Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068504.t1 | KEH25312.1 | 41.3 | 390 | 28 | 3 | 1 | 189 | 1 | 390 | 4.80E-62 | 247.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068504.t1 | Q9FWQ5 | 49.3 | 71 | 36 | 0 | 129 | 199 | 1622 | 1692 | 2.6e-16 | 87.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068504.t1 | A0A072U6L9 | 41.3 | 390 | 28 | 3 | 1 | 189 | 1 | 390 | 3.5e-62 | 247.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene068504.t1 | TR | TAZ |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068504.t1 | MTR_6g017130 | 77.612 | 134 | 29 | 1 | 1 | 134 | 1 | 133 | 1.32e-63 | 202 |
MS.gene068504.t1 | MTR_6g017130 | 76.636 | 107 | 24 | 1 | 28 | 134 | 92 | 197 | 2.25e-47 | 160 |
MS.gene068504.t1 | MTR_6g017130 | 90.164 | 61 | 5 | 1 | 130 | 189 | 330 | 390 | 1.96e-30 | 115 |
MS.gene068504.t1 | MTR_6g017130 | 71.429 | 56 | 16 | 0 | 28 | 83 | 156 | 211 | 1.89e-18 | 82.8 |
MS.gene068504.t1 | MTR_5g085310 | 87.302 | 63 | 8 | 0 | 129 | 191 | 963 | 1025 | 4.23e-32 | 122 |
MS.gene068504.t1 | MTR_3g107960 | 72.727 | 77 | 21 | 0 | 129 | 205 | 1128 | 1204 | 8.03e-32 | 122 |
MS.gene068504.t1 | MTR_6g017010 | 72.500 | 80 | 18 | 1 | 129 | 208 | 694 | 769 | 1.42e-31 | 121 |
MS.gene068504.t1 | MTR_3g101100 | 71.429 | 77 | 22 | 0 | 129 | 205 | 1317 | 1393 | 1.50e-30 | 118 |
MS.gene068504.t1 | MTR_6g017120 | 84.746 | 59 | 9 | 0 | 64 | 122 | 95 | 153 | 3.95e-27 | 101 |
MS.gene068504.t1 | MTR_0299s0030 | 33.712 | 264 | 114 | 11 | 1 | 208 | 86 | 344 | 5.17e-23 | 94.7 |
MS.gene068504.t1 | MTR_1g047940 | 59.259 | 81 | 28 | 2 | 122 | 197 | 118 | 198 | 4.30e-22 | 89.7 |
MS.gene068504.t1 | MTR_4g005050 | 49.296 | 71 | 36 | 0 | 129 | 199 | 1625 | 1695 | 1.05e-18 | 84.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068504.t1 | AT1G79000 | 49.296 | 71 | 36 | 0 | 129 | 199 | 1613 | 1683 | 2.81e-19 | 85.9 |
MS.gene068504.t1 | AT1G16710 | 49.296 | 71 | 36 | 0 | 129 | 199 | 1622 | 1692 | 2.89e-19 | 85.9 |
MS.gene068504.t1 | AT1G79000 | 49.296 | 71 | 36 | 0 | 129 | 199 | 1589 | 1659 | 3.20e-19 | 85.9 |
MS.gene068504.t1 | AT1G79000 | 49.296 | 71 | 36 | 0 | 129 | 199 | 1613 | 1683 | 3.21e-19 | 85.9 |
MS.gene068504.t1 | AT1G16710 | 49.296 | 71 | 36 | 0 | 129 | 199 | 1593 | 1663 | 3.24e-19 | 85.9 |
MS.gene068504.t1 | AT1G16710 | 49.296 | 71 | 36 | 0 | 129 | 199 | 1596 | 1666 | 3.24e-19 | 85.9 |
MS.gene068504.t1 | AT1G16710 | 49.296 | 71 | 36 | 0 | 129 | 199 | 1596 | 1666 | 3.24e-19 | 85.9 |
MS.gene068504.t1 | AT1G16710 | 49.296 | 71 | 36 | 0 | 129 | 199 | 1596 | 1666 | 3.24e-19 | 85.9 |
MS.gene068504.t1 | AT1G16710 | 49.296 | 71 | 36 | 0 | 129 | 199 | 1596 | 1666 | 3.24e-19 | 85.9 |
MS.gene068504.t1 | AT1G16710 | 49.296 | 71 | 36 | 0 | 129 | 199 | 1557 | 1627 | 4.30e-19 | 85.5 |
MS.gene068504.t1 | AT1G16710 | 49.296 | 71 | 36 | 0 | 129 | 199 | 1557 | 1627 | 4.30e-19 | 85.5 |
MS.gene068504.t1 | AT1G16710 | 49.296 | 71 | 36 | 0 | 129 | 199 | 1557 | 1627 | 4.30e-19 | 85.5 |
MS.gene068504.t1 | AT3G12980 | 41.429 | 70 | 38 | 1 | 130 | 199 | 1508 | 1574 | 3.80e-13 | 68.2 |
MS.gene068504.t1 | AT3G12980 | 41.429 | 70 | 38 | 1 | 130 | 199 | 1589 | 1655 | 3.89e-13 | 68.2 |
Find 29 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCTGAGTCTTTGCAATTCC+TGG | 0.242391 | 4.2:-57846747 | None:intergenic |
GCTCTCCAATCTTACGGTTT+TGG | 0.244128 | 4.2:-57844920 | None:intergenic |
AAGGAAGTTAATCTGAAAAT+TGG | 0.254613 | 4.2:+57844948 | MS.gene068504:CDS |
TCGGGATTTGAAAGCGATTC+GGG | 0.330124 | 4.2:+57845091 | MS.gene068504:CDS |
TTGTCATAGAGCTGAAGTTT+TGG | 0.349357 | 4.2:+57846970 | MS.gene068504:CDS |
CTGAAAATTGGATACAATAC+TGG | 0.354647 | 4.2:+57844960 | MS.gene068504:CDS |
AATGTAGAATACCGCGTTGC+AGG | 0.358324 | 4.2:+57846768 | MS.gene068504:CDS |
AAAGTTGGAAAGACATCAAT+TGG | 0.370420 | 4.2:+57845228 | MS.gene068504:CDS |
CCGAAAATTAGATACAATAT+TGG | 0.391268 | 4.2:+57845152 | MS.gene068504:CDS |
AAAGTTGGGAAGACATCAAT+TGG | 0.408372 | 4.2:+57845036 | MS.gene068504:CDS |
GTCGGGATTTGAAAGCGATT+CGG | 0.419586 | 4.2:+57845090 | MS.gene068504:CDS |
TGGGAAGCTCTCCAATCTTA+CGG | 0.420073 | 4.2:-57844926 | None:intergenic |
AAGTGCAAAATTCGAGTGAA+TGG | 0.459932 | 4.2:+57846677 | MS.gene068504:CDS |
ACATCAATTGGAAAGACATC+AGG | 0.481094 | 4.2:+57845048 | MS.gene068504:CDS |
AGCGACGGAGCAGTCGTCAT+TGG | 0.485206 | 4.2:+57846995 | MS.gene068504:CDS |
GTGTCCCAAAACCGTAAGAT+TGG | 0.496680 | 4.2:+57844915 | MS.gene068504:CDS |
TGGGACACCGCATTGTTAGT+TGG | 0.503360 | 4.2:-57844900 | None:intergenic |
TTTGAAAGCGATTCGGGACA+AGG | 0.522881 | 4.2:+57845097 | MS.gene068504:CDS |
TTATACTAACTACGCACTCC+AGG | 0.542229 | 4.2:+57846729 | MS.gene068504:CDS |
AAGCGATTCGGGACAAGGGA+AGG | 0.588043 | 4.2:+57845102 | MS.gene068504:CDS |
GATACAATACTGGTAAGCGT+TGG | 0.597902 | 4.2:+57844970 | MS.gene068504:CDS |
ATCTGAAGAAGCATGTAGAA+CGG | 0.598774 | 4.2:+57846927 | MS.gene068504:CDS |
TTGAAAGCGATTCGGGACAA+GGG | 0.617790 | 4.2:+57845098 | MS.gene068504:CDS |
ACATCAATTGGAAAGACACA+AGG | 0.624512 | 4.2:+57845240 | MS.gene068504:CDS |
GATACAATATTGGTACGCGA+TGG | 0.641120 | 4.2:+57845162 | MS.gene068504:CDS |
TAAGATTGGAGAGCTTCCCA+AGG | 0.665492 | 4.2:+57844929 | MS.gene068504:CDS |
CATCAATTGGAAAGACACAA+GGG | 0.718892 | 4.2:+57845241 | MS.gene068504:CDS |
TAGTGATCCAACTAACAATG+CGG | 0.734704 | 4.2:+57844893 | MS.gene068504:CDS |
ATTGTAACACACCTGCAACG+CGG | 0.761234 | 4.2:-57846779 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTATTTTCATAATTTTGATT+AGG | + | chr4.2:57845829-57845848 | MS.gene068504:intron | 10.0% |
!! | AAAATTATATGAAAAACATC+AGG | - | chr4.2:57846154-57846173 | None:intergenic | 15.0% |
!! | ATTATGAAAATAACTTACAT+TGG | - | chr4.2:57845822-57845841 | None:intergenic | 15.0% |
!! | GATTTATTAAAAAAGAGTAG+AGG | + | chr4.2:57845647-57845666 | MS.gene068504:intron | 20.0% |
!! | TTCATTCAAAACATTGAATT+AGG | + | chr4.2:57846190-57846209 | MS.gene068504:intron | 20.0% |
!!! | AGCATTGAATGAAATAAAAA+GGG | + | chr4.2:57846024-57846043 | MS.gene068504:intron | 20.0% |
!!! | CATATAATTTTCTCATCATT+AGG | + | chr4.2:57846163-57846182 | MS.gene068504:intron | 20.0% |
!!! | CCAATATTGTATCTAATTTT+CGG | - | chr4.2:57845155-57845174 | None:intergenic | 20.0% |
!!! | GATTCAATAAATTCTTTTCT+GGG | + | chr4.2:57845434-57845453 | MS.gene068504:intron | 20.0% |
!!! | TAGCATTGAATGAAATAAAA+AGG | + | chr4.2:57846023-57846042 | MS.gene068504:intron | 20.0% |
!!! | TGATTCAATAAATTCTTTTC+TGG | + | chr4.2:57845433-57845452 | MS.gene068504:intron | 20.0% |
!!! | TTCATTTTGAAACTGAAATT+GGG | - | chr4.2:57846414-57846433 | None:intergenic | 20.0% |
!!! | TTTCATAATTTTGATTAGGT+TGG | + | chr4.2:57845833-57845852 | MS.gene068504:intron | 20.0% |
!!! | TTTTAAATCTTTCAACTCAT+TGG | + | chr4.2:57845376-57845395 | MS.gene068504:intron | 20.0% |
! | AAGGAAGTTAATCTGAAAAT+TGG | + | chr4.2:57844948-57844967 | MS.gene068504:CDS | 25.0% |
! | ACAACAAGAAAAGACTTTAT+TGG | - | chr4.2:57845333-57845352 | None:intergenic | 25.0% |
! | AGGAATGAAGAAAAATTGTT+TGG | + | chr4.2:57845068-57845087 | MS.gene068504:CDS | 25.0% |
! | ATATGAAAAACATCAGGTTT+AGG | - | chr4.2:57846148-57846167 | None:intergenic | 25.0% |
! | ATGAAGAAAAATTGTTTGGT+CGG | + | chr4.2:57845072-57845091 | MS.gene068504:CDS | 25.0% |
! | CCGAAAATTAGATACAATAT+TGG | + | chr4.2:57845152-57845171 | MS.gene068504:CDS | 25.0% |
! | GATATCATTATGTTTAGTGT+CGG | - | chr4.2:57846250-57846269 | None:intergenic | 25.0% |
! | GTAGAATATCAAAATTCTCT+AGG | - | chr4.2:57846820-57846839 | None:intergenic | 25.0% |
! | TCATTAGTCAAATAAGGAAA+TGG | + | chr4.2:57846481-57846500 | MS.gene068504:intron | 25.0% |
!! | AATTTTCAGATTAACTTCCT+TGG | - | chr4.2:57844949-57844968 | None:intergenic | 25.0% |
!! | ACCATATCTTTTTACAATTG+TGG | - | chr4.2:57846709-57846728 | None:intergenic | 25.0% |
!! | ATTTTCAGATTAACTTCCTT+GGG | - | chr4.2:57844948-57844967 | None:intergenic | 25.0% |
!!! | GTTCATTTTGAAACTGAAAT+TGG | - | chr4.2:57846415-57846434 | None:intergenic | 25.0% |
!!! | TCTTCTACATCCTTTTTTAT+AGG | + | chr4.2:57845796-57845815 | MS.gene068504:intron | 25.0% |
AAAGTTGGAAAGACATCAAT+TGG | + | chr4.2:57845228-57845247 | MS.gene068504:CDS | 30.0% | |
AAATAGAACAGTAAAGGACT+TGG | + | chr4.2:57845700-57845719 | MS.gene068504:intron | 30.0% | |
AAGATTTAGAGAATGAGTCA+GGG | - | chr4.2:57845580-57845599 | None:intergenic | 30.0% | |
AATAGAACAGTAAAGGACTT+GGG | + | chr4.2:57845701-57845720 | MS.gene068504:intron | 30.0% | |
AGTGTCAAATAGAACAGTAA+AGG | + | chr4.2:57845694-57845713 | MS.gene068504:intron | 30.0% | |
ATTCTCTAAATCTTCCTAAG+TGG | + | chr4.2:57845586-57845605 | MS.gene068504:intron | 30.0% | |
CTGAAAATTGGATACAATAC+TGG | + | chr4.2:57844960-57844979 | MS.gene068504:CDS | 30.0% | |
GCCACAATTGTAAAAAGATA+TGG | + | chr4.2:57846705-57846724 | MS.gene068504:CDS | 30.0% | |
TCGGAATCATTAGTCAAATA+AGG | + | chr4.2:57846475-57846494 | MS.gene068504:intron | 30.0% | |
TGAAGAAAAATTGTTTGGTC+GGG | + | chr4.2:57845073-57845092 | MS.gene068504:CDS | 30.0% | |
TGACAAACACATTCAAAGAA+CGG | + | chr4.2:57846093-57846112 | MS.gene068504:intron | 30.0% | |
! | AGACTCTAAAGATGAAAATG+AGG | - | chr4.2:57845474-57845493 | None:intergenic | 30.0% |
! | CTCTTGTAGGCAATATATTT+TGG | - | chr4.2:57845859-57845878 | None:intergenic | 30.0% |
! | CTTACATTGGCCTATAAAAA+AGG | - | chr4.2:57845809-57845828 | None:intergenic | 30.0% |
!! | AGAGTGGATTGTTTGAAAAT+AGG | + | chr4.2:57846277-57846296 | MS.gene068504:intron | 30.0% |
!! | GAGTGGATTGTTTGAAAATA+GGG | + | chr4.2:57846278-57846297 | MS.gene068504:intron | 30.0% |
!! | GGGAAGGAAACTTTTAAAAA+AGG | + | chr4.2:57845118-57845137 | MS.gene068504:CDS | 30.0% |
!! | TTGAACACTTTTGAGTCAAT+TGG | - | chr4.2:57846439-57846458 | None:intergenic | 30.0% |
!!! | TCATTTTCATCTTTAGAGTC+TGG | + | chr4.2:57845473-57845492 | MS.gene068504:intron | 30.0% |
AAAGTTGGGAAGACATCAAT+TGG | + | chr4.2:57845036-57845055 | MS.gene068504:CDS | 35.0% | |
AAGTGCAAAATTCGAGTGAA+TGG | + | chr4.2:57846677-57846696 | MS.gene068504:CDS | 35.0% | |
AATGATATCGTTCTTGAGAG+TGG | + | chr4.2:57846261-57846280 | MS.gene068504:intron | 35.0% | |
ACATCAATTGGAAAGACACA+AGG | + | chr4.2:57845240-57845259 | MS.gene068504:CDS | 35.0% | |
ACATCAATTGGAAAGACATC+AGG | + | chr4.2:57845048-57845067 | MS.gene068504:CDS | 35.0% | |
CATCAATTGGAAAGACACAA+GGG | + | chr4.2:57845241-57845260 | MS.gene068504:CDS | 35.0% | |
CCTTCTTAGATGCAAAAAGT+TGG | + | chr4.2:57845213-57845232 | MS.gene068504:CDS | 35.0% | |
CGTCTTAGAGACAAAAAGTT+GGG | + | chr4.2:57845022-57845041 | MS.gene068504:CDS | 35.0% | |
CTTACTGACATACACACAAA+TGG | + | chr4.2:57846572-57846591 | MS.gene068504:intron | 35.0% | |
GAAGATTTAGAGAATGAGTC+AGG | - | chr4.2:57845581-57845600 | None:intergenic | 35.0% | |
GAATGTGTTTGTCAGAACTA+TGG | - | chr4.2:57846087-57846106 | None:intergenic | 35.0% | |
GATCTATCTACTGAACTTGT+TGG | + | chr4.2:57845625-57845644 | MS.gene068504:intron | 35.0% | |
GGCAACTGAAATATGTGAAA+TGG | - | chr4.2:57846066-57846085 | None:intergenic | 35.0% | |
GTCTGATAAGGATGATGTTA+AGG | - | chr4.2:57845558-57845577 | None:intergenic | 35.0% | |
TAGTGATCCAACTAACAATG+CGG | + | chr4.2:57844893-57844912 | MS.gene068504:CDS | 35.0% | |
TGTTAAGGATGAAGCAAATG+TGG | - | chr4.2:57845543-57845562 | None:intergenic | 35.0% | |
TTCTTGATCTGTGAACAGTT+TGG | - | chr4.2:57846638-57846657 | None:intergenic | 35.0% | |
! | ATCATTATGTTTAGTGTCGG+AGG | - | chr4.2:57846247-57846266 | None:intergenic | 35.0% |
! | ATCTGAAGAAGCATGTAGAA+CGG | + | chr4.2:57846927-57846946 | MS.gene068504:CDS | 35.0% |
! | CCAACTTTTTGCATCTAAGA+AGG | - | chr4.2:57845216-57845235 | None:intergenic | 35.0% |
! | TCATTATGTTTAGTGTCGGA+GGG | - | chr4.2:57846246-57846265 | None:intergenic | 35.0% |
! | TTGTCATAGAGCTGAAGTTT+TGG | + | chr4.2:57846970-57846989 | MS.gene068504:CDS | 35.0% |
! | TTTTGTGTTCAAAGTGTGTG+AGG | + | chr4.2:57845399-57845418 | MS.gene068504:intron | 35.0% |
!! | CCAACTTTTTGTCTCTAAGA+CGG | - | chr4.2:57845024-57845043 | None:intergenic | 35.0% |
!!! | TTGAATTAGGTGCCATTTTC+AGG | + | chr4.2:57846203-57846222 | MS.gene068504:intron | 35.0% |
ATAGATCAAGCAGAGTCTGA+TGG | - | chr4.2:57845612-57845631 | None:intergenic | 40.0% | |
ATGAAGCAAATGTGGTTGTG+GGG | - | chr4.2:57845535-57845554 | None:intergenic | 40.0% | |
CAAACTGAAACTGAGACTTC+TGG | - | chr4.2:57846323-57846342 | None:intergenic | 40.0% | |
CAACACCAGTATGTCAATCT+CGG | + | chr4.2:57846456-57846475 | MS.gene068504:intron | 40.0% | |
CAAGTCTTCCAAAGACATTC+TGG | + | chr4.2:57845730-57845749 | MS.gene068504:intron | 40.0% | |
CACTGAATGCGAGAAATTTC+TGG | + | chr4.2:57845958-57845977 | MS.gene068504:intron | 40.0% | |
CATCAACATCAGCCTGAAAA+TGG | - | chr4.2:57846218-57846237 | None:intergenic | 40.0% | |
CCGTCTTAGAGACAAAAAGT+TGG | + | chr4.2:57845021-57845040 | MS.gene068504:CDS | 40.0% | |
GAAACTGAAATTGGGACTTC+TGG | - | chr4.2:57846406-57846425 | None:intergenic | 40.0% | |
GATACAATACTGGTAAGCGT+TGG | + | chr4.2:57844970-57844989 | MS.gene068504:CDS | 40.0% | |
GATACAATATTGGTACGCGA+TGG | + | chr4.2:57845162-57845181 | MS.gene068504:CDS | 40.0% | |
GATGAAGCAAATGTGGTTGT+GGG | - | chr4.2:57845536-57845555 | None:intergenic | 40.0% | |
GTTCATCATGGAGGAATACT+TGG | - | chr4.2:57846361-57846380 | None:intergenic | 40.0% | |
TAGATGGTAGAGGTTCATCA+TGG | - | chr4.2:57846373-57846392 | None:intergenic | 40.0% | |
TCCAAGACACAATCACTTCA+CGG | - | chr4.2:57845925-57845944 | None:intergenic | 40.0% | |
TGATTCCGAGATTGACATAC+TGG | - | chr4.2:57846464-57846483 | None:intergenic | 40.0% | |
TTATACTAACTACGCACTCC+AGG | + | chr4.2:57846729-57846748 | MS.gene068504:CDS | 40.0% | |
TTCTGAGTCTTTGCAATTCC+TGG | - | chr4.2:57846750-57846769 | None:intergenic | 40.0% | |
TTGCATCACCAGAATGTCTT+TGG | - | chr4.2:57845741-57845760 | None:intergenic | 40.0% | |
! | ACGAGGAAGTTTTCTCTTGT+AGG | - | chr4.2:57845872-57845891 | None:intergenic | 40.0% |
! | CACTCGAATTTTGCACTTAC+TGG | - | chr4.2:57846675-57846694 | None:intergenic | 40.0% |
! | CAGAATGTCTTTGGAAGACT+TGG | - | chr4.2:57845732-57845751 | None:intergenic | 40.0% |
! | CATTATGTTTAGTGTCGGAG+GGG | - | chr4.2:57846245-57846264 | None:intergenic | 40.0% |
! | CTCTCCAATCTTACGGTTTT+GGG | - | chr4.2:57844922-57844941 | None:intergenic | 40.0% |
!! | ATCTGAAAGCATCTGAGGAA+GGG | - | chr4.2:57845310-57845329 | None:intergenic | 40.0% |
!! | ATTGGATCTGAAAGCATCTG+AGG | - | chr4.2:57845315-57845334 | None:intergenic | 40.0% |
!! | TCATCTTTAGAGTCTGGTTC+AGG | + | chr4.2:57845479-57845498 | MS.gene068504:intron | 40.0% |
AACACATTCAAAGAACGGCG+AGG | + | chr4.2:57846098-57846117 | MS.gene068504:intron | 45.0% | |
AACAGTAAAGGACTTGGGAC+AGG | + | chr4.2:57845706-57845725 | MS.gene068504:intron | 45.0% | |
AAGAACGCAAATGAGCTACG+AGG | - | chr4.2:57845889-57845908 | None:intergenic | 45.0% | |
AATGTAGAATACCGCGTTGC+AGG | + | chr4.2:57846768-57846787 | MS.gene068504:CDS | 45.0% | |
ATGGTAGAGGTTCATCATGG+AGG | - | chr4.2:57846370-57846389 | None:intergenic | 45.0% | |
ATTGTAACACACCTGCAACG+CGG | - | chr4.2:57846782-57846801 | None:intergenic | 45.0% | |
GAATGAGTCAGGGTCTGATA+AGG | - | chr4.2:57845570-57845589 | None:intergenic | 45.0% | |
GGATGAAGCAAATGTGGTTG+TGG | - | chr4.2:57845537-57845556 | None:intergenic | 45.0% | |
GTCGGGATTTGAAAGCGATT+CGG | + | chr4.2:57845090-57845109 | MS.gene068504:CDS | 45.0% | |
GTGTCCCAAAACCGTAAGAT+TGG | + | chr4.2:57844915-57844934 | MS.gene068504:CDS | 45.0% | |
TAAGATTGGAGAGCTTCCCA+AGG | + | chr4.2:57844929-57844948 | MS.gene068504:CDS | 45.0% | |
TCGGGATTTGAAAGCGATTC+GGG | + | chr4.2:57845091-57845110 | MS.gene068504:CDS | 45.0% | |
TGAAATTGGGACTTCTGGCA+CGG | - | chr4.2:57846401-57846420 | None:intergenic | 45.0% | |
TGATTGTGTCTTGGAAGCGA+TGG | + | chr4.2:57845930-57845949 | MS.gene068504:intron | 45.0% | |
TGGGAAGCTCTCCAATCTTA+CGG | - | chr4.2:57844929-57844948 | None:intergenic | 45.0% | |
! | GCTCTCCAATCTTACGGTTT+TGG | - | chr4.2:57844923-57844942 | None:intergenic | 45.0% |
! | TTGAAAGCGATTCGGGACAA+GGG | + | chr4.2:57845098-57845117 | MS.gene068504:CDS | 45.0% |
! | TTTGAAAGCGATTCGGGACA+AGG | + | chr4.2:57845097-57845116 | MS.gene068504:CDS | 45.0% |
!! | GATCTGAAAGCATCTGAGGA+AGG | - | chr4.2:57845311-57845330 | None:intergenic | 45.0% |
!!! | GCTGAAGTTTTGGAAAGCGA+CGG | + | chr4.2:57846980-57846999 | MS.gene068504:CDS | 45.0% |
CGAGGTGCATACACTTTGTC+AGG | + | chr4.2:57846116-57846135 | MS.gene068504:intron | 50.0% | |
GCCGTGAAGTGATTGTGTCT+TGG | + | chr4.2:57845921-57845940 | MS.gene068504:intron | 50.0% | |
TGGAGGAATACTTGGCACGA+CGG | - | chr4.2:57846353-57846372 | None:intergenic | 50.0% | |
TGGGACACCGCATTGTTAGT+TGG | - | chr4.2:57844903-57844922 | None:intergenic | 50.0% | |
! | TGTGGGGTTAGTAGCTACAG+TGG | - | chr4.2:57845519-57845538 | None:intergenic | 50.0% |
AATTGGGACTTCTGGCACGG+AGG | - | chr4.2:57846398-57846417 | None:intergenic | 55.0% | |
CACGGAGGAGTAGATGGTAG+AGG | - | chr4.2:57846383-57846402 | None:intergenic | 55.0% | |
GAGGAATACTTGGCACGACG+GGG | - | chr4.2:57846351-57846370 | None:intergenic | 55.0% | |
GCAGAGTCTGATGGCCACTT+AGG | - | chr4.2:57845603-57845622 | None:intergenic | 55.0% | |
GCATCTGAGGAAGGGCTTAG+AGG | - | chr4.2:57845302-57845321 | None:intergenic | 55.0% | |
GGAGGAATACTTGGCACGAC+GGG | - | chr4.2:57846352-57846371 | None:intergenic | 55.0% | |
TTCTGGCACGGAGGAGTAGA+TGG | - | chr4.2:57846389-57846408 | None:intergenic | 55.0% | |
! | AAGCGATTCGGGACAAGGGA+AGG | + | chr4.2:57845102-57845121 | MS.gene068504:CDS | 55.0% |
AGCGACGGAGCAGTCGTCAT+TGG | + | chr4.2:57846995-57847014 | MS.gene068504:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 57844882 | 57847024 | 57844882 | ID=MS.gene068504 |
chr4.2 | mRNA | 57844882 | 57847024 | 57844882 | ID=MS.gene068504.t1;Parent=MS.gene068504 |
chr4.2 | exon | 57844882 | 57845268 | 57844882 | ID=MS.gene068504.t1.exon1;Parent=MS.gene068504.t1 |
chr4.2 | CDS | 57844882 | 57845268 | 57844882 | ID=cds.MS.gene068504.t1;Parent=MS.gene068504.t1 |
chr4.2 | exon | 57846650 | 57846789 | 57846650 | ID=MS.gene068504.t1.exon2;Parent=MS.gene068504.t1 |
chr4.2 | CDS | 57846650 | 57846789 | 57846650 | ID=cds.MS.gene068504.t1;Parent=MS.gene068504.t1 |
chr4.2 | exon | 57846925 | 57847024 | 57846925 | ID=MS.gene068504.t1.exon3;Parent=MS.gene068504.t1 |
chr4.2 | CDS | 57846925 | 57847024 | 57846925 | ID=cds.MS.gene068504.t1;Parent=MS.gene068504.t1 |
Gene Sequence |
Protein sequence |