AlfalfaGEDB | MS.gene067947

M. sativa cultivar XinJiangDaYe / MS.gene067947

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0046983
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067947.t1	XP_013446167.2	95.5	292	13	0	15	306	1	292	5.00E-148	533.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067947.t1	Q9T072	38.8	188	112	2	111	296	135	321	2.0e-28	127.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067947.t1	A0A072TRP6	94.4	268	15	0	15	282	1	268	7.3e-133	483.0

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene067947.t1	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067947.t1	MTR_8g069740	94.403	268	15	0	15	282	1	268	0.0	517
MS.gene067947.t1	MTR_2g104650	79.592	294	42	2	15	308	1	276	1.04e-158	444
MS.gene067947.t1	MTR_2g104590	61.824	296	49	3	14	309	1	232	2.02e-117	338
MS.gene067947.t1	MTR_2g104620	54.018	224	48	4	15	238	1	169	1.51e-59	188
MS.gene067947.t1	MTR_2g104550	38.125	320	166	9	3	300	2	311	2.39e-53	177
MS.gene067947.t1	MTR_4g009540	37.685	337	166	11	1	300	1	330	1.10e-51	173
MS.gene067947.t1	MTR_2g104490	37.931	319	163	12	1	298	1	305	3.14e-49	166
MS.gene067947.t1	MTR_8g009020	41.935	248	124	7	71	300	77	322	2.41e-48	164
MS.gene067947.t1	MTR_5g014520	46.907	194	96	4	111	303	144	331	6.40e-46	158
MS.gene067947.t1	MTR_4g009110	34.551	356	170	12	1	300	1	349	2.66e-44	154

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067947.t1	AT4G37850	38.830	188	112	2	111	296	135	321	1.24e-37	136
MS.gene067947.t1	AT4G37850	38.830	188	112	2	111	296	135	321	1.24e-37	136
MS.gene067947.t1	AT2G22750	44.134	179	98	1	119	295	119	297	3.42e-37	135
MS.gene067947.t1	AT2G22750	44.134	179	98	1	119	295	147	325	6.37e-37	135
MS.gene067947.t1	AT2G22750	44.134	179	98	1	119	295	143	321	6.57e-37	134
MS.gene067947.t1	AT2G22750	44.134	179	97	2	119	295	119	296	1.28e-35	130
MS.gene067947.t1	AT2G22750	44.134	179	97	2	119	295	147	324	1.77e-35	131
MS.gene067947.t1	AT2G22760	35.644	202	110	8	108	301	106	295	5.64e-31	118
MS.gene067947.t1	AT2G22770	35.870	184	105	3	126	296	132	315	3.82e-30	116
MS.gene067947.t1	AT2G22760	35.000	180	99	6	108	280	106	274	4.19e-26	105

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Find 68 sgRNAs with CRISPR-Local

Find 275 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGGAGGAGAATCCATGG+GGG	0.828261	8.3:-33174909	MS.gene067947:CDS
AACTTGAAGAACGTGTGAAA+GGG	0.515188	8.3:-33169833	MS.gene067947:CDS
AAGAAAGATCATAGAACTTT+CGG	0.343414	8.3:-33174333	MS.gene067947:CDS
AAGAAATGGAGGAGAATCCA+TGG	0.566331	8.3:-33174912	None:intergenic
AATATAGAATTTGTTGGTAT+CGG	0.477242	8.3:+33174524	None:intergenic
AATGGCTTTGTAGATTGATA+AGG	0.402893	8.3:-33169892	MS.gene067947:intron
ACATAATGTCAGAGAGGAAT+AGG	0.386492	8.3:-33174370	MS.gene067947:CDS
ACGACAAAGGCAAAGAATCA+TGG	0.539001	8.3:+33174456	None:intergenic
ACTACCAATGTCTTGCCATT+TGG	0.326554	8.3:-33169558	MS.gene067947:CDS
ACTAGGCCAGTTGTGGCAAT+AGG	0.371153	8.3:+33174614	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATATATATGTAGCGGTGT+CGG	-	chr8.3:33173798-33173817	MS.gene067947:intron	30.0%
AAATCTCTTAGAGATTAGGT+CGG	+	chr8.3:33172113-33172132	None:intergenic	30.0%
AAGTTAAAAACAGTCCTCTT+GGG	+	chr8.3:33171522-33171541	None:intergenic	30.0%
AGCTAAATCTCTTAGAGATT+AGG	+	chr8.3:33172117-33172136	None:intergenic	30.0%
AGTGAAAAAACTAAGAGAAG+TGG	-	chr8.3:33174872-33174891	MS.gene067947:intron	30.0%
ATAAAAATATCGATCCCAAG+AGG	-	chr8.3:33171505-33171524	MS.gene067947:intron	30.0%
CCATTATGCGCATAAAATTA+AGG	-	chr8.3:33173557-33173576	MS.gene067947:intron	30.0%
CTTCTTTAATCCAGGTATAA+AGG	+	chr8.3:33169497-33169516	None:intergenic	30.0%
CTTTATACCTGGATTAAAGA+AGG	-	chr8.3:33169495-33169514	MS.gene067947:intron	30.0%
GAAGCAATATTGATCAATGA+GGG	-	chr8.3:33169790-33169809	MS.gene067947:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	33168897	33174929	33168897	ID=MS.gene067947
chr8.3	mRNA	33168897	33174929	33168897	ID=MS.gene067947.t1;Parent=MS.gene067947
chr8.3	exon	33174891	33174929	33174891	ID=MS.gene067947.t1.exon1;Parent=MS.gene067947.t1
chr8.3	CDS	33174891	33174929	33174891	ID=cds.MS.gene067947.t1;Parent=MS.gene067947.t1
chr8.3	exon	33174310	33174732	33174310	ID=MS.gene067947.t1.exon2;Parent=MS.gene067947.t1
chr8.3	CDS	33174310	33174732	33174310	ID=cds.MS.gene067947.t1;Parent=MS.gene067947.t1
chr8.3	exon	33169527	33169901	33169527	ID=MS.gene067947.t1.exon3;Parent=MS.gene067947.t1
chr8.3	CDS	33169527	33169901	33169527	ID=cds.MS.gene067947.t1;Parent=MS.gene067947.t1
chr8.3	exon	33168897	33168989	33168897	ID=MS.gene067947.t1.exon4;Parent=MS.gene067947.t1
chr8.3	CDS	33168897	33168989	33168897	ID=cds.MS.gene067947.t1;Parent=MS.gene067947.t1

Gene Sequence

>MS.gene067947

ATGGAGGAGAATCCATGGGGGAATTGGTCTTACGATTTGGTAATACAATAACAAGTCATATTATACATTGAATATTTATTTTCTTAATTGAAATGTGATGATATTTTATGTGTATATAGATCATTGTATGAACTCCTCCACTAACTATAAAAACTACCACTTGATTAATTATTGTTTTACAAATGAATCGTTTTTAGGAAATGGAAGAATGTTTGTGTCACACCAACAACATATTTGATGAAGATTTCCTTAGAGATATCCTGTATCAGACACCACAAGATCAATTCAGTGTCCCTATTGCCACAACTGGCCTAGTCAACAACTCATCCATCAAGGTGTCACATTCAACTCAACATGCTGAAGAAAAACCAGCCAACTCATTACCGATACCAACAAATTCTATATTGTCTCTTGACGAATCTGTTACATTGTTACCACCAACTGAGCAACACCATGATTCTTTGCCTTTGTCGTCATCAACGGCTAGCCAAGGGTCAAATTCGAAGAAGCCTAGAAGCGCTTCTGAGACACTAGATCACATAATGTCAGAGAGGAATAGGAGACAGCTACTTACAAGAAAGATCATAGAACTTTCGGCCTTTATACCTGGATTAAAGAAGGTGAGTCTGTAATATATTAAATTAAACCTGGACAAATGAGTAAATTTTTATAGTAGTTATCATCTACGAAGCACGGACATCTCTAGGATTAGACATGTCGTGGTGTCAGACATATGTCGGACCTACTTAGACCGGTGTCCCAAAAATTTGTTTTTTTCTTTGTTTTGACACTCATTGAATTGGTGTTCGACACAAATTCGGACAAGTATCCCTTTATTTTTTTCCTTTGCTTCGACATAGCTTGGGCACATATCTACAAGATTAAAATGTGTGGAAGCAATATTGATCAATGAGGGCGGTTAAAAAAAGGTCAACATTTTAATCTTTTTGCTAGTTGATGGATAAAAAAGGTCAAATTCTATCCAATCTTGTTTTAGAACTTTGTAAAGAAAGAAATTGCTCAATTTAGATGCACATGTATATATTGATACTCGATTTAGATCTATTATGAATAACTAGTAAAGGACTCATGCTTTCGCACGAGTCACGTAACATTGATTTAATTATGTAAAAAATAATTAGATCGTTAATTTTGTTGAATCTTTAAATATATTCAATGAAAATTATCAGTATTAATATAATGTTTCTACTAAAAAATTTCTCTTATATACAAAAAAATATGTTAAATATTTGAATCGTGTTTGATGTGGATTTTATTTGCTTATATATGCGAAAATAAATTTAAGTAGTATAGTGTTTCTATATGCAAAACACCGTTCAATGTTTGCATCGCATCTGTTGCAGATTTTACTTGTTTATATATGAATAAACAAAATTTTATTAATATAATGTTTCTACTAAAAAAAATTCTCTTATATACAAAAAAATATGTTAAATATTTGAATCGTGTTTGATGTGGATTTTATTTGCTTATATATGCGAAAATAAATTTAAGTAGTATAGTGTTTCTATATGCAAAACACCGTTCAATGTTTGCATCGCATCTGTTGCAGATTTTACTTGTTTATATATGAATAAACAAAATTTTATTTAGATAGATGAGAAAGCTCATATGATAAAATTTTGGAAACTAGTAACTATTTTCAAAATATAAACATTAATATAGTGCTTCTATTAAATAACTTTTTATTTTATATGCAAATCACTATTCAATGTTTGCACTACTTTCGTTGCATATTTTATGTGCTTATATATGCAGAAACAAATTCTTATATGCATATATTAGAAAGTCGATATAATAAAATTTTGGAAACTCATGACTATTTTCAAATTATCAACATTAATGTAGTGTTTATATTAAATAACTTTTTATTTTATATTAAAAACACTTGCACCACACTTATTGAGGAATATATATGCTTATATATATAGAAGCAATTTTTTATGTACCGCTATAAGATAGTCAATATGATAAAAAAATTTAAAAACTCGTCACTATATCAAAATATCAACATTAATGTAGTGTTTCTATTAAAAATATCGTCAATACAAAACACTGTTAAGTATTTTCACTGCACTCATTGCAGATTTTATGTACTTATATCTCCAAAATCAAATTTTATGTATATCGATATGAGAAAGTTTTTTGTTGAGCATCCGATATGAGAAAGTTTTTTTTCTTCTTTTTTTTAGAGATTTTGAAAACTAATGATTATTTTATAAATATCAATATTAATGTAGTGTTTCTATTAAATTTCTTTAAAGGAAAATTAATAAGATAAAAAGATTAAAAAAGATGAGAATAAATTTTTTCCCTATATTTATGTTATAATACATTGTTTTTTCTTATTATTTAATAGAAAATTGATCATGAAGCATAAGAAATTAGTGATATAGGGAATTAGTTTAACCAAGGATAACTATGAAATTTTGCTGGCGTATGATTTTCTTTTAGTAGTAGTAAATAAAAGGGAATAAGATAAGAAATAAAAAGAAAGAGGAAACAAATTGAGTTTTTTTATTTGCACTACAAGTTTAGGCTTGGTTCTGATAGATCTCTGGCAAGTGCACCAAATACTATCGAAGTAATAAAAATATCGATCCCAAGAGGACTGTTTTTAACTTCAATAATTCAATCGCGTTATAAAAATAGGATGTATAAAAGTTTATTTTTGTTTGCCACTAGGCAGCAGATTGGGTTTGATTTTATGAAATCAAATAAAAGAATAAGATTTGATTAAGAAATTATGGAGAGAGATGAGATCAGGTCTTCGAATCCTCTATGTTTCCCCTAATTGGTTACTGCACCTATTGTTACTAATGATTTTCTAGTTTCACGATAGTTAACAAATTAGCCCTAATCAATCCCTTGAGTTAGGACCCTCTTCTTAAACTACAGCCCCTAATTCCTTAGGTGGTCTAATAATCCTTGAAGGTTTTATGAACGTTAACCTAATATCACTAACAAACGATTATCCATTCCTAGACTAACCATGTTTATTAGAACAATTCAATTAGGTCTAAGTCGAAAGCTATGGTCAGTAGTCATTCGATCTCACAAAATCATGTTTATATTTGATCAGGATATAAAAAGCATTAAGAACAATTGAATTGAATAAAGACTAGAAATTCATTAATAAACAATAGAGTTTCACAGCAACATAATATCAATTAGGGTTACATAGGTTCATCTCCGACCTAATCTCTAAGAGATTTAGCTACTCATAATTGAGTTTACAAATAGCATAATCAATGAAAGAATTAAAACATACATAAACTGGGTTAGAGATGATGAAATCCTCGCCGCTGCAGCCTTCTGGGTGTTAAAATCGCACTTTAGCTCTCCAAAATCGTAATCCCTATGTTTGAGAGTGACTTCAGCTTAAATAGGCAACTTCTGGATCGCCCAAAATCGCACCACGATTTAGAAATCGTACCACGATGGCCTCTTTGAACCCTAATTTCCTTTAAAGCCCTTCTTGAAATCGTATCACGATGGTATGGATCGTATTGCGATCCAACTCCTCAAAAAACATGCTCTCTGACTTCAAGAAATCGTATTGCGATTAGCAAATCGCAGTATGATTGGCTTCTTCCAGTTCTTCCATATTTGATGCTTTTAACTGCTCCTGGACACTTAATGTTGCTTAGAACTCTATCAAAATGTCAAAATAAGTCCTAAAAATTACGTAATGACAGCATGTCATCAGGTTCCTTCAAAAAAAAAGTTTAGGCTAGGCTTGAAAGTGATAAACAAAAAAGAAAGTTAAACTAAACTAACAAATTGGCTCATTATGTGGAATTAGCTAGACTTTTGTGTAAAATTGGAAACAAACTTGTCAATAATTAAAATGATAATAAATTGTTTTTTTTTTTCAAAAATATAGGGGATGTAGTTAAGCTTGGAAATGATAAAGCCAAAAAAAAATATTTAAAACGAATAAATTAGTTTTAAATATTTTACAAATGTTCATTAGGCATATAAAATCAAGATGATCATGGATATAAAAACAATTATCAAATTTCACTGGAGTAAGATTTTTATAAATCGTTAGTAGATTAATTTTTTTTTAAAAAAAACAAGTAAATTAGTTCCATAGTTATCCGTGGAAATTGGTTACACGTGTGATGACCATTATTCATAATTAATTTTTTAAGACAAATTAATTTAATATTGCAAAATGATTGTTATCCGTTGCGCACATAAAATTAAGGAGATCATACTTTAAAAAGGACGATTATCAAATTTTGTTGGACTTCGATTTTTATATATTAATTTTTTTTACAGAAAAAATTGGTTACATTTGTGATGACCATTATCCATAATTAATTTTTAAAAAACAAATAAATTAGTTCCATAATTACCCGTGGAATTTGGTTACACTGTGATGAACATTAACTGTAATTCATTTTTTAAAAAACAAATAAATTAAATTTTGTAAAATGACCGTTATGCGCATAAAATTAAGGAGATTATGAGTTTTAAAAAATACAATTATGAAATTTGGCTGGACTTCGATTTTTATATATTGTTAGTAAATTCCATAATTACCCGTGAAATTTGGTTTTGGTTACACTGTGATGACCATTAACTATAATTCATTTTTTAAAAAATAAATAAATTAAATTTTGTAAAATGACCATTATGCGCATAAAATTAAGGAGATCATGGGTTTTAAAAAATACAATTATGAAATTTTGTTGGACTTCGATTTTTATATATTGTTAGTAAATAAATTAAATTTTGTAAAATGATTGTTATGAGCATAAAATTAAGGAGATCATGGGTTTTAAAAAGAACGATTATGAAATTTTGCTAGACTTCGATTTTTATATATTGTTAGTAGATACTAATATTTGATTTAATTATAATAAACTAATAAATATATATGTAGCGGTGTCGGTGTCCTATGTTTATTATATTAGTGGTGTCGTCATGTCGGAGTCCATGCTCCATAGATTATCATTGGATAGAAGCTACAATAAAAATTATCTAATGGCTTTGTAGATTGATAAGGTTCATGTGGTAACGGAAGCTATCAATTATGTGAAACAACTTGAAGAACGTGTGAAAGGGCTAGAAGAAGACATCAAGAAGAAAGACACAGGATCAGTGAGCACCATAACAAGATCCCATATCCTAATTGACAAAGACACTGCAATTGGTGAAATGAAAACTGAAGAATGTTACGGGCGAAATGAATCACTTGTAGAGGTTGAAGCTAGGGTTCTAGGGAATGAAGTGTTAATCAAGATTCATTGTGGCATGCAAGAGGGGATTGTGGTCAATATAATGTCCCAGCTTCAACTTCTTCATCTCTCCATAACAACTACCAATGTCTTGCCATTTGGAAATACTCTTGATATCGCCATTATTGCTCAGGCAAGTAATTACCAGTGTGTGTGTACACACACACACTTGTTTTTTAGAATAAGTATTCTAACAAAGATATAATTAAAAAGTCGTTGAATACACCTTGAGGCGCAGGTTGCTAAAACACTCATTTTGAAAAACGAGTGGGTGTAAGTTAACAACTCCTACAAATATTTGCTAGAGCACACCTAGTTATATTTTAGAAGGAGTATTTTAGCATGCGATAACTAAAAAATTGCCCTAAGAATGTATGTTGCTAAAATACATATTCATAAAAACAAGTGGGTGTATCCTAGCAAATCTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTATATTTTCAAGCAAGAAAATTAAGAAGCATGATTCCAACTCAAGTTTGATTCTTATCCAAATTTAATTATTATAACCCTGTCTGTAACATATATTATAATTGATGTTTATATTTGTGTTTAAATTTTTGTAATTGATTCTACAGATGGGTAACAAATACAACTTGACAGTGAAGGATCTAGTGAAAAAACTAAGAGAAGTGGCTATGTTGCAAGCATGTGATGATGTGCAACAATGA

Protein sequence

>MS.gene067947.t1

MEENPWGNWSYDLEMEECLCHTNNIFDEDFLRDILYQTPQDQFSVPIATTGLVNNSSIKVSHSTQHAEEKPANSLPIPTNSILSLDESVTLLPPTEQHHDSLPLSSSTASQGSNSKKPRSASETLDHIMSERNRRQLLTRKIIELSAFIPGLKKIDKVHVVTEAINYVKQLEERVKGLEEDIKKKDTGSVSTITRSHILIDKDTAIGEMKTEECYGRNESLVEVEARVLGNEVLIKIHCGMQEGIVVNIMSQLQLLHLSITTTNVLPFGNTLDIAIIAQMGNKYNLTVKDLVKKLREVAMLQACDDVQQ