | chr3.3:78167944-78167963 | None:intergenic | 50.0% | |
| ATACCGCCGCATGTAAGTCA+TGG | + | chr3.3:78167993-78168012 | MS.gene06780:CDS | 50.0% | |
| CAATGTAGGCAACGACATGG+AGG | + | chr3.3:78168493-78168512 | MS.gene06780:CDS | 50.0% | |
| CGCTACGTGAACAGAGTGAA+AGG | + | chr3.3:78167162-78167181 | MS.gene06780:CDS | 50.0% | |
| GAGCAAGTGAAAACCCTGTG+TGG | + | chr3.3:78167201-78167220 | MS.gene06780:CDS | 50.0% | |
| TTCCCTAGAGGAAATTCGGG+GGG | + | chr3.3:78167939-78167958 | MS.gene06780:CDS | 50.0% | |
| ! | ATGCCTCCTCAAGGCGATTT+TGG | + | chr3.3:78168032-78168051 | MS.gene06780:CDS | 50.0% |
| ! | GACGGACCAACTGACTTATG+TGG | + | chr3.3:78167353-78167372 | MS.gene06780:CDS | 50.0% |
| ! | GGACCAACTGACTTATGTGG+AGG | + | chr3.3:78167356-78167375 | MS.gene06780:CDS | 50.0% |
| !! | CCGCCACACACATATTTTGG+TGG | + | chr3.3:78167813-78167832 | MS.gene06780:CDS | 50.0% |
| !! | GACATGGAGGTATCACTGCA+TGG | + | chr3.3:78168506-78168525 | MS.gene06780:CDS | 50.0% |
| !! | TGACGGTGTTGGTGCTATGT+TGG | + | chr3.3:78167734-78167753 | MS.gene06780:CDS | 50.0% |
| ACTGAGGGTCTTGAACCACC+TGG | - | chr3.3:78167255-78167274 | None:intergenic | 55.0% | |
| CCTCCAAAATCGCCTTGAGG+AGG | - | chr3.3:78168038-78168057 | None:intergenic | 55.0% | |
| GAACCCCCCGAATTTCCTCT+AGG | - | chr3.3:78167945-78167964 | None:intergenic | 55.0% | |
| GTGGTTCAAGACCCTCAGTG+TGG | + | chr3.3:78167256-78167275 | MS.gene06780:CDS | 55.0% | |
| TCGCCATGACTTACATGCGG+CGG | - | chr3.3:78167999-78168018 | None:intergenic | 55.0% | |
| ! | CCTCCTCAAGGCGATTTTGG+AGG | + | chr3.3:78168035-78168054 | MS.gene06780:CDS | 55.0% |
| CCAACACCGTCACCACCACT+AGG | - | chr3.3:78167726-78167745 | None:intergenic | 60.0% | |
| GACATCGGCAGTGGCAGAGA+GGG | - | chr3.3:78167606-78167625 | None:intergenic | 60.0% | |
| TGACATCGGCAGTGGCAGAG+AGG | - | chr3.3:78167607-78167626 | None:intergenic | 60.0% | |
| !! | CCTAGTGGTGGTGACGGTGT+TGG | + | chr3.3:78167723-78167742 | MS.gene06780:CDS | 60.0% |
| ATCGGCAGTGGCAGAGAGGG+AGG | - | chr3.3:78167603-78167622 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 78167096 | 78168721 | 78167096 | ID=MS.gene06780 |
| chr3.3 | mRNA | 78167096 | 78168721 | 78167096 | ID=MS.gene06780.t1;Parent=MS.gene06780 |
| chr3.3 | exon | 78167096 | 78168140 | 78167096 | ID=MS.gene06780.t1.exon1;Parent=MS.gene06780.t1 |
| chr3.3 | CDS | 78167096 | 78168140 | 78167096 | ID=cds.MS.gene06780.t1;Parent=MS.gene06780.t1 |
| chr3.3 | exon | 78168255 | 78168721 | 78168255 | ID=MS.gene06780.t1.exon2;Parent=MS.gene06780.t1 |
| chr3.3 | CDS | 78168255 | 78168721 | 78168255 | ID=cds.MS.gene06780.t1;Parent=MS.gene06780.t1 |
| Gene Sequence |
| Protein sequence |
