Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068098.t1 | RHN47671.1 | 87.9 | 280 | 27 | 4 | 12 | 287 | 1 | 277 | 3.50E-127 | 464.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068098.t1 | Q39262 | 35.4 | 113 | 55 | 2 | 70 | 182 | 51 | 145 | 4.0e-07 | 57.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068098.t1 | A0A396H587 | 87.9 | 280 | 27 | 4 | 12 | 287 | 1 | 277 | 2.5e-127 | 464.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene068098.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068098.t1 | MTR_3g012010 | 28.767 | 219 | 136 | 7 | 78 | 287 | 98 | 305 | 1.99e-14 | 72.4 |
| MS.gene068098.t1 | MTR_2g067740 | 40.816 | 98 | 51 | 4 | 78 | 168 | 59 | 156 | 4.65e-14 | 70.1 |
| MS.gene068098.t1 | MTR_8g466760 | 28.814 | 236 | 106 | 12 | 78 | 287 | 98 | 297 | 1.45e-13 | 70.1 |
| MS.gene068098.t1 | MTR_3g009410 | 27.948 | 229 | 125 | 8 | 78 | 287 | 98 | 305 | 6.13e-12 | 65.5 |
| MS.gene068098.t1 | MTR_7g026977 | 44.286 | 70 | 29 | 2 | 78 | 137 | 148 | 217 | 7.83e-12 | 65.5 |
| MS.gene068098.t1 | MTR_5g008280 | 40.449 | 89 | 35 | 3 | 77 | 157 | 45 | 123 | 8.45e-12 | 65.5 |
| MS.gene068098.t1 | MTR_3g011990 | 28.899 | 218 | 128 | 9 | 78 | 287 | 98 | 296 | 1.26e-11 | 64.3 |
| MS.gene068098.t1 | MTR_1g013130 | 36.885 | 122 | 66 | 3 | 61 | 182 | 83 | 193 | 9.71e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068098.t1 | AT5G25160 | 38.053 | 113 | 52 | 3 | 70 | 182 | 51 | 145 | 2.21e-11 | 62.8 |
Find 99 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTTGGGATGAATAATTTA+TGG | 0.162779 | 7.3:+20710416 | MS.gene068098:CDS |
| TCCCTTGCAACATCACAATT+TGG | 0.176085 | 7.3:+20710400 | MS.gene068098:CDS |
| TGAACAATTCCTTGCCTTCT+TGG | 0.192209 | 7.3:+20710287 | MS.gene068098:CDS |
| TGGCTTGGTGGTTCATCTTC+TGG | 0.227050 | 7.3:+20710307 | MS.gene068098:CDS |
| CGTGATGCAGGAGGTGTATT+TGG | 0.246247 | 7.3:-20710352 | None:intergenic |
| TCAGAAGATGCCTCAGAAAT+TGG | 0.265731 | 7.3:-20710526 | None:intergenic |
| CCCACAGTGTTTGATCTTTG+TGG | 0.295932 | 7.3:-20710469 | None:intergenic |
| CTGTCATCTTCATCTTCAAT+AGG | 0.321326 | 7.3:-20710592 | None:intergenic |
| TTGGAGAATGGTGAGCATTC+AGG | 0.322095 | 7.3:+20709965 | MS.gene068098:CDS |
| AATTCCTTGCCTTCTTGGCT+TGG | 0.353374 | 7.3:+20710292 | MS.gene068098:CDS |
| GAGGTTGGTGGTGATGTCTT+TGG | 0.357363 | 7.3:-20709875 | None:intergenic |
| ATTTGGGATGAATAATTTAT+GGG | 0.357825 | 7.3:+20710417 | MS.gene068098:CDS |
| TCCTTGCCTTCTTGGCTTGG+TGG | 0.368207 | 7.3:+20710295 | MS.gene068098:CDS |
| CTCACCATTCTCCAAGGGTT+TGG | 0.371444 | 7.3:-20709957 | None:intergenic |
| CCCTTGCAACATCACAATTT+GGG | 0.371646 | 7.3:+20710401 | MS.gene068098:CDS |
| TTCACTTGCGGCGCAGGTGG+AGG | 0.390432 | 7.3:-20710013 | None:intergenic |
| AAGATCAAACACTGTGGGTT+TGG | 0.398899 | 7.3:+20710474 | MS.gene068098:CDS |
| GGTTCATCTTCTGGTGGCTA+TGG | 0.403832 | 7.3:+20710316 | MS.gene068098:CDS |
| TGTTCACATGGGAACCAATT+GGG | 0.426738 | 7.3:-20710270 | None:intergenic |
| TTCCCCACTTCTCAAGCGCT+TGG | 0.427846 | 7.3:+20710067 | MS.gene068098:CDS |
| AAGTTCAGTTCCTCCTCGTT+GGG | 0.429271 | 7.3:-20710628 | None:intergenic |
| GGATATTAGATCGATACCTT+AGG | 0.431642 | 7.3:-20710171 | None:intergenic |
| GCGCAAAATGATGGAGGATT+CGG | 0.431644 | 7.3:+20709826 | MS.gene068098:CDS |
| AATTCCTTCACTTGCGGCGC+AGG | 0.435850 | 7.3:-20710019 | None:intergenic |
| CAAGTTCAGTTCCTCCTCGT+TGG | 0.438454 | 7.3:-20710629 | None:intergenic |
| TCCTTCACTTGCGGCGCAGG+TGG | 0.438683 | 7.3:-20710016 | None:intergenic |
| TTGTTCACATGGGAACCAAT+TGG | 0.439864 | 7.3:-20710271 | None:intergenic |
| GGAGAGCTTGAAAATTGATA+AGG | 0.446609 | 7.3:-20710202 | None:intergenic |
| CAACGAGGAGGAACTGAACT+TGG | 0.447556 | 7.3:+20710630 | MS.gene068098:CDS |
| AATTTCTGAGGCATCTTCTG+AGG | 0.448060 | 7.3:+20710528 | MS.gene068098:CDS |
| GATTTCTTGACCTTGAGGCT+TGG | 0.452474 | 7.3:+20709914 | MS.gene068098:CDS |
| GCTCACGCTTATGAGCGTTT+TGG | 0.454295 | 7.3:-20710096 | None:intergenic |
| TTCTTGACCTTGAGGCTTGG+CGG | 0.462476 | 7.3:+20709917 | MS.gene068098:CDS |
| CCCACTTCTCAAGCGCTTGG+AGG | 0.464114 | 7.3:+20710070 | MS.gene068098:CDS |
| TCATCTTCTGGTGGCTATGG+AGG | 0.469395 | 7.3:+20710319 | MS.gene068098:CDS |
| CCAACCTCTGGATCGGATGC+TGG | 0.471452 | 7.3:+20709890 | MS.gene068098:CDS |
| ATTCTCCAAGGGTTTGGAAG+TGG | 0.473353 | 7.3:-20709951 | None:intergenic |
| GAGAGCTTGAAAATTGATAA+GGG | 0.474183 | 7.3:-20710201 | None:intergenic |
| AAACCTCAAGCGCAAAATGA+TGG | 0.477017 | 7.3:+20709817 | MS.gene068098:CDS |
| CTTGAAAATTGATAAGGGTA+TGG | 0.487010 | 7.3:-20710196 | None:intergenic |
| GGCATCACAAATCGTGATGC+AGG | 0.491997 | 7.3:-20710364 | None:intergenic |
| TTCGGAGCAAGAGTCGAAAT+CGG | 0.492293 | 7.3:+20709844 | MS.gene068098:CDS |
| GTGTTTGATCTTTGTGGAGT+TGG | 0.498368 | 7.3:-20710463 | None:intergenic |
| AAGACATCACCACCAACCTC+TGG | 0.499816 | 7.3:+20709878 | MS.gene068098:CDS |
| GCTAGCCTGTCCAACCCAAT+TGG | 0.500395 | 7.3:+20710256 | MS.gene068098:CDS |
| TTCTCCAAGGGTTTGGAAGT+GGG | 0.501108 | 7.3:-20709950 | None:intergenic |
| GATATTAGATCGATACCTTA+GGG | 0.503430 | 7.3:-20710170 | None:intergenic |
| CATCTTCTGGTGGCTATGGA+GGG | 0.505349 | 7.3:+20710320 | MS.gene068098:CDS |
| GGGAACCAATTGGGTTGGAC+AGG | 0.508826 | 7.3:-20710261 | None:intergenic |
| ACTTCCAAACCCTTGGAGAA+TGG | 0.510882 | 7.3:+20709953 | MS.gene068098:CDS |
| ATTTCTGAGGCATCTTCTGA+GGG | 0.511868 | 7.3:+20710529 | MS.gene068098:CDS |
| TCCTCCAAGCGCTTGAGAAG+TGG | 0.512717 | 7.3:-20710071 | None:intergenic |
| GATGAACCACCAAGCCAAGA+AGG | 0.518609 | 7.3:-20710301 | None:intergenic |
| CACATGGGAACCAATTGGGT+TGG | 0.519779 | 7.3:-20710266 | None:intergenic |
| GCAAGAGTCGAAATCGGAGA+AGG | 0.519914 | 7.3:+20709850 | MS.gene068098:CDS |
| AAATCCCACTTCCAAACCCT+TGG | 0.521354 | 7.3:+20709946 | MS.gene068098:CDS |
| TCCCAAATTGTGATGTTGCA+AGG | 0.525406 | 7.3:-20710402 | None:intergenic |
| AAAATTGATAAGGGTATGGA+AGG | 0.527390 | 7.3:-20710192 | None:intergenic |
| GAAGATGCCTCAGAAATTGG+AGG | 0.529710 | 7.3:-20710523 | None:intergenic |
| CTGGCGATTTCTTGACCTTG+AGG | 0.533323 | 7.3:+20709909 | MS.gene068098:CDS |
| TCCACCTGCGCCGCAAGTGA+AGG | 0.535880 | 7.3:+20710015 | MS.gene068098:CDS |
| TTGACCTTGAGGCTTGGCGG+TGG | 0.537816 | 7.3:+20709920 | MS.gene068098:CDS |
| CCTCCAAGCGCTTGAGAAGT+GGG | 0.545861 | 7.3:-20710070 | None:intergenic |
| TACGGAAATATGAATACCCT+TGG | 0.547864 | 7.3:-20710231 | None:intergenic |
| ATGAATAATTTATGGGGTGG+AGG | 0.548808 | 7.3:+20710424 | MS.gene068098:CDS |
| GGGATGAATAATTTATGGGG+TGG | 0.553703 | 7.3:+20710421 | MS.gene068098:CDS |
| CTTGGTGGTTCATCTTCTGG+TGG | 0.555595 | 7.3:+20710310 | MS.gene068098:CDS |
| AATGGAAGAACAAAGGAGAG+AGG | 0.557192 | 7.3:+20710132 | MS.gene068098:CDS |
| TATGAATACCCTTGGTAGTG+TGG | 0.561783 | 7.3:-20710223 | None:intergenic |
| TGAATGCTCACCATTCTCCA+AGG | 0.576662 | 7.3:-20709963 | None:intergenic |
| ACCACCAAGCCAAGAAGGCA+AGG | 0.577515 | 7.3:-20710296 | None:intergenic |
| ATGTGATCGATTCAGCCCTA+AGG | 0.581100 | 7.3:+20710155 | MS.gene068098:CDS |
| CAAGCTCTCCACACTACCAA+GGG | 0.581296 | 7.3:+20710215 | MS.gene068098:CDS |
| CAAGAGAATTCCTTCACTTG+CGG | 0.584375 | 7.3:-20710025 | None:intergenic |
| ATCACCACCAACCTCTGGAT+CGG | 0.589780 | 7.3:+20709883 | MS.gene068098:CDS |
| GAATGCTCACCATTCTCCAA+GGG | 0.590384 | 7.3:-20709962 | None:intergenic |
| CCAGCATCCGATCCAGAGGT+TGG | 0.592460 | 7.3:-20709890 | None:intergenic |
| CCCAAATTGTGATGTTGCAA+GGG | 0.596255 | 7.3:-20710401 | None:intergenic |
| TCAAGCTCTCCACACTACCA+AGG | 0.596295 | 7.3:+20710214 | MS.gene068098:CDS |
| TTTGGGATGAATAATTTATG+GGG | 0.599177 | 7.3:+20710418 | MS.gene068098:CDS |
| TGTGCCACCGCCAAGCCTCA+AGG | 0.601323 | 7.3:-20709924 | None:intergenic |
| AAGATGCCTCAGAAATTGGA+GGG | 0.602431 | 7.3:-20710522 | None:intergenic |
| GCATCCGATCCAGAGGTTGG+TGG | 0.602933 | 7.3:-20709887 | None:intergenic |
| AAGGCAAGGAATTGTTCACA+TGG | 0.612872 | 7.3:-20710282 | None:intergenic |
| AGATGAAGATGACAGAAATG+AGG | 0.616572 | 7.3:+20710600 | MS.gene068098:CDS |
| GGTTGGACAGGCTAGCACTA+CGG | 0.617508 | 7.3:-20710249 | None:intergenic |
| ATCGCCAGCATCCGATCCAG+AGG | 0.630563 | 7.3:-20709894 | None:intergenic |
| CCACAAAGATCAAACACTGT+GGG | 0.631128 | 7.3:+20710469 | MS.gene068098:CDS |
| CTCCAAGCGCTTGAGAAGTG+GGG | 0.636012 | 7.3:-20710069 | None:intergenic |
| TCAAACCCCTCCAATTTCTG+AGG | 0.642241 | 7.3:+20710516 | MS.gene068098:CDS |
| AGATGCCTCAGAAATTGGAG+GGG | 0.652285 | 7.3:-20710521 | None:intergenic |
| CCTCAAGCGCAAAATGATGG+AGG | 0.656497 | 7.3:+20709820 | MS.gene068098:CDS |
| ATCACAAATCGTGATGCAGG+AGG | 0.664503 | 7.3:-20710361 | None:intergenic |
| GCAAGGGATGAATTTGACAA+TGG | 0.667223 | 7.3:-20710385 | None:intergenic |
| TCTTCAATAGGATCATGAGA+AGG | 0.673021 | 7.3:-20710580 | None:intergenic |
| TGAGGCTAATCCCAACGAGG+AGG | 0.704293 | 7.3:+20710618 | MS.gene068098:CDS |
| AGGCAAGGAATTGTTCACAT+GGG | 0.705162 | 7.3:-20710281 | None:intergenic |
| TCCACAAAGATCAAACACTG+TGG | 0.713784 | 7.3:+20710468 | MS.gene068098:CDS |
| AAATGAGGCTAATCCCAACG+AGG | 0.808131 | 7.3:+20710615 | MS.gene068098:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTGGGATGAATAATTTA+TGG | + | chr7.3:20710416-20710435 | MS.gene068098:CDS | 20.0% |
| !!! | ATTTGGGATGAATAATTTAT+GGG | + | chr7.3:20710417-20710436 | MS.gene068098:CDS | 20.0% |
| ! | TCAAAAAAATGGAAGAACAA+AGG | + | chr7.3:20710125-20710144 | MS.gene068098:CDS | 25.0% |
| !! | TTTGGGATGAATAATTTATG+GGG | + | chr7.3:20710418-20710437 | MS.gene068098:CDS | 25.0% |
| CTTGAAAATTGATAAGGGTA+TGG | - | chr7.3:20710199-20710218 | None:intergenic | 30.0% | |
| GAGAGCTTGAAAATTGATAA+GGG | - | chr7.3:20710204-20710223 | None:intergenic | 30.0% | |
| GATATTAGATCGATACCTTA+GGG | - | chr7.3:20710173-20710192 | None:intergenic | 30.0% | |
| ! | AAAATTGATAAGGGTATGGA+AGG | - | chr7.3:20710195-20710214 | None:intergenic | 30.0% |
| AGATGAAGATGACAGAAATG+AGG | + | chr7.3:20710600-20710619 | MS.gene068098:CDS | 35.0% | |
| ATGAATAATTTATGGGGTGG+AGG | + | chr7.3:20710424-20710443 | MS.gene068098:CDS | 35.0% | |
| CTGTCATCTTCATCTTCAAT+AGG | - | chr7.3:20710595-20710614 | None:intergenic | 35.0% | |
| GGAGAGCTTGAAAATTGATA+AGG | - | chr7.3:20710205-20710224 | None:intergenic | 35.0% | |
| GGATATTAGATCGATACCTT+AGG | - | chr7.3:20710174-20710193 | None:intergenic | 35.0% | |
| TACGGAAATATGAATACCCT+TGG | - | chr7.3:20710234-20710253 | None:intergenic | 35.0% | |
| TCTTCAATAGGATCATGAGA+AGG | - | chr7.3:20710583-20710602 | None:intergenic | 35.0% | |
| TGAGCGTGTCTTCAAAAAAA+TGG | + | chr7.3:20710114-20710133 | MS.gene068098:CDS | 35.0% | |
| AAACCTCAAGCGCAAAATGA+TGG | + | chr7.3:20709817-20709836 | MS.gene068098:CDS | 40.0% | |
| AAGATCAAACACTGTGGGTT+TGG | + | chr7.3:20710474-20710493 | MS.gene068098:CDS | 40.0% | |
| AAGATGCCTCAGAAATTGGA+GGG | - | chr7.3:20710525-20710544 | None:intergenic | 40.0% | |
| AAGGCAAGGAATTGTTCACA+TGG | - | chr7.3:20710285-20710304 | None:intergenic | 40.0% | |
| AATGGAAGAACAAAGGAGAG+AGG | + | chr7.3:20710132-20710151 | MS.gene068098:CDS | 40.0% | |
| AGGCAAGGAATTGTTCACAT+GGG | - | chr7.3:20710284-20710303 | None:intergenic | 40.0% | |
| CAAGAGAATTCCTTCACTTG+CGG | - | chr7.3:20710028-20710047 | None:intergenic | 40.0% | |
| CCACAAAGATCAAACACTGT+GGG | + | chr7.3:20710469-20710488 | MS.gene068098:CDS | 40.0% | |
| CCCAAATTGTGATGTTGCAA+GGG | - | chr7.3:20710404-20710423 | None:intergenic | 40.0% | |
| CCCTTGCAACATCACAATTT+GGG | + | chr7.3:20710401-20710420 | MS.gene068098:CDS | 40.0% | |
| GCAAGGGATGAATTTGACAA+TGG | - | chr7.3:20710388-20710407 | None:intergenic | 40.0% | |
| GGGATGAATAATTTATGGGG+TGG | + | chr7.3:20710421-20710440 | MS.gene068098:CDS | 40.0% | |
| GTGTTTGATCTTTGTGGAGT+TGG | - | chr7.3:20710466-20710485 | None:intergenic | 40.0% | |
| TCAGAAGATGCCTCAGAAAT+TGG | - | chr7.3:20710529-20710548 | None:intergenic | 40.0% | |
| TCCACAAAGATCAAACACTG+TGG | + | chr7.3:20710468-20710487 | MS.gene068098:CDS | 40.0% | |
| TCCCAAATTGTGATGTTGCA+AGG | - | chr7.3:20710405-20710424 | None:intergenic | 40.0% | |
| TCCCTTGCAACATCACAATT+TGG | + | chr7.3:20710400-20710419 | MS.gene068098:CDS | 40.0% | |
| TGAACAATTCCTTGCCTTCT+TGG | + | chr7.3:20710287-20710306 | MS.gene068098:CDS | 40.0% | |
| TGTTCACATGGGAACCAATT+GGG | - | chr7.3:20710273-20710292 | None:intergenic | 40.0% | |
| TTGTTCACATGGGAACCAAT+TGG | - | chr7.3:20710274-20710293 | None:intergenic | 40.0% | |
| !! | AATTTCTGAGGCATCTTCTG+AGG | + | chr7.3:20710528-20710547 | MS.gene068098:CDS | 40.0% |
| !! | ATTTCTGAGGCATCTTCTGA+GGG | + | chr7.3:20710529-20710548 | MS.gene068098:CDS | 40.0% |
| !! | TATGAATACCCTTGGTAGTG+TGG | - | chr7.3:20710226-20710245 | None:intergenic | 40.0% |
| AAATCCCACTTCCAAACCCT+TGG | + | chr7.3:20709946-20709965 | MS.gene068098:CDS | 45.0% | |
| AAATGAGGCTAATCCCAACG+AGG | + | chr7.3:20710615-20710634 | MS.gene068098:CDS | 45.0% | |
| AAGTTCAGTTCCTCCTCGTT+GGG | - | chr7.3:20710631-20710650 | None:intergenic | 45.0% | |
| AATTCCTTGCCTTCTTGGCT+TGG | + | chr7.3:20710292-20710311 | MS.gene068098:CDS | 45.0% | |
| ACTTCCAAACCCTTGGAGAA+TGG | + | chr7.3:20709953-20709972 | MS.gene068098:CDS | 45.0% | |
| AGATGCCTCAGAAATTGGAG+GGG | - | chr7.3:20710524-20710543 | None:intergenic | 45.0% | |
| ATCACAAATCGTGATGCAGG+AGG | - | chr7.3:20710364-20710383 | None:intergenic | 45.0% | |
| ATTCTCCAAGGGTTTGGAAG+TGG | - | chr7.3:20709954-20709973 | None:intergenic | 45.0% | |
| CCCACAGTGTTTGATCTTTG+TGG | - | chr7.3:20710472-20710491 | None:intergenic | 45.0% | |
| GAAGATGCCTCAGAAATTGG+AGG | - | chr7.3:20710526-20710545 | None:intergenic | 45.0% | |
| GAATGCTCACCATTCTCCAA+GGG | - | chr7.3:20709965-20709984 | None:intergenic | 45.0% | |
| GATTTCTTGACCTTGAGGCT+TGG | + | chr7.3:20709914-20709933 | MS.gene068098:CDS | 45.0% | |
| TCAAACCCCTCCAATTTCTG+AGG | + | chr7.3:20710516-20710535 | MS.gene068098:CDS | 45.0% | |
| TGAATGCTCACCATTCTCCA+AGG | - | chr7.3:20709966-20709985 | None:intergenic | 45.0% | |
| TTCGGAGCAAGAGTCGAAAT+CGG | + | chr7.3:20709844-20709863 | MS.gene068098:CDS | 45.0% | |
| TTCTCCAAGGGTTTGGAAGT+GGG | - | chr7.3:20709953-20709972 | None:intergenic | 45.0% | |
| TTGGAGAATGGTGAGCATTC+AGG | + | chr7.3:20709965-20709984 | MS.gene068098:CDS | 45.0% | |
| ! | ATGTGATCGATTCAGCCCTA+AGG | + | chr7.3:20710155-20710174 | MS.gene068098:CDS | 45.0% |
| ! | GCGCAAAATGATGGAGGATT+CGG | + | chr7.3:20709826-20709845 | MS.gene068098:CDS | 45.0% |
| AAGACATCACCACCAACCTC+TGG | + | chr7.3:20709878-20709897 | MS.gene068098:CDS | 50.0% | |
| ATCACCACCAACCTCTGGAT+CGG | + | chr7.3:20709883-20709902 | MS.gene068098:CDS | 50.0% | |
| CAACGAGGAGGAACTGAACT+TGG | + | chr7.3:20710630-20710649 | MS.gene068098:CDS | 50.0% | |
| CAAGCTCTCCACACTACCAA+GGG | + | chr7.3:20710215-20710234 | MS.gene068098:CDS | 50.0% | |
| CAAGTTCAGTTCCTCCTCGT+TGG | - | chr7.3:20710632-20710651 | None:intergenic | 50.0% | |
| CACATGGGAACCAATTGGGT+TGG | - | chr7.3:20710269-20710288 | None:intergenic | 50.0% | |
| CATCTTCTGGTGGCTATGGA+GGG | + | chr7.3:20710320-20710339 | MS.gene068098:CDS | 50.0% | |
| CCTCAAGCGCAAAATGATGG+AGG | + | chr7.3:20709820-20709839 | MS.gene068098:CDS | 50.0% | |
| CTCACCATTCTCCAAGGGTT+TGG | - | chr7.3:20709960-20709979 | None:intergenic | 50.0% | |
| CTGGCGATTTCTTGACCTTG+AGG | + | chr7.3:20709909-20709928 | MS.gene068098:CDS | 50.0% | |
| GATGAACCACCAAGCCAAGA+AGG | - | chr7.3:20710304-20710323 | None:intergenic | 50.0% | |
| GCAAGAGTCGAAATCGGAGA+AGG | + | chr7.3:20709850-20709869 | MS.gene068098:CDS | 50.0% | |
| GGCATCACAAATCGTGATGC+AGG | - | chr7.3:20710367-20710386 | None:intergenic | 50.0% | |
| GGTTCATCTTCTGGTGGCTA+TGG | + | chr7.3:20710316-20710335 | MS.gene068098:CDS | 50.0% | |
| TCAAGCTCTCCACACTACCA+AGG | + | chr7.3:20710214-20710233 | MS.gene068098:CDS | 50.0% | |
| TCATCTTCTGGTGGCTATGG+AGG | + | chr7.3:20710319-20710338 | MS.gene068098:CDS | 50.0% | |
| TTCTTGACCTTGAGGCTTGG+CGG | + | chr7.3:20709917-20709936 | MS.gene068098:CDS | 50.0% | |
| ! | CCTCCATCATTTTGCGCTTG+AGG | - | chr7.3:20709823-20709842 | None:intergenic | 50.0% |
| ! | CGTGATGCAGGAGGTGTATT+TGG | - | chr7.3:20710355-20710374 | None:intergenic | 50.0% |
| ! | CTTGGTGGTTCATCTTCTGG+TGG | + | chr7.3:20710310-20710329 | MS.gene068098:CDS | 50.0% |
| ! | GCTCACGCTTATGAGCGTTT+TGG | - | chr7.3:20710099-20710118 | None:intergenic | 50.0% |
| !! | GAGGTTGGTGGTGATGTCTT+TGG | - | chr7.3:20709878-20709897 | None:intergenic | 50.0% |
| !! | TGGCTTGGTGGTTCATCTTC+TGG | + | chr7.3:20710307-20710326 | MS.gene068098:CDS | 50.0% |
| AATTCCTTCACTTGCGGCGC+AGG | - | chr7.3:20710022-20710041 | None:intergenic | 55.0% | |
| ACCACCAAGCCAAGAAGGCA+AGG | - | chr7.3:20710299-20710318 | None:intergenic | 55.0% | |
| CCTCCAAGCGCTTGAGAAGT+GGG | - | chr7.3:20710073-20710092 | None:intergenic | 55.0% | |
| CTCCAAGCGCTTGAGAAGTG+GGG | - | chr7.3:20710072-20710091 | None:intergenic | 55.0% | |
| GGTTGGACAGGCTAGCACTA+CGG | - | chr7.3:20710252-20710271 | None:intergenic | 55.0% | |
| TCCTCCAAGCGCTTGAGAAG+TGG | - | chr7.3:20710074-20710093 | None:intergenic | 55.0% | |
| TGAGGCTAATCCCAACGAGG+AGG | + | chr7.3:20710618-20710637 | MS.gene068098:CDS | 55.0% | |
| TTCCCCACTTCTCAAGCGCT+TGG | + | chr7.3:20710067-20710086 | MS.gene068098:CDS | 55.0% | |
| ! | GCTAGCCTGTCCAACCCAAT+TGG | + | chr7.3:20710256-20710275 | MS.gene068098:CDS | 55.0% |
| !! | GGGAACCAATTGGGTTGGAC+AGG | - | chr7.3:20710264-20710283 | None:intergenic | 55.0% |
| !! | TCCTTGCCTTCTTGGCTTGG+TGG | + | chr7.3:20710295-20710314 | MS.gene068098:CDS | 55.0% |
| ATCGCCAGCATCCGATCCAG+AGG | - | chr7.3:20709897-20709916 | None:intergenic | 60.0% | |
| CCAACCTCTGGATCGGATGC+TGG | + | chr7.3:20709890-20709909 | MS.gene068098:CDS | 60.0% | |
| CCAGCATCCGATCCAGAGGT+TGG | - | chr7.3:20709893-20709912 | None:intergenic | 60.0% | |
| CCCACTTCTCAAGCGCTTGG+AGG | + | chr7.3:20710070-20710089 | MS.gene068098:CDS | 60.0% | |
| GCATCCGATCCAGAGGTTGG+TGG | - | chr7.3:20709890-20709909 | None:intergenic | 60.0% | |
| TTGACCTTGAGGCTTGGCGG+TGG | + | chr7.3:20709920-20709939 | MS.gene068098:CDS | 60.0% | |
| TCCACCTGCGCCGCAAGTGA+AGG | + | chr7.3:20710015-20710034 | MS.gene068098:CDS | 65.0% | |
| TCCTTCACTTGCGGCGCAGG+TGG | - | chr7.3:20710019-20710038 | None:intergenic | 65.0% | |
| TGTGCCACCGCCAAGCCTCA+AGG | - | chr7.3:20709927-20709946 | None:intergenic | 65.0% | |
| TTCACTTGCGGCGCAGGTGG+AGG | - | chr7.3:20710016-20710035 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 20709803 | 20710666 | 20709803 | ID=MS.gene068098 |
| chr7.3 | mRNA | 20709803 | 20710666 | 20709803 | ID=MS.gene068098.t1;Parent=MS.gene068098 |
| chr7.3 | exon | 20709803 | 20710666 | 20709803 | ID=MS.gene068098.t1.exon1;Parent=MS.gene068098.t1 |
| chr7.3 | CDS | 20709803 | 20710666 | 20709803 | ID=cds.MS.gene068098.t1;Parent=MS.gene068098.t1 |
| Gene Sequence |
| Protein sequence |
