AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene06847


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06847.t1 MTR_3g092330 91.429 560 28 7 1 560 1 540 0.0 930
MS.gene06847.t1 MTR_1g017490 50.704 142 42 4 103 218 117 256 1.44e-33 135
MS.gene06847.t1 MTR_1g017490 54.331 127 28 4 116 218 3 123 4.55e-33 133
MS.gene06847.t1 MTR_0001s0490 53.153 111 35 2 128 221 25 135 3.01e-32 127
MS.gene06847.t1 MTR_5g027030 57.000 100 35 2 126 218 14 112 6.79e-30 120
MS.gene06847.t1 MTR_8g020560 49.541 109 37 2 129 219 12 120 1.83e-29 119
MS.gene06847.t1 MTR_2g041430 50.000 114 35 3 128 219 7 120 3.35e-29 119
MS.gene06847.t1 MTR_2g041430 50.000 114 35 3 128 219 7 120 3.88e-29 119
MS.gene06847.t1 MTR_2g041430 50.000 114 35 3 128 219 7 120 4.15e-29 119
MS.gene06847.t1 MTR_7g104050 44.604 139 50 3 109 225 60 193 8.62e-29 118
MS.gene06847.t1 MTR_4g125490 49.153 118 42 3 128 227 9 126 1.00e-28 119
MS.gene06847.t1 MTR_7g104050 44.604 139 50 3 109 225 60 193 1.26e-28 118
MS.gene06847.t1 MTR_8g035910 46.218 119 51 3 127 233 48 165 3.38e-23 102
MS.gene06847.t1 MTR_8g035910 56.667 60 25 1 154 212 276 335 7.41e-14 74.3
MS.gene06847.t1 MTR_8g035640 52.542 59 27 1 155 212 31 89 1.59e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06847.t1 AT4G37740 54.701 117 35 3 128 227 164 279 4.26e-33 133
MS.gene06847.t1 AT5G53660 56.140 114 46 2 126 235 57 170 1.19e-32 129
MS.gene06847.t1 AT2G22840 54.310 116 35 2 128 226 133 247 2.94e-31 127
MS.gene06847.t1 AT3G13960 51.327 113 37 2 124 218 12 124 6.46e-30 122
MS.gene06847.t1 AT4G24150 41.718 163 64 5 102 242 90 243 3.86e-29 120
MS.gene06847.t1 AT4G24150 41.718 163 64 5 102 242 128 281 5.98e-29 120
MS.gene06847.t1 AT2G36400 52.137 117 35 1 129 224 77 193 1.81e-28 117
MS.gene06847.t1 AT3G52910 49.107 112 35 1 129 218 83 194 2.64e-26 111
MS.gene06847.t1 AT4G24150 36.170 188 64 5 102 242 128 306 1.28e-25 110
MS.gene06847.t1 AT2G06200 42.759 145 48 5 102 216 23 162 1.48e-25 107
MS.gene06847.t1 AT2G06200 46.610 118 34 3 128 216 6 123 2.24e-25 105
MS.gene06847.t1 AT2G45480 44.444 108 42 2 126 215 22 129 8.45e-19 87.8
MS.gene06847.t1 AT2G45480 44.444 108 42 2 126 215 20 127 5.06e-18 87.0
MS.gene06847.t1 AT2G45480 50.000 74 32 3 154 227 287 355 2.57e-13 72.4
MS.gene06847.t1 AT2G45480 44.444 108 42 2 126 215 22 129 5.13e-18 87.0
MS.gene06847.t1 AT2G45480 50.000 74 32 3 154 227 289 357 2.52e-13 72.8
MS.gene06847.t1 AT2G06200 72.727 44 10 1 175 216 8 51 5.73e-16 76.3

Find 125 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAACACAAACTAACCTTTA+AGG 0.146408 3.1:-74317383 None:intergenic
GTGAAAAGGTTGAAAATTTA+AGG 0.152843 3.1:-74317337 None:intergenic
GCTTCCAACACAACCCTTAA+AGG 0.155280 3.1:+74317369 MS.gene06847:CDS
CTTTCACAGTACTTGTTATT+AGG 0.229946 3.1:-74318022 None:intergenic
GTCGAATCCATTGGCACTTC+AGG 0.255897 3.1:+74319312 MS.gene06847:CDS
TTCCCTTGGTGCTTCTAATT+CGG 0.262187 3.1:+74318735 MS.gene06847:CDS
ACAACATACAACATGTCTTT+TGG 0.266442 3.1:+74317261 MS.gene06847:CDS
AATCCAACTACAAGAAAATA+TGG 0.279540 3.1:+74318199 MS.gene06847:CDS
TCCCTTGGTGCTTCTAATTC+GGG 0.284487 3.1:+74318736 MS.gene06847:CDS
TTAGAAGCACCAAGGGAAAT+TGG 0.307978 3.1:-74318730 None:intergenic
AACCTCTTGGTTTCTCAGAT+TGG 0.311180 3.1:-74318936 None:intergenic
GCCCTTGATGATGCAACATT+TGG 0.323926 3.1:-74319417 None:intergenic
TATGATTTACAAGTACTTGA+TGG 0.325776 3.1:+74317609 MS.gene06847:CDS
TCAATCTGAGGCTATCAAAT+AGG 0.341073 3.1:+74317924 MS.gene06847:CDS
GTGGAAATGAATTCAGATAC+TGG 0.360987 3.1:-74318831 None:intergenic
AAACACAAACTAACCTTTAA+GGG 0.361293 3.1:-74317382 None:intergenic
ACTACTAGTGTTATTGTTGT+TGG 0.363306 3.1:-74317091 None:intergenic
TTCCACAGGCTTTCTTGAAC+GGG 0.370446 3.1:-74318065 None:intergenic
GTCCACTAGCTGAAGTTCTA+AGG 0.379508 3.1:+74319217 MS.gene06847:CDS
ATGATTAAACTTATTGAGTA+AGG 0.386331 3.1:-74319454 None:intergenic
GCTAATGCTATCATTGATAA+TGG 0.393717 3.1:+74317306 MS.gene06847:CDS
ATGGCGGCTTCAATAGGAAT+AGG 0.401179 3.1:+74317538 MS.gene06847:CDS
TTCATCACTTGATCTATCAA+TGG 0.407184 3.1:+74319065 MS.gene06847:CDS
GGATTCAGTGTTATTATGAT+AGG 0.409147 3.1:-74318809 None:intergenic
GCTGTTGATGCTGAAGGTTA+TGG 0.416004 3.1:+74317234 MS.gene06847:CDS
ATAGTCATCATCAAATCAAA+AGG 0.419333 3.1:+74318116 MS.gene06847:CDS
TTTGCATAATAGCAGCTTTG+AGG 0.429903 3.1:+74318282 MS.gene06847:CDS
CTTCTGCACCTACCAGCCTC+TGG 0.433695 3.1:-74317959 None:intergenic
GGTGGAATGGCGGCTTCAAT+AGG 0.433909 3.1:+74317532 MS.gene06847:CDS
ACCATTGTTGGAGGTGGTGG+TGG 0.435162 3.1:-74319016 None:intergenic
GAAAATGAAGATTGGAGATA+AGG 0.436913 3.1:-74318259 None:intergenic
CTCCTTTCACAATTGCTCAA+TGG 0.446940 3.1:+74317566 MS.gene06847:CDS
GGATTAAGTAAGAGAGGAAA+GGG 0.448727 3.1:-74318889 None:intergenic
ATTGTTGGAGGTGGTGGTGG+TGG 0.456677 3.1:-74319013 None:intergenic
TATGCAAAGAAAATGAAGAT+TGG 0.460286 3.1:-74318267 None:intergenic
GGCTCAATCCAGCACAACCT+TGG 0.462541 3.1:+74319175 MS.gene06847:CDS
AACTGATGCAGAACCATTGT+TGG 0.462885 3.1:-74319028 None:intergenic
GAAAGAAGATGAGAAGGAAC+AGG 0.467897 3.1:-74317640 None:intergenic
TCATCACTTGATCTATCAAT+GGG 0.468999 3.1:+74319066 MS.gene06847:CDS
CTGATGCATAACAACAAACT+TGG 0.470877 3.1:+74318769 MS.gene06847:CDS
TCCATTGGCACTTCAGGGAC+AGG 0.476778 3.1:+74319318 MS.gene06847:CDS
AAGATTGGAGATAAGGATGA+AGG 0.477847 3.1:-74318252 None:intergenic
CTAAAATAGCATTCTCAAGT+TGG 0.478113 3.1:+74319154 MS.gene06847:CDS
AATAACACTAGTAGTGTTGT+TGG 0.478175 3.1:+74317099 MS.gene06847:CDS
CTAACCTTTAAGGGTTGTGT+TGG 0.481457 3.1:-74317373 None:intergenic
GGAACAGCCACAGTAAAATC+AGG 0.486638 3.1:-74318172 None:intergenic
GCTCAATCCAGCACAACCTT+GGG 0.488726 3.1:+74319176 MS.gene06847:CDS
AGTTCAGAACTGTTATATAG+TGG 0.490372 3.1:-74318850 None:intergenic
TGATAGATCAAGTGATGAAA+GGG 0.490826 3.1:-74319061 None:intergenic
TCAATGAAACTAAAACCTCT+TGG 0.493104 3.1:-74318949 None:intergenic
TCTGCTGCTGTTGATGCTGA+AGG 0.494288 3.1:+74317228 MS.gene06847:CDS
GAGATAAGGATGAAGGGGAG+TGG 0.496353 3.1:-74318245 None:intergenic
GTCCAAATGTTGCATCATCA+AGG 0.496502 3.1:+74319415 MS.gene06847:CDS
AGATTGGAGATAAGGATGAA+GGG 0.498515 3.1:-74318251 None:intergenic
TTATTTGTGTGAAGTTCCAC+AGG 0.498667 3.1:-74318079 None:intergenic
TCGAATCCATTGGCACTTCA+GGG 0.500942 3.1:+74319313 MS.gene06847:CDS
AGAACCATTGTTGGAGGTGG+TGG 0.506509 3.1:-74319019 None:intergenic
GTTCCACAGGCTTTCTTGAA+CGG 0.508728 3.1:-74318066 None:intergenic
TTTCTTGTAGTTGGATTAGG+AGG 0.509981 3.1:-74318193 None:intergenic
GGCTTGGAGTGGATGCTGAA+TGG 0.510711 3.1:+74318703 MS.gene06847:CDS
CTGATGGAAGTAACATTGCT+TGG 0.510713 3.1:-74319240 None:intergenic
GATTGGAGATAAGGATGAAG+GGG 0.516351 3.1:-74318250 None:intergenic
GAACCTACCCAAGGTTGTGC+TGG 0.517275 3.1:-74319183 None:intergenic
TGGCGGCTTCAATAGGAATA+GGG 0.523564 3.1:+74317539 MS.gene06847:CDS
TCCTGTCCCTGAAGTGCCAA+TGG 0.523915 3.1:-74319319 None:intergenic
TCAGATTGGAGAGTTTGCAT+TGG 0.524106 3.1:-74318922 None:intergenic
GAATTGAATGAAAAGGGGCT+TGG 0.524945 3.1:+74318687 MS.gene06847:intron
CACTAGTAGTGTTGTTGGGT+CGG 0.525074 3.1:+74317104 MS.gene06847:CDS
GAAGCAGAAATGTTGTGAAA+AGG 0.532749 3.1:-74317351 None:intergenic
GGGATTAAGTAAGAGAGGAA+AGG 0.533228 3.1:-74318890 None:intergenic
GGCCTTAGAACTTCAGCTAG+TGG 0.534033 3.1:-74319219 None:intergenic
TTGATAGATCAAGTGATGAA+AGG 0.535432 3.1:-74319062 None:intergenic
AGAATTTGTTGCATCACTGA+TGG 0.536310 3.1:-74319256 None:intergenic
AATGGAGATCCAATTTCCCT+TGG 0.538520 3.1:+74318721 MS.gene06847:CDS
CTCCATTGAGCAATTGTGAA+AGG 0.540021 3.1:-74317568 None:intergenic
GGAATGGTATCATCTCCATC+TGG 0.544391 3.1:+74319339 MS.gene06847:CDS
ATTATGATAGGAACTTCCAT+TGG 0.546307 3.1:-74318797 None:intergenic
ACCACCACCACCTCCAACAA+TGG 0.549376 3.1:+74319015 MS.gene06847:CDS
ATACATGAAAGAAGATGAGA+AGG 0.554354 3.1:-74317646 None:intergenic
GGTGGTCACAGCAGGTGGAA+TGG 0.556637 3.1:+74317519 MS.gene06847:intron
AACAATGGTTCTGCATCAGT+TGG 0.557664 3.1:+74319030 MS.gene06847:CDS
TTATTATGCAAAACACCAGA+TGG 0.559997 3.1:-74319354 None:intergenic
AAAGACATGTTGTATGTTGT+GGG 0.561732 3.1:-74317258 None:intergenic
AAAAGACATGTTGTATGTTG+TGG 0.562174 3.1:-74317259 None:intergenic
AACAATACTGATCCAGAGGC+TGG 0.566845 3.1:+74317947 MS.gene06847:CDS
TGAGTTTCGCGTTCAAGACA+AGG 0.567509 3.1:+74317053 MS.gene06847:CDS
AGTTTGTTGTTATGCATCAG+AGG 0.569252 3.1:-74318766 None:intergenic
ACAAATCGTGTCGAATCCAT+TGG 0.573702 3.1:+74319303 MS.gene06847:CDS
TTGGTGCTTCTAATTCGGGA+TGG 0.574820 3.1:+74318740 MS.gene06847:CDS
ATAACACTAGTAGTGTTGTT+GGG 0.575929 3.1:+74317100 MS.gene06847:CDS
AACAAACTTGGAATGACCAA+TGG 0.577256 3.1:+74318781 MS.gene06847:CDS
TAGTCATCATCAAATCAAAA+GGG 0.580379 3.1:+74318117 MS.gene06847:CDS
CATGATTATCAAAGAATGAA+CGG 0.581245 3.1:-74317191 None:intergenic
TGCAGAACCATTGTTGGAGG+TGG 0.586637 3.1:-74319022 None:intergenic
GAGTTTGCATTGGAACAACA+AGG 0.591725 3.1:-74318912 None:intergenic
ATACTGATCCAGAGGCTGGT+AGG 0.593096 3.1:+74317951 MS.gene06847:CDS
TGGAAATGAATTCAGATACT+GGG 0.603286 3.1:-74318830 None:intergenic
ACAAGGGGATTAAGTAAGAG+AGG 0.605379 3.1:-74318895 None:intergenic
GTTTGCATTGGAACAACAAG+GGG 0.608134 3.1:-74318910 None:intergenic
TCCCGAATTAGAAGCACCAA+GGG 0.609726 3.1:-74318737 None:intergenic
CCTTGGGTAGGTTCAACACC+TGG 0.615728 3.1:+74319192 MS.gene06847:CDS
TGGATGGTGGTTTCAATCTG+AGG 0.616315 3.1:+74317912 MS.gene06847:CDS
TCCCCGTTCAAGAAAGCCTG+TGG 0.619148 3.1:+74318063 MS.gene06847:CDS
GGTAGGTGCAGAAGAACAGA+TGG 0.619651 3.1:+74317968 MS.gene06847:CDS
GGTCACAGCAGGTGGAATGG+CGG 0.620189 3.1:+74317522 MS.gene06847:intron
TCCAAATGTTGCATCATCAA+GGG 0.620644 3.1:+74319416 MS.gene06847:CDS
CTCCAATCTGAGAAACCAAG+AGG 0.625201 3.1:+74318934 MS.gene06847:CDS
GAATGAAAAGGGGCTTGGAG+TGG 0.630089 3.1:+74318692 MS.gene06847:intron
TGGCACTTCAGGGACAGGAA+TGG 0.631431 3.1:+74319323 MS.gene06847:CDS
ACTTCAGCTAGTGGACCACC+AGG 0.635831 3.1:-74319210 None:intergenic
TCCACAGGCTTTCTTGAACG+GGG 0.635923 3.1:-74318064 None:intergenic
AGGCTTCAAATAAGCAACCA+AGG 0.637520 3.1:+74318302 MS.gene06847:CDS
TAGGAACAATACTGATCCAG+AGG 0.641405 3.1:+74317943 MS.gene06847:CDS
TGATGCAGAACCATTGTTGG+AGG 0.644016 3.1:-74319025 None:intergenic
CATTGAGCAATTGTGAAAGG+AGG 0.644246 3.1:-74317565 None:intergenic
ATCCCGAATTAGAAGCACCA+AGG 0.660495 3.1:-74318738 None:intergenic
AATCCAGCACAACCTTGGGT+AGG 0.661395 3.1:+74319180 MS.gene06847:CDS
AGTTTGCATTGGAACAACAA+GGG 0.661506 3.1:-74318911 None:intergenic
CCAGGTGTTGAACCTACCCA+AGG 0.666817 3.1:-74319192 None:intergenic
TTGGTCTACTGCAGAGACAG+TGG 0.671251 3.1:+74318975 MS.gene06847:CDS
TCACTTGATCTATCAATGGG+AGG 0.680795 3.1:+74319069 MS.gene06847:CDS
TGGGTAGGTTCAACACCTGG+TGG 0.687244 3.1:+74319195 MS.gene06847:CDS
TGTGAAAGACATATGCATAG+AGG 0.723539 3.1:+74318037 MS.gene06847:CDS
GATTATCAAAGAATGAACGG+TGG 0.727234 3.1:-74317188 None:intergenic
AATGCTATCATTGATAATGG+CGG 0.749635 3.1:+74317309 MS.gene06847:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAAATATGAAATTAATTA+AGG - chr3.1:74317696-74317715 None:intergenic 10.0%
!! ATATATAGAAAAATAAGTAG+TGG + chr3.1:74317423-74317442 MS.gene06847:intron 15.0%
!!! AAAAAAAATCAAGCTTTATT+TGG - chr3.1:74318582-74318601 None:intergenic 15.0%
!!! TAAATAAATGCATTGTTTTA+TGG + chr3.1:74318622-74318641 MS.gene06847:intron 15.0%
!! AAAAAAGCAGAAAAAGTTAA+TGG - chr3.1:74317745-74317764 None:intergenic 20.0%
!! AAAAAGCAGAAAAAGTTAAT+GGG - chr3.1:74317744-74317763 None:intergenic 20.0%
!! ATGATTAAACTTATTGAGTA+AGG - chr3.1:74319457-74319476 None:intergenic 20.0%
!!! TTTCATGTTTTGTTTTGATT+TGG + chr3.1:74318546-74318565 MS.gene06847:intron 20.0%
!!! TTTCTAGTTTGTTATTGATT+TGG + chr3.1:74318663-74318682 MS.gene06847:intron 20.0%
! AAACACAAACTAACCTTTAA+GGG - chr3.1:74317385-74317404 None:intergenic 25.0%
! AAGGTAAATAGAATGAAAAG+TGG - chr3.1:74317801-74317820 None:intergenic 25.0%
! AATCCAACTACAAGAAAATA+TGG + chr3.1:74318199-74318218 MS.gene06847:CDS 25.0%
! ACAAAACATGAAAGTGAATA+AGG - chr3.1:74318539-74318558 None:intergenic 25.0%
! ATAGTCATCATCAAATCAAA+AGG + chr3.1:74318116-74318135 MS.gene06847:CDS 25.0%
! ATATTGAGTTTGACTAAATC+AGG + chr3.1:74318378-74318397 MS.gene06847:intron 25.0%
! CATGATTATCAAAGAATGAA+CGG - chr3.1:74317194-74317213 None:intergenic 25.0%
! GTGAAAAGGTTGAAAATTTA+AGG - chr3.1:74317340-74317359 None:intergenic 25.0%
! TAAACACAAACTAACCTTTA+AGG - chr3.1:74317386-74317405 None:intergenic 25.0%
! TACAAACTTTAGACTCAAAA+TGG - chr3.1:74317772-74317791 None:intergenic 25.0%
! TAGTCATCATCAAATCAAAA+GGG + chr3.1:74318117-74318136 MS.gene06847:CDS 25.0%
! TATGATTTACAAGTACTTGA+TGG + chr3.1:74317609-74317628 MS.gene06847:CDS 25.0%
! TATGCAAAGAAAATGAAGAT+TGG - chr3.1:74318270-74318289 None:intergenic 25.0%
! TTTAAGAGTGAATTTCATAG+AGG - chr3.1:74318606-74318625 None:intergenic 25.0%
! TTTGGTGAATTGAATGAAAA+GGG + chr3.1:74318681-74318700 MS.gene06847:intron 25.0%
!! ATTTGGTGAATTGAATGAAA+AGG + chr3.1:74318680-74318699 MS.gene06847:intron 25.0%
!! TATTTTCTTGTAGTTGGATT+AGG - chr3.1:74318199-74318218 None:intergenic 25.0%
!!! GTTTTATGGTGTTAGTATTA+TGG + chr3.1:74318636-74318655 MS.gene06847:intron 25.0%
!!! TGTCTTTGTTTGTTTTGATT+TGG + chr3.1:74318508-74318527 MS.gene06847:intron 25.0%
!!! TTGTTGTTGGTTTTTTTTGT+AGG - chr3.1:74317081-74317100 None:intergenic 25.0%
AAAAGACATGTTGTATGTTG+TGG - chr3.1:74317262-74317281 None:intergenic 30.0%
AAAGACATGTTGTATGTTGT+GGG - chr3.1:74317261-74317280 None:intergenic 30.0%
AAAGCAACACATGATGAAAA+AGG - chr3.1:74317846-74317865 None:intergenic 30.0%
AATAACACTAGTAGTGTTGT+TGG + chr3.1:74317099-74317118 MS.gene06847:CDS 30.0%
ACAAAGACATAGTACATGTT+TGG - chr3.1:74318497-74318516 None:intergenic 30.0%
AGTTCAGAACTGTTATATAG+TGG - chr3.1:74318853-74318872 None:intergenic 30.0%
ATACAGATATAAACTCACCT+TGG - chr3.1:74318322-74318341 None:intergenic 30.0%
ATACATGAAAGAAGATGAGA+AGG - chr3.1:74317649-74317668 None:intergenic 30.0%
ATTAAGGAAGAAGAGAGAAA+AGG - chr3.1:74317680-74317699 None:intergenic 30.0%
ATTATGATAGGAACTTCCAT+TGG - chr3.1:74318800-74318819 None:intergenic 30.0%
CTAAAATAGCATTCTCAAGT+TGG + chr3.1:74319154-74319173 MS.gene06847:CDS 30.0%
GAAAATGAAGATTGGAGATA+AGG - chr3.1:74318262-74318281 None:intergenic 30.0%
GAAGAACAGATGGTAAAAAA+TGG + chr3.1:74317978-74317997 MS.gene06847:CDS 30.0%
GCTAATGCTATCATTGATAA+TGG + chr3.1:74317306-74317325 MS.gene06847:CDS 30.0%
TCAATGAAACTAAAACCTCT+TGG - chr3.1:74318952-74318971 None:intergenic 30.0%
TCATCACTTGATCTATCAAT+GGG + chr3.1:74319066-74319085 MS.gene06847:CDS 30.0%
TGATAGATCAAGTGATGAAA+GGG - chr3.1:74319064-74319083 None:intergenic 30.0%
TGGAAATGAATTCAGATACT+GGG - chr3.1:74318833-74318852 None:intergenic 30.0%
TTAAGGAAGAAGAGAGAAAA+GGG - chr3.1:74317679-74317698 None:intergenic 30.0%
TTATTATGCAAAACACCAGA+TGG - chr3.1:74319357-74319376 None:intergenic 30.0%
TTCATCACTTGATCTATCAA+TGG + chr3.1:74319065-74319084 MS.gene06847:CDS 30.0%
TTGATAGATCAAGTGATGAA+AGG - chr3.1:74319065-74319084 None:intergenic 30.0%
TTGGTGAATTGAATGAAAAG+GGG + chr3.1:74318682-74318701 MS.gene06847:intron 30.0%
TTTGTCATTGAATCAATGTG+TGG + chr3.1:74317820-74317839 MS.gene06847:intron 30.0%
! AACATACAACATGTCTTTTG+GGG + chr3.1:74317263-74317282 MS.gene06847:CDS 30.0%
! ACAACATACAACATGTCTTT+TGG + chr3.1:74317261-74317280 MS.gene06847:CDS 30.0%
! ACTACTAGTGTTATTGTTGT+TGG - chr3.1:74317094-74317113 None:intergenic 30.0%
! ATAACACTAGTAGTGTTGTT+GGG + chr3.1:74317100-74317119 MS.gene06847:CDS 30.0%
! CAACATACAACATGTCTTTT+GGG + chr3.1:74317262-74317281 MS.gene06847:CDS 30.0%
! GATCCATATTTTCTTGTAGT+TGG - chr3.1:74318205-74318224 None:intergenic 30.0%
! GGATTCAGTGTTATTATGAT+AGG - chr3.1:74318812-74318831 None:intergenic 30.0%
! TGATTTTGTTGAATCCCTTA+AGG + chr3.1:74318410-74318429 MS.gene06847:intron 30.0%
!! AATGCTATCATTGATAATGG+CGG + chr3.1:74317309-74317328 MS.gene06847:CDS 30.0%
!! CACATTGATTCAATGACAAA+AGG - chr3.1:74317820-74317839 None:intergenic 30.0%
!! CTTTCACAGTACTTGTTATT+AGG - chr3.1:74318025-74318044 None:intergenic 30.0%
!!! ACTTGTGTTTTTTGTGTTTG+TGG + chr3.1:74317498-74317517 MS.gene06847:intron 30.0%
!!! GTTTTAGTTTCATTGATGCT+TGG + chr3.1:74318956-74318975 MS.gene06847:CDS 30.0%
AACAAACTTGGAATGACCAA+TGG + chr3.1:74318781-74318800 MS.gene06847:CDS 35.0%
AAGATTGGAGATAAGGATGA+AGG - chr3.1:74318255-74318274 None:intergenic 35.0%
AGATTGGAGATAAGGATGAA+GGG - chr3.1:74318254-74318273 None:intergenic 35.0%
AGTTTGCATTGGAACAACAA+GGG - chr3.1:74318914-74318933 None:intergenic 35.0%
CTGATGCATAACAACAAACT+TGG + chr3.1:74318769-74318788 MS.gene06847:CDS 35.0%
GAAGCAGAAATGTTGTGAAA+AGG - chr3.1:74317354-74317373 None:intergenic 35.0%
GATTATCAAAGAATGAACGG+TGG - chr3.1:74317191-74317210 None:intergenic 35.0%
GGATTAAGTAAGAGAGGAAA+GGG - chr3.1:74318892-74318911 None:intergenic 35.0%
GGGATTCAACAAAATCACAA+TGG - chr3.1:74318407-74318426 None:intergenic 35.0%
GTGGAAATGAATTCAGATAC+TGG - chr3.1:74318834-74318853 None:intergenic 35.0%
TCCAAATGTTGCATCATCAA+GGG + chr3.1:74319416-74319435 MS.gene06847:CDS 35.0%
TGTGAAAGACATATGCATAG+AGG + chr3.1:74318037-74318056 MS.gene06847:CDS 35.0%
TTAGAAGATCCAAGCCTTAA+GGG - chr3.1:74318427-74318446 None:intergenic 35.0%
TTATTTGTGTGAAGTTCCAC+AGG - chr3.1:74318082-74318101 None:intergenic 35.0%
TTTGCATAATAGCAGCTTTG+AGG + chr3.1:74318282-74318301 MS.gene06847:CDS 35.0%
! ACATACAACATGTCTTTTGG+GGG + chr3.1:74317264-74317283 MS.gene06847:CDS 35.0%
! GCTTCATTTTCTGATAGTAG+TGG + chr3.1:74319384-74319403 MS.gene06847:CDS 35.0%
! TCAATCTGAGGCTATCAAAT+AGG + chr3.1:74317924-74317943 MS.gene06847:CDS 35.0%
! TTTCTTGTAGTTGGATTAGG+AGG - chr3.1:74318196-74318215 None:intergenic 35.0%
!! AGAATTTGTTGCATCACTGA+TGG - chr3.1:74319259-74319278 None:intergenic 35.0%
!! AGTTTGTTGTTATGCATCAG+AGG - chr3.1:74318769-74318788 None:intergenic 35.0%
!!! TATCCTTGTTTTTGAAGCAG+TGG + chr3.1:74317892-74317911 MS.gene06847:intron 35.0%
!!! TGTGTTTTTTGTGTTTGTGG+TGG + chr3.1:74317501-74317520 MS.gene06847:intron 35.0%
AACCTCTTGGTTTCTCAGAT+TGG - chr3.1:74318939-74318958 None:intergenic 40.0%
AACTGATGCAGAACCATTGT+TGG - chr3.1:74319031-74319050 None:intergenic 40.0%
AATGGAGATCCAATTTCCCT+TGG + chr3.1:74318721-74318740 MS.gene06847:CDS 40.0%
ACAAATCGTGTCGAATCCAT+TGG + chr3.1:74319303-74319322 MS.gene06847:CDS 40.0%
ACAAGGGGATTAAGTAAGAG+AGG - chr3.1:74318898-74318917 None:intergenic 40.0%
AGGCTTCAAATAAGCAACCA+AGG + chr3.1:74318302-74318321 MS.gene06847:CDS 40.0%
CATCCACTGCTTCAAAAACA+AGG - chr3.1:74317898-74317917 None:intergenic 40.0%
CATTGAGCAATTGTGAAAGG+AGG - chr3.1:74317568-74317587 None:intergenic 40.0%
CTCCATTGAGCAATTGTGAA+AGG - chr3.1:74317571-74317590 None:intergenic 40.0%
CTCCTTTCACAATTGCTCAA+TGG + chr3.1:74317566-74317585 MS.gene06847:CDS 40.0%
CTGATGGAAGTAACATTGCT+TGG - chr3.1:74319243-74319262 None:intergenic 40.0%
CTTAGAAGATCCAAGCCTTA+AGG - chr3.1:74318428-74318447 None:intergenic 40.0%
GAAAGAAGATGAGAAGGAAC+AGG - chr3.1:74317643-74317662 None:intergenic 40.0%
GAATTGAATGAAAAGGGGCT+TGG + chr3.1:74318687-74318706 MS.gene06847:intron 40.0%
GAGTTTGCATTGGAACAACA+AGG - chr3.1:74318915-74318934 None:intergenic 40.0%
GATTGGAGATAAGGATGAAG+GGG - chr3.1:74318253-74318272 None:intergenic 40.0%
GGGATTAAGTAAGAGAGGAA+AGG - chr3.1:74318893-74318912 None:intergenic 40.0%
GTCCAAATGTTGCATCATCA+AGG + chr3.1:74319415-74319434 MS.gene06847:CDS 40.0%
GTTTGCATTGGAACAACAAG+GGG - chr3.1:74318913-74318932 None:intergenic 40.0%
TAGGAACAATACTGATCCAG+AGG + chr3.1:74317943-74317962 MS.gene06847:CDS 40.0%
TCACTTGATCTATCAATGGG+AGG + chr3.1:74319069-74319088 MS.gene06847:CDS 40.0%
TCAGATTGGAGAGTTTGCAT+TGG - chr3.1:74318925-74318944 None:intergenic 40.0%
TTGTTGAATCCCTTAAGGCT+TGG + chr3.1:74318415-74318434 MS.gene06847:intron 40.0%
! AACAATGGTTCTGCATCAGT+TGG + chr3.1:74319030-74319049 MS.gene06847:CDS 40.0%
! CTAACCTTTAAGGGTTGTGT+TGG - chr3.1:74317376-74317395 None:intergenic 40.0%
! TTCACTGCCTGATTTTACTG+TGG + chr3.1:74318165-74318184 MS.gene06847:CDS 40.0%
!! TTAGAAGCACCAAGGGAAAT+TGG - chr3.1:74318733-74318752 None:intergenic 40.0%
!! TTCCCTTGGTGCTTCTAATT+CGG + chr3.1:74318735-74318754 MS.gene06847:CDS 40.0%
!!! CTTGTTTTTGAAGCAGTGGA+TGG + chr3.1:74317896-74317915 MS.gene06847:intron 40.0%
AACAATACTGATCCAGAGGC+TGG + chr3.1:74317947-74317966 MS.gene06847:CDS 45.0%
ATGGCGGCTTCAATAGGAAT+AGG + chr3.1:74317538-74317557 MS.gene06847:CDS 45.0%
CTCCAATCTGAGAAACCAAG+AGG + chr3.1:74318934-74318953 MS.gene06847:CDS 45.0%
GCTGTTGATGCTGAAGGTTA+TGG + chr3.1:74317234-74317253 MS.gene06847:CDS 45.0%
GCTTCCAACACAACCCTTAA+AGG + chr3.1:74317369-74317388 MS.gene06847:CDS 45.0%
GGAACAGCCACAGTAAAATC+AGG - chr3.1:74318175-74318194 None:intergenic 45.0%
GGAATGGTATCATCTCCATC+TGG + chr3.1:74319339-74319358 MS.gene06847:CDS 45.0%
GTCCACTAGCTGAAGTTCTA+AGG + chr3.1:74319217-74319236 MS.gene06847:CDS 45.0%
GTTCCACAGGCTTTCTTGAA+CGG - chr3.1:74318069-74318088 None:intergenic 45.0%
TCGAATCCATTGGCACTTCA+GGG + chr3.1:74319313-74319332 MS.gene06847:CDS 45.0%
TGAGTTTCGCGTTCAAGACA+AGG + chr3.1:74317053-74317072 MS.gene06847:CDS 45.0%
TGATGCAGAACCATTGTTGG+AGG - chr3.1:74319028-74319047 None:intergenic 45.0%
TGGCGGCTTCAATAGGAATA+GGG + chr3.1:74317539-74317558 MS.gene06847:CDS 45.0%
TTCCACAGGCTTTCTTGAAC+GGG - chr3.1:74318068-74318087 None:intergenic 45.0%
! CACTAGTAGTGTTGTTGGGT+CGG + chr3.1:74317104-74317123 MS.gene06847:CDS 45.0%
! TGGATGGTGGTTTCAATCTG+AGG + chr3.1:74317912-74317931 MS.gene06847:CDS 45.0%
! TTGGTGCTTCTAATTCGGGA+TGG + chr3.1:74318740-74318759 MS.gene06847:CDS 45.0%
!! ATCCCGAATTAGAAGCACCA+AGG - chr3.1:74318741-74318760 None:intergenic 45.0%
!! GCCCTTGATGATGCAACATT+TGG - chr3.1:74319420-74319439 None:intergenic 45.0%
!! TCCCGAATTAGAAGCACCAA+GGG - chr3.1:74318740-74318759 None:intergenic 45.0%
!! TCCCTTGGTGCTTCTAATTC+GGG + chr3.1:74318736-74318755 MS.gene06847:CDS 45.0%
!!! GTTTTTGAAGCAGTGGATGG+TGG + chr3.1:74317899-74317918 MS.gene06847:intron 45.0%
AATCCAGCACAACCTTGGGT+AGG + chr3.1:74319180-74319199 MS.gene06847:CDS 50.0%
AGAACCATTGTTGGAGGTGG+TGG - chr3.1:74319022-74319041 None:intergenic 50.0%
ATACTGATCCAGAGGCTGGT+AGG + chr3.1:74317951-74317970 MS.gene06847:CDS 50.0%
GAATGAAAAGGGGCTTGGAG+TGG + chr3.1:74318692-74318711 MS.gene06847:intron 50.0%
GAGATAAGGATGAAGGGGAG+TGG - chr3.1:74318248-74318267 None:intergenic 50.0%
GCTCAATCCAGCACAACCTT+GGG + chr3.1:74319176-74319195 MS.gene06847:CDS 50.0%
GGCCTTAGAACTTCAGCTAG+TGG - chr3.1:74319222-74319241 None:intergenic 50.0%
GGTAGGTGCAGAAGAACAGA+TGG + chr3.1:74317968-74317987 MS.gene06847:CDS 50.0%
GTCGAATCCATTGGCACTTC+AGG + chr3.1:74319312-74319331 MS.gene06847:CDS 50.0%
TCCACAGGCTTTCTTGAACG+GGG - chr3.1:74318067-74318086 None:intergenic 50.0%
TCTGCTGCTGTTGATGCTGA+AGG + chr3.1:74317228-74317247 MS.gene06847:CDS 50.0%
TGCAGAACCATTGTTGGAGG+TGG - chr3.1:74319025-74319044 None:intergenic 50.0%
TTGGTCTACTGCAGAGACAG+TGG + chr3.1:74318975-74318994 MS.gene06847:CDS 50.0%
ACCACCACCACCTCCAACAA+TGG + chr3.1:74319015-74319034 MS.gene06847:CDS 55.0%
CCTTGGGTAGGTTCAACACC+TGG + chr3.1:74319192-74319211 MS.gene06847:CDS 55.0%
GAACCTACCCAAGGTTGTGC+TGG - chr3.1:74319186-74319205 None:intergenic 55.0%
GGCTCAATCCAGCACAACCT+TGG + chr3.1:74319175-74319194 MS.gene06847:CDS 55.0%
GGCTTGGAGTGGATGCTGAA+TGG + chr3.1:74318703-74318722 MS.gene06847:CDS 55.0%
GGGGGTGATTCTTCTGCTCT+AGG + chr3.1:74317282-74317301 MS.gene06847:CDS 55.0%
GGTGGAATGGCGGCTTCAAT+AGG + chr3.1:74317532-74317551 MS.gene06847:CDS 55.0%
GTGTTTGTGGTGGTCACAGC+AGG + chr3.1:74317511-74317530 MS.gene06847:intron 55.0%
TCCATTGGCACTTCAGGGAC+AGG + chr3.1:74319318-74319337 MS.gene06847:CDS 55.0%
TCCCCGTTCAAGAAAGCCTG+TGG + chr3.1:74318063-74318082 MS.gene06847:CDS 55.0%
TGGCACTTCAGGGACAGGAA+TGG + chr3.1:74319323-74319342 MS.gene06847:CDS 55.0%
TGGGTAGGTTCAACACCTGG+TGG + chr3.1:74319195-74319214 MS.gene06847:CDS 55.0%
TTTGTGGTGGTCACAGCAGG+TGG + chr3.1:74317514-74317533 MS.gene06847:intron 55.0%
! ACCATTGTTGGAGGTGGTGG+TGG - chr3.1:74319019-74319038 None:intergenic 55.0%
! ACTTCAGCTAGTGGACCACC+AGG - chr3.1:74319213-74319232 None:intergenic 55.0%
! TCCTGTCCCTGAAGTGCCAA+TGG - chr3.1:74319322-74319341 None:intergenic 55.0%
!! ATTGTTGGAGGTGGTGGTGG+TGG - chr3.1:74319016-74319035 None:intergenic 55.0%
!! CCAGGTGTTGAACCTACCCA+AGG - chr3.1:74319195-74319214 None:intergenic 55.0%
!! GGGTCGGTGCAGAGTTTTGA+AGG + chr3.1:74317120-74317139 MS.gene06847:CDS 55.0%
CTTCTGCACCTACCAGCCTC+TGG - chr3.1:74317962-74317981 None:intergenic 60.0%
GGTCACAGCAGGTGGAATGG+CGG + chr3.1:74317522-74317541 MS.gene06847:intron 60.0%
GGTGGTCACAGCAGGTGGAA+TGG + chr3.1:74317519-74317538 MS.gene06847:intron 60.0%
!! GGAGGTGGTGGTGGTGGTGT+TGG - chr3.1:74319010-74319029 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 74317048 74319494 74317048 ID=MS.gene06847
chr3.1 mRNA 74317048 74319494 74317048 ID=MS.gene06847.t1;Parent=MS.gene06847
chr3.1 exon 74317048 74317390 74317048 ID=MS.gene06847.t1.exon1;Parent=MS.gene06847.t1
chr3.1 CDS 74317048 74317390 74317048 ID=cds.MS.gene06847.t1;Parent=MS.gene06847.t1
chr3.1 exon 74317530 74317664 74317530 ID=MS.gene06847.t1.exon2;Parent=MS.gene06847.t1
chr3.1 CDS 74317530 74317664 74317530 ID=cds.MS.gene06847.t1;Parent=MS.gene06847.t1
chr3.1 exon 74317912 74318323 74317912 ID=MS.gene06847.t1.exon3;Parent=MS.gene06847.t1
chr3.1 CDS 74317912 74318323 74317912 ID=cds.MS.gene06847.t1;Parent=MS.gene06847.t1
chr3.1 exon 74318702 74319494 74318702 ID=MS.gene06847.t1.exon4;Parent=MS.gene06847.t1
chr3.1 CDS 74318702 74319494 74318702 ID=cds.MS.gene06847.t1;Parent=MS.gene06847.t1
Gene Sequence

>MS.gene06847

ATGGGTGAGTTTCGCGTTCAAGACAAGGAACCTACAAAAAAAACCAACAACAATAACACTAGTAGTGTTGTTGGGTCGGTGCAGAGTTTTGAAGGTTTCTCTAATAAGAACGTGATGATACTGCAACATCATAATCATCACCACCGTTCATTCTTTGATAATCATGATTCTTCTTCTGTTTCTGCTGCTGTTGATGCTGAAGGTTATGGTCCCACAACATACAACATGTCTTTTGGGGGTGATTCTTCTGCTCTAGGTGCTAATGCTATCATTGATAATGGCGGTGTATCCTTAAATTTTCAACCTTTTCACAACATTTCTGCTTCCAACACAACCCTTAAAGGTTAGTTTGTGTTTATTTCTTATTGTTCAATAATATATAGAAAAATAAGTAGTGGTCAGAAAAAAAAAAAAAAAAAGAGTTCTGTATAAATTTCTGATTCTGAACATACTTGTGTTTTTTGTGTTTGTGGTGGTCACAGCAGGTGGAATGGCGGCTTCAATAGGAATAGGGTATCCTCCTTTCACAATTGCTCAATGGAGAGAGCTTGAAAGACAAGCTATGATTTACAAGTACTTGATGGCTTCACTTCCTGTTCCTTCTCATCTTCTTTCATGTATGATATGACCCTTTTCTCTCTTCTTCCTTAATTAATTTCATATTTTCATGTACAGACAAAGAAAATAACATAGCCCATTAACTTTTTCTGCTTTTTTAAGTCCATTTTGAGTCTAAAGTTTGTATTTTTACCACTTTTCATTCTATTTACCTTTTGTCATTGAATCAATGTGTGGCCTTTTTCATCATGTGTTGCTTTCTGTTCTTACTGTTTCTTGAAATTTGTATCCTTGTTTTTGAAGCAGTGGATGGTGGTTTCAATCTGAGGCTATCAAATAGGAACAATACTGATCCAGAGGCTGGTAGGTGCAGAAGAACAGATGGTAAAAAATGGAGATGTTCAAGAGATGTAGCTCCTAATAACAAGTACTGTGAAAGACATATGCATAGAGGTCGTCCCCGTTCAAGAAAGCCTGTGGAACTTCACACAAATAACAATAACAATAGCAATAGTCATCATCAAATCAAAAGGGCTCGTTGTGATTCTTCTAATTCTTTTTCACTGCCTGATTTTACTGTGGCTGTTCCTCCTAATCCAACTACAAGAAAATATGGATCTTCATCACATTTTCTTGCTTCCACTCCCCTTCATCCTTATCTCCAATCTTCATTTTCTTTGCATAATAGCAGCTTTGAGGCTTCAAATAAGCAACCAAGGTGAGTTTATATCTGTATTTTGCTATATCTGTTTAGAATCACATGTTTTGAATCATATTGAGTTTGACTAAATCAGGTTGCCATTGTGATTTTGTTGAATCCCTTAAGGCTTGGATCTTCTAAGTGTAGCTTTTGCTAAAATCTGTGATTCTTCTAAATTTATCATGAAACCAAACATGTACTATGTCTTTGTTTGTTTTGATTTGGATTTTCCTTATTCACTTTCATGTTTTGTTTTGATTTGGTCTAAAGACTCCAAATAAAGCTTGATTTTTTTTTCCTCTATGAAATTCACTCTTAAATAAATGCATTGTTTTATGGTGTTAGTATTATGGAATTTTTCTAGTTTGTTATTGATTTGGTGAATTGAATGAAAAGGGGCTTGGAGTGGATGCTGAATGGAGATCCAATTTCCCTTGGTGCTTCTAATTCGGGATGGAATCCTCTGATGCATAACAACAAACTTGGAATGACCAATGGAAGTTCCTATCATAATAACACTGAATCCCAGTATCTGAATTCATTTCCACTATATAACAGTTCTGAACTAGCTCAACATGAAAAACCCTTTCCTCTCTTACTTAATCCCCTTGTTGTTCCAATGCAAACTCTCCAATCTGAGAAACCAAGAGGTTTTAGTTTCATTGATGCTTGGTCTACTGCAGAGACAGTGGAAAACAATGCCAACACCACCACCACCACCTCCAACAATGGTTCTGCATCAGTTGGTAAATTATCCCTTTCATCACTTGATCTATCAATGGGAGGTAGTGCTGTGAGTGAAGAAATGAGTACTATTGAAATGAATGCTGCGAGTGATGATGATAGTACTAAAATAGCATTCTCAAGTTGGCTCAATCCAGCACAACCTTGGGTAGGTTCAACACCTGGTGGTCCACTAGCTGAAGTTCTAAGGCCAAGCAATGTTACTTCCATCAGTGATGCAACAAATTCTAATTCATCATCAACTCTCACAACAACAAATCGTGTCGAATCCATTGGCACTTCAGGGACAGGAATGGTATCATCTCCATCTGGTGTTTTGCATAATAAAACACTTGCTTCATTTTCTGATAGTAGTGGTAATAGCAGTCCAAATGTTGCATCATCAAGGGCTAATTCTGAAATTGCCTTACTCAATAAGTTTAATCATATTTCATATGTAAATTAA

Protein sequence

>MS.gene06847.t1

MGEFRVQDKEPTKKTNNNNTSSVVGSVQSFEGFSNKNVMILQHHNHHHRSFFDNHDSSSVSAAVDAEGYGPTTYNMSFGGDSSALGANAIIDNGGVSLNFQPFHNISASNTTLKAGGMAASIGIGYPPFTIAQWRELERQAMIYKYLMASLPVPSHLLSLDGGFNLRLSNRNNTDPEAGRCRRTDGKKWRCSRDVAPNNKYCERHMHRGRPRSRKPVELHTNNNNNSNSHHQIKRARCDSSNSFSLPDFTVAVPPNPTTRKYGSSSHFLASTPLHPYLQSSFSLHNSSFEASNKQPRGLEWMLNGDPISLGASNSGWNPLMHNNKLGMTNGSSYHNNTESQYLNSFPLYNSSELAQHEKPFPLLLNPLVVPMQTLQSEKPRGFSFIDAWSTAETVENNANTTTTTSNNGSASVGKLSLSSLDLSMGGSAVSEEMSTIEMNAASDDDSTKIAFSSWLNPAQPWVGSTPGGPLAEVLRPSNVTSISDATNSNSSSTLTTTNRVESIGTSGTGMVSSPSGVLHNKTLASFSDSSGNSSPNVASSRANSEIALLNKFNHISYVN