AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene068644

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene068644.t1 MTR_5g030770 97.846 325 5 1 1 323 1 325 0.0 646
MS.gene068644.t1 MTR_5g030770 96.000 325 5 2 1 323 1 319 0.0 627
MS.gene068644.t1 MTR_7g076840 72.241 299 14 6 5 303 2 231 5.35e-129 368
MS.gene068644.t1 MTR_3g111290 52.161 347 132 15 1 323 1 337 5.05e-90 272
MS.gene068644.t1 MTR_3g498695 46.798 203 79 7 140 320 287 482 5.93e-41 149
MS.gene068644.t1 MTR_7g083900 45.312 192 80 4 152 320 284 473 8.82e-41 148
MS.gene068644.t1 MTR_3g498695 45.500 200 87 4 140 320 287 483 1.17e-40 148
MS.gene068644.t1 MTR_7g083900 45.641 195 76 6 152 320 284 474 3.97e-40 147
MS.gene068644.t1 MTR_3g030700 41.361 191 93 6 139 314 184 370 1.83e-34 129
MS.gene068644.t1 MTR_2g081040 39.785 186 93 5 152 318 175 360 3.86e-33 125
MS.gene068644.t1 MTR_7g065690 48.649 148 36 6 30 177 26 133 7.69e-33 119
MS.gene068644.t1 MTR_3g104100 39.560 182 91 5 152 314 193 374 3.62e-32 123
MS.gene068644.t1 MTR_1g112680 28.505 214 105 5 142 313 305 512 1.79e-19 89.4
MS.gene068644.t1 MTR_5g014640 26.630 184 125 3 140 313 140 323 4.71e-15 75.1
MS.gene068644.t1 MTR_8g064700 27.513 189 121 3 140 314 230 416 1.10e-14 74.7
MS.gene068644.t1 MTR_1g072320 31.527 203 108 7 138 312 449 648 1.10e-14 75.1
MS.gene068644.t1 MTR_8g024790 30.508 177 103 6 152 316 289 457 3.55e-14 73.2
MS.gene068644.t1 MTR_2g038040 33.544 158 83 4 150 285 48 205 5.11e-14 70.9
MS.gene068644.t1 MTR_2g084280 30.682 176 103 5 147 309 126 295 5.44e-14 72.0
MS.gene068644.t1 MTR_4g092700 24.068 295 181 10 32 312 60 325 7.37e-14 71.6
MS.gene068644.t1 MTR_2g104560 26.984 189 117 5 143 314 41 225 1.89e-13 68.9
MS.gene068644.t1 MTR_4g057270 53.448 58 27 0 153 210 148 205 2.12e-13 70.5
MS.gene068644.t1 MTR_5g030430 28.221 163 97 2 151 293 490 652 2.72e-13 70.9
MS.gene068644.t1 MTR_8g027495 29.167 144 93 3 147 286 453 591 3.51e-13 70.5
MS.gene068644.t1 MTR_2g010450 27.950 161 100 4 145 289 162 322 4.16e-13 69.7
MS.gene068644.t1 MTR_5g014520 30.464 151 96 2 145 286 148 298 9.35e-13 68.6
MS.gene068644.t1 MTR_8g024770 30.872 149 86 4 152 285 277 423 9.82e-13 68.9
MS.gene068644.t1 MTR_7g096350 35.789 95 59 1 151 243 352 446 1.79e-12 68.2
MS.gene068644.t1 MTR_7g117670 28.261 138 96 2 151 286 399 535 2.34e-12 68.2
MS.gene068644.t1 MTR_8g067280 29.375 160 93 4 151 290 459 618 4.18e-12 67.4
MS.gene068644.t1 MTR_6g047550 41.860 86 44 3 131 212 148 231 3.56e-11 63.2
MS.gene068644.t1 MTR_3g070970 28.205 195 117 7 126 312 51 230 3.88e-11 62.8
MS.gene068644.t1 MTR_4g066460 32.500 160 92 4 141 289 142 296 4.05e-11 63.5
MS.gene068644.t1 MTR_4g066380 43.478 69 39 0 141 209 140 208 9.43e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene068644.t1 AT5G65640 68.657 201 57 2 129 323 151 351 1.39e-84 259
MS.gene068644.t1 AT5G10570 48.235 340 121 11 11 323 4 315 2.13e-77 239
MS.gene068644.t1 AT1G12860 46.739 184 83 3 152 320 265 448 2.18e-41 149
MS.gene068644.t1 AT3G26744 45.745 188 83 2 152 320 305 492 2.39e-40 147
MS.gene068644.t1 AT3G26744 45.745 188 83 2 152 320 305 492 2.39e-40 147
MS.gene068644.t1 AT3G26744 45.745 188 83 2 152 320 305 492 2.39e-40 147
MS.gene068644.t1 AT1G12860 48.750 160 67 3 152 296 265 424 3.47e-37 138
MS.gene068644.t1 AT3G26744 47.561 164 67 2 152 296 305 468 2.25e-36 136
MS.gene068644.t1 AT5G65640 67.227 119 32 3 133 245 155 272 7.25e-36 131
MS.gene068644.t1 AT2G16910 33.663 202 97 7 153 319 313 512 4.41e-21 94.4
MS.gene068644.t1 AT4G09820 30.058 173 106 4 143 314 352 510 2.50e-17 82.8
MS.gene068644.t1 AT4G29930 35.036 137 83 2 153 284 53 188 9.60e-16 75.5
MS.gene068644.t1 AT4G29930 36.232 138 77 4 153 284 53 185 3.16e-15 73.9
MS.gene068644.t1 AT5G46760 31.319 182 106 5 151 317 412 589 3.16e-15 76.6
MS.gene068644.t1 AT4G29930 35.036 137 80 3 153 284 53 185 4.45e-15 73.9
MS.gene068644.t1 AT4G29930 51.667 60 29 0 153 212 53 112 2.68e-14 70.5
MS.gene068644.t1 AT4G17880 29.814 161 98 3 151 299 413 570 3.56e-14 73.6
MS.gene068644.t1 AT4G29930 51.667 60 29 0 153 212 53 112 6.73e-14 70.9
MS.gene068644.t1 AT4G29930 51.667 60 29 0 153 212 53 112 8.45e-14 70.9
MS.gene068644.t1 AT4G29930 51.667 60 29 0 153 212 53 112 8.45e-14 70.9
MS.gene068644.t1 AT2G46510 37.143 105 57 3 151 255 392 487 8.61e-14 72.4
MS.gene068644.t1 AT4G37850 29.064 203 124 6 100 284 93 293 1.74e-13 70.5
MS.gene068644.t1 AT4G37850 29.064 203 124 6 100 284 93 293 1.74e-13 70.5
MS.gene068644.t1 AT2G28160 44.444 72 35 1 139 210 121 187 1.21e-12 68.2
MS.gene068644.t1 AT2G28160 44.444 72 35 1 139 210 121 187 1.36e-12 67.8
MS.gene068644.t1 AT1G10610 42.308 78 43 1 149 226 229 304 7.11e-12 66.2
MS.gene068644.t1 AT1G10610 42.308 78 43 1 149 226 162 237 8.35e-12 65.9
MS.gene068644.t1 AT1G10610 42.308 78 43 1 149 226 259 334 9.31e-12 65.9
MS.gene068644.t1 AT2G22760 28.105 153 94 4 155 293 120 270 1.14e-11 64.7
MS.gene068644.t1 AT5G57150 28.221 163 99 1 153 297 53 215 1.20e-11 64.3
MS.gene068644.t1 AT5G57150 28.395 162 98 1 153 296 54 215 1.41e-11 63.5
MS.gene068644.t1 AT5G57150 29.139 151 89 1 153 285 53 203 1.53e-11 63.5
MS.gene068644.t1 AT2G22760 28.105 153 94 4 155 293 120 270 1.85e-11 64.3
MS.gene068644.t1 AT5G57150 29.139 151 89 1 153 285 54 204 1.97e-11 63.2
MS.gene068644.t1 AT4G16430 36.905 84 50 1 155 235 321 404 2.20e-11 65.1
MS.gene068644.t1 AT5G57150 29.139 151 89 2 153 285 54 204 3.77e-11 63.2
MS.gene068644.t1 AT1G63650 30.435 161 80 5 155 286 406 563 4.44e-11 64.3
MS.gene068644.t1 AT1G63650 30.435 161 80 5 155 286 406 563 4.44e-11 64.3
MS.gene068644.t1 AT1G63650 30.435 161 80 5 155 286 406 563 4.44e-11 64.3
MS.gene068644.t1 AT1G32640 45.763 59 32 0 151 209 449 507 5.85e-11 63.9

Find 66 sgRNAs with CRISPR-Local

Find 104 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAATCACCTTGCTGATCTT+AGG 0.222682 5.1:+21067734 None:intergenic
AGGCTGTCCTTCAACCCTTT+TGG 0.223211 5.1:+21067832 None:intergenic
AGTGATTGCTTTATCTCTTC+AGG 0.235636 5.1:+21066524 None:intergenic
ACTCCTTAGAAATTTCTAAA+AGG 0.276635 5.1:+21067271 None:intergenic
CATAGATTTGAATGTCCTTA+TGG 0.286074 5.1:-21068076 MS.gene068644:CDS
TTTACCACAACAAGAAAGTA+TGG 0.308343 5.1:-21067984 MS.gene068644:CDS
TTCCCATGTGTTTAGGTAGA+TGG 0.318517 5.1:-21066566 MS.gene068644:intron
TCATCATACCCTTATCTTGA+TGG 0.320494 5.1:-21068043 MS.gene068644:CDS
CTTTCTTGTTGTGGTAAAAC+TGG 0.323789 5.1:+21067989 None:intergenic
AGATAAAGCAATCACTATTC+AGG 0.330105 5.1:-21066517 MS.gene068644:CDS
TTTCTTACCATTACTTCATT+TGG 0.330225 5.1:+21067243 None:intergenic
CAAGAAAGTATGGAAGAGTT+TGG 0.335442 5.1:-21067974 MS.gene068644:CDS
GAGTCAAAGGTCCAACCATT+AGG 0.336189 5.1:+21068169 None:intergenic
ATGGAAGAGTTTGGATTTGT+TGG 0.361028 5.1:-21067965 MS.gene068644:CDS
CATTCAAATCTATGGTCTAA+TGG 0.372381 5.1:+21068085 None:intergenic
TAGTAAGTTACAAGAAGAAA+TGG 0.377782 5.1:-21067319 MS.gene068644:CDS
CAGTAACAATCCTGGCTTTG+TGG 0.397442 5.1:+21067068 None:intergenic
GAATCACCTTGCTGATCTTA+GGG 0.398992 5.1:+21067735 None:intergenic
AATGAGTTACTACTCCCTAA+TGG 0.409168 5.1:-21068184 MS.gene068644:CDS
CATAAGGACATTCAAATCTA+TGG 0.410090 5.1:+21068077 None:intergenic
ACAGCCTTCAAAGAATCTTA+TGG 0.411193 5.1:-21067816 MS.gene068644:CDS
ATGGACAGGACATCAATTCT+AGG 0.415879 5.1:-21067381 MS.gene068644:CDS
ATCTGCTGTGCCACAAAGCC+AGG 0.421676 5.1:-21067078 MS.gene068644:CDS
GCAAATGAAGGGTTTAAAGA+TGG 0.426120 5.1:+21068121 None:intergenic
CTATTCAGGAATGCAGGTTA+TGG 0.429722 5.1:-21066503 MS.gene068644:CDS
GTGATTGCTTTATCTCTTCA+GGG 0.432133 5.1:+21066525 None:intergenic
GAAGAAAGCGTTTGAATGAC+AGG 0.437266 5.1:-21067781 MS.gene068644:CDS
TCAGCCATAAGATTCTTTGA+AGG 0.448137 5.1:+21067812 None:intergenic
AGTCAAAGGTCCAACCATTA+GGG 0.456761 5.1:+21068170 None:intergenic
AAAATGGAACTTTCTCAACT+TGG 0.469304 5.1:-21068268 MS.gene068644:CDS
ATGACAGGCTTTCCATGCTT+AGG 0.479470 5.1:-21067766 MS.gene068644:CDS
GCCAAATCCAAAAGGGTTGA+AGG 0.482278 5.1:-21067839 MS.gene068644:CDS
ACTGAGAATCCATCAAGATA+AGG 0.498561 5.1:+21068034 None:intergenic
CTGAGAATCCATCAAGATAA+GGG 0.499837 5.1:+21068035 None:intergenic
TAAGTTACAAGAAGAAATGG+AGG 0.505778 5.1:-21067316 MS.gene068644:CDS
ACATGAAAGAGCTTCTAGAA+AGG 0.506584 5.1:-21067344 MS.gene068644:CDS
AGATACTGATTCTTGTGTCC+TGG 0.512516 5.1:+21067097 None:intergenic
TCTTCCATACTTTCTTGTTG+TGG 0.521400 5.1:+21067980 None:intergenic
ACATGGAATACTTTATCCAC+TGG 0.522465 5.1:-21068211 MS.gene068644:CDS
CAATCACTATTCAGGAATGC+AGG 0.523750 5.1:-21066509 MS.gene068644:CDS
TGATGTTGAGAGGAGAGACC+AGG 0.532244 5.1:-21067115 MS.gene068644:CDS
TTCAGGAATGCAGGTTATGG+TGG 0.533157 5.1:-21066500 MS.gene068644:CDS
GATGATGCATCAGTTCCATA+AGG 0.540398 5.1:+21068061 None:intergenic
GTTAAAGCCAAATGAAGTAA+TGG 0.545862 5.1:-21067250 MS.gene068644:CDS
AGAATCTTATGGCTGAAAGA+AGG 0.549094 5.1:-21067805 MS.gene068644:CDS
TTATGGTGGGAGGTGTCTCT+AGG 0.550677 5.1:-21066486 None:intergenic
TTGTTGGAAGTGAGAACAAG+AGG 0.555475 5.1:-21067949 MS.gene068644:CDS
AGTTACTACTCCCTAATGGT+TGG 0.559379 5.1:-21068180 MS.gene068644:CDS
CAAGAAGAAATGGAGGAAGA+AGG 0.564987 5.1:-21067309 MS.gene068644:CDS
GTGAACACATTAGAAGCATT+AGG 0.568569 5.1:-21067039 MS.gene068644:CDS
ACTGTTGACAGTAACAATCC+TGG 0.569200 5.1:+21067060 None:intergenic
GTTGAGAATGAAGCAAATGA+AGG 0.578645 5.1:+21068109 None:intergenic
TAAAATCAGCTGCAAAGTTG+AGG 0.582223 5.1:-21067915 MS.gene068644:CDS
TAACACACTGGTGAATCTCA+AGG 0.606173 5.1:+21067016 None:intergenic
TCAGGAATGCAGGTTATGGT+GGG 0.610095 5.1:-21066499 MS.gene068644:CDS
TTGAGAATGAAGCAAATGAA+GGG 0.614806 5.1:+21068110 None:intergenic
AATGGTAAGAAATTCCCCTA+AGG 0.619045 5.1:-21067232 MS.gene068644:intron
TGAAACTGCTTATAACACAC+TGG 0.622427 5.1:+21067004 None:intergenic
GGTGCTGAATCATCAAACTC+AGG 0.624297 5.1:+21068010 None:intergenic
AGGGACAATTGACCTAAGCA+TGG 0.627542 5.1:+21067754 None:intergenic
TAGTAACTCATTCAAACCAG+TGG 0.629735 5.1:+21068195 None:intergenic
GGAAATAAACCATACCTTAG+GGG 0.645486 5.1:+21067218 None:intergenic
GGAATGCAGGTTATGGTGGG+AGG 0.648346 5.1:-21066496 MS.gene068644:CDS
TAGCTCCAAGAAAAGACACA+TGG 0.656108 5.1:-21068228 MS.gene068644:CDS
ATTGCAAGCATCTTGCTCAG+AGG 0.660283 5.1:-21066971 MS.gene068644:intron
AATTGTCCCTAAGATCAGCA+AGG 0.709185 5.1:-21067741 MS.gene068644:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTACATTTATTCATAAACT+TGG + chr5.1:21067586-21067605 None:intergenic 15.0%
!! TTATGAATAAATGTAATGAA+TGG - chr5.1:21067589-21067608 MS.gene068644:intron 15.0%
!!! AAAATGTAAATTTTGTAAGA+TGG - chr5.1:21067352-21067371 MS.gene068644:CDS 15.0%
!! ATAATTGATCATGAAAAGTT+TGG - chr5.1:21067906-21067925 MS.gene068644:CDS 20.0%
!! CTGAACATAAATACATATAT+CGG + chr5.1:21067141-21067160 None:intergenic 20.0%
!!! AAACCTTTTAGAAATTTCTA+AGG - chr5.1:21067478-21067497 MS.gene068644:intron 20.0%
!!! CGTAGTTTTTAATAAAATGA+CGG + chr5.1:21067867-21067886 None:intergenic 20.0%
! AATCGAATGTAATAAATTCC+AGG + chr5.1:21068023-21068042 None:intergenic 25.0%
! ACTCCTTAGAAATTTCTAAA+AGG + chr5.1:21067484-21067503 None:intergenic 25.0%
! TAGTAAGTTACAAGAAGAAA+TGG - chr5.1:21067433-21067452 MS.gene068644:intron 25.0%
! TTTCTTACCATTACTTCATT+TGG + chr5.1:21067512-21067531 None:intergenic 25.0%
!! ATTTTCATCAAATGAGTCAA+AGG + chr5.1:21066599-21066618 None:intergenic 25.0%
!! TCTATAATTAATTTTTCGCC+TGG - chr5.1:21068002-21068021 MS.gene068644:CDS 25.0%
!!! TAGTCTTTTTTTTGGTTATG+CGG + chr5.1:21068103-21068122 None:intergenic 25.0%
AACCATGCAAACAATTATTG+AGG + chr5.1:21068130-21068149 None:intergenic 30.0%
AAGGAAATAAACCATACCTT+AGG + chr5.1:21067539-21067558 None:intergenic 30.0%
AGAAAAAAGCCAAATCCAAA+AGG - chr5.1:21066905-21066924 MS.gene068644:intron 30.0%
AGATAAAGCAATCACTATTC+AGG - chr5.1:21068235-21068254 MS.gene068644:CDS 30.0%
AGGAAATAAACCATACCTTA+GGG + chr5.1:21067538-21067557 None:intergenic 30.0%
CATAAGGACATTCAAATCTA+TGG + chr5.1:21066678-21066697 None:intergenic 30.0%
CATAGATTTGAATGTCCTTA+TGG - chr5.1:21066676-21066695 MS.gene068644:intron 30.0%
CATATTATTCCCATGTGTTT+AGG - chr5.1:21068179-21068198 MS.gene068644:CDS 30.0%
CATTCAAATCTATGGTCTAA+TGG + chr5.1:21066670-21066689 None:intergenic 30.0%
GAAAAAAGCCAAATCCAAAA+GGG - chr5.1:21066906-21066925 MS.gene068644:intron 30.0%
GATTATGCATTAGTTGTTCA+AGG + chr5.1:21067558-21067577 None:intergenic 30.0%
GTTAAAGCCAAATGAAGTAA+TGG - chr5.1:21067502-21067521 MS.gene068644:intron 30.0%
TAAGTTACAAGAAGAAATGG+AGG - chr5.1:21067436-21067455 MS.gene068644:intron 30.0%
TTGAGAATGAAGCAAATGAA+GGG + chr5.1:21066645-21066664 None:intergenic 30.0%
TTTACCACAACAAGAAAGTA+TGG - chr5.1:21066768-21066787 MS.gene068644:intron 30.0%
! CATAGTGTGTGTTCTAATTT+TGG - chr5.1:21067230-21067249 MS.gene068644:intron 30.0%
! GAAACTCCAGTTTTTAACAT+GGG - chr5.1:21066871-21066890 MS.gene068644:intron 30.0%
! GTAAATTTTGTAAGATGGAC+AGG - chr5.1:21067357-21067376 MS.gene068644:CDS 30.0%
! TGAAACTCCAGTTTTTAACA+TGG - chr5.1:21066870-21066889 MS.gene068644:intron 30.0%
!! TTTTTCAGTTTGATGTTGAG+AGG - chr5.1:21067627-21067646 MS.gene068644:intron 30.0%
AATGAGTTACTACTCCCTAA+TGG - chr5.1:21066568-21066587 MS.gene068644:intron 35.0%
AATGGTAAGAAATTCCCCTA+AGG - chr5.1:21067520-21067539 MS.gene068644:intron 35.0%
ACAGCCTTCAAAGAATCTTA+TGG - chr5.1:21066936-21066955 MS.gene068644:intron 35.0%
ACATGGAATACTTTATCCAC+TGG - chr5.1:21066541-21066560 MS.gene068644:CDS 35.0%
ACTGAGAATCCATCAAGATA+AGG + chr5.1:21066721-21066740 None:intergenic 35.0%
AGAATCTTATGGCTGAAAGA+AGG - chr5.1:21066947-21066966 MS.gene068644:intron 35.0%
AGTAAAACCCTAAGCATGTT+CGG - chr5.1:21067806-21067825 MS.gene068644:CDS 35.0%
AGTGATTGCTTTATCTCTTC+AGG + chr5.1:21068231-21068250 None:intergenic 35.0%
ATGGAAGAGTTTGGATTTGT+TGG - chr5.1:21066787-21066806 MS.gene068644:intron 35.0%
CACAAACCCATGTTAAAAAC+TGG + chr5.1:21066880-21066899 None:intergenic 35.0%
CTGAGAATCCATCAAGATAA+GGG + chr5.1:21066720-21066739 None:intergenic 35.0%
GCAAATGAAGGGTTTAAAGA+TGG + chr5.1:21066634-21066653 None:intergenic 35.0%
GGAAATAAACCATACCTTAG+GGG + chr5.1:21067537-21067556 None:intergenic 35.0%
GTGATTGCTTTATCTCTTCA+GGG + chr5.1:21068230-21068249 None:intergenic 35.0%
GTTGAGAATGAAGCAAATGA+AGG + chr5.1:21066646-21066665 None:intergenic 35.0%
TAAAATCAGCTGCAAAGTTG+AGG - chr5.1:21066837-21066856 MS.gene068644:intron 35.0%
TAAGAAATTCCCCTAAGGTA+TGG - chr5.1:21067525-21067544 MS.gene068644:intron 35.0%
TAGTAACTCATTCAAACCAG+TGG + chr5.1:21066560-21066579 None:intergenic 35.0%
TATCAATCCGAACATGCTTA+GGG + chr5.1:21067816-21067835 None:intergenic 35.0%
TCAGCCATAAGATTCTTTGA+AGG + chr5.1:21066943-21066962 None:intergenic 35.0%
TCATCATACCCTTATCTTGA+TGG - chr5.1:21066709-21066728 MS.gene068644:intron 35.0%
TCTTCCATACTTTCTTGTTG+TGG + chr5.1:21066775-21066794 None:intergenic 35.0%
TGAAACTGCTTATAACACAC+TGG + chr5.1:21067751-21067770 None:intergenic 35.0%
! AACTACGCTTTTGAGCTTTA+AGG - chr5.1:21067880-21067899 MS.gene068644:CDS 35.0%
! ACATGAAAGAGCTTCTAGAA+AGG - chr5.1:21067408-21067427 MS.gene068644:intron 35.0%
! CAAGAAAGTATGGAAGAGTT+TGG - chr5.1:21066778-21066797 MS.gene068644:intron 35.0%
! CATTGACTAGCACTTGTATT+TGG - chr5.1:21067292-21067311 MS.gene068644:CDS 35.0%
! CTTTCTTGTTGTGGTAAAAC+TGG + chr5.1:21066766-21066785 None:intergenic 35.0%
! GTATTCCATGTGTCTTTTCT+TGG + chr5.1:21066532-21066551 None:intergenic 35.0%
! GTTTTTAACATGGGTTTGTG+TGG - chr5.1:21066880-21066899 MS.gene068644:intron 35.0%
!! ACTACGCTTTTGAGCTTTAA+GGG - chr5.1:21067881-21067900 MS.gene068644:CDS 35.0%
!! GTGAACACATTAGAAGCATT+AGG - chr5.1:21067713-21067732 MS.gene068644:intron 35.0%
!! TTCTCAACTTGGTTTTCTTG+AGG - chr5.1:21066495-21066514 MS.gene068644:CDS 35.0%
!!! GAGGCGAATAGTCTTTTTTT+TGG + chr5.1:21068111-21068130 None:intergenic 35.0%
AATTGTCCCTAAGATCAGCA+AGG - chr5.1:21067011-21067030 MS.gene068644:CDS 40.0%
ACTGTTGACAGTAACAATCC+TGG + chr5.1:21067695-21067714 None:intergenic 40.0%
AGTCAAAGGTCCAACCATTA+GGG + chr5.1:21066585-21066604 None:intergenic 40.0%
AGTTACTACTCCCTAATGGT+TGG - chr5.1:21066572-21066591 MS.gene068644:intron 40.0%
ATGGACAGGACATCAATTCT+AGG - chr5.1:21067371-21067390 MS.gene068644:CDS 40.0%
CAAGAAGAAATGGAGGAAGA+AGG - chr5.1:21067443-21067462 MS.gene068644:intron 40.0%
CAATCACTATTCAGGAATGC+AGG - chr5.1:21068243-21068262 MS.gene068644:CDS 40.0%
CGCCTCAATAATTGTTTGCA+TGG - chr5.1:21068125-21068144 MS.gene068644:CDS 40.0%
CTATCAATCCGAACATGCTT+AGG + chr5.1:21067817-21067836 None:intergenic 40.0%
CTATTCAGGAATGCAGGTTA+TGG - chr5.1:21068249-21068268 MS.gene068644:CDS 40.0%
GAATCACCTTGCTGATCTTA+GGG + chr5.1:21067020-21067039 None:intergenic 40.0%
GACCATCTACCTAAACACAT+GGG + chr5.1:21068191-21068210 None:intergenic 40.0%
GATGATGCATCAGTTCCATA+AGG + chr5.1:21066694-21066713 None:intergenic 40.0%
TAACACACTGGTGAATCTCA+AGG + chr5.1:21067739-21067758 None:intergenic 40.0%
TAGCTCCAAGAAAAGACACA+TGG - chr5.1:21066524-21066543 MS.gene068644:CDS 40.0%
TGAATCACCTTGCTGATCTT+AGG + chr5.1:21067021-21067040 None:intergenic 40.0%
TGACCATCTACCTAAACACA+TGG + chr5.1:21068192-21068211 None:intergenic 40.0%
TTCCCATGTGTTTAGGTAGA+TGG - chr5.1:21068186-21068205 MS.gene068644:CDS 40.0%
TTGTTGGAAGTGAGAACAAG+AGG - chr5.1:21066803-21066822 MS.gene068644:intron 40.0%
! TCCTTCAACCCTTTTGGATT+TGG + chr5.1:21066917-21066936 None:intergenic 40.0%
!! AGATACTGATTCTTGTGTCC+TGG + chr5.1:21067658-21067677 None:intergenic 40.0%
!! GAAGAAAGCGTTTGAATGAC+AGG - chr5.1:21066971-21066990 MS.gene068644:intron 40.0%
AGGGACAATTGACCTAAGCA+TGG + chr5.1:21067001-21067020 None:intergenic 45.0%
ATGACAGGCTTTCCATGCTT+AGG - chr5.1:21066986-21067005 MS.gene068644:CDS 45.0%
ATTGCAAGCATCTTGCTCAG+AGG - chr5.1:21067781-21067800 MS.gene068644:CDS 45.0%
GAGTCAAAGGTCCAACCATT+AGG + chr5.1:21066586-21066605 None:intergenic 45.0%
GCCAAATCCAAAAGGGTTGA+AGG - chr5.1:21066913-21066932 MS.gene068644:intron 45.0%
TCAGGAATGCAGGTTATGGT+GGG - chr5.1:21068253-21068272 MS.gene068644:CDS 45.0%
TCGAGTATCAGTGTTCTGTC+TGG - chr5.1:21067191-21067210 MS.gene068644:intron 45.0%
TTCAGGAATGCAGGTTATGG+TGG - chr5.1:21068252-21068271 MS.gene068644:CDS 45.0%
! GGTGCTGAATCATCAAACTC+AGG + chr5.1:21066745-21066764 None:intergenic 45.0%
!! CAGTAACAATCCTGGCTTTG+TGG + chr5.1:21067687-21067706 None:intergenic 45.0%
TGATGTTGAGAGGAGAGACC+AGG - chr5.1:21067637-21067656 MS.gene068644:intron 50.0%
! AGGCTGTCCTTCAACCCTTT+TGG + chr5.1:21066923-21066942 None:intergenic 50.0%
ATCTGCTGTGCCACAAAGCC+AGG - chr5.1:21067674-21067693 MS.gene068644:intron 55.0%
! GGAATGCAGGTTATGGTGGG+AGG - chr5.1:21068256-21068275 MS.gene068644:CDS 55.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 21066487 21068287 21066487 ID=MS.gene068644
chr5.1 mRNA 21066487 21068287 21066487 ID=MS.gene068644.t1;Parent=MS.gene068644
chr5.1 exon 21067742 21068287 21067742 ID=MS.gene068644.t1.exon1;Parent=MS.gene068644.t1
chr5.1 CDS 21067742 21068287 21067742 ID=cds.MS.gene068644.t1;Parent=MS.gene068644.t1
chr5.1 exon 21067233 21067403 21067233 ID=MS.gene068644.t1.exon2;Parent=MS.gene068644.t1
chr5.1 CDS 21067233 21067403 21067233 ID=cds.MS.gene068644.t1;Parent=MS.gene068644.t1
chr5.1 exon 21066972 21067139 21066972 ID=MS.gene068644.t1.exon3;Parent=MS.gene068644.t1
chr5.1 CDS 21066972 21067139 21066972 ID=cds.MS.gene068644.t1;Parent=MS.gene068644.t1
chr5.1 exon 21066487 21066573 21066487 ID=MS.gene068644.t1.exon4;Parent=MS.gene068644.t1
chr5.1 CDS 21066487 21066573 21066487 ID=cds.MS.gene068644.t1;Parent=MS.gene068644.t1
Gene Sequence

>MS.gene068644

ATGGAACTTTCTCAACTTGGTTTTCTTGAGGAGCTACTAGCTCCAAGAAAAGACACATGGAATACTTTATCCACTGGTTTGAATGAGTTACTACTCCCTAATGGTTGGACCTTTGACTCATTTGATGAAAATCTTCTCATCAATCCATCTTTAAACCCTTCATTTGCTTCATTCTCAACACCATTAGACCATAGATTTGAATGTCCTTATGGAACTGATGCATCATCATACCCTTATCTTGATGGATTCTCAGTTCCTGAGTTTGATGATTCAGCACCAGTTTTACCACAACAAGAAAGTATGGAAGAGTTTGGATTTGTTGGAAGTGAGAACAAGAGGTTTGAAGAGAGTAAAATCAGCTGCAAAGTTGAGGAACAAGTTAGTGAAACTCCAGTTTTTAACATGGGTTTGTGTGGTGAGAAAAAAGCCAAATCCAAAAGGGTTGAAGGACAGCCTTCAAAGAATCTTATGGCTGAAAGAAGGAGAAGAAAGCGTTTGAATGACAGGCTTTCCATGCTTAGGTCAATTGTCCCTAAGATCAGCAAGGTGATTCAATATATATAATGTGTATGTATGTTTGTGTCTATGTTTATGTTGTCTCGCTCTTACACTTCAGATTGAAGATATATATGTCTGATGTTCGACACGACACCGATATATGTATTTATGTTCAGTTATTCTTTTTTGTCAAATTATTATCAGTGTCGAGTATCAGTGTTCTGTCTGGTGTTAATGTAAGTGTTCATAGTGTGTGTTCTAATTTTGGTACAAATGTTTGTGTTTTTTAGCTTATTCTTATTATTATCATTGACTAGCACTTGTATTTGGTATTTGATTTTGATATAAATTCATTTGAACTAACAAGAAAATGTAAATTTTGTAAGATGGACAGGACATCAATTCTAGGAGATACAATTGATTACATGAAAGAGCTTCTAGAAAGGATTAGTAAGTTACAAGAAGAAATGGAGGAAGAAGGAACAAATCAGATAAACCTTTTAGAAATTTCTAAGGAGTTAAAGCCAAATGAAGTAATGGTAAGAAATTCCCCTAAGGTATGGTTTATTTCCTTGAACAACTAATGCATAATCATAGACCAAGTTTATGAATAAATGTAATGAATGGAATGTTTTCTTTTTCTTTTTCAGTTTGATGTTGAGAGGAGAGACCAGGACACAAGAATCAGTATCTGCTGTGCCACAAAGCCAGGATTGTTACTGTCAACAGTGAACACATTAGAAGCATTAGGCCTTGAGATTCACCAGTGTGTTATAAGCAGTTTCAATGATTTTTCATTGCAAGCATCTTGCTCAGAGGTTAGTAAAACCCTAAGCATGTTCGGATTGATAGCGAATTTGTCAGAATTACATTGTGTCGCCGTCATTTTATTAAAAACTACGCTTTTGAGCTTTAAGGGTTATAATTGATCATGAAAAGTTTGGATGTTTGCTAGTAGAATTGCTTTTGTCTTCATAATCGATTCTAATTTGAAGTTAGAATTTAGCGTTTTTTTTCTCTATAATTAATTTTTCGCCTGGAATTTATTACATTCGATTCAATTTTAGTCAGAATCAATTTTCTTGAATCAATTAATTCAAGATCAATTTTTGTGACCGCATAACCAAAAAAAAGACTATTCGCCTCAATAATTGTTTGCATGGTTAAAATAAAACATGTTCATACTTCTTTTAACATATTATTCCCATGTGTTTAGGTAGATGGTCAGAGAAATTGTATGAACCCTGAAGAGATAAAGCAATCACTATTCAGGAATGCAGGTTATGGTGGGAGGTGTCTCTAG
Protein sequence

>MS.gene068644.t1

MELSQLGFLEELLAPRKDTWNTLSTGLNELLLPNGWTFDSFDENLLINPSLNPSFASFSTPLDHRFECPYGTDASSYPYLDGFSVPEFDDSAPVLPQQESMEEFGFVGSENKRFEESKISCKVEEQVSETPVFNMGLCGEKKAKSKRVEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERISKLQEEMEEEGTNQINLLEISKELKPNEVMVRNSPKFDVERRDQDTRISICCATKPGLLLSTVNTLEALGLEIHQCVISSFNDFSLQASCSEVDGQRNCMNPEEIKQSLFRNAGYGGRCL