AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene068854

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene068854.t1 MTR_3g452660 90.940 298 19 4 1 297 1 291 2.80e-179 496
MS.gene068854.t1 MTR_5g017950 61.310 168 57 3 2 169 3 162 1.42e-59 193
MS.gene068854.t1 MTR_3g073690 74.576 118 28 2 1 117 2 118 8.63e-56 179
MS.gene068854.t1 MTR_4g105170 56.552 145 58 2 5 146 9 151 1.22e-48 160
MS.gene068854.t1 MTR_7g033800 66.667 108 36 0 4 111 8 115 3.37e-47 156
MS.gene068854.t1 MTR_6g005070 65.455 110 38 0 2 111 4 113 6.16e-47 154
MS.gene068854.t1 MTR_3g077240 65.179 112 39 0 2 113 5 116 7.59e-47 156
MS.gene068854.t1 MTR_8g040900 69.091 110 34 0 1 110 1 110 6.73e-46 155
MS.gene068854.t1 MTR_5g083230 50.676 148 60 3 5 149 4 141 5.33e-45 150
MS.gene068854.t1 MTR_6g005080 63.551 107 39 0 4 110 7 113 1.84e-44 148
MS.gene068854.t1 MTR_3g071590 45.695 151 71 2 3 152 4 144 4.92e-42 142
MS.gene068854.t1 MTR_3g031660 55.140 107 48 0 1 107 1 107 9.63e-41 140
MS.gene068854.t1 MTR_4g083680 60.396 101 40 0 6 106 14 114 9.84e-40 137
MS.gene068854.t1 MTR_5g083960 55.963 109 48 0 4 112 36 144 1.24e-39 137
MS.gene068854.t1 MTR_8g079660 38.605 215 107 5 7 217 8 201 1.98e-39 139
MS.gene068854.t1 MTR_3g094690 57.009 107 46 0 6 112 46 152 3.44e-39 137
MS.gene068854.t1 MTR_3g071420 58.824 102 42 0 4 105 11 112 2.89e-38 134
MS.gene068854.t1 MTR_5g083010 56.190 105 46 0 4 108 8 112 1.04e-37 132
MS.gene068854.t1 MTR_2g068760 53.704 108 50 0 6 113 12 119 1.72e-37 130
MS.gene068854.t1 MTR_8g079620 38.174 241 118 7 7 237 8 227 2.66e-37 133
MS.gene068854.t1 MTR_3g094690 56.075 107 46 1 6 112 46 151 3.29e-37 132
MS.gene068854.t1 MTR_2g093310 48.462 130 64 1 6 132 32 161 4.92e-37 131
MS.gene068854.t1 MTR_1g070220 59.048 105 42 1 3 106 11 115 8.29e-36 128
MS.gene068854.t1 MTR_4g060950 45.113 133 69 2 6 137 23 152 4.13e-34 123
MS.gene068854.t1 MTR_7g096530 53.448 116 46 2 1 108 1 116 5.47e-34 124
MS.gene068854.t1 MTR_1g095850 52.885 104 49 0 8 111 73 176 6.33e-34 124
MS.gene068854.t1 MTR_5g075020 56.604 106 46 0 6 111 42 147 1.14e-33 123
MS.gene068854.t1 MTR_5g075020 56.604 106 46 0 6 111 46 151 2.07e-33 122
MS.gene068854.t1 MTR_7g028905 49.091 110 56 0 6 115 4 113 3.35e-33 118
MS.gene068854.t1 MTR_5g093010 43.662 142 77 2 8 148 6 145 3.64e-33 119
MS.gene068854.t1 MTR_8g079580 40.000 190 86 6 7 192 8 173 4.19e-33 121
MS.gene068854.t1 MTR_7g096610 50.877 114 55 1 1 113 2 115 4.08e-32 119
MS.gene068854.t1 MTR_8g036085 52.336 107 50 1 7 112 23 129 1.52e-31 117
MS.gene068854.t1 MTR_7g074990 55.882 102 44 1 7 107 20 121 1.77e-31 117
MS.gene068854.t1 MTR_5g080470 37.725 167 89 5 1 159 1 160 9.91e-31 114
MS.gene068854.t1 MTR_1g070205 45.385 130 69 2 7 134 12 141 1.27e-30 115
MS.gene068854.t1 MTR_8g036105 50.893 112 54 1 7 117 18 129 6.03e-30 113
MS.gene068854.t1 MTR_6g027710 45.299 117 60 2 6 118 39 155 1.07e-28 110
MS.gene068854.t1 MTR_7g075230 52.778 108 48 2 7 111 12 119 3.11e-28 108
MS.gene068854.t1 MTR_6g011250 42.105 133 76 1 1 132 3 135 1.32e-27 105
MS.gene068854.t1 MTR_6g027700 42.991 107 60 1 1 106 1 107 9.56e-26 101
MS.gene068854.t1 MTR_6g011200 43.925 107 55 2 5 108 7 111 4.10e-24 98.6
MS.gene068854.t1 MTR_6g011230 41.584 101 59 0 4 104 8 108 1.55e-23 95.9
MS.gene068854.t1 MTR_4g099230 41.176 102 59 1 8 108 3 104 2.07e-23 94.0
MS.gene068854.t1 MTR_4g107450 45.000 100 55 0 8 107 11 110 1.82e-22 95.1
MS.gene068854.t1 MTR_5g085390 43.519 108 60 1 5 111 7 114 7.34e-21 89.4
MS.gene068854.t1 MTR_8g017090 37.864 103 64 0 8 110 13 115 1.56e-20 89.7
MS.gene068854.t1 MTR_2g100020 33.663 101 67 0 8 108 20 120 1.54e-16 78.2
MS.gene068854.t1 MTR_4g088035 34.409 93 54 1 8 100 7 92 1.07e-13 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene068854.t1 AT5G66870 65.185 135 46 1 1 135 1 134 6.86e-55 181
MS.gene068854.t1 AT2G23660 68.224 107 34 0 4 110 2 108 4.98e-49 165
MS.gene068854.t1 AT2G23660 68.224 107 34 0 4 110 2 108 4.98e-49 165
MS.gene068854.t1 AT2G23660 68.224 107 34 0 4 110 2 108 4.98e-49 165
MS.gene068854.t1 AT5G63090 48.619 181 85 2 2 176 6 184 7.44e-48 158
MS.gene068854.t1 AT5G63090 48.619 181 85 2 2 176 6 184 7.44e-48 158
MS.gene068854.t1 AT5G63090 48.619 181 85 2 2 176 6 184 7.44e-48 158
MS.gene068854.t1 AT5G63090 48.619 181 85 2 2 176 6 184 7.44e-48 158
MS.gene068854.t1 AT3G27650 65.421 107 37 0 4 110 36 142 6.93e-46 152
MS.gene068854.t1 AT1G65620 69.725 109 33 0 2 110 4 112 4.18e-45 152
MS.gene068854.t1 AT1G65620 69.725 109 33 0 2 110 4 112 4.18e-45 152
MS.gene068854.t1 AT1G65620 69.725 109 33 0 2 110 4 112 4.18e-45 152
MS.gene068854.t1 AT1G65620 69.725 109 33 0 2 110 4 112 4.18e-45 152
MS.gene068854.t1 AT1G65620 69.725 109 33 0 2 110 4 112 4.18e-45 152
MS.gene068854.t1 AT2G30130 54.783 115 51 1 5 118 6 120 1.97e-41 142
MS.gene068854.t1 AT1G07900 44.444 162 80 2 6 163 32 187 2.53e-38 134
MS.gene068854.t1 AT1G31320 65.909 88 30 0 6 93 12 99 3.19e-38 133
MS.gene068854.t1 AT3G26660 53.465 101 47 0 8 108 6 106 2.60e-37 129
MS.gene068854.t1 AT3G26620 53.465 101 47 0 8 108 6 106 2.77e-37 129
MS.gene068854.t1 AT3G11090 55.556 108 48 0 4 111 8 115 7.33e-37 129
MS.gene068854.t1 AT2G28500 44.371 151 79 2 6 151 54 204 9.37e-37 131
MS.gene068854.t1 AT2G30340 50.000 118 59 0 6 123 52 169 1.13e-36 132
MS.gene068854.t1 AT2G30340 50.000 118 59 0 6 123 51 168 1.22e-36 132
MS.gene068854.t1 AT2G40470 57.143 105 45 0 6 110 19 123 5.13e-36 128
MS.gene068854.t1 AT2G40470 47.552 143 59 2 6 148 44 170 1.19e-35 128
MS.gene068854.t1 AT1G16530 57.282 103 43 1 6 107 13 115 4.38e-35 125
MS.gene068854.t1 AT2G42430 53.774 106 48 1 6 110 14 119 4.53e-34 124
MS.gene068854.t1 AT3G03760 55.340 103 45 1 6 107 50 152 5.27e-33 122
MS.gene068854.t1 AT3G58190 51.456 103 49 1 7 108 11 113 1.07e-31 117
MS.gene068854.t1 AT3G50510 41.176 136 75 1 1 131 6 141 7.79e-31 115
MS.gene068854.t1 AT3G50510 41.176 136 75 1 1 131 6 141 7.79e-31 115
MS.gene068854.t1 AT2G42440 49.533 107 53 1 1 106 1 107 8.00e-31 116
MS.gene068854.t1 AT2G31310 43.478 138 76 2 6 142 6 142 2.77e-30 113
MS.gene068854.t1 AT2G45420 52.885 104 48 1 10 112 40 143 3.47e-29 112
MS.gene068854.t1 AT4G00210 52.427 103 48 1 7 108 11 113 4.08e-29 111
MS.gene068854.t1 AT4G00220 51.923 104 49 1 10 112 20 123 5.79e-29 110
MS.gene068854.t1 AT5G06080 45.690 116 62 1 1 115 1 116 2.19e-27 105
MS.gene068854.t1 AT2G45410 39.037 187 76 5 10 195 19 168 4.29e-27 105
MS.gene068854.t1 AT3G13850 39.806 103 62 0 8 110 37 139 2.27e-24 99.8
MS.gene068854.t1 AT5G35900 43.137 102 58 0 8 109 6 107 3.28e-24 97.8
MS.gene068854.t1 AT3G47870 39.806 103 62 0 8 110 37 139 6.19e-23 97.1
MS.gene068854.t1 AT1G72980 37.500 104 65 0 4 107 10 113 9.66e-19 83.2
MS.gene068854.t1 AT1G06280 36.364 110 68 1 8 117 25 132 4.29e-17 78.6
MS.gene068854.t1 AT4G22700 36.538 104 64 2 8 110 6 108 2.09e-15 73.6
MS.gene068854.t1 AT2G19820 34.066 91 59 1 4 93 9 99 9.76e-13 64.3
MS.gene068854.t1 AT5G15060 42.466 73 40 1 8 78 18 90 5.04e-12 62.8

Find 73 sgRNAs with CRISPR-Local

Find 85 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAATGGAATTCGCAGTTTC+CGG 0.214379 3.2:+41475235 MS.gene068854:CDS
CCGCCGCCGCCGGCGTTGGT+GGG 0.275085 3.2:+41475534 MS.gene068854:CDS
CAGTGCTTGTTGATGAATTC+TGG 0.277883 3.2:+41475176 MS.gene068854:CDS
GCTGATGTGGCTCATCCTTT+AGG 0.321465 3.2:+41475476 MS.gene068854:CDS
GCCGCCGCCGCCGGCGTTGG+TGG 0.323443 3.2:+41475533 MS.gene068854:CDS
ATCTCTTGAGGAAAATTGTT+AGG 0.328058 3.2:-41475272 None:intergenic
CGCCGCCGCCGGCGTTGGTG+GGG 0.330008 3.2:+41475535 MS.gene068854:CDS
CCCACCAACGCCGGCGGCGG+CGG 0.335478 3.2:-41475534 None:intergenic
GCCGCCGCCGGCGTTGGTGG+GGG 0.348589 3.2:+41475536 MS.gene068854:CDS
AGTGGTGCTGCCGCCGCCGC+CGG 0.357276 3.2:+41475524 MS.gene068854:CDS
ATGGGTGCTGCTGGTGGTGG+TGG 0.365076 3.2:+41475434 MS.gene068854:CDS
CGTATAAAAGACCCTGTCTA+TGG 0.366420 3.2:+41475044 MS.gene068854:CDS
GCTGCCGCCGCCGCCGGCGT+TGG 0.372969 3.2:+41475530 MS.gene068854:CDS
CAATGGAATTCGCAGTTTCC+GGG 0.387871 3.2:+41475236 MS.gene068854:CDS
AACAAAAGCTGTGCCTCAAC+TGG 0.391954 3.2:-41475629 None:intergenic
TGAAGACGCGGTGAAATCTT+TGG 0.393603 3.2:+41475004 MS.gene068854:CDS
AGCAGCAGCCGCAGCAGCAA+TGG 0.408927 3.2:+41475219 MS.gene068854:CDS
TTGAGGATTCAAATTATAAC+CGG 0.410153 3.2:-41475147 None:intergenic
CAGATGGGTGCTGCTGGTGG+TGG 0.410616 3.2:+41475431 MS.gene068854:CDS
TCAAAATTTCCCATACCTAA+AGG 0.419636 3.2:-41475491 None:intergenic
CAAGAGATGGTTGGAGGAGG+TGG 0.424027 3.2:+41475287 MS.gene068854:CDS
GGACATCAGATGGGTGCTGC+TGG 0.424611 3.2:+41475425 MS.gene068854:CDS
GAGTTTCTCTTAACTTCTGT+TGG 0.444328 3.2:-41475091 None:intergenic
CAAGAGTATTTGCTTAGGTC+TGG 0.445183 3.2:+41475374 MS.gene068854:CDS
AAGATTTCACCGCGTCTTCA+CGG 0.446492 3.2:-41475001 None:intergenic
CTTAGGTCTGGTACTGGTGG+TGG 0.448584 3.2:+41475386 MS.gene068854:CDS
GCGAATGTTCACCGTGTCTT+CGG 0.450379 3.2:+41474933 MS.gene068854:CDS
TGCTGCGGCTGCTGCTGCTG+TGG 0.452786 3.2:-41475212 None:intergenic
AACAAGCACTGCATGGTTTG+AGG 0.465438 3.2:-41475164 None:intergenic
TGTGGCTCATCCTTTAGGTA+TGG 0.483770 3.2:+41475481 MS.gene068854:CDS
TCTCTTGAGGAAAATTGTTA+GGG 0.494095 3.2:-41475271 None:intergenic
CATCAGATGGGTGCTGCTGG+TGG 0.511905 3.2:+41475428 MS.gene068854:CDS
GGTGGATATCAGATGGGTGG+TGG 0.514995 3.2:+41475404 MS.gene068854:CDS
TACTGGTGGTGGATATCAGA+TGG 0.516614 3.2:+41475397 MS.gene068854:CDS
TATTTGCTTAGGTCTGGTAC+TGG 0.525978 3.2:+41475380 MS.gene068854:CDS
AGACCTACACATCCATAGAC+AGG 0.526929 3.2:-41475056 None:intergenic
CCTCAAGAGATGGTTGGAGG+AGG 0.527135 3.2:+41475284 MS.gene068854:CDS
CTCCACAAGAGTATTTGCTT+AGG 0.529751 3.2:+41475369 MS.gene068854:CDS
TCACCAGCTTCTTGATTCTG+TGG 0.531207 3.2:-41475656 None:intergenic
GATGGGTGGTGGACATCAGA+TGG 0.534956 3.2:+41475415 MS.gene068854:CDS
TTTCCTCAAGAGATGGTTGG+AGG 0.535089 3.2:+41475281 MS.gene068854:CDS
AATCAAGAAGCTGGTGAGGA+TGG 0.547877 3.2:+41475662 MS.gene068854:CDS
TTTGAAAGAGCTTGACGTGA+AGG 0.550279 3.2:+41474977 MS.gene068854:CDS
GTGGCTCATCCTTTAGGTAT+GGG 0.551812 3.2:+41475482 MS.gene068854:CDS
TGTTTCTGATCATGCTGATG+TGG 0.557271 3.2:+41475463 MS.gene068854:CDS
CATGACCTTCAGATGGGTGG+TGG 0.558716 3.2:+41475335 MS.gene068854:CDS
TGCGAATTCCATTGCTGCTG+CGG 0.561158 3.2:-41475227 None:intergenic
CGTTGCTTGCACCGAAGACA+CGG 0.565980 3.2:-41474944 None:intergenic
TCTCCACAGAATCAAGAAGC+TGG 0.567957 3.2:+41475653 MS.gene068854:CDS
TTGCTTAGGTCTGGTACTGG+TGG 0.569078 3.2:+41475383 MS.gene068854:CDS
CAACAACATAATTATCATGT+TGG 0.574402 3.2:+41475590 MS.gene068854:CDS
ACAAGAACATGACCTTCAGA+TGG 0.577454 3.2:+41475328 MS.gene068854:CDS
GACCTAAGCAAATACTCTTG+TGG 0.580143 3.2:-41475371 None:intergenic
ACTGGTGGTGGATATCAGAT+GGG 0.581105 3.2:+41475398 MS.gene068854:CDS
AGAAACTTGCATGCTGCACA+TGG 0.594029 3.2:-41474843 None:intergenic
GACCCTGTCTATGGATGTGT+AGG 0.599058 3.2:+41475053 MS.gene068854:CDS
ATGGGTGGTGGACATCAGAT+GGG 0.608197 3.2:+41475416 MS.gene068854:CDS
GATATCCACCACCCATCTGA+AGG 0.610464 3.2:-41475340 None:intergenic
ATTCATCAACAAGCACTGCA+TGG 0.613761 3.2:-41475171 None:intergenic
ACAGAATCAAGAAGCTGGTG+AGG 0.614291 3.2:+41475658 MS.gene068854:CDS
CAAGAACATGACCTTCAGAT+GGG 0.623978 3.2:+41475329 MS.gene068854:CDS
TATTATCATATTCAGCAGCA+AGG 0.625816 3.2:+41475560 MS.gene068854:CDS
GGTGAGGATGGTAAAAGTGT+TGG 0.628808 3.2:+41475674 MS.gene068854:CDS
GGTGAAATCTTTGGCATACG+AGG 0.628886 3.2:+41475013 MS.gene068854:CDS
TGCTCATGCTAATCCAGTTG+AGG 0.630057 3.2:+41475616 MS.gene068854:CDS
TGAACATTCGCGAATCGCTG+TGG 0.632773 3.2:-41474921 None:intergenic
GGTGGTGGATATCAGATGGG+TGG 0.634173 3.2:+41475401 MS.gene068854:CDS
CGTGAAGGACCGTGAAGACG+CGG 0.637430 3.2:+41474992 MS.gene068854:CDS
CCTCCTCCAACCATCTCTTG+AGG 0.638399 3.2:-41475284 None:intergenic
GAACATGACCTTCAGATGGG+TGG 0.648756 3.2:+41475332 MS.gene068854:CDS
GACCTACACATCCATAGACA+GGG 0.696270 3.2:-41475055 None:intergenic
TATCATATTCAGCAGCAAGG+AGG 0.711262 3.2:+41475563 MS.gene068854:CDS
AACTCAAAATGAACTCACTG+TGG 0.711640 3.2:+41475109 MS.gene068854:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! CAACAACATAATTATCATGT+TGG + chr3.2:41475590-41475609 MS.gene068854:CDS 25.0%
! TTGAGGATTCAAATTATAAC+CGG - chr3.2:41475150-41475169 None:intergenic 25.0%
ATCTCTTGAGGAAAATTGTT+AGG - chr3.2:41475275-41475294 None:intergenic 30.0%
TATTATCATATTCAGCAGCA+AGG + chr3.2:41475560-41475579 MS.gene068854:CDS 30.0%
TCAAAATTTCCCATACCTAA+AGG - chr3.2:41475494-41475513 None:intergenic 30.0%
TCTCTTGAGGAAAATTGTTA+GGG - chr3.2:41475274-41475293 None:intergenic 30.0%
TTAGGGTAATTCAAAAAACC+CGG - chr3.2:41475257-41475276 None:intergenic 30.0%
! TAACAATTTTCCTCAAGAGA+TGG + chr3.2:41475274-41475293 MS.gene068854:CDS 30.0%
AACTCAAAATGAACTCACTG+TGG + chr3.2:41475109-41475128 MS.gene068854:CDS 35.0%
GAGTTTCTCTTAACTTCTGT+TGG - chr3.2:41475094-41475113 None:intergenic 35.0%
! AATTTTCCTCAAGAGATGGT+TGG + chr3.2:41475278-41475297 MS.gene068854:CDS 35.0%
!! AATTTTGACAATGGTGCTAG+TGG + chr3.2:41475506-41475525 MS.gene068854:CDS 35.0%
!! GGTATGGGAAATTTTGACAA+TGG + chr3.2:41475497-41475516 MS.gene068854:CDS 35.0%
ACAAGAACATGACCTTCAGA+TGG + chr3.2:41475328-41475347 MS.gene068854:CDS 40.0%
CAAGAACATGACCTTCAGAT+GGG + chr3.2:41475329-41475348 MS.gene068854:CDS 40.0%
CGTATAAAAGACCCTGTCTA+TGG + chr3.2:41475044-41475063 MS.gene068854:CDS 40.0%
GACCTAAGCAAATACTCTTG+TGG - chr3.2:41475374-41475393 None:intergenic 40.0%
TATCATATTCAGCAGCAAGG+AGG + chr3.2:41475563-41475582 MS.gene068854:CDS 40.0%
TATTTGCTTAGGTCTGGTAC+TGG + chr3.2:41475380-41475399 MS.gene068854:CDS 40.0%
TTTGAAAGAGCTTGACGTGA+AGG + chr3.2:41474977-41474996 MS.gene068854:CDS 40.0%
! ATTCATCAACAAGCACTGCA+TGG - chr3.2:41475174-41475193 None:intergenic 40.0%
! CAGTGCTTGTTGATGAATTC+TGG + chr3.2:41475176-41475195 MS.gene068854:CDS 40.0%
! TGTTTCTGATCATGCTGATG+TGG + chr3.2:41475463-41475482 MS.gene068854:CDS 40.0%
!! CAAGAGTATTTGCTTAGGTC+TGG + chr3.2:41475374-41475393 MS.gene068854:CDS 40.0%
!! CTCCACAAGAGTATTTGCTT+AGG + chr3.2:41475369-41475388 MS.gene068854:CDS 40.0%
!! GGATTTTCAGGGAGAAAGTA+AGG - chr3.2:41474903-41474922 None:intergenic 40.0%
AACAAAAGCTGTGCCTCAAC+TGG - chr3.2:41475632-41475651 None:intergenic 45.0%
AAGATTTCACCGCGTCTTCA+CGG - chr3.2:41475004-41475023 None:intergenic 45.0%
AATCAAGAAGCTGGTGAGGA+TGG + chr3.2:41475662-41475681 MS.gene068854:CDS 45.0%
ACAGAATCAAGAAGCTGGTG+AGG + chr3.2:41475658-41475677 MS.gene068854:CDS 45.0%
AGAAACTTGCATGCTGCACA+TGG - chr3.2:41474846-41474865 None:intergenic 45.0%
AGACCTACACATCCATAGAC+AGG - chr3.2:41475059-41475078 None:intergenic 45.0%
CAATGGAATTCGCAGTTTCC+GGG + chr3.2:41475236-41475255 MS.gene068854:CDS 45.0%
GACCTACACATCCATAGACA+GGG - chr3.2:41475058-41475077 None:intergenic 45.0%
GCAATGGAATTCGCAGTTTC+CGG + chr3.2:41475235-41475254 MS.gene068854:CDS 45.0%
GGTGAAATCTTTGGCATACG+AGG + chr3.2:41475013-41475032 MS.gene068854:CDS 45.0%
GTGGCTCATCCTTTAGGTAT+GGG + chr3.2:41475482-41475501 MS.gene068854:CDS 45.0%
TCACCAGCTTCTTGATTCTG+TGG - chr3.2:41475659-41475678 None:intergenic 45.0%
TCTCCACAGAATCAAGAAGC+TGG + chr3.2:41475653-41475672 MS.gene068854:CDS 45.0%
TGAAGACGCGGTGAAATCTT+TGG + chr3.2:41475004-41475023 MS.gene068854:CDS 45.0%
TGCTCATGCTAATCCAGTTG+AGG + chr3.2:41475616-41475635 MS.gene068854:CDS 45.0%
TGTGGCTCATCCTTTAGGTA+TGG + chr3.2:41475481-41475500 MS.gene068854:CDS 45.0%
TTTCCTCAAGAGATGGTTGG+AGG + chr3.2:41475281-41475300 MS.gene068854:CDS 45.0%
! AACAAGCACTGCATGGTTTG+AGG - chr3.2:41475167-41475186 None:intergenic 45.0%
! CGAATCGCTGTGGATTTTCA+GGG - chr3.2:41474914-41474933 None:intergenic 45.0%
! GGTGAGGATGGTAAAAGTGT+TGG + chr3.2:41475674-41475693 MS.gene068854:CDS 45.0%
!! ACTGGTGGTGGATATCAGAT+GGG + chr3.2:41475398-41475417 MS.gene068854:CDS 45.0%
!! TACTGGTGGTGGATATCAGA+TGG + chr3.2:41475397-41475416 MS.gene068854:CDS 45.0%
ATAATAACCCCCACCAACGC+CGG - chr3.2:41475546-41475565 None:intergenic 50.0%
GAACATGACCTTCAGATGGG+TGG + chr3.2:41475332-41475351 MS.gene068854:CDS 50.0%
GACCCTGTCTATGGATGTGT+AGG + chr3.2:41475053-41475072 MS.gene068854:CDS 50.0%
GATATCCACCACCCATCTGA+AGG - chr3.2:41475343-41475362 None:intergenic 50.0%
GCGAATGTTCACCGTGTCTT+CGG + chr3.2:41474933-41474952 MS.gene068854:CDS 50.0%
GCTGATGTGGCTCATCCTTT+AGG + chr3.2:41475476-41475495 MS.gene068854:CDS 50.0%
GTGGCGAAAAAAGAACTCGC+CGG + chr3.2:41475128-41475147 MS.gene068854:CDS 50.0%
TGAACATTCGCGAATCGCTG+TGG - chr3.2:41474924-41474943 None:intergenic 50.0%
TGCGAATTCCATTGCTGCTG+CGG - chr3.2:41475230-41475249 None:intergenic 50.0%
! GCGAATCGCTGTGGATTTTC+AGG - chr3.2:41474915-41474934 None:intergenic 50.0%
! TTGCTTAGGTCTGGTACTGG+TGG + chr3.2:41475383-41475402 MS.gene068854:CDS 50.0%
!! ATGGGTGGTGGACATCAGAT+GGG + chr3.2:41475416-41475435 MS.gene068854:CDS 50.0%
CAAGAGATGGTTGGAGGAGG+TGG + chr3.2:41475287-41475306 MS.gene068854:CDS 55.0%
CATGACCTTCAGATGGGTGG+TGG + chr3.2:41475335-41475354 MS.gene068854:CDS 55.0%
CCTCAAGAGATGGTTGGAGG+AGG + chr3.2:41475284-41475303 MS.gene068854:CDS 55.0%
CCTCCTCCAACCATCTCTTG+AGG - chr3.2:41475287-41475306 None:intergenic 55.0%
CGTTGCTTGCACCGAAGACA+CGG - chr3.2:41474947-41474966 None:intergenic 55.0%
GGTGGATATCAGATGGGTGG+TGG + chr3.2:41475404-41475423 MS.gene068854:CDS 55.0%
!! CTTAGGTCTGGTACTGGTGG+TGG + chr3.2:41475386-41475405 MS.gene068854:CDS 55.0%
!! GATGGGTGGTGGACATCAGA+TGG + chr3.2:41475415-41475434 MS.gene068854:CDS 55.0%
!! GGTGGTGGATATCAGATGGG+TGG + chr3.2:41475401-41475420 MS.gene068854:CDS 55.0%
CGTGAAGGACCGTGAAGACG+CGG + chr3.2:41474992-41475011 MS.gene068854:CDS 60.0%
! GGACATCAGATGGGTGCTGC+TGG + chr3.2:41475425-41475444 MS.gene068854:CDS 60.0%
!! CATCAGATGGGTGCTGCTGG+TGG + chr3.2:41475428-41475447 MS.gene068854:CDS 60.0%
AGCAGCAGCCGCAGCAGCAA+TGG + chr3.2:41475219-41475238 MS.gene068854:CDS 65.0%
ATAACCCCCACCAACGCCGG+CGG - chr3.2:41475543-41475562 None:intergenic 65.0%
!! ATGGGTGCTGCTGGTGGTGG+TGG + chr3.2:41475434-41475453 MS.gene068854:CDS 65.0%
!! CAGATGGGTGCTGCTGGTGG+TGG + chr3.2:41475431-41475450 MS.gene068854:CDS 65.0%
TGCTGCGGCTGCTGCTGCTG+TGG - chr3.2:41475215-41475234 None:intergenic 70.0%
! ACCCCCACCAACGCCGGCGG+CGG - chr3.2:41475540-41475559 None:intergenic 80.0%
!!! AGTGGTGCTGCCGCCGCCGC+CGG + chr3.2:41475524-41475543 MS.gene068854:CDS 80.0%
! CCCACCAACGCCGGCGGCGG+CGG - chr3.2:41475537-41475556 None:intergenic 85.0%
!!! CCGCCGCCGCCGGCGTTGGT+GGG + chr3.2:41475534-41475553 MS.gene068854:CDS 85.0%
!!! CGCCGCCGCCGGCGTTGGTG+GGG + chr3.2:41475535-41475554 MS.gene068854:CDS 85.0%
!!! GCCGCCGCCGGCGTTGGTGG+GGG + chr3.2:41475536-41475555 MS.gene068854:CDS 85.0%
! GCTGCCGCCGCCGCCGGCGT+TGG + chr3.2:41475530-41475549 MS.gene068854:CDS 90.0%
!! GCCGCCGCCGCCGGCGTTGG+TGG + chr3.2:41475533-41475552 MS.gene068854:CDS 90.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 41474825 41475718 41474825 ID=MS.gene068854
chr3.2 mRNA 41474825 41475718 41474825 ID=MS.gene068854.t1;Parent=MS.gene068854
chr3.2 exon 41474825 41475718 41474825 ID=MS.gene068854.t1.exon1;Parent=MS.gene068854.t1
chr3.2 CDS 41474825 41475718 41474825 ID=cds.MS.gene068854.t1;Parent=MS.gene068854.t1
Gene Sequence

>MS.gene068854

ATGTCTTCATCAAATTCACCATGTGCAGCATGCAAGTTTCTCAGACGAAAGTGCACTCAAGAATGTGATTTTGCACCTTACTTTCTCCCTGAAAATCCACAGCGATTCGCGAATGTTCACCGTGTCTTCGGTGCAAGCAACGTTGCTAAGCTTTTGAAAGAGCTTGACGTGAAGGACCGTGAAGACGCGGTGAAATCTTTGGCATACGAGGCAGAGTCTCGTATAAAAGACCCTGTCTATGGATGTGTAGGTCTCATCTCATTTCTCCAACAGAAGTTAAGAGAAACTCAAAATGAACTCACTGTGGCGAAAAAAGAACTCGCCGGTTATAATTTGAATCCTCAAACCATGCAGTGCTTGTTGATGAATTCTGGAACAGTTTTAATGCCACAGCAGCAGCAGCCGCAGCAGCAATGGAATTCGCAGTTTCCGGGTTTTTTGAATTACCCTAACAATTTTCCTCAAGAGATGGTTGGAGGAGGTGGACTAGTTATGCAGCAGCAACAAGAACATGACCTTCAGATGGGTGGTGGATATCAACTTACTCCACAAGAGTATTTGCTTAGGTCTGGTACTGGTGGTGGATATCAGATGGGTGGTGGACATCAGATGGGTGCTGCTGGTGGTGGTGGTGTTGCTGTTTCTGATCATGCTGATGTGGCTCATCCTTTAGGTATGGGAAATTTTGACAATGGTGCTAGTGGTGCTGCCGCCGCCGCCGGCGTTGGTGGGGGTTATTATCATATTCAGCAGCAAGGAGGAGAGCAACAACATAATTATCATGTTGGTGTTGCTCATGCTAATCCAGTTGAGGCACAGCTTTTGTTATCTCCACAGAATCAAGAAGCTGGTGAGGATGGTAAAAGTGTTGGTAGTGCTCATCGTTCAAGTTGA
Protein sequence

>MS.gene068854.t1

MSSSNSPCAACKFLRRKCTQECDFAPYFLPENPQRFANVHRVFGASNVAKLLKELDVKDREDAVKSLAYEAESRIKDPVYGCVGLISFLQQKLRETQNELTVAKKELAGYNLNPQTMQCLLMNSGTVLMPQQQQPQQQWNSQFPGFLNYPNNFPQEMVGGGGLVMQQQQEHDLQMGGGYQLTPQEYLLRSGTGGGYQMGGGHQMGAAGGGGVAVSDHADVAHPLGMGNFDNGASGAAAAAGVGGGYYHIQQQGGEQQHNYHVGVAHANPVEAQLLLSPQNQEAGEDGKSVGSAHRSS