Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068933.t1 | XP_024632767.1 | 81.5 | 271 | 30 | 4 | 1 | 255 | 1 | 267 | 1.50E-105 | 392.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068933.t1 | P23922 | 42.5 | 73 | 42 | 0 | 170 | 242 | 252 | 324 | 4.7e-07 | 56.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068933.t1 | G7ISU2 | 80.0 | 275 | 31 | 4 | 1 | 255 | 1 | 271 | 2.6e-104 | 387.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene068933.t1 | TF | bZIP |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068933.t1 | MTR_2g045700 | 80.000 | 275 | 31 | 4 | 1 | 255 | 1 | 271 | 2.89e-150 | 420 |
MS.gene068933.t1 | MTR_2g045670 | 70.566 | 265 | 65 | 4 | 1 | 255 | 20 | 281 | 1.48e-122 | 350 |
MS.gene068933.t1 | MTR_2g045630 | 72.917 | 240 | 47 | 3 | 29 | 254 | 42 | 277 | 9.07e-114 | 328 |
MS.gene068933.t1 | MTR_1g034500 | 61.165 | 309 | 64 | 8 | 1 | 255 | 1 | 307 | 9.33e-112 | 324 |
MS.gene068933.t1 | MTR_8g077950 | 45.000 | 80 | 44 | 0 | 170 | 249 | 258 | 337 | 1.90e-15 | 75.1 |
MS.gene068933.t1 | MTR_8g077950 | 45.000 | 80 | 44 | 0 | 170 | 249 | 260 | 339 | 1.93e-15 | 75.1 |
MS.gene068933.t1 | MTR_8g077950 | 45.000 | 80 | 44 | 0 | 170 | 249 | 200 | 279 | 2.26e-15 | 74.3 |
MS.gene068933.t1 | MTR_5g028850 | 38.542 | 96 | 57 | 2 | 148 | 242 | 286 | 380 | 3.81e-13 | 68.9 |
MS.gene068933.t1 | MTR_5g028850 | 38.542 | 96 | 57 | 2 | 148 | 242 | 284 | 378 | 3.94e-13 | 68.6 |
MS.gene068933.t1 | MTR_8g070820 | 34.783 | 92 | 60 | 0 | 146 | 237 | 257 | 348 | 4.30e-11 | 62.8 |
MS.gene068933.t1 | MTR_8g070820 | 37.363 | 91 | 55 | 2 | 148 | 237 | 285 | 374 | 4.92e-11 | 62.4 |
MS.gene068933.t1 | MTR_8g028150 | 44.118 | 68 | 38 | 0 | 170 | 237 | 280 | 347 | 7.20e-11 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068933.t1 | AT4G36730 | 45.000 | 80 | 44 | 0 | 170 | 249 | 222 | 301 | 2.49e-15 | 74.7 |
MS.gene068933.t1 | AT4G36730 | 45.000 | 80 | 44 | 0 | 170 | 249 | 220 | 299 | 2.97e-15 | 74.3 |
MS.gene068933.t1 | AT2G35530 | 40.260 | 77 | 45 | 1 | 162 | 237 | 296 | 372 | 2.00e-11 | 63.9 |
MS.gene068933.t1 | AT1G32150 | 35.577 | 104 | 66 | 1 | 131 | 233 | 255 | 358 | 3.42e-11 | 63.2 |
Find 49 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCTGGGCTGGGTCAGAATT+TGG | 0.147766 | 2.1:-45539281 | MS.gene068933:CDS |
GCAAATAATTTGTTGAAATC+TGG | 0.194573 | 2.1:+45540071 | None:intergenic |
TCTGGGCTGGGTCAGAATTT+GGG | 0.213477 | 2.1:-45539280 | MS.gene068933:CDS |
CATTGAAGTAGTGCAATATT+TGG | 0.230581 | 2.1:+45540441 | None:intergenic |
AAACGCTCGCTGAGCTTTCT+AGG | 0.255804 | 2.1:-45538543 | MS.gene068933:CDS |
CAGAGATCTAACATGATTAT+TGG | 0.278706 | 2.1:-45539419 | MS.gene068933:CDS |
GCTCAGCGAGCGTTTGTGTT+AGG | 0.282879 | 2.1:+45538551 | None:intergenic |
CTCTGCTACATGAGGATTAT+AGG | 0.311040 | 2.1:+45540389 | None:intergenic |
AAATAAGAAAAGAAAGAAAA+AGG | 0.331181 | 2.1:-45538766 | MS.gene068933:CDS |
TTCTTTGTAGAAAATCCATC+TGG | 0.342852 | 2.1:-45539298 | MS.gene068933:intron |
AATAGATCTGCAACCGATTC+TGG | 0.354294 | 2.1:+45538187 | None:intergenic |
CTTCTGCATCAAAACATGAT+AGG | 0.360568 | 2.1:-45539986 | MS.gene068933:CDS |
CAAATAATTTGTTGAAATCT+GGG | 0.364865 | 2.1:+45540072 | None:intergenic |
GAAGAGCTAGTTAAAGAGTA+TGG | 0.380462 | 2.1:-45538211 | MS.gene068933:CDS |
TCTTGATGCTCAACTAAAAC+TGG | 0.396539 | 2.1:-45539224 | MS.gene068933:intron |
GATCTCTGCTTCATACTTGA+AGG | 0.401624 | 2.1:+45539434 | None:intergenic |
GAATTTGGGGACAGTTGTTA+AGG | 0.407905 | 2.1:-45539266 | MS.gene068933:CDS |
TGGCAGACCTTACAATTTCT+CGG | 0.413188 | 2.1:-45540581 | MS.gene068933:CDS |
AAGAAAGAATCCATTCCATT+TGG | 0.414690 | 2.1:-45540601 | MS.gene068933:CDS |
GTTTATCTGCGCAGGGCGGC+TGG | 0.415010 | 2.1:-45539880 | MS.gene068933:intron |
CCAGTAATTAAACTTAAAAC+AGG | 0.417895 | 2.1:+45540035 | None:intergenic |
AAGATCAAAGATAAGGAAAC+AGG | 0.427615 | 2.1:-45538720 | MS.gene068933:intron |
TCTGCGTACCATTTCTGAAA+AGG | 0.446864 | 2.1:+45540100 | None:intergenic |
TGTAGAAAATCCATCTGGGC+TGG | 0.452613 | 2.1:-45539293 | MS.gene068933:intron |
CTGGGCTGGGTCAGAATTTG+GGG | 0.465599 | 2.1:-45539279 | MS.gene068933:CDS |
CAGCTAAAAGATCAAAGATA+AGG | 0.486050 | 2.1:-45538727 | MS.gene068933:CDS |
TAAAGAGTATGGACCAGAAT+CGG | 0.507916 | 2.1:-45538200 | MS.gene068933:CDS |
TTCTGCATCAAAACATGATA+GGG | 0.510843 | 2.1:-45539985 | MS.gene068933:CDS |
GTAGAAAATCCATCTGGGCT+GGG | 0.520703 | 2.1:-45539292 | MS.gene068933:intron |
TGAGCTTTCTAGGAAATCTC+TGG | 0.524391 | 2.1:-45538533 | MS.gene068933:CDS |
AAATTGTAAGGTCTGCCAAA+TGG | 0.525325 | 2.1:+45540586 | None:intergenic |
AAATTCTGACCCAGCCCAGA+TGG | 0.526322 | 2.1:+45539283 | None:intergenic |
TATCTGCGCAGGGCGGCTGG+TGG | 0.532947 | 2.1:-45539877 | MS.gene068933:intron |
AGGATTATAGGAGTGCTCCA+TGG | 0.533304 | 2.1:+45540401 | None:intergenic |
AGCGGCGCCGAGAAATTGTA+AGG | 0.545305 | 2.1:+45540574 | None:intergenic |
GTAAGGTCTGCCAAATGGAA+TGG | 0.548289 | 2.1:+45540591 | None:intergenic |
GGATTATAGGAGTGCTCCAT+GGG | 0.557237 | 2.1:+45540402 | None:intergenic |
CAATGAAAACAATTCTATTG+TGG | 0.567676 | 2.1:-45538503 | MS.gene068933:intron |
TCTAACATGATTATTGGTGA+TGG | 0.571130 | 2.1:-45539413 | MS.gene068933:intron |
TCTTTGTAGAAAATCCATCT+GGG | 0.584157 | 2.1:-45539297 | MS.gene068933:intron |
GCATCAAAACATGATAGGGA+TGG | 0.584620 | 2.1:-45539981 | MS.gene068933:CDS |
AGCGAGCGTTTGTGTTAGGA+CGG | 0.595395 | 2.1:+45538555 | None:intergenic |
CTATAATCCTCATGTAGCAG+AGG | 0.614984 | 2.1:-45540388 | MS.gene068933:intron |
CGACCCACCTCTGCTACATG+AGG | 0.618025 | 2.1:+45540381 | None:intergenic |
TGATGCTCTACATGATCCCA+TGG | 0.619943 | 2.1:-45540418 | MS.gene068933:CDS |
GAACAAACTGTACCTCATTG+AGG | 0.623003 | 2.1:+45539956 | None:intergenic |
GGAAGTAAGAGATCAACAGA+TGG | 0.635178 | 2.1:-45539856 | MS.gene068933:CDS |
CATGATTTACTGACATCTAG+CGG | 0.690857 | 2.1:+45540556 | None:intergenic |
ATAGGGATGGAACCTCAATG+AGG | 0.730132 | 2.1:-45539968 | MS.gene068933:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATAAGAAAAGAAAGAAAA+AGG | - | chr2.1:45540009-45540028 | MS.gene068933:CDS | 15.0% |
!! | TATAGTTAGTATATATTTAG+TGG | - | chr2.1:45538485-45538504 | MS.gene068933:intron | 15.0% |
!! | TTTCACTATTAATTAAGAAA+AGG | - | chr2.1:45540385-45540404 | MS.gene068933:intron | 15.0% |
!!! | ATAAAAATGTTTATGCATTT+TGG | - | chr2.1:45538635-45538654 | MS.gene068933:intron | 15.0% |
!!! | TGGATTTTCATATTTTTTTA+GGG | - | chr2.1:45538505-45538524 | MS.gene068933:CDS | 15.0% |
!!! | TTAAAATTTTTCTTTAGTAC+AGG | - | chr2.1:45539275-45539294 | MS.gene068933:CDS | 15.0% |
!! | AAATTAACGTAATAAAAGAC+TGG | + | chr2.1:45539659-45539678 | None:intergenic | 20.0% |
!! | AATTATATTCTACTACGATA+TGG | + | chr2.1:45539799-45539818 | None:intergenic | 20.0% |
!! | ATAAATACTATAAACGAAGA+TGG | + | chr2.1:45540411-45540430 | None:intergenic | 20.0% |
!! | ATAATTGAACAAAGAAGAAA+GGG | + | chr2.1:45540313-45540332 | None:intergenic | 20.0% |
!! | TATAATTGAACAAAGAAGAA+AGG | + | chr2.1:45540314-45540333 | None:intergenic | 20.0% |
!!! | CAAATAATTTGTTGAAATCT+GGG | + | chr2.1:45538706-45538725 | None:intergenic | 20.0% |
!!! | GGATTTTCATATTTTTTTAG+GGG | - | chr2.1:45538506-45538525 | MS.gene068933:CDS | 20.0% |
!!! | GTGGATTTTCATATTTTTTT+AGG | - | chr2.1:45538504-45538523 | MS.gene068933:CDS | 20.0% |
! | CAAAAGAAATGCAACTAAAT+AGG | + | chr2.1:45539975-45539994 | None:intergenic | 25.0% |
! | CAATGAAAACAATTCTATTG+TGG | - | chr2.1:45540272-45540291 | MS.gene068933:intron | 25.0% |
! | CAATGAATATATCTACTGAA+AGG | + | chr2.1:45538423-45538442 | None:intergenic | 25.0% |
! | CCAGTAATTAAACTTAAAAC+AGG | + | chr2.1:45538743-45538762 | None:intergenic | 25.0% |
! | TAAAGAAAACTAGTTAAGAC+AGG | + | chr2.1:45538250-45538269 | None:intergenic | 25.0% |
!!! | CCTGTTTTAAGTTTAATTAC+TGG | - | chr2.1:45538740-45538759 | MS.gene068933:CDS | 25.0% |
!!! | GCAAATAATTTGTTGAAATC+TGG | + | chr2.1:45538707-45538726 | None:intergenic | 25.0% |
!!! | TTTCATATTTTTTTAGGGGT+GGG | - | chr2.1:45538510-45538529 | MS.gene068933:CDS | 25.0% |
!!! | TTTTCATATTTTTTTAGGGG+TGG | - | chr2.1:45538509-45538528 | MS.gene068933:CDS | 25.0% |
AAGAAAGAATCCATTCCATT+TGG | - | chr2.1:45538174-45538193 | MS.gene068933:CDS | 30.0% | |
AAGATCAAAGATAAGGAAAC+AGG | - | chr2.1:45540055-45540074 | MS.gene068933:CDS | 30.0% | |
AAGCTTAGCAACATTAAGAA+GGG | + | chr2.1:45539921-45539940 | None:intergenic | 30.0% | |
AGTTTAGCTAATTCACAGAA+AGG | + | chr2.1:45539626-45539645 | None:intergenic | 30.0% | |
ATCTAACAAAGAGAGATCAA+AGG | + | chr2.1:45540469-45540488 | None:intergenic | 30.0% | |
CAGAGATCTAACATGATTAT+TGG | - | chr2.1:45539356-45539375 | MS.gene068933:intron | 30.0% | |
CAGCTAAAAGATCAAAGATA+AGG | - | chr2.1:45540048-45540067 | MS.gene068933:CDS | 30.0% | |
CATTGAAGTAGTGCAATATT+TGG | + | chr2.1:45538337-45538356 | None:intergenic | 30.0% | |
CTCTCATACAAACATGTTAT+AGG | - | chr2.1:45539744-45539763 | MS.gene068933:intron | 30.0% | |
GTATTGAGATGTCTATGAAT+TGG | - | chr2.1:45540111-45540130 | MS.gene068933:CDS | 30.0% | |
TAAGCTTAGCAACATTAAGA+AGG | + | chr2.1:45539922-45539941 | None:intergenic | 30.0% | |
TCTAACATGATTATTGGTGA+TGG | - | chr2.1:45539362-45539381 | MS.gene068933:intron | 30.0% | |
TCTTTGTAGAAAATCCATCT+GGG | - | chr2.1:45539478-45539497 | MS.gene068933:intron | 30.0% | |
TTCTGCATCAAAACATGATA+GGG | - | chr2.1:45538790-45538809 | MS.gene068933:intron | 30.0% | |
TTCTTTGTAGAAAATCCATC+TGG | - | chr2.1:45539477-45539496 | MS.gene068933:intron | 30.0% | |
! | ACACATTCAATTAGAAGTGT+CGG | - | chr2.1:45539169-45539188 | MS.gene068933:intron | 30.0% |
! | GGATTTTCTACAAAGAAACA+AGG | + | chr2.1:45539474-45539493 | None:intergenic | 30.0% |
! | TTAGTTGCATTTCTTTTGAC+AGG | - | chr2.1:45539977-45539996 | MS.gene068933:CDS | 30.0% |
!! | AATGTTTATGCATTTTGGTC+AGG | - | chr2.1:45538640-45538659 | MS.gene068933:intron | 30.0% |
!! | TATTGGTGATGGTAAGATTA+TGG | - | chr2.1:45539373-45539392 | MS.gene068933:intron | 30.0% |
!!! | TAGGAAGTGTTTTTAAGTAG+TGG | - | chr2.1:45539763-45539782 | MS.gene068933:intron | 30.0% |
!!! | TTCATATTTTTTTAGGGGTG+GGG | - | chr2.1:45538511-45538530 | MS.gene068933:CDS | 30.0% |
AAAGAAAAAGGCTGTCAAAC+AGG | - | chr2.1:45540021-45540040 | MS.gene068933:CDS | 35.0% | |
AAATTGTAAGGTCTGCCAAA+TGG | + | chr2.1:45538192-45538211 | None:intergenic | 35.0% | |
ACACAAATTAGGAGCAATCT+TGG | + | chr2.1:45540524-45540543 | None:intergenic | 35.0% | |
AGCTTAGCAACATTAAGAAG+GGG | + | chr2.1:45539920-45539939 | None:intergenic | 35.0% | |
CACCAAATCACACACAAATT+AGG | + | chr2.1:45540535-45540554 | None:intergenic | 35.0% | |
CATGATTTACTGACATCTAG+CGG | + | chr2.1:45538222-45538241 | None:intergenic | 35.0% | |
CTTCTGCATCAAAACATGAT+AGG | - | chr2.1:45538789-45538808 | MS.gene068933:intron | 35.0% | |
GAAGAGCTAGTTAAAGAGTA+TGG | - | chr2.1:45540564-45540583 | MS.gene068933:intron | 35.0% | |
TCTTCACATTCTTTCTGACA+AGG | + | chr2.1:45540162-45540181 | None:intergenic | 35.0% | |
TCTTGATGCTCAACTAAAAC+TGG | - | chr2.1:45539551-45539570 | MS.gene068933:intron | 35.0% | |
! | AAACGATTTTGTTCACGCTT+TGG | + | chr2.1:45538879-45538898 | None:intergenic | 35.0% |
! | ACAGTTTGTTCTTGTTCTTC+TGG | - | chr2.1:45538831-45538850 | MS.gene068933:intron | 35.0% |
! | CTAATTTGTGTGTGATTTGG+TGG | - | chr2.1:45540533-45540552 | MS.gene068933:intron | 35.0% |
! | CTCCTAATTTGTGTGTGATT+TGG | - | chr2.1:45540530-45540549 | MS.gene068933:intron | 35.0% |
! | TAAAGAGTATGGACCAGAAT+CGG | - | chr2.1:45540575-45540594 | MS.gene068933:CDS | 35.0% |
!! | TCAATTAGAAGTGTCGGTAT+CGG | - | chr2.1:45539175-45539194 | MS.gene068933:intron | 35.0% |
!!! | TATTGTTTTTGACACGCTAG+CGG | - | chr2.1:45539833-45539852 | MS.gene068933:intron | 35.0% |
ACAAAATCGTTTATCTGCGC+AGG | - | chr2.1:45538887-45538906 | MS.gene068933:intron | 40.0% | |
CAAAATCGTTTATCTGCGCA+GGG | - | chr2.1:45538888-45538907 | MS.gene068933:intron | 40.0% | |
CTACAGAGGTTAGAACACTT+AGG | - | chr2.1:45539231-45539250 | MS.gene068933:CDS | 40.0% | |
CTATAATCCTCATGTAGCAG+AGG | - | chr2.1:45538387-45538406 | MS.gene068933:intron | 40.0% | |
CTCTGCTACATGAGGATTAT+AGG | + | chr2.1:45538389-45538408 | None:intergenic | 40.0% | |
CTGTTGAATTGCACCAATCA+TGG | + | chr2.1:45540092-45540111 | None:intergenic | 40.0% | |
GAAAATCTGCTCACAACAAC+AGG | - | chr2.1:45539719-45539738 | MS.gene068933:intron | 40.0% | |
GAACAAACTGTACCTCATTG+AGG | + | chr2.1:45538822-45538841 | None:intergenic | 40.0% | |
GAATTTGGGGACAGTTGTTA+AGG | - | chr2.1:45539509-45539528 | MS.gene068933:intron | 40.0% | |
GATCTCTGCTTCATACTTGA+AGG | + | chr2.1:45539344-45539363 | None:intergenic | 40.0% | |
GCATCAAAACATGATAGGGA+TGG | - | chr2.1:45538794-45538813 | MS.gene068933:intron | 40.0% | |
GGAAGTAAGAGATCAACAGA+TGG | - | chr2.1:45538919-45538938 | MS.gene068933:intron | 40.0% | |
GTCTAATCACATCCTTTCCT+TGG | - | chr2.1:45539309-45539328 | MS.gene068933:intron | 40.0% | |
TACAGTAGCAATGATGCCTA+CGG | - | chr2.1:45539865-45539884 | MS.gene068933:CDS | 40.0% | |
TACTACAGATGTTGACGTGT+CGG | + | chr2.1:45539070-45539089 | None:intergenic | 40.0% | |
TGGCAGACCTTACAATTTCT+CGG | - | chr2.1:45538194-45538213 | MS.gene068933:CDS | 40.0% | |
! | AATAGATCTGCAACCGATTC+TGG | + | chr2.1:45540591-45540610 | None:intergenic | 40.0% |
! | ACACCTTCGTTTAGAAGTGT+CGG | - | chr2.1:45539206-45539225 | MS.gene068933:intron | 40.0% |
! | TCTGCGTACCATTTCTGAAA+AGG | + | chr2.1:45538678-45538697 | None:intergenic | 40.0% |
! | TGAGCTTTCTAGGAAATCTC+TGG | - | chr2.1:45540242-45540261 | MS.gene068933:intron | 40.0% |
! | TTTTGATGCAGAAGACTGGT+TGG | + | chr2.1:45538783-45538802 | None:intergenic | 40.0% |
!! | ATTTGTGTGTGATTTGGTGG+TGG | - | chr2.1:45540536-45540555 | MS.gene068933:intron | 40.0% |
!!! | ATTTTTTTAGGGGTGGGGTT+GGG | - | chr2.1:45538516-45538535 | MS.gene068933:CDS | 40.0% |
!!! | CATGTTTTGATGCAGAAGAC+TGG | + | chr2.1:45538787-45538806 | None:intergenic | 40.0% |
!!! | TATTTTTTTAGGGGTGGGGT+TGG | - | chr2.1:45538515-45538534 | MS.gene068933:CDS | 40.0% |
AATCACATCCTTTCCTTGGC+AGG | - | chr2.1:45539313-45539332 | MS.gene068933:intron | 45.0% | |
AATCCTCATGTAGCAGAGGT+GGG | - | chr2.1:45538391-45538410 | MS.gene068933:intron | 45.0% | |
AATGATGCCTACGGGAAGAT+TGG | - | chr2.1:45539874-45539893 | MS.gene068933:intron | 45.0% | |
ACAGTAGCAATGATGCCTAC+GGG | - | chr2.1:45539866-45539885 | MS.gene068933:CDS | 45.0% | |
ATAGGGATGGAACCTCAATG+AGG | - | chr2.1:45538807-45538826 | MS.gene068933:intron | 45.0% | |
CACAAGAACTGCAGTTCATG+TGG | - | chr2.1:45539434-45539453 | MS.gene068933:CDS | 45.0% | |
GGTACGTACTAGACCATGAT+TGG | - | chr2.1:45540076-45540095 | MS.gene068933:CDS | 45.0% | |
GTAAGGTCTGCCAAATGGAA+TGG | + | chr2.1:45538187-45538206 | None:intergenic | 45.0% | |
GTAGAAAATCCATCTGGGCT+GGG | - | chr2.1:45539483-45539502 | MS.gene068933:intron | 45.0% | |
TAATCCTCATGTAGCAGAGG+TGG | - | chr2.1:45538390-45538409 | MS.gene068933:intron | 45.0% | |
TCATGTGTTGCGTCAGTATC+AGG | - | chr2.1:45539113-45539132 | MS.gene068933:intron | 45.0% | |
TGATGCTCTACATGATCCCA+TGG | - | chr2.1:45538357-45538376 | MS.gene068933:intron | 45.0% | |
TGTAGAAAATCCATCTGGGC+TGG | - | chr2.1:45539482-45539501 | MS.gene068933:intron | 45.0% | |
!! | AACCTATGAAGCATCGACAC+TGG | - | chr2.1:45539030-45539049 | MS.gene068933:intron | 45.0% |
!! | AGGATTATAGGAGTGCTCCA+TGG | + | chr2.1:45538377-45538396 | None:intergenic | 45.0% |
!! | GGATTATAGGAGTGCTCCAT+GGG | + | chr2.1:45538376-45538395 | None:intergenic | 45.0% |
!!! | TGCACTGGCCTTTTCAGAAA+TGG | - | chr2.1:45538667-45538686 | MS.gene068933:intron | 45.0% |
!!! | TTTTTTTAGGGGTGGGGTTG+GGG | - | chr2.1:45538517-45538536 | MS.gene068933:CDS | 45.0% |
AAACGCTCGCTGAGCTTTCT+AGG | - | chr2.1:45540232-45540251 | MS.gene068933:intron | 50.0% | |
AAATTCTGACCCAGCCCAGA+TGG | + | chr2.1:45539495-45539514 | None:intergenic | 50.0% | |
AATCGTTTATCTGCGCAGGG+CGG | - | chr2.1:45538891-45538910 | MS.gene068933:intron | 50.0% | |
AGCGAGCGTTTGTGTTAGGA+CGG | + | chr2.1:45540223-45540242 | None:intergenic | 50.0% | |
AGGATAGTCCTGCCAAGGAA+AGG | + | chr2.1:45539324-45539343 | None:intergenic | 50.0% | |
CTTGAAGGATAGTCCTGCCA+AGG | + | chr2.1:45539329-45539348 | None:intergenic | 50.0% | |
TCCATCTCCAATCTTCCCGT+AGG | + | chr2.1:45539884-45539903 | None:intergenic | 50.0% | |
TGACACGCTAGCGGTTATAG+CGG | - | chr2.1:45539842-45539861 | MS.gene068933:CDS | 50.0% | |
! | AGATGTTGACGTGTCGGTGT+CGG | + | chr2.1:45539064-45539083 | None:intergenic | 50.0% |
! | AGTGACACACGTGTTGGTGT+TGG | - | chr2.1:45539137-45539156 | MS.gene068933:intron | 50.0% |
! | ATCTGGGCTGGGTCAGAATT+TGG | - | chr2.1:45539494-45539513 | MS.gene068933:intron | 50.0% |
! | GCACCGACACTTCTAAACGA+AGG | + | chr2.1:45539212-45539231 | None:intergenic | 50.0% |
! | TCTGGGCTGGGTCAGAATTT+GGG | - | chr2.1:45539495-45539514 | MS.gene068933:intron | 50.0% |
! | TTTTGGTCAGGATGCTGCAC+TGG | - | chr2.1:45538652-45538671 | MS.gene068933:intron | 50.0% |
!! | GTCCAGTGTCGATGCTTCAT+AGG | + | chr2.1:45539035-45539054 | None:intergenic | 50.0% |
!! | GTGTGATTTGGTGGTGGAAC+AGG | - | chr2.1:45540542-45540561 | MS.gene068933:intron | 50.0% |
!! | TAGAAGTGTCGGTGCTACAG+AGG | - | chr2.1:45539217-45539236 | MS.gene068933:intron | 50.0% |
!!! | TTTTTTAGGGGTGGGGTTGG+GGG | - | chr2.1:45538518-45538537 | MS.gene068933:CDS | 50.0% |
GCCTACGGGAAGATTGGAGA+TGG | - | chr2.1:45539880-45539899 | MS.gene068933:intron | 55.0% | |
GCTCAGCGAGCGTTTGTGTT+AGG | + | chr2.1:45540227-45540246 | None:intergenic | 55.0% | |
TCAGGCAGTGACACACGTGT+TGG | - | chr2.1:45539131-45539150 | MS.gene068933:intron | 55.0% | |
! | AGCGGCGCCGAGAAATTGTA+AGG | + | chr2.1:45538204-45538223 | None:intergenic | 55.0% |
! | CTGGGCTGGGTCAGAATTTG+GGG | - | chr2.1:45539496-45539515 | MS.gene068933:intron | 55.0% |
CGACCCACCTCTGCTACATG+AGG | + | chr2.1:45538397-45538416 | None:intergenic | 60.0% | |
GTTTATCTGCGCAGGGCGGC+TGG | - | chr2.1:45538895-45538914 | MS.gene068933:intron | 65.0% | |
TATCTGCGCAGGGCGGCTGG+TGG | - | chr2.1:45538898-45538917 | MS.gene068933:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 45538168 | 45540629 | 45538168 | ID=MS.gene068933 |
chr2.1 | mRNA | 45538168 | 45540629 | 45538168 | ID=MS.gene068933.t1;Parent=MS.gene068933 |
chr2.1 | exon | 45540570 | 45540629 | 45540570 | ID=MS.gene068933.t1.exon1;Parent=MS.gene068933.t1 |
chr2.1 | CDS | 45540570 | 45540629 | 45540570 | ID=cds.MS.gene068933.t1;Parent=MS.gene068933.t1 |
chr2.1 | exon | 45540389 | 45540469 | 45540389 | ID=MS.gene068933.t1.exon2;Parent=MS.gene068933.t1 |
chr2.1 | CDS | 45540389 | 45540469 | 45540389 | ID=cds.MS.gene068933.t1;Parent=MS.gene068933.t1 |
chr2.1 | exon | 45539969 | 45540135 | 45539969 | ID=MS.gene068933.t1.exon3;Parent=MS.gene068933.t1 |
chr2.1 | CDS | 45539969 | 45540135 | 45539969 | ID=cds.MS.gene068933.t1;Parent=MS.gene068933.t1 |
chr2.1 | exon | 45539834 | 45539888 | 45539834 | ID=MS.gene068933.t1.exon4;Parent=MS.gene068933.t1 |
chr2.1 | CDS | 45539834 | 45539888 | 45539834 | ID=cds.MS.gene068933.t1;Parent=MS.gene068933.t1 |
chr2.1 | exon | 45539414 | 45539462 | 45539414 | ID=MS.gene068933.t1.exon5;Parent=MS.gene068933.t1 |
chr2.1 | CDS | 45539414 | 45539462 | 45539414 | ID=cds.MS.gene068933.t1;Parent=MS.gene068933.t1 |
chr2.1 | exon | 45539225 | 45539310 | 45539225 | ID=MS.gene068933.t1.exon6;Parent=MS.gene068933.t1 |
chr2.1 | CDS | 45539225 | 45539310 | 45539225 | ID=cds.MS.gene068933.t1;Parent=MS.gene068933.t1 |
chr2.1 | exon | 45538721 | 45538798 | 45538721 | ID=MS.gene068933.t1.exon7;Parent=MS.gene068933.t1 |
chr2.1 | CDS | 45538721 | 45538798 | 45538721 | ID=cds.MS.gene068933.t1;Parent=MS.gene068933.t1 |
chr2.1 | exon | 45538504 | 45538629 | 45538504 | ID=MS.gene068933.t1.exon8;Parent=MS.gene068933.t1 |
chr2.1 | CDS | 45538504 | 45538629 | 45538504 | ID=cds.MS.gene068933.t1;Parent=MS.gene068933.t1 |
chr2.1 | exon | 45538168 | 45538233 | 45538168 | ID=MS.gene068933.t1.exon9;Parent=MS.gene068933.t1 |
chr2.1 | CDS | 45538168 | 45538233 | 45538168 | ID=cds.MS.gene068933.t1;Parent=MS.gene068933.t1 |
Gene Sequence |
Protein sequence |