AlfalfaGEDB | MS.gene068379

M. sativa cultivar XinJiangDaYe / MS.gene068379

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02701.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068379.t1	XP_024629469.1	94.4	269	13	1	1	267	1	269	7.20E-143	516.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068379.t1	Q43385	48.7	269	83	16	16	267	66	296	1.2e-48	194.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068379.t1	A0A072TM78	94.4	269	13	1	1	267	1	269	5.2e-143	516.5

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene068379.t1	TF	C2C2-Dof

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068379.t1	MTR_8g027295	97.770	269	4	1	1	267	1	269	0.0	540
MS.gene068379.t1	MTR_3g091820	46.441	295	125	12	1	267	17	306	2.63e-69	216
MS.gene068379.t1	MTR_1g077600	44.815	270	104	12	4	258	21	260	1.30e-51	170
MS.gene068379.t1	MTR_1g077600	44.815	270	104	12	4	258	21	260	1.44e-51	170
MS.gene068379.t1	MTR_2g093220	75.000	72	16	1	9	78	23	94	9.71e-34	124
MS.gene068379.t1	MTR_3g077750	52.000	125	45	4	10	130	45	158	1.16e-30	117
MS.gene068379.t1	MTR_8g479350	54.808	104	41	2	21	124	65	162	1.88e-30	116
MS.gene068379.t1	MTR_4g063780	72.059	68	19	0	11	78	62	129	4.14e-30	115
MS.gene068379.t1	MTR_8g068210	66.250	80	24	2	15	92	21	99	1.32e-29	114
MS.gene068379.t1	MTR_4g022370	43.796	137	70	2	11	140	69	205	1.62e-29	114

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068379.t1	AT3G61850	51.246	281	86	19	16	267	54	312	3.12e-65	206
MS.gene068379.t1	AT3G61850	51.246	281	86	19	16	267	66	324	4.80e-65	206
MS.gene068379.t1	AT3G61850	48.889	270	81	16	16	267	54	284	6.50e-63	199
MS.gene068379.t1	AT3G61850	48.889	270	81	16	16	267	54	284	6.50e-63	199
MS.gene068379.t1	AT3G61850	48.889	270	81	16	16	267	66	296	1.21e-62	199
MS.gene068379.t1	AT2G46590	43.175	315	101	16	15	267	59	357	3.11e-53	176
MS.gene068379.t1	AT2G46590	43.175	315	101	16	15	267	71	369	3.72e-53	177
MS.gene068379.t1	AT4G24060	40.328	305	129	14	13	267	40	341	4.85e-45	155
MS.gene068379.t1	AT4G00940	62.727	110	39	1	18	125	62	171	6.22e-39	137
MS.gene068379.t1	AT4G00940	62.727	110	39	1	18	125	62	171	6.22e-39	137

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Find 66 sgRNAs with CRISPR-Local

Find 72 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTATTGTTATTAGCATA+AGG	0.374908	8.3:-67088775	None:intergenic
AAGAGCAAATAAATTGTCCA+AGG	0.610950	8.3:+67088338	MS.gene068379:CDS
AAGGAAATTCAACTGGATAT+TGG	0.307009	8.3:+67089028	MS.gene068379:CDS
AAGGATTAGAGAAGAAAGCA+AGG	0.621824	8.3:+67088311	MS.gene068379:CDS
AATAAACAGCTTTCTACAAG+TGG	0.552575	8.3:+67088976	MS.gene068379:CDS
AATTATTGTTATTAGCATAA+GGG	0.435765	8.3:-67088774	None:intergenic
AATTCAACTGGATATTGGAA+TGG	0.543811	8.3:+67089033	MS.gene068379:CDS
ACTAGGTTTAACTTCTTGCA+TGG	0.527857	8.3:-67088839	None:intergenic
AGAAATGTTCCTGTTGGAGG+TGG	0.521904	8.3:+67088469	MS.gene068379:CDS
AGAAGGTATTGGACTGAAGG+AGG	0.618740	8.3:+67088439	MS.gene068379:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAGCAAATAAATTGTCCA+AGG	+	chr8.3:67088338-67088357	MS.gene068379:CDS	30.0%
AAGGAAATTCAACTGGATAT+TGG	+	chr8.3:67089028-67089047	MS.gene068379:CDS	30.0%
AATAAACAGCTTTCTACAAG+TGG	+	chr8.3:67088976-67088995	MS.gene068379:CDS	30.0%
AATTCAACTGGATATTGGAA+TGG	+	chr8.3:67089033-67089052	MS.gene068379:CDS	30.0%
AGTCTTGGATTTACAATTGA+TGG	+	chr8.3:67088859-67088878	MS.gene068379:CDS	30.0%
ATGAAAGATGTGAAACTTGT+AGG	-	chr8.3:67088579-67088598	None:intergenic	30.0%
GAACACAATAAAGATCAACA+AGG	+	chr8.3:67089009-67089028	MS.gene068379:CDS	30.0%
TCAATTGTAAATCCAAGACT+AGG	-	chr8.3:67088859-67088878	None:intergenic	30.0%
TCTCAAAACCCTAAAATACA+AGG	+	chr8.3:67088598-67088617	MS.gene068379:CDS	30.0%
TGAAAGATGTGAAACTTGTA+GGG	-	chr8.3:67088578-67088597	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	67088277	67089080	67088277	ID=MS.gene068379
chr8.3	mRNA	67088277	67089080	67088277	ID=MS.gene068379.t1;Parent=MS.gene068379
chr8.3	exon	67088277	67089080	67088277	ID=MS.gene068379.t1.exon1;Parent=MS.gene068379.t1
chr8.3	CDS	67088277	67089080	67088277	ID=cds.MS.gene068379.t1;Parent=MS.gene068379.t1

Gene Sequence

>MS.gene068379

ATGGAAGGGTTAGCTCCTAATTCATGTCCAAGGCAAGGATTAGAGAAGAAAGCAAGGCCACAAGAGCAAATAAATTGTCCAAGGTGCAATTCAACCAACACAAAATTTTGTTATTACAACAACTACAGTCTCACACAACCAAGATACTTTTGCAAGACATGTAGAAGGTATTGGACTGAAGGAGGATCTCTAAGAAATGTTCCTGTTGGAGGTGGTTCAAGAAAGAACAAGAAAATTCCTTCATCATTAGCCACACCTAACAATAGTTCATCAAAAATTCCTGACCTAAATCCACCAACCCTACAAGTTTCACATCTTTCATCTCAAAACCCTAAAATACAAGGAGGCCAAGATCTTAACCTAGCTTTTCCATCTATGGAAAACTATCATCATAATCATGGTATGCCATCCTCATATGTTGAGATGCATAACAATAATGAATCATCATCTTCAGCTCTTGACCTACTTAGGTCAAGCATGGCATCTAGAGGCATAAACCCTTATGCTAATAACAATAATTTAGGGTTGCCAAACTCAAATGCTATTTATCCATCTGGATTCACCATGCAAGAAGTTAAACCTAGTCTTGGATTTACAATTGATGGAATTAATGGAAATAGATCATATGATCATGTTCAAGTTCAAGAAGGTGGTGGTGGTGGAAGACTTTTGTTCCCATTTGGAGATGTTAATGTTAATAATAAACAGCTTTCTACAAGTGGTGTTGAAGTGGAACACAATAAAGATCAACAAGGAAATTCAACTGGATATTGGAATGGAATGATGGGTGAAGGATCATGGTAA

Protein sequence

>MS.gene068379.t1

MEGLAPNSCPRQGLEKKARPQEQINCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKIPSSLATPNNSSSKIPDLNPPTLQVSHLSSQNPKIQGGQDLNLAFPSMENYHHNHGMPSSYVEMHNNNESSSSALDLLRSSMASRGINPYANNNNLGLPNSNAIYPSGFTMQEVKPSLGFTIDGINGNRSYDHVQVQEGGGGGRLLFPFGDVNVNNKQLSTSGVEVEHNKDQQGNSTGYWNGMMGEGSW