Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06847.t1 | XP_003602338.1 | 83.9 | 560 | 70 | 5 | 1 | 560 | 1 | 540 | 1.90E-233 | 818.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06847.t1 | O81001 | 55.2 | 96 | 25 | 3 | 128 | 206 | 133 | 227 | 5.6e-21 | 104.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06847.t1 | G7J891 | 83.9 | 560 | 70 | 5 | 1 | 560 | 1 | 540 | 1.3e-233 | 818.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene06847.t1 | TF | GRF |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06847.t1 | MTR_3g092330 | 91.429 | 560 | 28 | 7 | 1 | 560 | 1 | 540 | 0.0 | 930 |
MS.gene06847.t1 | MTR_1g017490 | 50.704 | 142 | 42 | 4 | 103 | 218 | 117 | 256 | 1.44e-33 | 135 |
MS.gene06847.t1 | MTR_1g017490 | 54.331 | 127 | 28 | 4 | 116 | 218 | 3 | 123 | 4.55e-33 | 133 |
MS.gene06847.t1 | MTR_0001s0490 | 53.153 | 111 | 35 | 2 | 128 | 221 | 25 | 135 | 3.01e-32 | 127 |
MS.gene06847.t1 | MTR_5g027030 | 57.000 | 100 | 35 | 2 | 126 | 218 | 14 | 112 | 6.79e-30 | 120 |
MS.gene06847.t1 | MTR_8g020560 | 49.541 | 109 | 37 | 2 | 129 | 219 | 12 | 120 | 1.83e-29 | 119 |
MS.gene06847.t1 | MTR_2g041430 | 50.000 | 114 | 35 | 3 | 128 | 219 | 7 | 120 | 3.35e-29 | 119 |
MS.gene06847.t1 | MTR_2g041430 | 50.000 | 114 | 35 | 3 | 128 | 219 | 7 | 120 | 3.88e-29 | 119 |
MS.gene06847.t1 | MTR_2g041430 | 50.000 | 114 | 35 | 3 | 128 | 219 | 7 | 120 | 4.15e-29 | 119 |
MS.gene06847.t1 | MTR_7g104050 | 44.604 | 139 | 50 | 3 | 109 | 225 | 60 | 193 | 8.62e-29 | 118 |
MS.gene06847.t1 | MTR_4g125490 | 49.153 | 118 | 42 | 3 | 128 | 227 | 9 | 126 | 1.00e-28 | 119 |
MS.gene06847.t1 | MTR_7g104050 | 44.604 | 139 | 50 | 3 | 109 | 225 | 60 | 193 | 1.26e-28 | 118 |
MS.gene06847.t1 | MTR_8g035910 | 46.218 | 119 | 51 | 3 | 127 | 233 | 48 | 165 | 3.38e-23 | 102 |
MS.gene06847.t1 | MTR_8g035910 | 56.667 | 60 | 25 | 1 | 154 | 212 | 276 | 335 | 7.41e-14 | 74.3 |
MS.gene06847.t1 | MTR_8g035640 | 52.542 | 59 | 27 | 1 | 155 | 212 | 31 | 89 | 1.59e-12 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06847.t1 | AT4G37740 | 54.701 | 117 | 35 | 3 | 128 | 227 | 164 | 279 | 4.26e-33 | 133 |
MS.gene06847.t1 | AT5G53660 | 56.140 | 114 | 46 | 2 | 126 | 235 | 57 | 170 | 1.19e-32 | 129 |
MS.gene06847.t1 | AT2G22840 | 54.310 | 116 | 35 | 2 | 128 | 226 | 133 | 247 | 2.94e-31 | 127 |
MS.gene06847.t1 | AT3G13960 | 51.327 | 113 | 37 | 2 | 124 | 218 | 12 | 124 | 6.46e-30 | 122 |
MS.gene06847.t1 | AT4G24150 | 41.718 | 163 | 64 | 5 | 102 | 242 | 90 | 243 | 3.86e-29 | 120 |
MS.gene06847.t1 | AT4G24150 | 41.718 | 163 | 64 | 5 | 102 | 242 | 128 | 281 | 5.98e-29 | 120 |
MS.gene06847.t1 | AT2G36400 | 52.137 | 117 | 35 | 1 | 129 | 224 | 77 | 193 | 1.81e-28 | 117 |
MS.gene06847.t1 | AT3G52910 | 49.107 | 112 | 35 | 1 | 129 | 218 | 83 | 194 | 2.64e-26 | 111 |
MS.gene06847.t1 | AT4G24150 | 36.170 | 188 | 64 | 5 | 102 | 242 | 128 | 306 | 1.28e-25 | 110 |
MS.gene06847.t1 | AT2G06200 | 42.759 | 145 | 48 | 5 | 102 | 216 | 23 | 162 | 1.48e-25 | 107 |
MS.gene06847.t1 | AT2G06200 | 46.610 | 118 | 34 | 3 | 128 | 216 | 6 | 123 | 2.24e-25 | 105 |
MS.gene06847.t1 | AT2G45480 | 44.444 | 108 | 42 | 2 | 126 | 215 | 22 | 129 | 8.45e-19 | 87.8 |
MS.gene06847.t1 | AT2G45480 | 44.444 | 108 | 42 | 2 | 126 | 215 | 20 | 127 | 5.06e-18 | 87.0 |
MS.gene06847.t1 | AT2G45480 | 50.000 | 74 | 32 | 3 | 154 | 227 | 287 | 355 | 2.57e-13 | 72.4 |
MS.gene06847.t1 | AT2G45480 | 44.444 | 108 | 42 | 2 | 126 | 215 | 22 | 129 | 5.13e-18 | 87.0 |
MS.gene06847.t1 | AT2G45480 | 50.000 | 74 | 32 | 3 | 154 | 227 | 289 | 357 | 2.52e-13 | 72.8 |
MS.gene06847.t1 | AT2G06200 | 72.727 | 44 | 10 | 1 | 175 | 216 | 8 | 51 | 5.73e-16 | 76.3 |
Find 125 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAAACACAAACTAACCTTTA+AGG | 0.146408 | 3.1:-74317383 | None:intergenic |
GTGAAAAGGTTGAAAATTTA+AGG | 0.152843 | 3.1:-74317337 | None:intergenic |
GCTTCCAACACAACCCTTAA+AGG | 0.155280 | 3.1:+74317369 | MS.gene06847:CDS |
CTTTCACAGTACTTGTTATT+AGG | 0.229946 | 3.1:-74318022 | None:intergenic |
GTCGAATCCATTGGCACTTC+AGG | 0.255897 | 3.1:+74319312 | MS.gene06847:CDS |
TTCCCTTGGTGCTTCTAATT+CGG | 0.262187 | 3.1:+74318735 | MS.gene06847:CDS |
ACAACATACAACATGTCTTT+TGG | 0.266442 | 3.1:+74317261 | MS.gene06847:CDS |
AATCCAACTACAAGAAAATA+TGG | 0.279540 | 3.1:+74318199 | MS.gene06847:CDS |
TCCCTTGGTGCTTCTAATTC+GGG | 0.284487 | 3.1:+74318736 | MS.gene06847:CDS |
TTAGAAGCACCAAGGGAAAT+TGG | 0.307978 | 3.1:-74318730 | None:intergenic |
AACCTCTTGGTTTCTCAGAT+TGG | 0.311180 | 3.1:-74318936 | None:intergenic |
GCCCTTGATGATGCAACATT+TGG | 0.323926 | 3.1:-74319417 | None:intergenic |
TATGATTTACAAGTACTTGA+TGG | 0.325776 | 3.1:+74317609 | MS.gene06847:CDS |
TCAATCTGAGGCTATCAAAT+AGG | 0.341073 | 3.1:+74317924 | MS.gene06847:CDS |
GTGGAAATGAATTCAGATAC+TGG | 0.360987 | 3.1:-74318831 | None:intergenic |
AAACACAAACTAACCTTTAA+GGG | 0.361293 | 3.1:-74317382 | None:intergenic |
ACTACTAGTGTTATTGTTGT+TGG | 0.363306 | 3.1:-74317091 | None:intergenic |
TTCCACAGGCTTTCTTGAAC+GGG | 0.370446 | 3.1:-74318065 | None:intergenic |
GTCCACTAGCTGAAGTTCTA+AGG | 0.379508 | 3.1:+74319217 | MS.gene06847:CDS |
ATGATTAAACTTATTGAGTA+AGG | 0.386331 | 3.1:-74319454 | None:intergenic |
GCTAATGCTATCATTGATAA+TGG | 0.393717 | 3.1:+74317306 | MS.gene06847:CDS |
ATGGCGGCTTCAATAGGAAT+AGG | 0.401179 | 3.1:+74317538 | MS.gene06847:CDS |
TTCATCACTTGATCTATCAA+TGG | 0.407184 | 3.1:+74319065 | MS.gene06847:CDS |
GGATTCAGTGTTATTATGAT+AGG | 0.409147 | 3.1:-74318809 | None:intergenic |
GCTGTTGATGCTGAAGGTTA+TGG | 0.416004 | 3.1:+74317234 | MS.gene06847:CDS |
ATAGTCATCATCAAATCAAA+AGG | 0.419333 | 3.1:+74318116 | MS.gene06847:CDS |
TTTGCATAATAGCAGCTTTG+AGG | 0.429903 | 3.1:+74318282 | MS.gene06847:CDS |
CTTCTGCACCTACCAGCCTC+TGG | 0.433695 | 3.1:-74317959 | None:intergenic |
GGTGGAATGGCGGCTTCAAT+AGG | 0.433909 | 3.1:+74317532 | MS.gene06847:CDS |
ACCATTGTTGGAGGTGGTGG+TGG | 0.435162 | 3.1:-74319016 | None:intergenic |
GAAAATGAAGATTGGAGATA+AGG | 0.436913 | 3.1:-74318259 | None:intergenic |
CTCCTTTCACAATTGCTCAA+TGG | 0.446940 | 3.1:+74317566 | MS.gene06847:CDS |
GGATTAAGTAAGAGAGGAAA+GGG | 0.448727 | 3.1:-74318889 | None:intergenic |
ATTGTTGGAGGTGGTGGTGG+TGG | 0.456677 | 3.1:-74319013 | None:intergenic |
TATGCAAAGAAAATGAAGAT+TGG | 0.460286 | 3.1:-74318267 | None:intergenic |
GGCTCAATCCAGCACAACCT+TGG | 0.462541 | 3.1:+74319175 | MS.gene06847:CDS |
AACTGATGCAGAACCATTGT+TGG | 0.462885 | 3.1:-74319028 | None:intergenic |
GAAAGAAGATGAGAAGGAAC+AGG | 0.467897 | 3.1:-74317640 | None:intergenic |
TCATCACTTGATCTATCAAT+GGG | 0.468999 | 3.1:+74319066 | MS.gene06847:CDS |
CTGATGCATAACAACAAACT+TGG | 0.470877 | 3.1:+74318769 | MS.gene06847:CDS |
TCCATTGGCACTTCAGGGAC+AGG | 0.476778 | 3.1:+74319318 | MS.gene06847:CDS |
AAGATTGGAGATAAGGATGA+AGG | 0.477847 | 3.1:-74318252 | None:intergenic |
CTAAAATAGCATTCTCAAGT+TGG | 0.478113 | 3.1:+74319154 | MS.gene06847:CDS |
AATAACACTAGTAGTGTTGT+TGG | 0.478175 | 3.1:+74317099 | MS.gene06847:CDS |
CTAACCTTTAAGGGTTGTGT+TGG | 0.481457 | 3.1:-74317373 | None:intergenic |
GGAACAGCCACAGTAAAATC+AGG | 0.486638 | 3.1:-74318172 | None:intergenic |
GCTCAATCCAGCACAACCTT+GGG | 0.488726 | 3.1:+74319176 | MS.gene06847:CDS |
AGTTCAGAACTGTTATATAG+TGG | 0.490372 | 3.1:-74318850 | None:intergenic |
TGATAGATCAAGTGATGAAA+GGG | 0.490826 | 3.1:-74319061 | None:intergenic |
TCAATGAAACTAAAACCTCT+TGG | 0.493104 | 3.1:-74318949 | None:intergenic |
TCTGCTGCTGTTGATGCTGA+AGG | 0.494288 | 3.1:+74317228 | MS.gene06847:CDS |
GAGATAAGGATGAAGGGGAG+TGG | 0.496353 | 3.1:-74318245 | None:intergenic |
GTCCAAATGTTGCATCATCA+AGG | 0.496502 | 3.1:+74319415 | MS.gene06847:CDS |
AGATTGGAGATAAGGATGAA+GGG | 0.498515 | 3.1:-74318251 | None:intergenic |
TTATTTGTGTGAAGTTCCAC+AGG | 0.498667 | 3.1:-74318079 | None:intergenic |
TCGAATCCATTGGCACTTCA+GGG | 0.500942 | 3.1:+74319313 | MS.gene06847:CDS |
AGAACCATTGTTGGAGGTGG+TGG | 0.506509 | 3.1:-74319019 | None:intergenic |
GTTCCACAGGCTTTCTTGAA+CGG | 0.508728 | 3.1:-74318066 | None:intergenic |
TTTCTTGTAGTTGGATTAGG+AGG | 0.509981 | 3.1:-74318193 | None:intergenic |
GGCTTGGAGTGGATGCTGAA+TGG | 0.510711 | 3.1:+74318703 | MS.gene06847:CDS |
CTGATGGAAGTAACATTGCT+TGG | 0.510713 | 3.1:-74319240 | None:intergenic |
GATTGGAGATAAGGATGAAG+GGG | 0.516351 | 3.1:-74318250 | None:intergenic |
GAACCTACCCAAGGTTGTGC+TGG | 0.517275 | 3.1:-74319183 | None:intergenic |
TGGCGGCTTCAATAGGAATA+GGG | 0.523564 | 3.1:+74317539 | MS.gene06847:CDS |
TCCTGTCCCTGAAGTGCCAA+TGG | 0.523915 | 3.1:-74319319 | None:intergenic |
TCAGATTGGAGAGTTTGCAT+TGG | 0.524106 | 3.1:-74318922 | None:intergenic |
GAATTGAATGAAAAGGGGCT+TGG | 0.524945 | 3.1:+74318687 | MS.gene06847:intron |
CACTAGTAGTGTTGTTGGGT+CGG | 0.525074 | 3.1:+74317104 | MS.gene06847:CDS |
GAAGCAGAAATGTTGTGAAA+AGG | 0.532749 | 3.1:-74317351 | None:intergenic |
GGGATTAAGTAAGAGAGGAA+AGG | 0.533228 | 3.1:-74318890 | None:intergenic |
GGCCTTAGAACTTCAGCTAG+TGG | 0.534033 | 3.1:-74319219 | None:intergenic |
TTGATAGATCAAGTGATGAA+AGG | 0.535432 | 3.1:-74319062 | None:intergenic |
AGAATTTGTTGCATCACTGA+TGG | 0.536310 | 3.1:-74319256 | None:intergenic |
AATGGAGATCCAATTTCCCT+TGG | 0.538520 | 3.1:+74318721 | MS.gene06847:CDS |
CTCCATTGAGCAATTGTGAA+AGG | 0.540021 | 3.1:-74317568 | None:intergenic |
GGAATGGTATCATCTCCATC+TGG | 0.544391 | 3.1:+74319339 | MS.gene06847:CDS |
ATTATGATAGGAACTTCCAT+TGG | 0.546307 | 3.1:-74318797 | None:intergenic |
ACCACCACCACCTCCAACAA+TGG | 0.549376 | 3.1:+74319015 | MS.gene06847:CDS |
ATACATGAAAGAAGATGAGA+AGG | 0.554354 | 3.1:-74317646 | None:intergenic |
GGTGGTCACAGCAGGTGGAA+TGG | 0.556637 | 3.1:+74317519 | MS.gene06847:intron |
AACAATGGTTCTGCATCAGT+TGG | 0.557664 | 3.1:+74319030 | MS.gene06847:CDS |
TTATTATGCAAAACACCAGA+TGG | 0.559997 | 3.1:-74319354 | None:intergenic |
AAAGACATGTTGTATGTTGT+GGG | 0.561732 | 3.1:-74317258 | None:intergenic |
AAAAGACATGTTGTATGTTG+TGG | 0.562174 | 3.1:-74317259 | None:intergenic |
AACAATACTGATCCAGAGGC+TGG | 0.566845 | 3.1:+74317947 | MS.gene06847:CDS |
TGAGTTTCGCGTTCAAGACA+AGG | 0.567509 | 3.1:+74317053 | MS.gene06847:CDS |
AGTTTGTTGTTATGCATCAG+AGG | 0.569252 | 3.1:-74318766 | None:intergenic |
ACAAATCGTGTCGAATCCAT+TGG | 0.573702 | 3.1:+74319303 | MS.gene06847:CDS |
TTGGTGCTTCTAATTCGGGA+TGG | 0.574820 | 3.1:+74318740 | MS.gene06847:CDS |
ATAACACTAGTAGTGTTGTT+GGG | 0.575929 | 3.1:+74317100 | MS.gene06847:CDS |
AACAAACTTGGAATGACCAA+TGG | 0.577256 | 3.1:+74318781 | MS.gene06847:CDS |
TAGTCATCATCAAATCAAAA+GGG | 0.580379 | 3.1:+74318117 | MS.gene06847:CDS |
CATGATTATCAAAGAATGAA+CGG | 0.581245 | 3.1:-74317191 | None:intergenic |
TGCAGAACCATTGTTGGAGG+TGG | 0.586637 | 3.1:-74319022 | None:intergenic |
GAGTTTGCATTGGAACAACA+AGG | 0.591725 | 3.1:-74318912 | None:intergenic |
ATACTGATCCAGAGGCTGGT+AGG | 0.593096 | 3.1:+74317951 | MS.gene06847:CDS |
TGGAAATGAATTCAGATACT+GGG | 0.603286 | 3.1:-74318830 | None:intergenic |
ACAAGGGGATTAAGTAAGAG+AGG | 0.605379 | 3.1:-74318895 | None:intergenic |
GTTTGCATTGGAACAACAAG+GGG | 0.608134 | 3.1:-74318910 | None:intergenic |
TCCCGAATTAGAAGCACCAA+GGG | 0.609726 | 3.1:-74318737 | None:intergenic |
CCTTGGGTAGGTTCAACACC+TGG | 0.615728 | 3.1:+74319192 | MS.gene06847:CDS |
TGGATGGTGGTTTCAATCTG+AGG | 0.616315 | 3.1:+74317912 | MS.gene06847:CDS |
TCCCCGTTCAAGAAAGCCTG+TGG | 0.619148 | 3.1:+74318063 | MS.gene06847:CDS |
GGTAGGTGCAGAAGAACAGA+TGG | 0.619651 | 3.1:+74317968 | MS.gene06847:CDS |
GGTCACAGCAGGTGGAATGG+CGG | 0.620189 | 3.1:+74317522 | MS.gene06847:intron |
TCCAAATGTTGCATCATCAA+GGG | 0.620644 | 3.1:+74319416 | MS.gene06847:CDS |
CTCCAATCTGAGAAACCAAG+AGG | 0.625201 | 3.1:+74318934 | MS.gene06847:CDS |
GAATGAAAAGGGGCTTGGAG+TGG | 0.630089 | 3.1:+74318692 | MS.gene06847:intron |
TGGCACTTCAGGGACAGGAA+TGG | 0.631431 | 3.1:+74319323 | MS.gene06847:CDS |
ACTTCAGCTAGTGGACCACC+AGG | 0.635831 | 3.1:-74319210 | None:intergenic |
TCCACAGGCTTTCTTGAACG+GGG | 0.635923 | 3.1:-74318064 | None:intergenic |
AGGCTTCAAATAAGCAACCA+AGG | 0.637520 | 3.1:+74318302 | MS.gene06847:CDS |
TAGGAACAATACTGATCCAG+AGG | 0.641405 | 3.1:+74317943 | MS.gene06847:CDS |
TGATGCAGAACCATTGTTGG+AGG | 0.644016 | 3.1:-74319025 | None:intergenic |
CATTGAGCAATTGTGAAAGG+AGG | 0.644246 | 3.1:-74317565 | None:intergenic |
ATCCCGAATTAGAAGCACCA+AGG | 0.660495 | 3.1:-74318738 | None:intergenic |
AATCCAGCACAACCTTGGGT+AGG | 0.661395 | 3.1:+74319180 | MS.gene06847:CDS |
AGTTTGCATTGGAACAACAA+GGG | 0.661506 | 3.1:-74318911 | None:intergenic |
CCAGGTGTTGAACCTACCCA+AGG | 0.666817 | 3.1:-74319192 | None:intergenic |
TTGGTCTACTGCAGAGACAG+TGG | 0.671251 | 3.1:+74318975 | MS.gene06847:CDS |
TCACTTGATCTATCAATGGG+AGG | 0.680795 | 3.1:+74319069 | MS.gene06847:CDS |
TGGGTAGGTTCAACACCTGG+TGG | 0.687244 | 3.1:+74319195 | MS.gene06847:CDS |
TGTGAAAGACATATGCATAG+AGG | 0.723539 | 3.1:+74318037 | MS.gene06847:CDS |
GATTATCAAAGAATGAACGG+TGG | 0.727234 | 3.1:-74317188 | None:intergenic |
AATGCTATCATTGATAATGG+CGG | 0.749635 | 3.1:+74317309 | MS.gene06847:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TGAAAATATGAAATTAATTA+AGG | - | chr3.1:74317696-74317715 | None:intergenic | 10.0% |
!! | ATATATAGAAAAATAAGTAG+TGG | + | chr3.1:74317423-74317442 | MS.gene06847:intron | 15.0% |
!!! | AAAAAAAATCAAGCTTTATT+TGG | - | chr3.1:74318582-74318601 | None:intergenic | 15.0% |
!!! | TAAATAAATGCATTGTTTTA+TGG | + | chr3.1:74318622-74318641 | MS.gene06847:intron | 15.0% |
!! | AAAAAAGCAGAAAAAGTTAA+TGG | - | chr3.1:74317745-74317764 | None:intergenic | 20.0% |
!! | AAAAAGCAGAAAAAGTTAAT+GGG | - | chr3.1:74317744-74317763 | None:intergenic | 20.0% |
!! | ATGATTAAACTTATTGAGTA+AGG | - | chr3.1:74319457-74319476 | None:intergenic | 20.0% |
!!! | TTTCATGTTTTGTTTTGATT+TGG | + | chr3.1:74318546-74318565 | MS.gene06847:intron | 20.0% |
!!! | TTTCTAGTTTGTTATTGATT+TGG | + | chr3.1:74318663-74318682 | MS.gene06847:intron | 20.0% |
! | AAACACAAACTAACCTTTAA+GGG | - | chr3.1:74317385-74317404 | None:intergenic | 25.0% |
! | AAGGTAAATAGAATGAAAAG+TGG | - | chr3.1:74317801-74317820 | None:intergenic | 25.0% |
! | AATCCAACTACAAGAAAATA+TGG | + | chr3.1:74318199-74318218 | MS.gene06847:CDS | 25.0% |
! | ACAAAACATGAAAGTGAATA+AGG | - | chr3.1:74318539-74318558 | None:intergenic | 25.0% |
! | ATAGTCATCATCAAATCAAA+AGG | + | chr3.1:74318116-74318135 | MS.gene06847:CDS | 25.0% |
! | ATATTGAGTTTGACTAAATC+AGG | + | chr3.1:74318378-74318397 | MS.gene06847:intron | 25.0% |
! | CATGATTATCAAAGAATGAA+CGG | - | chr3.1:74317194-74317213 | None:intergenic | 25.0% |
! | GTGAAAAGGTTGAAAATTTA+AGG | - | chr3.1:74317340-74317359 | None:intergenic | 25.0% |
! | TAAACACAAACTAACCTTTA+AGG | - | chr3.1:74317386-74317405 | None:intergenic | 25.0% |
! | TACAAACTTTAGACTCAAAA+TGG | - | chr3.1:74317772-74317791 | None:intergenic | 25.0% |
! | TAGTCATCATCAAATCAAAA+GGG | + | chr3.1:74318117-74318136 | MS.gene06847:CDS | 25.0% |
! | TATGATTTACAAGTACTTGA+TGG | + | chr3.1:74317609-74317628 | MS.gene06847:CDS | 25.0% |
! | TATGCAAAGAAAATGAAGAT+TGG | - | chr3.1:74318270-74318289 | None:intergenic | 25.0% |
! | TTTAAGAGTGAATTTCATAG+AGG | - | chr3.1:74318606-74318625 | None:intergenic | 25.0% |
! | TTTGGTGAATTGAATGAAAA+GGG | + | chr3.1:74318681-74318700 | MS.gene06847:intron | 25.0% |
!! | ATTTGGTGAATTGAATGAAA+AGG | + | chr3.1:74318680-74318699 | MS.gene06847:intron | 25.0% |
!! | TATTTTCTTGTAGTTGGATT+AGG | - | chr3.1:74318199-74318218 | None:intergenic | 25.0% |
!!! | GTTTTATGGTGTTAGTATTA+TGG | + | chr3.1:74318636-74318655 | MS.gene06847:intron | 25.0% |
!!! | TGTCTTTGTTTGTTTTGATT+TGG | + | chr3.1:74318508-74318527 | MS.gene06847:intron | 25.0% |
!!! | TTGTTGTTGGTTTTTTTTGT+AGG | - | chr3.1:74317081-74317100 | None:intergenic | 25.0% |
AAAAGACATGTTGTATGTTG+TGG | - | chr3.1:74317262-74317281 | None:intergenic | 30.0% | |
AAAGACATGTTGTATGTTGT+GGG | - | chr3.1:74317261-74317280 | None:intergenic | 30.0% | |
AAAGCAACACATGATGAAAA+AGG | - | chr3.1:74317846-74317865 | None:intergenic | 30.0% | |
AATAACACTAGTAGTGTTGT+TGG | + | chr3.1:74317099-74317118 | MS.gene06847:CDS | 30.0% | |
ACAAAGACATAGTACATGTT+TGG | - | chr3.1:74318497-74318516 | None:intergenic | 30.0% | |
AGTTCAGAACTGTTATATAG+TGG | - | chr3.1:74318853-74318872 | None:intergenic | 30.0% | |
ATACAGATATAAACTCACCT+TGG | - | chr3.1:74318322-74318341 | None:intergenic | 30.0% | |
ATACATGAAAGAAGATGAGA+AGG | - | chr3.1:74317649-74317668 | None:intergenic | 30.0% | |
ATTAAGGAAGAAGAGAGAAA+AGG | - | chr3.1:74317680-74317699 | None:intergenic | 30.0% | |
ATTATGATAGGAACTTCCAT+TGG | - | chr3.1:74318800-74318819 | None:intergenic | 30.0% | |
CTAAAATAGCATTCTCAAGT+TGG | + | chr3.1:74319154-74319173 | MS.gene06847:CDS | 30.0% | |
GAAAATGAAGATTGGAGATA+AGG | - | chr3.1:74318262-74318281 | None:intergenic | 30.0% | |
GAAGAACAGATGGTAAAAAA+TGG | + | chr3.1:74317978-74317997 | MS.gene06847:CDS | 30.0% | |
GCTAATGCTATCATTGATAA+TGG | + | chr3.1:74317306-74317325 | MS.gene06847:CDS | 30.0% | |
TCAATGAAACTAAAACCTCT+TGG | - | chr3.1:74318952-74318971 | None:intergenic | 30.0% | |
TCATCACTTGATCTATCAAT+GGG | + | chr3.1:74319066-74319085 | MS.gene06847:CDS | 30.0% | |
TGATAGATCAAGTGATGAAA+GGG | - | chr3.1:74319064-74319083 | None:intergenic | 30.0% | |
TGGAAATGAATTCAGATACT+GGG | - | chr3.1:74318833-74318852 | None:intergenic | 30.0% | |
TTAAGGAAGAAGAGAGAAAA+GGG | - | chr3.1:74317679-74317698 | None:intergenic | 30.0% | |
TTATTATGCAAAACACCAGA+TGG | - | chr3.1:74319357-74319376 | None:intergenic | 30.0% | |
TTCATCACTTGATCTATCAA+TGG | + | chr3.1:74319065-74319084 | MS.gene06847:CDS | 30.0% | |
TTGATAGATCAAGTGATGAA+AGG | - | chr3.1:74319065-74319084 | None:intergenic | 30.0% | |
TTGGTGAATTGAATGAAAAG+GGG | + | chr3.1:74318682-74318701 | MS.gene06847:intron | 30.0% | |
TTTGTCATTGAATCAATGTG+TGG | + | chr3.1:74317820-74317839 | MS.gene06847:intron | 30.0% | |
! | AACATACAACATGTCTTTTG+GGG | + | chr3.1:74317263-74317282 | MS.gene06847:CDS | 30.0% |
! | ACAACATACAACATGTCTTT+TGG | + | chr3.1:74317261-74317280 | MS.gene06847:CDS | 30.0% |
! | ACTACTAGTGTTATTGTTGT+TGG | - | chr3.1:74317094-74317113 | None:intergenic | 30.0% |
! | ATAACACTAGTAGTGTTGTT+GGG | + | chr3.1:74317100-74317119 | MS.gene06847:CDS | 30.0% |
! | CAACATACAACATGTCTTTT+GGG | + | chr3.1:74317262-74317281 | MS.gene06847:CDS | 30.0% |
! | GATCCATATTTTCTTGTAGT+TGG | - | chr3.1:74318205-74318224 | None:intergenic | 30.0% |
! | GGATTCAGTGTTATTATGAT+AGG | - | chr3.1:74318812-74318831 | None:intergenic | 30.0% |
! | TGATTTTGTTGAATCCCTTA+AGG | + | chr3.1:74318410-74318429 | MS.gene06847:intron | 30.0% |
!! | AATGCTATCATTGATAATGG+CGG | + | chr3.1:74317309-74317328 | MS.gene06847:CDS | 30.0% |
!! | CACATTGATTCAATGACAAA+AGG | - | chr3.1:74317820-74317839 | None:intergenic | 30.0% |
!! | CTTTCACAGTACTTGTTATT+AGG | - | chr3.1:74318025-74318044 | None:intergenic | 30.0% |
!!! | ACTTGTGTTTTTTGTGTTTG+TGG | + | chr3.1:74317498-74317517 | MS.gene06847:intron | 30.0% |
!!! | GTTTTAGTTTCATTGATGCT+TGG | + | chr3.1:74318956-74318975 | MS.gene06847:CDS | 30.0% |
AACAAACTTGGAATGACCAA+TGG | + | chr3.1:74318781-74318800 | MS.gene06847:CDS | 35.0% | |
AAGATTGGAGATAAGGATGA+AGG | - | chr3.1:74318255-74318274 | None:intergenic | 35.0% | |
AGATTGGAGATAAGGATGAA+GGG | - | chr3.1:74318254-74318273 | None:intergenic | 35.0% | |
AGTTTGCATTGGAACAACAA+GGG | - | chr3.1:74318914-74318933 | None:intergenic | 35.0% | |
CTGATGCATAACAACAAACT+TGG | + | chr3.1:74318769-74318788 | MS.gene06847:CDS | 35.0% | |
GAAGCAGAAATGTTGTGAAA+AGG | - | chr3.1:74317354-74317373 | None:intergenic | 35.0% | |
GATTATCAAAGAATGAACGG+TGG | - | chr3.1:74317191-74317210 | None:intergenic | 35.0% | |
GGATTAAGTAAGAGAGGAAA+GGG | - | chr3.1:74318892-74318911 | None:intergenic | 35.0% | |
GGGATTCAACAAAATCACAA+TGG | - | chr3.1:74318407-74318426 | None:intergenic | 35.0% | |
GTGGAAATGAATTCAGATAC+TGG | - | chr3.1:74318834-74318853 | None:intergenic | 35.0% | |
TCCAAATGTTGCATCATCAA+GGG | + | chr3.1:74319416-74319435 | MS.gene06847:CDS | 35.0% | |
TGTGAAAGACATATGCATAG+AGG | + | chr3.1:74318037-74318056 | MS.gene06847:CDS | 35.0% | |
TTAGAAGATCCAAGCCTTAA+GGG | - | chr3.1:74318427-74318446 | None:intergenic | 35.0% | |
TTATTTGTGTGAAGTTCCAC+AGG | - | chr3.1:74318082-74318101 | None:intergenic | 35.0% | |
TTTGCATAATAGCAGCTTTG+AGG | + | chr3.1:74318282-74318301 | MS.gene06847:CDS | 35.0% | |
! | ACATACAACATGTCTTTTGG+GGG | + | chr3.1:74317264-74317283 | MS.gene06847:CDS | 35.0% |
! | GCTTCATTTTCTGATAGTAG+TGG | + | chr3.1:74319384-74319403 | MS.gene06847:CDS | 35.0% |
! | TCAATCTGAGGCTATCAAAT+AGG | + | chr3.1:74317924-74317943 | MS.gene06847:CDS | 35.0% |
! | TTTCTTGTAGTTGGATTAGG+AGG | - | chr3.1:74318196-74318215 | None:intergenic | 35.0% |
!! | AGAATTTGTTGCATCACTGA+TGG | - | chr3.1:74319259-74319278 | None:intergenic | 35.0% |
!! | AGTTTGTTGTTATGCATCAG+AGG | - | chr3.1:74318769-74318788 | None:intergenic | 35.0% |
!!! | TATCCTTGTTTTTGAAGCAG+TGG | + | chr3.1:74317892-74317911 | MS.gene06847:intron | 35.0% |
!!! | TGTGTTTTTTGTGTTTGTGG+TGG | + | chr3.1:74317501-74317520 | MS.gene06847:intron | 35.0% |
AACCTCTTGGTTTCTCAGAT+TGG | - | chr3.1:74318939-74318958 | None:intergenic | 40.0% | |
AACTGATGCAGAACCATTGT+TGG | - | chr3.1:74319031-74319050 | None:intergenic | 40.0% | |
AATGGAGATCCAATTTCCCT+TGG | + | chr3.1:74318721-74318740 | MS.gene06847:CDS | 40.0% | |
ACAAATCGTGTCGAATCCAT+TGG | + | chr3.1:74319303-74319322 | MS.gene06847:CDS | 40.0% | |
ACAAGGGGATTAAGTAAGAG+AGG | - | chr3.1:74318898-74318917 | None:intergenic | 40.0% | |
AGGCTTCAAATAAGCAACCA+AGG | + | chr3.1:74318302-74318321 | MS.gene06847:CDS | 40.0% | |
CATCCACTGCTTCAAAAACA+AGG | - | chr3.1:74317898-74317917 | None:intergenic | 40.0% | |
CATTGAGCAATTGTGAAAGG+AGG | - | chr3.1:74317568-74317587 | None:intergenic | 40.0% | |
CTCCATTGAGCAATTGTGAA+AGG | - | chr3.1:74317571-74317590 | None:intergenic | 40.0% | |
CTCCTTTCACAATTGCTCAA+TGG | + | chr3.1:74317566-74317585 | MS.gene06847:CDS | 40.0% | |
CTGATGGAAGTAACATTGCT+TGG | - | chr3.1:74319243-74319262 | None:intergenic | 40.0% | |
CTTAGAAGATCCAAGCCTTA+AGG | - | chr3.1:74318428-74318447 | None:intergenic | 40.0% | |
GAAAGAAGATGAGAAGGAAC+AGG | - | chr3.1:74317643-74317662 | None:intergenic | 40.0% | |
GAATTGAATGAAAAGGGGCT+TGG | + | chr3.1:74318687-74318706 | MS.gene06847:intron | 40.0% | |
GAGTTTGCATTGGAACAACA+AGG | - | chr3.1:74318915-74318934 | None:intergenic | 40.0% | |
GATTGGAGATAAGGATGAAG+GGG | - | chr3.1:74318253-74318272 | None:intergenic | 40.0% | |
GGGATTAAGTAAGAGAGGAA+AGG | - | chr3.1:74318893-74318912 | None:intergenic | 40.0% | |
GTCCAAATGTTGCATCATCA+AGG | + | chr3.1:74319415-74319434 | MS.gene06847:CDS | 40.0% | |
GTTTGCATTGGAACAACAAG+GGG | - | chr3.1:74318913-74318932 | None:intergenic | 40.0% | |
TAGGAACAATACTGATCCAG+AGG | + | chr3.1:74317943-74317962 | MS.gene06847:CDS | 40.0% | |
TCACTTGATCTATCAATGGG+AGG | + | chr3.1:74319069-74319088 | MS.gene06847:CDS | 40.0% | |
TCAGATTGGAGAGTTTGCAT+TGG | - | chr3.1:74318925-74318944 | None:intergenic | 40.0% | |
TTGTTGAATCCCTTAAGGCT+TGG | + | chr3.1:74318415-74318434 | MS.gene06847:intron | 40.0% | |
! | AACAATGGTTCTGCATCAGT+TGG | + | chr3.1:74319030-74319049 | MS.gene06847:CDS | 40.0% |
! | CTAACCTTTAAGGGTTGTGT+TGG | - | chr3.1:74317376-74317395 | None:intergenic | 40.0% |
! | TTCACTGCCTGATTTTACTG+TGG | + | chr3.1:74318165-74318184 | MS.gene06847:CDS | 40.0% |
!! | TTAGAAGCACCAAGGGAAAT+TGG | - | chr3.1:74318733-74318752 | None:intergenic | 40.0% |
!! | TTCCCTTGGTGCTTCTAATT+CGG | + | chr3.1:74318735-74318754 | MS.gene06847:CDS | 40.0% |
!!! | CTTGTTTTTGAAGCAGTGGA+TGG | + | chr3.1:74317896-74317915 | MS.gene06847:intron | 40.0% |
AACAATACTGATCCAGAGGC+TGG | + | chr3.1:74317947-74317966 | MS.gene06847:CDS | 45.0% | |
ATGGCGGCTTCAATAGGAAT+AGG | + | chr3.1:74317538-74317557 | MS.gene06847:CDS | 45.0% | |
CTCCAATCTGAGAAACCAAG+AGG | + | chr3.1:74318934-74318953 | MS.gene06847:CDS | 45.0% | |
GCTGTTGATGCTGAAGGTTA+TGG | + | chr3.1:74317234-74317253 | MS.gene06847:CDS | 45.0% | |
GCTTCCAACACAACCCTTAA+AGG | + | chr3.1:74317369-74317388 | MS.gene06847:CDS | 45.0% | |
GGAACAGCCACAGTAAAATC+AGG | - | chr3.1:74318175-74318194 | None:intergenic | 45.0% | |
GGAATGGTATCATCTCCATC+TGG | + | chr3.1:74319339-74319358 | MS.gene06847:CDS | 45.0% | |
GTCCACTAGCTGAAGTTCTA+AGG | + | chr3.1:74319217-74319236 | MS.gene06847:CDS | 45.0% | |
GTTCCACAGGCTTTCTTGAA+CGG | - | chr3.1:74318069-74318088 | None:intergenic | 45.0% | |
TCGAATCCATTGGCACTTCA+GGG | + | chr3.1:74319313-74319332 | MS.gene06847:CDS | 45.0% | |
TGAGTTTCGCGTTCAAGACA+AGG | + | chr3.1:74317053-74317072 | MS.gene06847:CDS | 45.0% | |
TGATGCAGAACCATTGTTGG+AGG | - | chr3.1:74319028-74319047 | None:intergenic | 45.0% | |
TGGCGGCTTCAATAGGAATA+GGG | + | chr3.1:74317539-74317558 | MS.gene06847:CDS | 45.0% | |
TTCCACAGGCTTTCTTGAAC+GGG | - | chr3.1:74318068-74318087 | None:intergenic | 45.0% | |
! | CACTAGTAGTGTTGTTGGGT+CGG | + | chr3.1:74317104-74317123 | MS.gene06847:CDS | 45.0% |
! | TGGATGGTGGTTTCAATCTG+AGG | + | chr3.1:74317912-74317931 | MS.gene06847:CDS | 45.0% |
! | TTGGTGCTTCTAATTCGGGA+TGG | + | chr3.1:74318740-74318759 | MS.gene06847:CDS | 45.0% |
!! | ATCCCGAATTAGAAGCACCA+AGG | - | chr3.1:74318741-74318760 | None:intergenic | 45.0% |
!! | GCCCTTGATGATGCAACATT+TGG | - | chr3.1:74319420-74319439 | None:intergenic | 45.0% |
!! | TCCCGAATTAGAAGCACCAA+GGG | - | chr3.1:74318740-74318759 | None:intergenic | 45.0% |
!! | TCCCTTGGTGCTTCTAATTC+GGG | + | chr3.1:74318736-74318755 | MS.gene06847:CDS | 45.0% |
!!! | GTTTTTGAAGCAGTGGATGG+TGG | + | chr3.1:74317899-74317918 | MS.gene06847:intron | 45.0% |
AATCCAGCACAACCTTGGGT+AGG | + | chr3.1:74319180-74319199 | MS.gene06847:CDS | 50.0% | |
AGAACCATTGTTGGAGGTGG+TGG | - | chr3.1:74319022-74319041 | None:intergenic | 50.0% | |
ATACTGATCCAGAGGCTGGT+AGG | + | chr3.1:74317951-74317970 | MS.gene06847:CDS | 50.0% | |
GAATGAAAAGGGGCTTGGAG+TGG | + | chr3.1:74318692-74318711 | MS.gene06847:intron | 50.0% | |
GAGATAAGGATGAAGGGGAG+TGG | - | chr3.1:74318248-74318267 | None:intergenic | 50.0% | |
GCTCAATCCAGCACAACCTT+GGG | + | chr3.1:74319176-74319195 | MS.gene06847:CDS | 50.0% | |
GGCCTTAGAACTTCAGCTAG+TGG | - | chr3.1:74319222-74319241 | None:intergenic | 50.0% | |
GGTAGGTGCAGAAGAACAGA+TGG | + | chr3.1:74317968-74317987 | MS.gene06847:CDS | 50.0% | |
GTCGAATCCATTGGCACTTC+AGG | + | chr3.1:74319312-74319331 | MS.gene06847:CDS | 50.0% | |
TCCACAGGCTTTCTTGAACG+GGG | - | chr3.1:74318067-74318086 | None:intergenic | 50.0% | |
TCTGCTGCTGTTGATGCTGA+AGG | + | chr3.1:74317228-74317247 | MS.gene06847:CDS | 50.0% | |
TGCAGAACCATTGTTGGAGG+TGG | - | chr3.1:74319025-74319044 | None:intergenic | 50.0% | |
TTGGTCTACTGCAGAGACAG+TGG | + | chr3.1:74318975-74318994 | MS.gene06847:CDS | 50.0% | |
ACCACCACCACCTCCAACAA+TGG | + | chr3.1:74319015-74319034 | MS.gene06847:CDS | 55.0% | |
CCTTGGGTAGGTTCAACACC+TGG | + | chr3.1:74319192-74319211 | MS.gene06847:CDS | 55.0% | |
GAACCTACCCAAGGTTGTGC+TGG | - | chr3.1:74319186-74319205 | None:intergenic | 55.0% | |
GGCTCAATCCAGCACAACCT+TGG | + | chr3.1:74319175-74319194 | MS.gene06847:CDS | 55.0% | |
GGCTTGGAGTGGATGCTGAA+TGG | + | chr3.1:74318703-74318722 | MS.gene06847:CDS | 55.0% | |
GGGGGTGATTCTTCTGCTCT+AGG | + | chr3.1:74317282-74317301 | MS.gene06847:CDS | 55.0% | |
GGTGGAATGGCGGCTTCAAT+AGG | + | chr3.1:74317532-74317551 | MS.gene06847:CDS | 55.0% | |
GTGTTTGTGGTGGTCACAGC+AGG | + | chr3.1:74317511-74317530 | MS.gene06847:intron | 55.0% | |
TCCATTGGCACTTCAGGGAC+AGG | + | chr3.1:74319318-74319337 | MS.gene06847:CDS | 55.0% | |
TCCCCGTTCAAGAAAGCCTG+TGG | + | chr3.1:74318063-74318082 | MS.gene06847:CDS | 55.0% | |
TGGCACTTCAGGGACAGGAA+TGG | + | chr3.1:74319323-74319342 | MS.gene06847:CDS | 55.0% | |
TGGGTAGGTTCAACACCTGG+TGG | + | chr3.1:74319195-74319214 | MS.gene06847:CDS | 55.0% | |
TTTGTGGTGGTCACAGCAGG+TGG | + | chr3.1:74317514-74317533 | MS.gene06847:intron | 55.0% | |
! | ACCATTGTTGGAGGTGGTGG+TGG | - | chr3.1:74319019-74319038 | None:intergenic | 55.0% |
! | ACTTCAGCTAGTGGACCACC+AGG | - | chr3.1:74319213-74319232 | None:intergenic | 55.0% |
! | TCCTGTCCCTGAAGTGCCAA+TGG | - | chr3.1:74319322-74319341 | None:intergenic | 55.0% |
!! | ATTGTTGGAGGTGGTGGTGG+TGG | - | chr3.1:74319016-74319035 | None:intergenic | 55.0% |
!! | CCAGGTGTTGAACCTACCCA+AGG | - | chr3.1:74319195-74319214 | None:intergenic | 55.0% |
!! | GGGTCGGTGCAGAGTTTTGA+AGG | + | chr3.1:74317120-74317139 | MS.gene06847:CDS | 55.0% |
CTTCTGCACCTACCAGCCTC+TGG | - | chr3.1:74317962-74317981 | None:intergenic | 60.0% | |
GGTCACAGCAGGTGGAATGG+CGG | + | chr3.1:74317522-74317541 | MS.gene06847:intron | 60.0% | |
GGTGGTCACAGCAGGTGGAA+TGG | + | chr3.1:74317519-74317538 | MS.gene06847:intron | 60.0% | |
!! | GGAGGTGGTGGTGGTGGTGT+TGG | - | chr3.1:74319010-74319029 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 74317048 | 74319494 | 74317048 | ID=MS.gene06847 |
chr3.1 | mRNA | 74317048 | 74319494 | 74317048 | ID=MS.gene06847.t1;Parent=MS.gene06847 |
chr3.1 | exon | 74317048 | 74317390 | 74317048 | ID=MS.gene06847.t1.exon1;Parent=MS.gene06847.t1 |
chr3.1 | CDS | 74317048 | 74317390 | 74317048 | ID=cds.MS.gene06847.t1;Parent=MS.gene06847.t1 |
chr3.1 | exon | 74317530 | 74317664 | 74317530 | ID=MS.gene06847.t1.exon2;Parent=MS.gene06847.t1 |
chr3.1 | CDS | 74317530 | 74317664 | 74317530 | ID=cds.MS.gene06847.t1;Parent=MS.gene06847.t1 |
chr3.1 | exon | 74317912 | 74318323 | 74317912 | ID=MS.gene06847.t1.exon3;Parent=MS.gene06847.t1 |
chr3.1 | CDS | 74317912 | 74318323 | 74317912 | ID=cds.MS.gene06847.t1;Parent=MS.gene06847.t1 |
chr3.1 | exon | 74318702 | 74319494 | 74318702 | ID=MS.gene06847.t1.exon4;Parent=MS.gene06847.t1 |
chr3.1 | CDS | 74318702 | 74319494 | 74318702 | ID=cds.MS.gene06847.t1;Parent=MS.gene06847.t1 |
Gene Sequence |
Protein sequence |