Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068152.t1 | XP_024630388.1 | 60.6 | 325 | 57 | 5 | 2 | 259 | 64 | 384 | 3.20E-79 | 305.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068152.t1 | A0A072VFJ7 | 57.7 | 338 | 63 | 7 | 2 | 263 | 64 | 397 | 3.9e-74 | 287.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene068152.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068152.t1 | MTR_1g035570 | 75.410 | 122 | 24 | 2 | 148 | 263 | 276 | 397 | 1.41e-53 | 179 |
| MS.gene068152.t1 | MTR_1g035570 | 45.185 | 270 | 88 | 8 | 2 | 259 | 64 | 285 | 1.69e-53 | 178 |
| MS.gene068152.t1 | MTR_1g035490 | 71.429 | 119 | 32 | 1 | 148 | 264 | 214 | 332 | 1.44e-51 | 171 |
| MS.gene068152.t1 | MTR_1g035490 | 42.797 | 236 | 67 | 9 | 45 | 263 | 15 | 199 | 6.13e-32 | 120 |
| MS.gene068152.t1 | MTR_1g035640 | 31.408 | 277 | 109 | 9 | 2 | 259 | 64 | 278 | 6.21e-26 | 105 |
| MS.gene068152.t1 | MTR_1g035640 | 39.098 | 133 | 52 | 2 | 133 | 261 | 358 | 465 | 9.14e-16 | 77.0 |
| MS.gene068152.t1 | MTR_1g035620 | 49.020 | 102 | 48 | 2 | 165 | 264 | 314 | 413 | 2.72e-22 | 95.5 |
| MS.gene068152.t1 | MTR_1g035620 | 28.030 | 264 | 132 | 8 | 2 | 260 | 68 | 278 | 1.71e-20 | 90.1 |
| MS.gene068152.t1 | MTR_1g035520 | 28.745 | 247 | 146 | 8 | 28 | 260 | 153 | 383 | 8.11e-18 | 82.4 |
| MS.gene068152.t1 | MTR_1g050845 | 28.782 | 271 | 107 | 8 | 2 | 259 | 68 | 265 | 1.81e-17 | 82.4 |
| MS.gene068152.t1 | MTR_6g061070 | 42.342 | 111 | 53 | 4 | 160 | 260 | 361 | 470 | 2.67e-16 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 56 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGTTCAACAAGAAATATTT+TGG | 0.149501 | 1.4:-37224072 | MS.gene068152:CDS |
| GAACACCATTGGGAAATTTA+TGG | 0.175960 | 1.4:+37224089 | None:intergenic |
| ATTGTCCTTTGAGCTTTCTT+TGG | 0.254871 | 1.4:+37223783 | None:intergenic |
| TTGGGAAATTTATGGAATAT+AGG | 0.271972 | 1.4:+37224097 | None:intergenic |
| TTAATGGAACTGTAACAATA+AGG | 0.273629 | 1.4:-37223142 | MS.gene068152:CDS |
| TTCATCAACTGATTTGATAT+TGG | 0.273749 | 1.4:+37223899 | None:intergenic |
| AGAAATATGTGGAGAAATAT+TGG | 0.281812 | 1.4:-37224135 | None:intergenic |
| GCATAACACATTCAAGGTTT+TGG | 0.294441 | 1.4:-37222053 | MS.gene068152:CDS |
| TGGGAAATTTATGGAATATA+GGG | 0.298160 | 1.4:+37224098 | None:intergenic |
| AAATATTGTGGAGTTGAAAA+TGG | 0.298192 | 1.4:-37221881 | MS.gene068152:CDS |
| AAAGCTCAAAGGACAATAAA+TGG | 0.303877 | 1.4:-37223777 | MS.gene068152:CDS |
| CATTAACAGCTTCAGATGTT+TGG | 0.351304 | 1.4:+37223338 | None:intergenic |
| TAATGGAACTGTAACAATAA+GGG | 0.353376 | 1.4:-37223141 | MS.gene068152:CDS |
| ATAGTTTATTTCTAAAGTAT+TGG | 0.406626 | 1.4:+37223923 | None:intergenic |
| AGTATTCGTGGCTGCAAGTT+CGG | 0.421831 | 1.4:-37221820 | MS.gene068152:CDS |
| ATTTCTTGTTGAACACCATT+GGG | 0.424115 | 1.4:+37224079 | None:intergenic |
| TATTTCTTGTTGAACACCAT+TGG | 0.435829 | 1.4:+37224078 | None:intergenic |
| AATATTGTGGAGTTGAAAAT+GGG | 0.451536 | 1.4:-37221880 | MS.gene068152:CDS |
| CAAGAATGCAATGTGGAGAT+TGG | 0.459399 | 1.4:-37221775 | MS.gene068152:CDS |
| AAGTGATGAAGAGAGTGATA+AGG | 0.461668 | 1.4:-37223814 | MS.gene068152:CDS |
| CGTGGCTGCAAGTTCGGTAA+AGG | 0.465915 | 1.4:-37221814 | MS.gene068152:CDS |
| TGTCATTATAACTTCAAAAG+AGG | 0.475259 | 1.4:+37223309 | None:intergenic |
| GGTGCTGAAGCCACTGAAGA+AGG | 0.489506 | 1.4:-37223876 | MS.gene068152:CDS |
| GATGAAGCATAACACATTCA+AGG | 0.490908 | 1.4:-37222059 | MS.gene068152:CDS |
| CCAAAGGAATTTATGAAAAG+AGG | 0.492978 | 1.4:-37221913 | MS.gene068152:CDS |
| TGTAACAATAAGGGTTGGTA+AGG | 0.500725 | 1.4:-37223132 | MS.gene068152:CDS |
| TACTGTACAGAAGGTCATGA+TGG | 0.501012 | 1.4:-37222082 | MS.gene068152:intron |
| GTCATTATAACTTCAAAAGA+GGG | 0.507540 | 1.4:+37223310 | None:intergenic |
| AATTATTATGAGAGTATTCG+TGG | 0.512630 | 1.4:-37221832 | MS.gene068152:CDS |
| ACTTTCTTTACCTTCTTCAG+TGG | 0.514754 | 1.4:+37223866 | None:intergenic |
| GATGAGGAAGCCACTGAAGA+AGG | 0.517797 | 1.4:-37223843 | MS.gene068152:CDS |
| ACTTTCTTCACCTTCTTCAG+TGG | 0.520796 | 1.4:+37223833 | None:intergenic |
| TAACAAAGTCGCCGTGGTGA+AGG | 0.525119 | 1.4:-37223374 | MS.gene068152:CDS |
| AGGATGTCATGGAAATATTG+TGG | 0.534496 | 1.4:-37221893 | MS.gene068152:CDS |
| TTTATGAAAAGAGGATGTCA+TGG | 0.534842 | 1.4:-37221904 | MS.gene068152:CDS |
| AATGGCAAGAGAAAATTCTC+AGG | 0.536390 | 1.4:-37223759 | MS.gene068152:intron |
| AATATCAAATCAGTTGATGA+AGG | 0.540855 | 1.4:-37223897 | MS.gene068152:CDS |
| ATAAGGGTTGGTAAGGAGTG+TGG | 0.544312 | 1.4:-37223125 | MS.gene068152:CDS |
| GCTGCAAGTTCGGTAAAGGT+TGG | 0.563561 | 1.4:-37221810 | MS.gene068152:CDS |
| TTTGGTGAAGAACACAGCCC+CGG | 0.573521 | 1.4:-37222035 | MS.gene068152:intron |
| CAAAGTCGCCGTGGTGAAGG+CGG | 0.573915 | 1.4:-37223371 | MS.gene068152:CDS |
| TGAAAATGGGGAGGAAGCCA+TGG | 0.575061 | 1.4:-37221867 | MS.gene068152:CDS |
| GTATTTGCAGAGTGTACCAA+AGG | 0.583029 | 1.4:-37221929 | MS.gene068152:intron |
| ACTTACAAAGAAATAGCCAT+TGG | 0.588354 | 1.4:+37223276 | None:intergenic |
| AGAAGGTAAAGAAAGTGATG+AGG | 0.601536 | 1.4:-37223859 | MS.gene068152:CDS |
| ATGACACAATCTTACACCAA+TGG | 0.609025 | 1.4:-37223292 | MS.gene068152:CDS |
| ATATTCCATAAATTTCCCAA+TGG | 0.609358 | 1.4:-37224094 | MS.gene068152:CDS |
| TATGTGGAGAAATATTGGAA+AGG | 0.617787 | 1.4:-37224130 | MS.gene068152:CDS |
| GGAACTGTAACAATAAGGGT+TGG | 0.627229 | 1.4:-37223137 | MS.gene068152:CDS |
| TTGTGGAGTTGAAAATGGGG+AGG | 0.632079 | 1.4:-37221876 | MS.gene068152:CDS |
| AAATGCCAAAGAAAGCTCAA+AGG | 0.663329 | 1.4:-37223788 | MS.gene068152:CDS |
| ACTGTACAGAAGGTCATGAT+GGG | 0.685690 | 1.4:-37222081 | MS.gene068152:intron |
| AGGGTTGGTAAGGAGTGTGG+AGG | 0.691473 | 1.4:-37223122 | MS.gene068152:intron |
| ATATTGTGGAGTTGAAAATG+GGG | 0.692849 | 1.4:-37221879 | MS.gene068152:CDS |
| ATTCATGCAAGAATGCAATG+TGG | 0.719326 | 1.4:-37221782 | MS.gene068152:CDS |
| AGGTTGTAACAAAGTCGCCG+TGG | 0.726423 | 1.4:-37223380 | MS.gene068152:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATATAATATATAGTTAATT+AGG | + | chr1.4:37223621-37223640 | None:intergenic | 10.0% |
| !! | CATTTATGATAAAAAAAATT+TGG | - | chr1.4:37222333-37222352 | MS.gene068152:intron | 10.0% |
| !!! | ATGAATAATTTATAAGTTTT+TGG | - | chr1.4:37223526-37223545 | MS.gene068152:intron | 10.0% |
| !!! | CTTATATATATGTAATTTTT+AGG | - | chr1.4:37223032-37223051 | MS.gene068152:intron | 10.0% |
| !! | ATTATATCTTTAAACTTTAC+AGG | - | chr1.4:37222428-37222447 | MS.gene068152:intron | 15.0% |
| !! | GAAAACTAAAATAAACATAA+GGG | - | chr1.4:37223276-37223295 | MS.gene068152:intron | 15.0% |
| !! | GAAAACTAAAATAAACATAA+GGG | + | chr1.4:37223295-37223276 | None:intergenic | 15.0% |
| !! | TGAAAACTAAAATAAACATA+AGG | - | chr1.4:37223275-37223294 | MS.gene068152:intron | 15.0% |
| !! | TGAAAACTAAAATAAACATA+AGG | + | chr1.4:37223294-37223275 | None:intergenic | 15.0% |
| !!! | AAATATGTTATTTTTTTGGA+AGG | - | chr1.4:37222291-37222310 | MS.gene068152:intron | 15.0% |
| !!! | ACATTTGGTTTAAAAAAATT+GGG | - | chr1.4:37221795-37221814 | MS.gene068152:CDS | 15.0% |
| !!! | AGTTTTTAATAGTTAGTAAT+TGG | - | chr1.4:37223553-37223572 | MS.gene068152:intron | 15.0% |
| !!! | ATAGTTTATTTCTAAAGTAT+TGG | + | chr1.4:37221908-37221927 | None:intergenic | 15.0% |
| !!! | CAAATATCTCTAAATTTTTT+GGG | - | chr1.4:37223682-37223701 | MS.gene068152:intron | 15.0% |
| !!! | GTTTATTTTAGTTTTCAAAT+TGG | + | chr1.4:37223363-37223382 | None:intergenic | 15.0% |
| !!! | TATTTTAAGGTTAAGATATT+TGG | - | chr1.4:37221880-37221899 | MS.gene068152:CDS | 15.0% |
| !!! | TCAAATATCTCTAAATTTTT+TGG | - | chr1.4:37223681-37223700 | MS.gene068152:intron | 15.0% |
| !!! | TCAGAACAATTTTAAAAATT+AGG | + | chr1.4:37223471-37223490 | None:intergenic | 15.0% |
| !!! | TTTTATTTAATTAATCCTAC+CGG | + | chr1.4:37223815-37223834 | None:intergenic | 15.0% |
| !! | GAAAACTAAAATAAACGTAT+GGG | - | chr1.4:37223367-37223386 | MS.gene068152:CDS | 20.0% |
| !! | GAAAACTAAAATAGACATAA+GGG | + | chr1.4:37223195-37223214 | None:intergenic | 20.0% |
| !! | TGAAAACTAAAATAAACGTA+TGG | - | chr1.4:37223366-37223385 | MS.gene068152:CDS | 20.0% |
| !! | TGAAAACTAAAATAGACATA+AGG | + | chr1.4:37223196-37223215 | None:intergenic | 20.0% |
| !! | TTGAAACTTTCAAAACATAA+GGG | - | chr1.4:37223396-37223415 | MS.gene068152:intron | 20.0% |
| !! | TTTATTTAATTAATCCTACC+GGG | + | chr1.4:37223814-37223833 | None:intergenic | 20.0% |
| !!! | AACTCGAAAAAAGATTTTAA+TGG | - | chr1.4:37222670-37222689 | MS.gene068152:intron | 20.0% |
| !!! | GACATTTGGTTTAAAAAAAT+TGG | - | chr1.4:37221794-37221813 | MS.gene068152:CDS | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+CGG | - | chr1.4:37223080-37223099 | MS.gene068152:intron | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+TGG | - | chr1.4:37223080-37223099 | MS.gene068152:intron | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+TGG | + | chr1.4:37223099-37223080 | None:intergenic | 20.0% |
| !!! | TGAAAACTTTTAAAACGTAA+GGG | + | chr1.4:37223136-37223155 | None:intergenic | 20.0% |
| !!! | TGTTCAACAAGAAATATTTT+GGG | - | chr1.4:37221757-37221776 | MS.gene068152:CDS | 20.0% |
| !!! | TTGAAAACTTTTAAAACGTA+AGG | + | chr1.4:37223137-37223156 | None:intergenic | 20.0% |
| ! | AAATATTGTGGAGTTGAAAA+TGG | - | chr1.4:37223947-37223966 | MS.gene068152:intron | 25.0% |
| ! | AACTTAATCCTACATAAGTT+AGG | + | chr1.4:37223579-37223598 | None:intergenic | 25.0% |
| ! | AATATTGTGGAGTTGAAAAT+GGG | - | chr1.4:37223948-37223967 | MS.gene068152:intron | 25.0% |
| ! | ATATTCCATAAATTTCCCAA+TGG | - | chr1.4:37221734-37221753 | MS.gene068152:CDS | 25.0% |
| ! | CTCTTAACTTTCAAATTCAT+TGG | - | chr1.4:37221850-37221869 | MS.gene068152:CDS | 25.0% |
| ! | CTTGAAACTTTCAAAACATA+AGG | - | chr1.4:37223395-37223414 | MS.gene068152:intron | 25.0% |
| ! | GTACAAGCATAAATACAAAA+TGG | + | chr1.4:37223729-37223748 | None:intergenic | 25.0% |
| ! | GTCATTATAACTTCAAAAGA+GGG | + | chr1.4:37222521-37222540 | None:intergenic | 25.0% |
| ! | TAAAACCTTGTAGTTTCTTT+GGG | + | chr1.4:37222901-37222920 | None:intergenic | 25.0% |
| ! | TAATGGAACTGTAACAATAA+GGG | - | chr1.4:37222687-37222706 | MS.gene068152:intron | 25.0% |
| ! | TGGGAAATTTATGGAATATA+GGG | + | chr1.4:37221733-37221752 | None:intergenic | 25.0% |
| ! | TGTCATTATAACTTCAAAAG+AGG | + | chr1.4:37222522-37222541 | None:intergenic | 25.0% |
| ! | TTAAAACCTTGTAGTTTCTT+TGG | + | chr1.4:37222902-37222921 | None:intergenic | 25.0% |
| ! | TTAACTTTCAAATTCATTGG+TGG | - | chr1.4:37221853-37221872 | MS.gene068152:CDS | 25.0% |
| ! | TTAATGGAACTGTAACAATA+AGG | - | chr1.4:37222686-37222705 | MS.gene068152:intron | 25.0% |
| ! | TTACAAAGAAAGATCTTGTT+TGG | - | chr1.4:37222748-37222767 | MS.gene068152:intron | 25.0% |
| ! | TTATTTAATTAATCCTACCG+GGG | + | chr1.4:37223813-37223832 | None:intergenic | 25.0% |
| ! | TTGAAACTTTCAAAACGTAA+GGG | - | chr1.4:37223336-37223355 | MS.gene068152:CDS | 25.0% |
| ! | TTGAAACTTTCAAAACGTAA+GGG | + | chr1.4:37223355-37223336 | None:intergenic | 25.0% |
| ! | TTGGGAAATTTATGGAATAT+AGG | + | chr1.4:37221734-37221753 | None:intergenic | 25.0% |
| ! | TTTGCAAAGTCTTTCAAATA+TGG | - | chr1.4:37221823-37221842 | MS.gene068152:CDS | 25.0% |
| !! | GTGTTCAACAAGAAATATTT+TGG | - | chr1.4:37221756-37221775 | MS.gene068152:CDS | 25.0% |
| !! | TACAAAGAAAGATCTTGTTT+GGG | - | chr1.4:37222749-37222768 | MS.gene068152:intron | 25.0% |
| !!! | AACTTTTAAGAGTTATTCCA+TGG | - | chr1.4:37222168-37222187 | MS.gene068152:intron | 25.0% |
| !!! | AATATCAAATCAGTTGATGA+AGG | - | chr1.4:37221931-37221950 | MS.gene068152:intron | 25.0% |
| !!! | AATTATTATGAGAGTATTCG+TGG | - | chr1.4:37223996-37224015 | MS.gene068152:intron | 25.0% |
| !!! | ATGTTTTGAAAGTTTCAAGT+TGG | + | chr1.4:37223394-37223413 | None:intergenic | 25.0% |
| !!! | CGTTTTAAAAGTTTTCAAGT+TGG | - | chr1.4:37223139-37223158 | MS.gene068152:CDS | 25.0% |
| !!! | GTCTATTTTAGTTTTCAAGT+TGG | - | chr1.4:37223199-37223218 | MS.gene068152:intron | 25.0% |
| !!! | TTCATCAACTGATTTGATAT+TGG | + | chr1.4:37221932-37221951 | None:intergenic | 25.0% |
| AAAGCTCAAAGGACAATAAA+TGG | - | chr1.4:37222051-37222070 | MS.gene068152:CDS | 30.0% | |
| ACTTACAAAGAAATAGCCAT+TGG | + | chr1.4:37222555-37222574 | None:intergenic | 30.0% | |
| ATAGTGACAGTGAATGAAAA+AGG | + | chr1.4:37222854-37222873 | None:intergenic | 30.0% | |
| ATATTGTGGAGTTGAAAATG+GGG | - | chr1.4:37223949-37223968 | MS.gene068152:intron | 30.0% | |
| ATTAGGCTTAATTGCATGTT+TGG | + | chr1.4:37223454-37223473 | None:intergenic | 30.0% | |
| ATTTCTTGTTGAACACCATT+GGG | + | chr1.4:37221752-37221771 | None:intergenic | 30.0% | |
| CCAAAGGAATTTATGAAAAG+AGG | - | chr1.4:37223915-37223934 | MS.gene068152:CDS | 30.0% | |
| CTTGAAACTTTCAAAACGTA+AGG | - | chr1.4:37223335-37223354 | MS.gene068152:CDS | 30.0% | |
| CTTGAAACTTTCAAAACGTA+AGG | + | chr1.4:37223354-37223335 | None:intergenic | 30.0% | |
| GAAAAAATCACAACAAACCA+TGG | + | chr1.4:37222188-37222207 | None:intergenic | 30.0% | |
| GAAAATTCTCAGGTAAGTTT+AGG | - | chr1.4:37222079-37222098 | MS.gene068152:intron | 30.0% | |
| TATTTCTTGTTGAACACCAT+TGG | + | chr1.4:37221753-37221772 | None:intergenic | 30.0% | |
| TCTGAAAGCTTGTAAATCTA+AGG | - | chr1.4:37222208-37222227 | MS.gene068152:intron | 30.0% | |
| TTTAGGCTTAATTGCATGTT+TGG | - | chr1.4:37223049-37223068 | MS.gene068152:intron | 30.0% | |
| TTTATGAAAAGAGGATGTCA+TGG | - | chr1.4:37223924-37223943 | MS.gene068152:CDS | 30.0% | |
| ! | AGTGTCTTGAAAATCGTTTT+TGG | - | chr1.4:37222241-37222260 | MS.gene068152:intron | 30.0% |
| ! | CCTCTTTTCATAAATTCCTT+TGG | + | chr1.4:37223918-37223937 | None:intergenic | 30.0% |
| ! | TAAACCATGATTTGAAACAG+TGG | - | chr1.4:37222623-37222642 | MS.gene068152:intron | 30.0% |
| ! | TTTTCTCTTGAAAACTCACT+TGG | + | chr1.4:37222652-37222671 | None:intergenic | 30.0% |
| !! | CATTGGTGGATCATATTTTA+AGG | - | chr1.4:37221867-37221886 | MS.gene068152:CDS | 30.0% |
| !! | TAATTCACTTTTACGAACCA+TGG | + | chr1.4:37223981-37224000 | None:intergenic | 30.0% |
| !! | TCAACAAGAAATATTTTGGG+TGG | - | chr1.4:37221760-37221779 | MS.gene068152:CDS | 30.0% |
| !!! | ACGTTTTGAAAGTTTCAAGT+TGG | - | chr1.4:37223109-37223128 | MS.gene068152:intron | 30.0% |
| AAATGCCAAAGAAAGCTCAA+AGG | - | chr1.4:37222040-37222059 | MS.gene068152:CDS | 35.0% | |
| AAGTGATGAAGAGAGTGATA+AGG | - | chr1.4:37222014-37222033 | MS.gene068152:intron | 35.0% | |
| AATGGCAAGAGAAAATTCTC+AGG | - | chr1.4:37222069-37222088 | MS.gene068152:CDS | 35.0% | |
| ACTTTCTTTACCTTCTTCAG+TGG | + | chr1.4:37221965-37221984 | None:intergenic | 35.0% | |
| AGAAGGTAAAGAAAGTGATG+AGG | - | chr1.4:37221969-37221988 | MS.gene068152:intron | 35.0% | |
| AGGATGTCATGGAAATATTG+TGG | - | chr1.4:37223935-37223954 | MS.gene068152:CDS | 35.0% | |
| ATGACACAATCTTACACCAA+TGG | - | chr1.4:37222536-37222555 | MS.gene068152:intron | 35.0% | |
| ATTCATGCAAGAATGCAATG+TGG | - | chr1.4:37224046-37224065 | MS.gene068152:intron | 35.0% | |
| ATTGTCCTTTGAGCTTTCTT+TGG | + | chr1.4:37222048-37222067 | None:intergenic | 35.0% | |
| CATTAACAGCTTCAGATGTT+TGG | + | chr1.4:37222493-37222512 | None:intergenic | 35.0% | |
| GAACACCATTGGGAAATTTA+TGG | + | chr1.4:37221742-37221761 | None:intergenic | 35.0% | |
| GATGAAGCATAACACATTCA+AGG | - | chr1.4:37223769-37223788 | MS.gene068152:CDS | 35.0% | |
| GTAACCACTGTTTCAAATCA+TGG | + | chr1.4:37222630-37222649 | None:intergenic | 35.0% | |
| TGGTGGTTGGAAAATATTCA+GGG | - | chr1.4:37222772-37222791 | MS.gene068152:intron | 35.0% | |
| TTATGCTTGTACTGTACAGA+AGG | - | chr1.4:37223737-37223756 | MS.gene068152:intron | 35.0% | |
| ! | AAAGAAAGATCTTGTTTGGG+TGG | - | chr1.4:37222752-37222771 | MS.gene068152:intron | 35.0% |
| ! | GCATAACACATTCAAGGTTT+TGG | - | chr1.4:37223775-37223794 | MS.gene068152:CDS | 35.0% |
| ! | GTAATTGGCCTAACTTATGT+AGG | - | chr1.4:37223568-37223587 | MS.gene068152:intron | 35.0% |
| !! | ATATTTTGGGTGGAGAGTAA+TGG | - | chr1.4:37221770-37221789 | MS.gene068152:CDS | 35.0% |
| !! | GAGGTTAGTTTGAGGTATTA+TGG | - | chr1.4:37222725-37222744 | MS.gene068152:intron | 35.0% |
| !! | TGTAACAATAAGGGTTGGTA+AGG | - | chr1.4:37222696-37222715 | MS.gene068152:intron | 35.0% |
| ACTGTACAGAAGGTCATGAT+GGG | - | chr1.4:37223747-37223766 | MS.gene068152:intron | 40.0% | |
| ACTTTCTTCACCTTCTTCAG+TGG | + | chr1.4:37221998-37222017 | None:intergenic | 40.0% | |
| CAAGAATGCAATGTGGAGAT+TGG | - | chr1.4:37224053-37224072 | MS.gene068152:intron | 40.0% | |
| CAAGTCGGTCCAAAACATAA+GGG | - | chr1.4:37223245-37223264 | MS.gene068152:intron | 40.0% | |
| GCAATCCCAAAGAAACTACA+AGG | - | chr1.4:37222893-37222912 | MS.gene068152:intron | 40.0% | |
| GGAACTGTAACAATAAGGGT+TGG | - | chr1.4:37222691-37222710 | MS.gene068152:intron | 40.0% | |
| GTATTTGCAGAGTGTACCAA+AGG | - | chr1.4:37223899-37223918 | MS.gene068152:CDS | 40.0% | |
| GTGGTGGTTGGAAAATATTC+AGG | - | chr1.4:37222771-37222790 | MS.gene068152:intron | 40.0% | |
| TACTGTACAGAAGGTCATGA+TGG | - | chr1.4:37223746-37223765 | MS.gene068152:intron | 40.0% | |
| TCAAGTCGGTCCAAAACATA+AGG | - | chr1.4:37223244-37223263 | MS.gene068152:intron | 40.0% | |
| TGGAGAGTAATGGTGACATT+TGG | - | chr1.4:37221780-37221799 | MS.gene068152:CDS | 40.0% | |
| !!! | CAAGTTGGTCCCTTATGTTT+TGG | + | chr1.4:37223233-37223214 | None:intergenic | 40.0% |
| ACTGTCACTATTACTCGTGC+CGG | - | chr1.4:37222863-37222882 | MS.gene068152:intron | 45.0% | |
| AGTATTCGTGGCTGCAAGTT+CGG | - | chr1.4:37224008-37224027 | MS.gene068152:intron | 45.0% | |
| TTGTGGAGTTGAAAATGGGG+AGG | - | chr1.4:37223952-37223971 | MS.gene068152:intron | 45.0% | |
| ! | GAAAGATCTTGTTTGGGTGG+TGG | - | chr1.4:37222755-37222774 | MS.gene068152:intron | 45.0% |
| !! | ATAAGGGTTGGTAAGGAGTG+TGG | - | chr1.4:37222703-37222722 | MS.gene068152:intron | 45.0% |
| !! | CTTTGGGATTGCTTCGTTTC+CGG | + | chr1.4:37222885-37222904 | None:intergenic | 45.0% |
| !!! | AATTAAAAAAGTTTTTAATT+TGG | - | chr1.4:37223492-37223511 | MS.gene068152:intron | 5.0% |
| !!! | ATAAAAATATGTTATTTTTT+TGG | - | chr1.4:37222287-37222306 | MS.gene068152:intron | 5.0% |
| AGGTTGTAACAAAGTCGCCG+TGG | - | chr1.4:37222448-37222467 | MS.gene068152:intron | 50.0% | |
| GATGAGGAAGCCACTGAAGA+AGG | - | chr1.4:37221985-37222004 | MS.gene068152:intron | 50.0% | |
| GCTGCAAGTTCGGTAAAGGT+TGG | - | chr1.4:37224018-37224037 | MS.gene068152:intron | 50.0% | |
| TAACAAAGTCGCCGTGGTGA+AGG | - | chr1.4:37222454-37222473 | MS.gene068152:intron | 50.0% | |
| TGAAAATGGGGAGGAAGCCA+TGG | - | chr1.4:37223961-37223980 | MS.gene068152:intron | 50.0% | |
| TTTGGTGAAGAACACAGCCC+CGG | - | chr1.4:37223793-37223812 | MS.gene068152:CDS | 50.0% | |
| ! | GATCTTGTTTGGGTGGTGGT+TGG | - | chr1.4:37222759-37222778 | MS.gene068152:intron | 50.0% |
| !! | GGAGTGTGGAGGTTAGTTTG+AGG | - | chr1.4:37222717-37222736 | MS.gene068152:intron | 50.0% |
| !! | TTTTCTAGCCGCCTTCACCA+CGG | + | chr1.4:37222468-37222487 | None:intergenic | 50.0% |
| CGTGGCTGCAAGTTCGGTAA+AGG | - | chr1.4:37224014-37224033 | MS.gene068152:intron | 55.0% | |
| ! | GGTGCTGAAGCCACTGAAGA+AGG | - | chr1.4:37221952-37221971 | MS.gene068152:intron | 55.0% |
| !! | AGGGTTGGTAAGGAGTGTGG+AGG | - | chr1.4:37222706-37222725 | MS.gene068152:intron | 55.0% |
| CAAAGTCGCCGTGGTGAAGG+CGG | - | chr1.4:37222457-37222476 | MS.gene068152:intron | 60.0% | |
| GTGAAGAACACAGCCCCGGT+AGG | - | chr1.4:37223797-37223816 | MS.gene068152:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 37221699 | 37224151 | 37221699 | ID=MS.gene068152 |
| chr1.4 | mRNA | 37221699 | 37224151 | 37221699 | ID=MS.gene068152.t1;Parent=MS.gene068152 |
| chr1.4 | exon | 37224065 | 37224151 | 37224065 | ID=MS.gene068152.t1.exon1;Parent=MS.gene068152.t1 |
| chr1.4 | CDS | 37224065 | 37224151 | 37224065 | ID=cds.MS.gene068152.t1;Parent=MS.gene068152.t1 |
| chr1.4 | exon | 37223760 | 37223961 | 37223760 | ID=MS.gene068152.t1.exon2;Parent=MS.gene068152.t1 |
| chr1.4 | CDS | 37223760 | 37223961 | 37223760 | ID=cds.MS.gene068152.t1;Parent=MS.gene068152.t1 |
| chr1.4 | exon | 37223282 | 37223400 | 37223282 | ID=MS.gene068152.t1.exon3;Parent=MS.gene068152.t1 |
| chr1.4 | CDS | 37223282 | 37223400 | 37223282 | ID=cds.MS.gene068152.t1;Parent=MS.gene068152.t1 |
| chr1.4 | exon | 37223123 | 37223207 | 37223123 | ID=MS.gene068152.t1.exon4;Parent=MS.gene068152.t1 |
| chr1.4 | CDS | 37223123 | 37223207 | 37223123 | ID=cds.MS.gene068152.t1;Parent=MS.gene068152.t1 |
| chr1.4 | exon | 37222036 | 37222094 | 37222036 | ID=MS.gene068152.t1.exon5;Parent=MS.gene068152.t1 |
| chr1.4 | CDS | 37222036 | 37222094 | 37222036 | ID=cds.MS.gene068152.t1;Parent=MS.gene068152.t1 |
| chr1.4 | exon | 37221699 | 37221941 | 37221699 | ID=MS.gene068152.t1.exon6;Parent=MS.gene068152.t1 |
| chr1.4 | CDS | 37221699 | 37221941 | 37221699 | ID=cds.MS.gene068152.t1;Parent=MS.gene068152.t1 |
| Gene Sequence |
| Protein sequence |
